AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0548720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548720 MtrunA17_Chr4g0032441 97.551 490 12 0 1 490 1 490 0.0 986
Msa0548720 MtrunA17_Chr2g0328781 71.694 484 135 2 4 487 20 501 0.0 732
Msa0548720 MtrunA17_Chr8g0372381 57.023 477 198 2 9 481 13 486 0.0 575
Msa0548720 MtrunA17_Chr8g0384741 51.064 470 227 1 9 478 73 539 3.87e-165 478
Msa0548720 MtrunA17_Chr3g0124811 50.426 470 230 1 9 478 22 488 2.37e-164 474
Msa0548720 MtrunA17_Chr1g0159811 49.882 425 206 2 9 433 20 437 1.24e-140 413
Msa0548720 MtrunA17_Chr3g0129271 55.024 209 92 1 175 381 34 242 2.29e-75 238
Msa0548720 MtrunA17_Chr2g0294411 29.186 442 269 14 12 424 88 514 2.17e-37 145
Msa0548720 MtrunA17_Chr3g0118081 28.889 450 300 10 13 451 90 530 1.27e-36 142
Msa0548720 MtrunA17_Chr2g0310091 29.586 338 224 10 101 431 193 523 1.72e-35 139
Msa0548720 MtrunA17_Chr4g0009161 63.107 103 37 1 174 275 118 220 8.13e-35 130
Msa0548720 MtrunA17_Chr4g0059521 28.918 453 289 13 20 451 60 500 1.52e-34 135
Msa0548720 MtrunA17_Chr3g0118121 28.000 450 304 10 13 451 60 500 3.83e-34 134
Msa0548720 MtrunA17_Chr3g0117861 29.612 412 266 15 38 438 135 533 4.32e-30 123
Msa0548720 MtrunA17_Chr8g0390651 30.114 352 223 12 99 438 154 494 8.45e-30 122
Msa0548720 MtrunA17_Chr4g0059221 29.613 439 282 17 13 438 111 535 1.27e-29 122
Msa0548720 MtrunA17_Chr8g0390631 29.462 353 224 11 99 438 145 485 2.30e-29 120
Msa0548720 MtrunA17_Chr6g0485301 30.682 352 221 12 99 438 153 493 1.34e-28 118
Msa0548720 MtrunA17_Chr8g0365221 30.097 412 264 16 38 438 134 532 4.97e-28 117
Msa0548720 MtrunA17_Chr6g0485311 29.940 334 209 12 104 424 156 477 2.85e-24 105
Msa0548720 MtrunA17_Chr4g0074171 29.063 320 213 10 105 420 158 467 2.65e-22 99.8
Msa0548720 MtrunA17_Chr1g0149961 26.959 319 221 7 105 420 158 467 2.93e-19 90.5
Msa0548720 MtrunA17_Chr4g0049641 26.462 359 229 11 102 440 174 517 4.76e-18 87.0
Msa0548720 MtrunA17_Chr2g0279751 26.257 358 231 10 102 440 147 490 2.90e-17 84.3
Msa0548720 MtrunA17_Chr2g0300801 25.779 353 241 11 102 444 152 493 1.83e-16 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548720 AT4G36250.1 54.105 475 218 0 7 481 10 484 0.0 559
Msa0548720 AT1G44170.1 50.417 480 234 2 1 479 7 483 5.53e-169 486
Msa0548720 AT1G44170.2 50.417 480 234 2 1 479 7 483 5.53e-169 486
Msa0548720 AT4G34240.1 51.059 472 228 1 12 483 82 550 3.52e-163 473
Msa0548720 AT4G34240.4 51.059 472 228 1 12 483 67 535 4.51e-163 472
Msa0548720 AT1G44170.3 52.530 415 194 1 65 479 9 420 2.49e-157 453
Msa0548720 AT4G34240.3 51.951 410 194 1 74 483 2 408 1.34e-146 426
Msa0548720 AT4G34240.2 52.885 312 144 1 12 323 82 390 4.65e-101 308
Msa0548720 AT3G66658.2 26.767 467 313 10 20 462 96 557 1.58e-38 148
Msa0548720 AT3G66658.1 27.149 442 298 9 20 442 96 532 1.65e-38 148
Msa0548720 AT1G74920.2 28.966 435 291 11 27 451 69 495 1.73e-38 147
Msa0548720 AT1G74920.1 28.966 435 291 11 27 451 74 500 1.75e-38 147
Msa0548720 AT1G79440.1 30.267 337 223 9 101 431 184 514 3.67e-37 144
Msa0548720 AT3G48170.1 27.500 440 291 12 27 451 74 500 1.43e-34 136
Msa0548720 AT1G23800.1 27.397 438 293 14 13 438 101 525 9.91e-29 119
Msa0548720 AT3G48000.1 29.310 348 225 9 102 438 192 529 3.79e-27 115
Msa0548720 AT3G24503.1 27.299 348 232 12 102 438 155 492 9.68e-25 107
Msa0548720 AT2G24270.2 27.586 319 219 7 105 420 198 507 1.26e-22 101
Msa0548720 AT2G24270.4 27.003 337 234 7 105 438 158 485 2.36e-22 100
Msa0548720 AT2G24270.3 27.003 337 234 7 105 438 158 485 2.63e-22 100
Msa0548720 AT2G24270.1 27.003 337 234 7 105 438 158 485 2.63e-22 100
Msa0548720 AT1G54100.2 24.716 352 240 10 105 444 154 492 1.47e-18 89.0
Msa0548720 AT1G54100.1 24.716 352 240 10 105 444 154 492 1.47e-18 89.0
Msa0548720 AT1G23800.2 29.242 277 175 12 13 279 101 366 2.86e-13 72.0
Msa0548720 AT2G14170.2 23.059 438 299 12 26 440 58 480 1.41e-11 67.0
Msa0548720 AT2G14170.1 23.007 439 298 12 26 440 167 589 1.47e-11 67.4

Find 121 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTATAATTATGATTATT+TGG 0.060046 4_1:+42997971 Msa0548720:CDS
TGGACTCACTTTCATCTTCT+TGG 0.177885 4_1:+42996379 Msa0548720:CDS
ATGGCCCTCATGCAAGATTT+AGG 0.178064 4_1:+42992593 Msa0548720:CDS
GGATTGGTCCTTGTTATTCT+TGG 0.192443 4_1:+42997993 Msa0548720:CDS
CGAATTCTTGTGGGAAAATA+TGG 0.202081 4_1:+42996854 Msa0548720:CDS
ACACTTTAATGCGAGGTTTA+AGG 0.214130 4_1:-42995382 None:intergenic
TAAAATTTCTTATTATATAA+AGG 0.222774 4_1:-42998200 None:intergenic
TGGGACAAAATCTTCTTTAC+AGG 0.243473 4_1:+42996010 Msa0548720:CDS
TGGAGAGAATCACAACTAAA+AGG 0.259745 4_1:+42992530 Msa0548720:CDS
GTTCAAGAATCTGTTGTTTA+TGG 0.261717 4_1:+42997163 Msa0548720:CDS
CCAAAGAGGTATCAAAATAA+TGG 0.272297 4_1:+42992436 Msa0548720:exon
ATGAAACTTACAGTAATAAT+TGG 0.278416 4_1:-42997371 None:intergenic
TTCATCTTCTTGGGATTTAG+AGG 0.286545 4_1:+42996389 Msa0548720:CDS
CCACCCAACTCCAGTGTTAC+AGG 0.297157 4_1:-42996339 None:intergenic
GGAGTAGGTGGAAGTGGATT+TGG 0.322807 4_1:+42997819 Msa0548720:CDS
TCTTATAATTATGATTATTT+GGG 0.326416 4_1:+42997972 Msa0548720:CDS
TGGCCCTCATGCAAGATTTA+GGG 0.327127 4_1:+42992594 Msa0548720:CDS
TCATTCTGTTCTGCAATGTT+TGG 0.329437 4_1:-42997630 None:intergenic
