AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1435050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1435050 MtrunA17_Chr3g0136561 100.000 82 0 0 72 153 442 523 6.71e-50 171
Msa1435050 MtrunA17_Chr7g0250651 47.107 121 61 2 36 154 17 136 7.51e-35 120
Msa1435050 MtrunA17_Chr4g0063011 46.281 121 62 2 36 154 6 125 1.60e-33 123
Msa1435050 MtrunA17_Chr2g0282281 47.059 153 70 3 3 153 2 145 4.85e-33 121
Msa1435050 MtrunA17_Chr4g0035081 45.968 124 64 2 32 153 11 133 1.93e-32 120
Msa1435050 MtrunA17_Chr1g0188051 45.238 126 66 2 31 154 13 137 1.53e-30 115
Msa1435050 MtrunA17_Chr1g0166191 48.780 123 60 2 35 155 23 144 1.57e-30 115
Msa1435050 MtrunA17_Chr7g0276251 38.971 136 66 3 32 155 27 157 3.12e-24 97.4
Msa1435050 MtrunA17_Chr1g0209881 40.541 111 63 2 38 146 5 114 3.45e-18 80.1
Msa1435050 MtrunA17_Chr5g0423521 35.135 111 69 2 38 146 5 114 1.10e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1435050 AT2G26250.1 71.795 156 38 2 3 155 4 156 8.23e-75 233
Msa1435050 AT2G26640.1 47.107 121 61 2 36 154 15 134 2.44e-34 125
Msa1435050 AT1G19440.1 46.774 124 63 2 32 153 23 145 3.32e-33 122
Msa1435050 AT2G16280.1 41.045 134 74 3 24 153 9 141 6.21e-28 108
Msa1435050 AT1G04220.1 42.623 122 69 1 34 154 18 139 4.30e-25 100
Msa1435050 AT1G01120.1 36.641 131 75 3 32 155 28 157 3.81e-23 94.7
Msa1435050 AT1G68530.2 40.541 111 63 2 38 146 6 115 1.62e-21 89.4
Msa1435050 AT1G68530.1 40.541 111 63 2 38 146 6 115 3.94e-21 89.0
Msa1435050 AT1G25450.1 36.937 111 67 2 38 146 1 110 2.15e-17 78.6
Msa1435050 AT5G43760.1 35.398 113 70 2 44 154 34 145 6.47e-14 68.6
Msa1435050 AT3G52160.1 30.405 148 68 4 10 153 5 121 3.62e-12 63.2
Msa1435050 AT4G34250.1 32.479 117 65 4 47 154 5 116 4.53e-12 63.2
Msa1435050 AT4G34510.1 38.095 105 43 4 48 143 14 105 9.66e-12 62.0

Find 116 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAAATGGTTGGATTTAAT+TGG 0.200611 tig0027613:-11301 Msa1435050:three_prime_UTR
TCTAACCGTCGTCGTGATTT+TGG 0.202012 tig0027613:-11205 Msa1435050:three_prime_UTR
AAGATCTTTGGAAGAAGATT+TGG 0.211187 tig0027613:-12822 Msa1435050:CDS
GAACCTTAAGTATGTGAAAT