TTATATTAGAAAATATAAAA+AGG 0.334376 4_1:+42998732 Msa0548720:three_prime_UTR
GGACTCACTTTCATCTTCTT+GGG 0.339156 4_1:+42996380 Msa0548720:CDS
ACATAAAGAGCAAGAGGTTT+AGG 0.345121 4_1:-42997595 None:intergenic
TGCTGGCATTGCCACTTACT+TGG 0.355077 4_1:+42995922 Msa0548720:CDS
TGAGTTTGCAACTCTTATAT+AGG 0.362355 4_1:+42998113 Msa0548720:three_prime_UTR
AAATAGAGGCTTTGTACATT+AGG 0.375102 4_1:-42998244 None:intergenic
TCATCTTGGAATTTGCCCTT+TGG 0.381304 4_1:+42995587 Msa0548720:CDS
CTTGAAAGCAATGCTATTGC+AGG 0.388263 4_1:-42995521 None:intergenic
CATTAAAGTGTCTGAAAGAT+TGG 0.391877 4_1:+42995394 Msa0548720:CDS
CAAAGAGGTATCAAAATAAT+GGG 0.394252 4_1:+42992437 Msa0548720:exon
AAAGAGTTGCTGTTCAAAAC+TGG 0.409001 4_1:+42996925 Msa0548720:CDS
ATTTATTGAGCCAACAATCT+TGG 0.414711 4_1:+42997292 Msa0548720:CDS
GCACCTGACCCCTGTAACAC+TGG 0.415048 4_1:+42996329 Msa0548720:CDS
CTATAGTGTTGGAATGTTGT+GGG 0.417700 4_1:-42997081 None:intergenic
TATCAAAATAATGGGAACTT+TGG 0.423131 4_1:+42992445 Msa0548720:exon
CTTCTCCTTTGAGAAAATTG+AGG 0.428608 4_1:-42998304 None:intergenic
TAATTATGATTATTTGGGAT+TGG 0.431846 4_1:+42997977 Msa0548720:CDS
TTGTCTTTGGAGCCACTGAT+AGG 0.437757 4_1:+42995827 Msa0548720:CDS
GAAAGTGAGTCCACAACTGC+AGG 0.443232 4_1:-42996369 None:intergenic
GTGTGGATCAAGAAAATGTT+TGG 0.443390 4_1:+42997052 Msa0548720:CDS
AGAAATTGTTCATGAGCCTC+TGG 0.445976 4_1:+42995547 Msa0548720:CDS
TTAACTAACAAGGCAAGATC+TGG 0.446747 4_1:-42998037 None:intergenic
ATTGATCGGTTCGAAAATAG+AGG 0.447851 4_1:-42998258 None:intergenic
TGTTCCTCTCTACTTGCTGC+TGG 0.448123 4_1:+42995905 Msa0548720:CDS
GGCTTTATTGTCCAAGTAAG+TGG 0.456241 4_1:-42995933 None:intergenic
AAAAGAGAATGATATATTCA+TGG 0.458500 4_1:+42992574 Msa0548720:CDS
TCGTTCTCATTATTTCATCT+TGG 0.461385 4_1:+42995573 Msa0548720:CDS
ACCCCTGTAACACTGGAGTT+GGG 0.465154 4_1:+42996336 Msa0548720:CDS
TTTGGTGGAGTAGGTGGAAG+TGG 0.473180 4_1:+42997813 Msa0548720:CDS
TGGAAAATGCCCTGCAGTTG+TGG 0.478847 4_1:+42996359 Msa0548720:CDS
TGCCTTGTTAGTTAATTAGC+GGG 0.481989 4_1:+42998045 Msa0548720:exon
TTATAAGGTGGAATTGATGA+AGG 0.484071 4_1:+42997030 Msa0548720:intron
CACCCAACTCCAGTGTTACA+GGG 0.484632 4_1:-42996338 None:intergenic
GCTATAGTGTTGGAATGTTG+TGG 0.485996 4_1:-42997082 None:intergenic
AACTATCCTTGCTATAGTGT+TGG 0.490148 4_1:-42997092 None:intergenic
CAAGAATCTGTTGTTTATGG+TGG 0.492315 4_1:+42997166 Msa0548720:CDS
ATGATATCTGAAACATCATC+TGG 0.495766 4_1:+42997649 Msa0548720:CDS
ACAGTAATAATTGGAAGTAG+TGG 0.495808 4_1:-42997362 None:intergenic
ACTCCAGTGTTACAGGGGTC+AGG 0.499908 4_1:-42996332 None:intergenic
AGCAATGCTATTGCAGGTAG+TGG 0.500402 4_1:-42995515 None:intergenic
TGAAACTTATTTGCAGTCCA+TGG 0.501038 4_1:-42997936 None:intergenic
AGATTGCTCATGTTCGTTGT+GGG 0.501065 4_1:+42998370 Msa0548720:three_prime_UTR
GGAGAGAATCACAACTAAAA+GGG 0.502833 4_1:+42992531 Msa0548720:CDS
TATTGAGCCAACAATCTTGG+TGG 0.503945 4_1:+42997295 Msa0548720:CDS
AGTCTACCATTTGGTGGAGT+AGG 0.504143 4_1:+42997804 Msa0548720:CDS
GCAGCAGATAGTCTACCATT+TGG 0.506468 4_1:+42997795 Msa0548720:CDS
ACATTATTGCTGCATCAAGT+GGG 0.515989 4_1:-42997322 None:intergenic
GAGCAATCTCACAAATCAGT+TGG 0.523332 4_1:-42998356 None:intergenic
AACATTATTGCTGCATCAAG+TGG 0.523734 4_1:-42997323 None:intergenic
CTGATAGGAGCTATAGCTGC+TGG 0.523994 4_1:+42995842 Msa0548720:CDS
GGAAAATATGGAACTTGTGC+TGG 0.526806 4_1:+42996866 Msa0548720:CDS
TTGCCTTGTTAGTTAATTAG+CGG 0.527728 4_1:+42998044 Msa0548720:exon
CATGCAGGAGACAGCTCTGA+AGG 0.542109 4_1:-42995884 None:intergenic
GTGAAAACATAAAGAGCAAG+AGG 0.546456 4_1:-42997601 None:intergenic
TTTGCAGGTGGAGAAGATTG+AGG 0.547084 4_1:+42997546 Msa0548720:intron
GTTTCCCTAAATCTTGCATG+AGG 0.549833 4_1:-42992598 None:intergenic
ATTATGATATTTAATACACT+TGG 0.549941 4_1:+42998582 Msa0548720:three_prime_UTR
AAAGCCATTAAAGTTATCCA+AGG 0.553386 4_1:+42995950 Msa0548720:CDS
AATAATGGGAACTTTGGAGA+TGG 0.556684 4_1:+42992451 Msa0548720:exon
CTACCATTTGGTGGAGTAGG+TGG 0.556973 4_1:+42997807 Msa0548720:CDS
GGCTGTGAAGCGAATTCTTG+TGG 0.558485 4_1:+42996844 Msa0548720:CDS
GTGGATTTGGCATGTACCAT+GGG 0.562857 4_1:+42997832 Msa0548720:CDS
GCAGATAGTCTACCATTTGG+TGG 0.563379 4_1:+42997798 Msa0548720:CDS
CTTCCACCTACTCCACCAAA+TGG 0.564341 4_1:-42997810 None:intergenic
GACCCCTGTAACACTGGAGT+TGG 0.566126 4_1:+42996335 Msa0548720:CDS
CCAAAATATTAATTCCAAAG+AGG 0.566584 4_1:+42992422 None:intergenic
AAATAAGTTTCAACTACTTG+AGG 0.566706 4_1:+42997947 Msa0548720:CDS
GAGATTGCTCATGTTCGTTG+TGG 0.567664 4_1:+42998369 Msa0548720:three_prime_UTR
GTATTGAATTCATAAGCTCT+AGG 0.568775 4_1:+42997572 Msa0548720:CDS
CAGTAATAATTGGAAGTAGT+GGG 0.569529 4_1:-42997361 None:intergenic
AAAGAAAACTAATCATTGAT+CGG 0.573248 4_1:-42998272 None:intergenic
GCAAGTAGAGAGGAACATGC+AGG 0.584046 4_1:-42995899 None:intergenic
AAGCCATTAAAGTTATCCAA+GGG 0.587506 4_1:+42995951 Msa0548720:CDS
TTGGTGACTGAATGTGTCAA+AGG 0.587692 4_1:-42997862 None:intergenic
GCTGTGAAGCGAATTCTTGT+GGG 0.591682 4_1:+42996845 Msa0548720:CDS
AGATTGGATGTCAAGCAAGA+AGG 0.596883 4_1:+42995410 Msa0548720:CDS
AATATCAGGTAGTGCACGAG+TGG 0.599899 4_1:+42996278 Msa0548720:intron
CATTATTGCTGCATCAAGTG+GGG 0.601518 4_1:-42997321 None:intergenic
AGGGTTGCGTCGTTTCCTAG+TGG 0.601929 4_1:+42992550 Msa0548720:CDS
GAAATTGTTCATGAGCCTCT+GGG 0.609785 4_1:+42995548 Msa0548720:CDS
CTTTCAGACACTTTAATGCG+AGG 0.616321 4_1:-42995389 None:intergenic
AGGTGGAATTGATGAAGGTG+TGG 0.618298 4_1:+42997035 Msa0548720:intron
CACCCGCTAATTAACTAACA+AGG 0.618800 4_1:-42998047 None:intergenic
CCTGTAACACTGGAGTTGGG+TGG 0.622351 4_1:+42996339 Msa0548720:CDS
ATATCAGGTAGTGCACGAGT+GGG 0.622510 4_1:+42996279 Msa0548720:intron
AACATTCCAACACTATAGCA+AGG 0.624404 4_1:+42997086 Msa0548720:CDS
AACTTATTTGCAGTCCATGG+TGG 0.626124 4_1:-42997933 None:intergenic
TTTCCCTAAATCTTGCATGA+GGG 0.634134 4_1:-42992597 None:intergenic
AATAATTGGTCGGATTCCTG+TGG 0.634417 4_1:-42995977 None:intergenic
GCAGCTATAGCTCCTATCAG+TGG 0.636960 4_1:-42995839 None:intergenic
AGTGGATTTGGCATGTACCA+TGG 0.640616 4_1:+42997831 Msa0548720:CDS
AATGCCAGCAGCAAGTAGAG+AGG 0.641755 4_1:-42995909 None:intergenic
AAAGTGAGTCCACAACTGCA+GGG 0.644119 4_1:-42996368 None:intergenic
GCCATTAAAGTTATCCAAGG+GGG 0.659849 4_1:+42995953 Msa0548720:CDS
ATTATTGCTGCATCAAGTGG+GGG 0.663599 4_1:-42997320 None:intergenic
TTTGGTATAGATATCCACCA+TGG 0.672421 4_1:+42997919 Msa0548720:CDS
TATCAGGTAGTGCACGAGTG+GGG 0.672922 4_1:+42996280 Msa0548720:intron
CGTCTCTAAAAGCTTCAAGA+CGG 0.673616 4_1:-42992622 None:intergenic
ACCCAACTCCAGTGTTACAG+GGG 0.674549 4_1:-42996337 None:intergenic
AGCCATTAAAGTTATCCAAG+GGG 0.687482 4_1:+42995952 Msa0548720:CDS
TCTTTAATCCAAGAATAACA+AGG 0.695515 4_1:-42998001 None:intergenic
TGTCAAAGGAGAATTTCCCA+TGG 0.698053 4_1:-42997848 None:intergenic
ATAATGAGAACGACACCCAG+AGG 0.731880 4_1:-42995563 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTATTTATTTTTTGGTA+AGG + chr4_1:42992718-42992737 Msa0548720:intron 10.0%
!!! AAAGTTAAATCATTTTTTTA+AGG + chr4_1:42994131-42994150 Msa0548720:intron 10.0%
!! TAAAATTTAGTAATAAATGT+TGG + chr4_1:42994588-42994607 Msa0548720:intron 10.0%
!! TATTATTATATTCATATATC+CGG + chr4_1:42994921-42994940 Msa0548720:intron 10.0%
!!! TTTTATTTTATTTTATAAGG+TGG + chr4_1:42997018-42997037 Msa0548720:intron 10.0%
!! TCTTATAATTATGATTATTT+GGG + chr4_1:42997972-42997991 Msa0548720:CDS 10.0%
!! ATATAAAAAATCATATATCA+AGG - chr4_1:42998718-42998737 None:intergenic 10.0%
!! CAAAAAATAAATAAATTCCT+TGG - chr4_1:42992715-42992734 None:intergenic 15.0%
!!! CAAGGAATTTATTTATTTTT+TGG + chr4_1:42992713-42992732 Msa0548720:intron 15.0%
!!! ATGGATATCTTTTTTTATAT+AGG - chr4_1:42992839-42992858 None:intergenic 15.0%
!!! TTTTATTAATGGTTACTTTA+TGG - chr4_1:42992858-42992877 None:intergenic 15.0%
!!! TATTTTTCTTAACTTTTTCA+TGG - chr4_1:42993023-42993042 None:intergenic 15.0%
!! AATAAATTAGAGATAAACAA+AGG - chr4_1:42993292-42993311 None:intergenic 15.0%
!! TAAAATTTAAACATCACAAA+TGG - chr4_1:42993710-42993729 None:intergenic 15.0%
!!! TCATTTCTCAAATTTTATTT+GGG - chr4_1:42993846-42993865 None:intergenic 15.0%
!!! ATCATTTCTCAAATTTTATT+TGG - chr4_1:42993847-42993866 None:intergenic 15.0%
!! GTATATTTCCTAAAAATAAA+CGG + chr4_1:42994472-42994491 Msa0548720:intron 15.0%
!!! GAAAAGTTAAATCATTTTTA+AGG + chr4_1:42994504-42994523 Msa0548720:intron 15.0%
!! GAAATAATTTACTTTGATAT+AGG + chr4_1:42995490-42995509 Msa0548720:intron 15.0%
!! TTATTGTAAAAACTAATATC+AGG + chr4_1:42996264-42996283 Msa0548720:intron 15.0%
!! TATGCAAAAGATAAAATAAA+GGG - chr4_1:42997522-42997541 None:intergenic 15.0%
!! TTATGCAAAAGATAAAATAA+AGG - chr4_1:42997523-42997542 None:intergenic 15.0%
!! ATTTGAACATTAATATAAAG+TGG - chr4_1:42997738-42997757 None:intergenic 15.0%
!! CTCTTATAATTATGATTATT+TGG + chr4_1:42997971-42997990 Msa0548720:CDS 15.0%
!! ATTATGATATTTAATACACT+TGG + chr4_1:42998582-42998601 Msa0548720:three_prime_UTR 15.0%
!! ATTAGAAAATATAAAAAGGT+AGG + chr4_1:42998736-42998755 Msa0548720:three_prime_UTR 15.0%
!!! AGAATATGAGAGAATATTTT+AGG + chr4_1:42992483-42992502 Msa0548720:CDS 20.0%
!! AAAAGAGAATGATATATTCA+TGG + chr4_1:42992574-42992593 Msa0548720:CDS 20.0%
!! AATAAATAAATTCCTTGGAT+TGG - chr4_1:42992710-42992729 None:intergenic 20.0%
!! AAATAAGATATATAACAGCA+TGG + chr4_1:42992809-42992828 Msa0548720:intron 20.0%
!! AGAGAATAAAACACTATTTA+AGG + chr4_1:42992898-42992917 Msa0548720:intron 20.0%
!! ATTGATCCATATAGATTATA+TGG - chr4_1:42992937-42992956 None:intergenic 20.0%
!! TAGACTCTTTACAAAATAAA+TGG - chr4_1:42993571-42993590 None:intergenic 20.0%
!!! GTGATGTTTAAATTTTATCT+AGG + chr4_1:42993713-42993732 Msa0548720:intron 20.0%
!!! CATTTCTCAAATTTTATTTG+GGG - chr4_1:42993845-42993864 None:intergenic 20.0%
!!! ATTTTTTTCACTCTTCTTAT+TGG - chr4_1:42993945-42993964 None:intergenic 20.0%
!! GTATATCTCCTAAAAATAAA+CGG + chr4_1:42994097-42994116 Msa0548720:intron 20.0%
!!! ACTAAATACCGTTTATTTTT+AGG - chr4_1:42994108-42994127 None:intergenic 20.0%
!! TAAAAATAAACGGTATTTAG+TGG + chr4_1:42994107-42994126 Msa0548720:intron 20.0%
!! GTATATCTCCTAAAAATAAA+CGG + chr4_1:42994097-42994116 Msa0548720:intron 20.0%
!!! ACTAAATACCGTTTATTTTT+AGG - chr4_1:42994108-42994127 None:intergenic 20.0%
!! TAAAAATAAACGGTATTTAG+TGG + chr4_1:42994107-42994126 Msa0548720:intron 20.0%
!!! TCTAAATTCCGTTTATTTTT+AGG - chr4_1:42994483-42994502 None:intergenic 20.0%
!! TAAAAATAAACGGAATTTAG+AGG + chr4_1:42994482-42994501 Msa0548720:intron 20.0%
!!! TATGCTTTTACATTTTTTGT+AGG - chr4_1:42994647-42994666 None:intergenic 20.0%
!! ATTCATTTGATAGAGTATAT+CGG + chr4_1:42994696-42994715 Msa0548720:intron 20.0%
!!! GATATATATTCTCTCTTTTT+TGG - chr4_1:42994799-42994818 None:intergenic 20.0%
!! GTAAATTATTTCGTTATTAG+TGG - chr4_1:42995482-42995501 None:intergenic 20.0%
!! TATATAATTAACTCACCAAA+GGG - chr4_1:42995605-42995624 None:intergenic 20.0%
!! ATTCAATTACTAGAAAAAGT+TGG + chr4_1:42995661-42995680 Msa0548720:intron 20.0%
!! AGAATAACGAAAAAAATTAG+AGG - chr4_1:42995743-42995762 None:intergenic 20.0%
!!! AATAACCAGGTTTTAAATAA+AGG - chr4_1:42996206-42996225 None:intergenic 20.0%
!! CATCTATTACCTTAATTTAT+CGG + chr4_1:42996700-42996719 Msa0548720:intron 20.0%
!!! TTCTTTTATCCGATAAATTA+AGG - chr4_1:42996712-42996731 None:intergenic 20.0%
!! ATTATCAATGTAACAATTTC+TGG + chr4_1:42996809-42996828 Msa0548720:intron 20.0%
!!! ATAATGTTAGATGAAGTTTT+TGG + chr4_1:42997338-42997357 Msa0548720:CDS 20.0%
!! ATGAAACTTACAGTAATAAT+TGG - chr4_1:42997374-42997393 None:intergenic 20.0%
!!! TAATTATGATTATTTGGGAT+TGG + chr4_1:42997977-42997996 Msa0548720:CDS 20.0%
!!! TATATAGGTTGATATGTTTT+CGG + chr4_1:42998128-42998147 Msa0548720:three_prime_UTR 20.0%
!! AAAGAAAACTAATCATTGAT+CGG - chr4_1:42998275-42998294 None:intergenic 20.0%
!!! CAAAGAGGTATCAAAATAAT+GGG + chr4_1:42992437-42992456 Msa0548720:exon 25.0%
!! TATCAAAATAATGGGAACTT+TGG + chr4_1:42992445-42992464 Msa0548720:exon 25.0%
! ACAAAACTATCTAGTTAGTT+AGG + chr4_1:42992786-42992805 Msa0548720:intron 25.0%
!!! GTTTTATTCTCTATAGATGA+AGG - chr4_1:42992890-42992909 None:intergenic 25.0%
! AGTGTTCCATATAATCTATA+TGG + chr4_1:42992928-42992947 Msa0548720:intron 25.0%
!!! TGTCGCTTTAACAAAAATAA+TGG - chr4_1:42993083-42993102 None:intergenic 25.0%
! TATGTCCTTAAATTAAGACA+CGG - chr4_1:42993116-42993135 None:intergenic 25.0%
!! CATTTTTCTTGACAACTTTT+GGG + chr4_1:42993878-42993897 Msa0548720:intron 25.0%
! TATATATGGTTTATAGCATG+AGG - chr4_1:42994009-42994028 None:intergenic 25.0%
!! TCTACTAAAATTGTCTTGTT+TGG - chr4_1:42994035-42994054 None:intergenic 25.0%
!!! TCTACTAAAATCGTTTTGTT+TGG - chr4_1:42994376-42994395 None:intergenic 25.0%
!!! TTTTTGGTCAAGTAATATAG+TGG - chr4_1:42994783-42994802 None:intergenic 25.0%
! GTATATAATTAACTCACCAA+AGG - chr4_1:42995606-42995625 None:intergenic 25.0%
! GAGGTGGAAAAAAATAAATT+TGG - chr4_1:42995724-42995743 None:intergenic 25.0%
! ATAACGAAAAAAATTAGAGG+TGG - chr4_1:42995740-42995759 None:intergenic 25.0%
!! GTTAGAGTCTTCATAAATTT+TGG + chr4_1:42995763-42995782 Msa0548720:intron 25.0%
! TGTAACCAATAAAAAAACAC+AGG + chr4_1:42995803-42995822 Msa0548720:intron 25.0%
!!! ACAATCCTGTGTTTTTTTAT+TGG - chr4_1:42995811-42995830 None:intergenic 25.0%
!!! TTTTTGCTGTAATAATTGGT+CGG - chr4_1:42995990-42996009 None:intergenic 25.0%
! ACCAATTATTACAGCAAAAA+TGG + chr4_1:42995990-42996009 Msa0548720:CDS 25.0%
! CCAATTATTACAGCAAAAAT+GGG + chr4_1:42995991-42996010 Msa0548720:CDS 25.0%
! AAATATATAGTAAAACCCGA+TGG - chr4_1:42996578-42996597 None:intergenic 25.0%
! ATAGAGAATCAAATAGAAGA+AGG - chr4_1:42996672-42996691 None:intergenic 25.0%
! TATCGGATAAAAGAAAACAA+CGG + chr4_1:42996717-42996736 Msa0548720:intron 25.0%
!! CTTAATCAAATGTAACTTGT+GGG - chr4_1:42996776-42996795 None:intergenic 25.0%
! ACTTAATCAAATGTAACTTG+TGG - chr4_1:42996777-42996796 None:intergenic 25.0%
! CAAGTTACATTTGATTAAGT+TGG + chr4_1:42996777-42996796 Msa0548720:intron 25.0%
!!! AACAATTTCTGGTGATTATA+AGG + chr4_1:42996820-42996839 Msa0548720:intron 25.0%
! TAGGAATATTAGTATGTGAA+AGG - chr4_1:42997228-42997247 None:intergenic 25.0%
!!! TTTTTTGGTGATAGGAATTT+AGG - chr4_1:42997247-42997266 None:intergenic 25.0%
!! ATGACTATTTTACAAATGTC+TGG + chr4_1:42997413-42997432 Msa0548720:intron 25.0%
!! TATTTTACAAATGTCTGGTA+TGG + chr4_1:42997418-42997437 Msa0548720:intron 25.0%
! AAAAGATAGATATAAGCATG+TGG - chr4_1:42997485-42997504 None:intergenic 25.0%
!!! TCTTTTGCATAATAATTTGC+AGG + chr4_1:42997531-42997550 Msa0548720:intron 25.0%
!!! TTCTTCTAACAATTGCTTTT+TGG - chr4_1:42997884-42997903 None:intergenic 25.0%
!!! GAAGTTTCTTAACTGATTTT+TGG + chr4_1:42997901-42997920 Msa0548720:CDS 25.0%
! AAATAAGTTTCAACTACTTG+AGG + chr4_1:42997947-42997966 Msa0548720:CDS 25.0%
! TCTTTAATCCAAGAATAACA+AGG - chr4_1:42998004-42998023 None:intergenic 25.0%
!!! CCATTATTTTGATACCTCTT+TGG - chr4_1:42992439-42992458 None:intergenic 30.0%
!! CCAAAGAGGTATCAAAATAA+TGG + chr4_1:42992436-42992455 Msa0548720:exon 30.0%
!! ATGAGAGAATATTTTAGGAG+TGG + chr4_1:42992488-42992507 Msa0548720:CDS 30.0%
!! GAAAAACAAAAGAAGCATCT+TGG + chr4_1:42992510-42992529 Msa0548720:CDS 30.0%
! TATCATTCTCTTTTTCCACT+AGG - chr4_1:42992568-42992587 None:intergenic 30.0%
GAACCATATATATGTGTGTA+CGG - chr4_1:42992760-42992779 None:intergenic 30.0%
ACACATATATATGGTTCATG+AGG + chr4_1:42992763-42992782 Msa0548720:intron 30.0%
! GGTGCACAACTTTTTATTAA+TGG - chr4_1:42992869-42992888 None:intergenic 30.0%
TATGGATCAATGCTTGAAAA+TGG + chr4_1:42992946-42992965 Msa0548720:intron 30.0%
GACCTATGAATTGAACTTAT+CGG + chr4_1:42993142-42993161 Msa0548720:intron 30.0%
TTTGTTAAGCAAAGTTATGC+GGG - chr4_1:42993262-42993281 None:intergenic 30.0%
! GTTTGTTAAGCAAAGTTATG+CGG - chr4_1:42993263-42993282 None:intergenic 30.0%
GTGCATTAACATGTATGAAA+TGG - chr4_1:42993349-42993368 None:intergenic 30.0%
CCAAAAGTTGTCAAGAAAAA+TGG - chr4_1:42993880-42993899 None:intergenic 30.0%
!! CCATTTTTCTTGACAACTTT+TGG + chr4_1:42993877-42993896 Msa0548720:intron 30.0%
!! GTCTTGTTTGGTTGTATATA+TGG - chr4_1:42994023-42994042 None:intergenic 30.0%
!!! AATCGTTTTGTTTGGTTGTA+TGG - chr4_1:42994195-42994214 None:intergenic 30.0%
! CAACCAAACAAAACGATTTT+AGG + chr4_1:42994197-42994216 Msa0548720:intron 30.0%
!! TCTCCTAAAATCGTTTTGTT+TGG - chr4_1:42994203-42994222 None:intergenic 30.0%
! TTGTTTGGTTGTATGGTTTT+TGG - chr4_1:42994361-42994380 None:intergenic 30.0%
!!! AATCGTTTTGTTTGGTTGTA+TGG - chr4_1:42994195-42994214 None:intergenic 30.0%
ATTTGATAGAGTATATCGGT+AGG + chr4_1:42994700-42994719 Msa0548720:intron 30.0%
! GTCTAAAGCAATGATTATTC+CGG - chr4_1:42994943-42994962 None:intergenic 30.0%
ATAGAACAAACACCGTTATA+AGG + chr4_1:42995060-42995079 Msa0548720:intron 30.0%
!! TTTGCTTTTCTGCCTTATAA+CGG - chr4_1:42995075-42995094 None:intergenic 30.0%
TACTAAATCCATTCACAGAT+AGG + chr4_1:42995345-42995364 Msa0548720:intron 30.0%
! CATTAAAGTGTCTGAAAGAT+TGG + chr4_1:42995394-42995413 Msa0548720:CDS 30.0%
TCGTTCTCATTATTTCATCT+TGG + chr4_1:42995573-42995592 Msa0548720:CDS 30.0%
ACTAGAAAAAGTTGGAACAA+CGG + chr4_1:42995669-42995688 Msa0548720:intron 30.0%
AAAAAACACAGGATTGTCTT+TGG + chr4_1:42995814-42995833 Msa0548720:intron 30.0%
AAAGCCATTAAAGTTATCCA+AGG + chr4_1:42995950-42995969 Msa0548720:CDS 30.0%
AAGCCATTAAAGTTATCCAA+GGG + chr4_1:42995951-42995970 Msa0548720:CDS 30.0%
!! CCCATTTTTGCTGTAATAAT+TGG - chr4_1:42995994-42996013 None:intergenic 30.0%
AGTGGCGATGAAAAATATTT+GGG - chr4_1:42996045-42996064 None:intergenic 30.0%
AAGTGGCGATGAAAAATATT+TGG - chr4_1:42996046-42996065 None:intergenic 30.0%
ATCTGCTCAAAATCTAAAAG+TGG - chr4_1:42996063-42996082 None:intergenic 30.0%
! CAGATTTTAAATTGCAGTCA+CGG + chr4_1:42996078-42996097 Msa0548720:intron 30.0%
!!! GTGACATTCATGTTTTAATG+TGG + chr4_1:42996106-42996125 Msa0548720:intron 30.0%
TTATGAAGCAGTGCAAATTA+TGG + chr4_1:42996173-42996192 Msa0548720:intron 30.0%
!!! TTTTAGGTTTCTAAGTCCAT+CGG + chr4_1:42996559-42996578 Msa0548720:intron 30.0%
GAATAACACAACAACAGTAA+CGG - chr4_1:42996650-42996669 None:intergenic 30.0%
!! AATTTCTGGTGATTATAAGG+TGG + chr4_1:42996823-42996842 Msa0548720:intron 30.0%
TTATAAGGTGGAATTGATGA+AGG + chr4_1:42997030-42997049 Msa0548720:intron 30.0%
! GTTCAAGAATCTGTTGTTTA+TGG + chr4_1:42997163-42997182 Msa0548720:CDS 30.0%
ATATTAGTATGTGAAAGGCA+GGG - chr4_1:42997223-42997242 None:intergenic 30.0%
AATATTAGTATGTGAAAGGC+AGG - chr4_1:42997224-42997243 None:intergenic 30.0%
!!! CATGTTGTTTTTTTGGTGAT+AGG - chr4_1:42997255-42997274 None:intergenic 30.0%
!!! TTGAGCACATGTTGTTTTTT+TGG - chr4_1:42997262-42997281 None:intergenic 30.0%
ATTTATTGAGCCAACAATCT+TGG + chr4_1:42997292-42997311 Msa0548720:CDS 30.0%
CAGTAATAATTGGAAGTAGT+GGG - chr4_1:42997364-42997383 None:intergenic 30.0%
ACAGTAATAATTGGAAGTAG+TGG - chr4_1:42997365-42997384 None:intergenic 30.0%
! TTTGCATAATAATTTGCAGG+TGG + chr4_1:42997534-42997553 Msa0548720:intron 30.0%
GTATTGAATTCATAAGCTCT+AGG + chr4_1:42997572-42997591 Msa0548720:CDS 30.0%
! ATGATATCTGAAACATCATC+TGG + chr4_1:42997649-42997668 Msa0548720:CDS 30.0%
! TTGCCTTGTTAGTTAATTAG+CGG + chr4_1:42998044-42998063 Msa0548720:exon 30.0%
TGAGTTTGCAACTCTTATAT+AGG + chr4_1:42998113-42998132 Msa0548720:three_prime_UTR 30.0%
! AAATAGAGGCTTTGTACATT+AGG - chr4_1:42998247-42998266 None:intergenic 30.0%
! CTTATCCTCAATTTTCTCAA+AGG + chr4_1:42998299-42998318 Msa0548720:three_prime_UTR 30.0%
! AATAATGGGAACTTTGGAGA+TGG + chr4_1:42992451-42992470 Msa0548720:exon 35.0%
TGGAGAGAATCACAACTAAA+AGG + chr4_1:42992530-42992549 Msa0548720:CDS 35.0%
GGAGAGAATCACAACTAAAA+GGG + chr4_1:42992531-42992550 Msa0548720:CDS 35.0%
TTTCCCTAAATCTTGCATGA+GGG - chr4_1:42992600-42992619 None:intergenic 35.0%
! TAGACAGATTTTCCAATCCA+AGG + chr4_1:42992695-42992714 Msa0548720:intron 35.0%
ATATGTGTGTACGGATCATT+TGG - chr4_1:42992751-42992770 None:intergenic 35.0%
GATCCGTACACACATATATA+TGG + chr4_1:42992754-42992773 Msa0548720:intron 35.0%
! AATGAGCTTTTACTTGAACG+TGG - chr4_1:42992993-42993012 None:intergenic 35.0%
AATTAAGACACGGACTTGAT+TGG - chr4_1:42993106-42993125 None:intergenic 35.0%
CAAGTCCGTGTCTTAATTTA+AGG + chr4_1:42993108-42993127 Msa0548720:intron 35.0%
GACCGATAAGTTCAATTCAT+AGG - chr4_1:42993147-42993166 None:intergenic 35.0%
CATTTACACGAGAATAGCTA+GGG + chr4_1:42993236-42993255 Msa0548720:intron 35.0%
AACTTTGCTTAACAAACCCT+TGG + chr4_1:42993266-42993285 Msa0548720:intron 35.0%
TAGAGATAAACAAAGGCCAA+GGG - chr4_1:42993285-42993304 None:intergenic 35.0%
TTAGAGATAAACAAAGGCCA+AGG - chr4_1:42993286-42993305 None:intergenic 35.0%
! GAGAAGTGTGGTGTTTAAAT+CGG + chr4_1:42993620-42993639 Msa0548720:intron 35.0%
!! AAATTTTATTTGGGGAGACG+AGG - chr4_1:42993837-42993856 None:intergenic 35.0%
! TTTTTGTAGGATCGCTTCAA+TGG - chr4_1:42994634-42994653 None:intergenic 35.0%
TACCTCTAAACGTGAATAAG+TGG - chr4_1:42994751-42994770 None:intergenic 35.0%
ACTAGATCGAAGTGATCTAA+CGG + chr4_1:42995003-42995022 Msa0548720:intron 35.0%
ACTAGATCGAAGTGATCTAA+CGG + chr4_1:42995003-42995022 Msa0548720:intron 35.0%
ATCGAACAAACACCGTTATA+AGG + chr4_1:42995241-42995260 Msa0548720:intron 35.0%
!! TTTGCTTTTCCGCCTTATAA+CGG - chr4_1:42995256-42995275 None:intergenic 35.0%
ACACTTTAATGCGAGGTTTA+AGG - chr4_1:42995385-42995404 None:intergenic 35.0%
CAACGGCAAAAATTTAGAGA+CGG + chr4_1:42995686-42995705 Msa0548720:intron 35.0%
AGCCATTAAAGTTATCCAAG+GGG + chr4_1:42995952-42995971 Msa0548720:CDS 35.0%
TGGGACAAAATCTTCTTTAC+AGG + chr4_1:42996010-42996029 Msa0548720:CDS 35.0%
CAAGAGACTCATAAATAACC+AGG - chr4_1:42996219-42996238 None:intergenic 35.0%
TTCATCTTCTTGGGATTTAG+AGG + chr4_1:42996389-42996408 Msa0548720:CDS 35.0%
! GATGGACTTAGAAACCTAAA+AGG - chr4_1:42996560-42996579 None:intergenic 35.0%
! TTTAGGTTTCTAAGTCCATC+GGG + chr4_1:42996560-42996579 Msa0548720:intron 35.0%
ACAACGGCATGACATAATAA+AGG - chr4_1:42996609-42996628 None:intergenic 35.0%
AGGGCTTCATAAGATTACAA+CGG - chr4_1:42996625-42996644 None:intergenic 35.0%
AACAACGGTAACAAACTTGT+TGG + chr4_1:42996732-42996751 Msa0548720:intron 35.0%
CGAATTCTTGTGGGAAAATA+TGG + chr4_1:42996854-42996873 Msa0548720:CDS 35.0%
! AAAGAGTTGCTGTTCAAAAC+TGG + chr4_1:42996925-42996944 Msa0548720:CDS 35.0%
GTGTGGATCAAGAAAATGTT+TGG + chr4_1:42997052-42997071 Msa0548720:CDS 35.0%
! CTATAGTGTTGGAATGTTGT+GGG - chr4_1:42997084-42997103 None:intergenic 35.0%
AACATTCCAACACTATAGCA+AGG + chr4_1:42997086-42997105 Msa0548720:CDS 35.0%
! AACTATCCTTGCTATAGTGT+TGG - chr4_1:42997095-42997114 None:intergenic 35.0%
! CAAGAATCTGTTGTTTATGG+TGG + chr4_1:42997166-42997185 Msa0548720:CDS 35.0%
ACATTATTGCTGCATCAAGT+GGG - chr4_1:42997325-42997344 None:intergenic 35.0%
AACATTATTGCTGCATCAAG+TGG - chr4_1:42997326-42997345 None:intergenic 35.0%
ACATAAAGAGCAAGAGGTTT+AGG - chr4_1:42997598-42997617 None:intergenic 35.0%
GTGAAAACATAAAGAGCAAG+AGG - chr4_1:42997604-42997623 None:intergenic 35.0%
!!! GTTCTGCAATGTTTGGTTTT+TGG - chr4_1:42997626-42997645 None:intergenic 35.0%
TCATTCTGTTCTGCAATGTT+TGG - chr4_1:42997633-42997652 None:intergenic 35.0%
TTTGGTATAGATATCCACCA+TGG + chr4_1:42997919-42997938 Msa0548720:CDS 35.0%
TGAAACTTATTTGCAGTCCA+TGG - chr4_1:42997939-42997958 None:intergenic 35.0%
TTAACTAACAAGGCAAGATC+TGG - chr4_1:42998040-42998059 None:intergenic 35.0%
! TGCCTTGTTAGTTAATTAGC+GGG + chr4_1:42998045-42998064 Msa0548720:exon 35.0%
!! ATTGATCGGTTCGAAAATAG+AGG - chr4_1:42998261-42998280 None:intergenic 35.0%
! CTTCTCCTTTGAGAAAATTG+AGG - chr4_1:42998307-42998326 None:intergenic 35.0%
GTTTCCCTAAATCTTGCATG+AGG - chr4_1:42992601-42992620 None:intergenic 40.0%
! CGTCTCTAAAAGCTTCAAGA+CGG - chr4_1:42992625-42992644 None:intergenic 40.0%
!! TCTTGAAGCTTTTAGAGACG+AGG + chr4_1:42992625-42992644 Msa0548720:CDS 40.0%
GCATTTACACGAGAATAGCT+AGG + chr4_1:42993235-42993254 Msa0548720:intron 40.0%
CACTAAATGACTGAGAAGTG+TGG + chr4_1:42993608-42993627 Msa0548720:intron 40.0%
GGTGGATAGTATGATATTGG+TGG - chr4_1:42993816-42993835 None:intergenic 40.0%
CGAGGTGGATAGTATGATAT+TGG - chr4_1:42993819-42993838 None:intergenic 40.0%
TAGAGTATATCGGTAGGAGT+TGG + chr4_1:42994706-42994725 Msa0548720:intron 40.0%
AGAGTATATCGGTAGGAGTT+GGG + chr4_1:42994707-42994726 Msa0548720:intron 40.0%
GTGAATAAGTGGCGAATCTT+AGG - chr4_1:42994740-42994759 None:intergenic 40.0%
GAACAAACACCGTTATAAGG+CGG + chr4_1:42995063-42995082 Msa0548720:intron 40.0%
CTAACGTTCCTATCTGTGAA+TGG - chr4_1:42995356-42995375 None:intergenic 40.0%
CTTTCAGACACTTTAATGCG+AGG - chr4_1:42995392-42995411 None:intergenic 40.0%
AGATTGGATGTCAAGCAAGA+AGG + chr4_1:42995410-42995429 Msa0548720:CDS 40.0%
CTTGAAAGCAATGCTATTGC+AGG - chr4_1:42995524-42995543 None:intergenic 40.0%
AGAAATTGTTCATGAGCCTC+TGG + chr4_1:42995547-42995566 Msa0548720:CDS 40.0%
GAAATTGTTCATGAGCCTCT+GGG + chr4_1:42995548-42995567 Msa0548720:CDS 40.0%
TCATCTTGGAATTTGCCCTT+TGG + chr4_1:42995587-42995606 Msa0548720:CDS 40.0%
!! GGCTTTATTGTCCAAGTAAG+TGG - chr4_1:42995936-42995955 None:intergenic 40.0%
GCCATTAAAGTTATCCAAGG+GGG + chr4_1:42995953-42995972 Msa0548720:CDS 40.0%
TCCCCCTTGGATAACTTTAA+TGG - chr4_1:42995957-42995976 None:intergenic 40.0%
AATAATTGGTCGGATTCCTG+TGG - chr4_1:42995980-42995999 None:intergenic 40.0%
TTAAATTGCAGTCACGGCAA+CGG + chr4_1:42996084-42996103 Msa0548720:intron 40.0%
TAATGTGGCCTCAATTGCAA+CGG + chr4_1:42996121-42996140 Msa0548720:intron 40.0%
! GCGGACCTTTATTTAAAACC+TGG + chr4_1:42996198-42996217 Msa0548720:intron 40.0%
TGGACTCACTTTCATCTTCT+TGG + chr4_1:42996379-42996398 Msa0548720:CDS 40.0%
GGACTCACTTTCATCTTCTT+GGG + chr4_1:42996380-42996399 Msa0548720:CDS 40.0%
GGAAAATATGGAACTTGTGC+TGG + chr4_1:42996866-42996885 Msa0548720:CDS 40.0%
! GCTATAGTGTTGGAATGTTG+TGG - chr4_1:42997085-42997104 None:intergenic 40.0%
TATTGAGCCAACAATCTTGG+TGG + chr4_1:42997295-42997314 Msa0548720:CDS 40.0%
ATTATTGCTGCATCAAGTGG+GGG - chr4_1:42997323-42997342 None:intergenic 40.0%
CATTATTGCTGCATCAAGTG+GGG - chr4_1:42997324-42997343 None:intergenic 40.0%
TGTCAAAGGAGAATTTCCCA+TGG - chr4_1:42997851-42997870 None:intergenic 40.0%
! TTGGTGACTGAATGTGTCAA+AGG - chr4_1:42997865-42997884 None:intergenic 40.0%
AACTTATTTGCAGTCCATGG+TGG - chr4_1:42997936-42997955 None:intergenic 40.0%
!! GGATTGGTCCTTGTTATTCT+TGG + chr4_1:42997993-42998012 Msa0548720:CDS 40.0%
CACCCGCTAATTAACTAACA+AGG - chr4_1:42998050-42998069 None:intergenic 40.0%
GAGCAATCTCACAAATCAGT+TGG - chr4_1:42998359-42998378 None:intergenic 40.0%
AGATTGCTCATGTTCGTTGT+GGG + chr4_1:42998370-42998389 Msa0548720:three_prime_UTR 40.0%
ATGGCCCTCATGCAAGATTT+AGG + chr4_1:42992593-42992612 Msa0548720:CDS 45.0%
TGGCCCTCATGCAAGATTTA+GGG + chr4_1:42992594-42992613 Msa0548720:CDS 45.0%
! TCGGCGCTTCAAGATTTGTT+AGG + chr4_1:42993639-42993658 Msa0548720:intron 45.0%
!! TTTTATTTGGGGAGACGAGG+TGG - chr4_1:42993834-42993853 None:intergenic 45.0%
GAGTATATCGGTAGGAGTTG+GGG + chr4_1:42994708-42994727 Msa0548720:intron 45.0%
CGCCACTTATTCACGTTTAG+AGG + chr4_1:42994746-42994765 Msa0548720:intron 45.0%
! TTTTGTTCGTCGTTGTGCAG+TGG - chr4_1:42995104-42995123 None:intergenic 45.0%
GGTGTTTGTTCGATTCAGAC+TGG - chr4_1:42995235-42995254 None:intergenic 45.0%
AGCAATGCTATTGCAGGTAG+TGG - chr4_1:42995518-42995537 None:intergenic 45.0%
ATAATGAGAACGACACCCAG+AGG - chr4_1:42995566-42995585 None:intergenic 45.0%
!! TTGTCTTTGGAGCCACTGAT+AGG + chr4_1:42995827-42995846 Msa0548720:CDS 45.0%
AGCAGTGCAAATTATGGCTG+CGG + chr4_1:42996179-42996198 Msa0548720:intron 45.0%
AATATCAGGTAGTGCACGAG+TGG + chr4_1:42996278-42996297 Msa0548720:intron 45.0%
ATATCAGGTAGTGCACGAGT+GGG + chr4_1:42996279-42996298 Msa0548720:intron 45.0%
AAAGTGAGTCCACAACTGCA+GGG - chr4_1:42996371-42996390 None:intergenic 45.0%
CGAGCGTGTTATCAAGGATT+GGG - chr4_1:42996451-42996470 None:intergenic 45.0%
TCGAGCGTGTTATCAAGGAT+TGG - chr4_1:42996452-42996471 None:intergenic 45.0%
! GCTCTGTTGTTGTGCCTTTT+AGG + chr4_1:42996543-42996562 Msa0548720:intron 45.0%
CACAACAACAGTAACGGCTA+GGG - chr4_1:42996644-42996663 None:intergenic 45.0%
ACACAACAACAGTAACGGCT+AGG - chr4_1:42996645-42996664 None:intergenic 45.0%
GCTGTGAAGCGAATTCTTGT+GGG + chr4_1:42996845-42996864 Msa0548720:CDS 45.0%
AGGTGGAATTGATGAAGGTG+TGG + chr4_1:42997035-42997054 Msa0548720:intron 45.0%
TTTGCAGGTGGAGAAGATTG+AGG + chr4_1:42997546-42997565 Msa0548720:intron 45.0%
GCAGCAGATAGTCTACCATT+TGG + chr4_1:42997795-42997814 Msa0548720:CDS 45.0%
GCAGATAGTCTACCATTTGG+TGG + chr4_1:42997798-42997817 Msa0548720:CDS 45.0%
! AGTCTACCATTTGGTGGAGT+AGG + chr4_1:42997804-42997823 Msa0548720:CDS 45.0%
! AGTGGATTTGGCATGTACCA+TGG + chr4_1:42997831-42997850 Msa0548720:CDS 45.0%
GTGGATTTGGCATGTACCAT+GGG + chr4_1:42997832-42997851 Msa0548720:CDS 45.0%
GAGATTGCTCATGTTCGTTG+TGG + chr4_1:42998369-42998388 Msa0548720:three_prime_UTR 45.0%
!!! ATATTATAAGTTTTTTTTTT+TGG + chr4_1:42993480-42993499 Msa0548720:intron 5.0%
!!! AAAGTTAAATAATTATTTTA+AGG + chr4_1:42994300-42994319 Msa0548720:intron 5.0%
!!! TTGTTTTATTTTATTTTATA+AGG + chr4_1:42997015-42997034 Msa0548720:intron 5.0%
!! TAAAATTTCTTATTATATAA+AGG - chr4_1:42998203-42998222 None:intergenic 5.0%
!! TTATATTAGAAAATATAAAA+AGG + chr4_1:42998732-42998751 Msa0548720:three_prime_UTR 5.0%
GCAGCTATAGCTCCTATCAG+TGG - chr4_1:42995842-42995861 None:intergenic 50.0%
CTGATAGGAGCTATAGCTGC+TGG + chr4_1:42995842-42995861 Msa0548720:CDS 50.0%
GCAAGTAGAGAGGAACATGC+AGG - chr4_1:42995902-42995921 None:intergenic 50.0%
! TGTTCCTCTCTACTTGCTGC+TGG + chr4_1:42995905-42995924 Msa0548720:CDS 50.0%
AATGCCAGCAGCAAGTAGAG+AGG - chr4_1:42995912-42995931 None:intergenic 50.0%
! TGCTGGCATTGCCACTTACT+TGG + chr4_1:42995922-42995941 Msa0548720:CDS 50.0%
! TTGCAACGGCGCTGTAGTTT+TGG + chr4_1:42996135-42996154 Msa0548720:intron 50.0%
TATCAGGTAGTGCACGAGTG+GGG + chr4_1:42996280-42996299 Msa0548720:intron 50.0%
ACCCCTGTAACACTGGAGTT+GGG + chr4_1:42996336-42996355 Msa0548720:CDS 50.0%
ACCCAACTCCAGTGTTACAG+GGG - chr4_1:42996340-42996359 None:intergenic 50.0%
CACCCAACTCCAGTGTTACA+GGG - chr4_1:42996341-42996360 None:intergenic 50.0%
TGGAAAATGCCCTGCAGTTG+TGG + chr4_1:42996359-42996378 Msa0548720:CDS 50.0%
GAAAGTGAGTCCACAACTGC+AGG - chr4_1:42996372-42996391 None:intergenic 50.0%
GGCTGTGAAGCGAATTCTTG+TGG + chr4_1:42996844-42996863 Msa0548720:CDS 50.0%
! CTACCATTTGGTGGAGTAGG+TGG + chr4_1:42997807-42997826 Msa0548720:CDS 50.0%
CTTCCACCTACTCCACCAAA+TGG - chr4_1:42997813-42997832 None:intergenic 50.0%
TTTGGTGGAGTAGGTGGAAG+TGG + chr4_1:42997813-42997832 Msa0548720:CDS 50.0%
! GGAGTAGGTGGAAGTGGATT+TGG + chr4_1:42997819-42997838 Msa0548720:CDS 50.0%
! GGCAAGATCTGGCGTTTTGA+TGG - chr4_1:42998029-42998048 None:intergenic 50.0%
AGGGTTGCGTCGTTTCCTAG+TGG + chr4_1:42992550-42992569 Msa0548720:CDS 55.0%
TGTTCGTCGTCGTTGTGCAG+TGG - chr4_1:42995285-42995304 None:intergenic 55.0%
! CATGCAGGAGACAGCTCTGA+AGG - chr4_1:42995887-42995906 None:intergenic 55.0%
AGTTATCCAAGGGGGACCAC+AGG + chr4_1:42995961-42995980 Msa0548720:CDS 55.0%
CTACAGCGCCGTTGCAATTG+AGG - chr4_1:42996132-42996151 None:intergenic 55.0%
ACTCCAGTGTTACAGGGGTC+AGG - chr4_1:42996335-42996354 None:intergenic 55.0%
GACCCCTGTAACACTGGAGT+TGG + chr4_1:42996335-42996354 Msa0548720:CDS 55.0%
CCACCCAACTCCAGTGTTAC+AGG - chr4_1:42996342-42996361 None:intergenic 55.0%
CCTGTAACACTGGAGTTGGG+TGG + chr4_1:42996339-42996358 Msa0548720:CDS 55.0%
CACGCTCGAGCGTGTTATCA+AGG - chr4_1:42996457-42996476 None:intergenic 55.0%
! CTTGATAACACGCTCGAGCG+TGG + chr4_1:42996455-42996474 Msa0548720:intron 55.0%
! GAGCGTGGCAGAAAGTGCAA+GGG + chr4_1:42996470-42996489 Msa0548720:intron 55.0%
GGGGGATCCACCAAGATTGT+TGG - chr4_1:42997305-42997324 None:intergenic 55.0%
GCACCTGACCCCTGTAACAC+TGG + chr4_1:42996329-42996348 Msa0548720:CDS 60.0%
! CGAGCGTGGCAGAAAGTGCA+AGG + chr4_1:42996469-42996488 Msa0548720:intron 60.0%
CGGATTCCTGTGGTCCCCCT+TGG - chr4_1:42995970-42995989 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 42992431 42998766 42992431 ID=Msa0548720;Name=Msa0548720
chr4_1 mRNA 42992431 42998766 42992431 ID=Msa0548720-mRNA-1;Parent=Msa0548720;Name=Msa0548720-mRNA-1;_AED=0.10;_eAED=0.10;_QI=24|1|1|1|0.9|0.81|11|611|490
chr4_1 exon 42992431 42992646 42992431 ID=Msa0548720-mRNA-1:exon:11124;Parent=Msa0548720-mRNA-1
chr4_1 exon 42995363 42995431 42995363 ID=Msa0548720-mRNA-1:exon:11125;Parent=Msa0548720-mRNA-1
chr4_1 exon 42995512 42995608 42995512 ID=Msa0548720-mRNA-1:exon:11126;Parent=Msa0548720-mRNA-1
chr4_1 exon 42995825 42996031 42995825 ID=Msa0548720-mRNA-1:exon:11127;Parent=Msa0548720-mRNA-1
chr4_1 exon 42996286 42996410 42996286 ID=Msa0548720-mRNA-1:exon:11128;Parent=Msa0548720-mRNA-1
chr4_1 exon 42996842 42996946 42996842 ID=Msa0548720-mRNA-1:exon:11129;Parent=Msa0548720-mRNA-1
chr4_1 exon 42997037 42997209 42997037 ID=Msa0548720-mRNA-1:exon:11130;Parent=Msa0548720-mRNA-1
chr4_1 exon 42997292 42997382 42997292 ID=Msa0548720-mRNA-1:exon:11131;Parent=Msa0548720-mRNA-1
chr4_1 exon 42997553 42997702 42997553 ID=Msa0548720-mRNA-1:exon:11132;Parent=Msa0548720-mRNA-1
chr4_1 exon 42997792 42998613 42997792 ID=Msa0548720-mRNA-1:exon:11133;Parent=Msa0548720-mRNA-1
chr4_1 exon 42998714 42998766 42998714 ID=Msa0548720-mRNA-1:exon:11134;Parent=Msa0548720-mRNA-1
chr4_1 five_prime_UTR 42992431 42992454 42992431 ID=Msa0548720-mRNA-1:five_prime_utr;Parent=Msa0548720-mRNA-1
chr4_1 CDS 42992455 42992646 42992455 ID=Msa0548720-mRNA-1:cds;Parent=Msa0548720-mRNA-1
chr4_1 CDS 42995363 42995431 42995363 ID=Msa0548720-mRNA-1:cds;Parent=Msa0548720-mRNA-1
chr4_1 CDS 42995512 42995608 42995512 ID=Msa0548720-mRNA-1:cds;Parent=Msa0548720-mRNA-1
chr4_1 CDS 42995825 42996031 42995825 ID=Msa0548720-mRNA-1:cds;Parent=Msa0548720-mRNA-1
chr4_1 CDS 42996286 42996410 42996286 ID=Msa0548720-mRNA-1:cds;Parent=Msa0548720-mRNA-1
chr4_1 CDS 42996842 42996946 42996842 ID=Msa0548720-mRNA-1:cds;Parent=Msa0548720-mRNA-1
chr4_1 CDS 42997037 42997209 42997037 ID=Msa0548720-mRNA-1:cds;Parent=Msa0548720-mRNA-1
chr4_1 CDS 42997292 42997382 42997292 ID=Msa0548720-mRNA-1:cds;Parent=Msa0548720-mRNA-1
chr4_1 CDS 42997553 42997702 42997553 ID=Msa0548720-mRNA-1:cds;Parent=Msa0548720-mRNA-1
chr4_1 CDS 42997792 42998055 42997792 ID=Msa0548720-mRNA-1:cds;Parent=Msa0548720-mRNA-1
chr4_1 three_prime_UTR 42998056 42998613 42998056 ID=Msa0548720-mRNA-1:three_prime_utr;Parent=Msa0548720-mRNA-1
chr4_1 three_prime_UTR 42998714 42998766 42998714 ID=Msa0548720-mRNA-1:three_prime_utr;Parent=Msa0548720-mRNA-1
Gene Sequence

>Msa0548720

ATGGGAACTTTGGAGATGGATCATCTAAAGAATATGAGAGAATATTTTAGGAGTGGAAAAACAAAAGAAGCATCTTGGAGAGAATCACAACTAAAAGGGTTGCGTCGTTTCCTAGTGGAAAAAGAGAATGATATATTCATGGCCCTCATGCAAGATTTAGGGAAACACCGTCTTGAAGCTTTTAGAGACGAGATAGGAACGTTAGTGAAGACCTTAAACCTCGCATTAAAGTGTCTGAAAGATTGGATGTCAAGCAAGAAGGCTCCACTACCTGCAATAGCATTGCTTTCAAGTGCAGAAATTGTTCATGAGCCTCTGGGTGTCGTTCTCATTATTTCATCTTGGAATTTGCCCTTTGGATTGTCTTTGGAGCCACTGATAGGAGCTATAGCTGCTGGAAACGCAGCAGTGTTAAAACCTTCAGAGCTGTCTCCTGCATGTTCCTCTCTACTTGCTGCTGGCATTGCCACTTACTTGGACAATAAAGCCATTAAAGTTATCCAAGGGGGACCACAGGAATCCGACCAATTATTACAGCAAAAATGGGACAAAATCTTCTTTACAGGTAGTGCACGAGTGGGGAGCATTGTGATGTCAGCAGCTGCGAAGCACCTGACCCCTGTAACACTGGAGTTGGGTGGAAAATGCCCTGCAGTTGTGGACTCACTTTCATCTTCTTGGGATTTAGAGGTGGCTGTGAAGCGAATTCTTGTGGGAAAATATGGAACTTGTGCTGGTCAAGCATGCATAGCAATTGACTATGTCATCGTCGAAAAGAGTTGCTGTTCAAAACTGGTGGAATTGATGAAGGTGTGGATCAAGAAAATGTTTGGAGACAACCCACAACATTCCAACACTATAGCAAGGATAGTTAATAAACAACACTTAACTAGATTAAAGAAACTTCTTGATGATCAAAATGTTCAAGAATCTGTTGTTTATGGTGGCTCAATTGACGAAGAAAACTTATTTATTGAGCCAACAATCTTGGTGGATCCCCCACTTGATGCAGCAATAATGTTAGATGAAGTTTTTGGCCCACTACTTCCAATTATTACTGTGGAGAAGATTGAGGACAGTATTGAATTCATAAGCTCTAGGCCTAAACCTCTTGCTCTTTATGTTTTCACCAAAAACCAAACATTGCAGAACAGAATGATATCTGAAACATCATCTGGCAGTGTTACTTTCAATGATGCAATTCTACAATATGCAGCAGATAGTCTACCATTTGGTGGAGTAGGTGGAAGTGGATTTGGCATGTACCATGGGAAATTCTCCTTTGACACATTCAGTCACCAAAAAGCAATTGTTAGAAGAAGTTTCTTAACTGATTTTTGGTATAGATATCCACCATGGACTGCAAATAAGTTTCAACTACTTGAGGTCTCTTATAATTATGATTATTTGGGATTGGTCCTTGTTATTCTTGGATTAAAGAGACCATCAAAACGCCAGATCTTGCCTTGTTAG

Protein sequence

>Msa0548720

MGTLEMDHLKNMREYFRSGKTKEASWRESQLKGLRRFLVEKENDIFMALMQDLGKHRLEAFRDEIGTLVKTLNLALKCLKDWMSSKKAPLPAIALLSSAEIVHEPLGVVLIISSWNLPFGLSLEPLIGAIAAGNAAVLKPSELSPACSSLLAAGIATYLDNKAIKVIQGGPQESDQLLQQKWDKIFFTGSARVGSIVMSAAAKHLTPVTLELGGKCPAVVDSLSSSWDLEVAVKRILVGKYGTCAGQACIAIDYVIVEKSCCSKLVELMKVWIKKMFGDNPQHSNTIARIVNKQHLTRLKKLLDDQNVQESVVYGGSIDEENLFIEPTILVDPPLDAAIMLDEVFGPLLPIITVEKIEDSIEFISSRPKPLALYVFTKNQTLQNRMISETSSGSVTFNDAILQYAADSLPFGGVGGSGFGMYHGKFSFDTFSHQKAIVRRSFLTDFWYRYPPWTANKFQLLEVSYNYDYLGLVLVILGLKRPSKRQILPC*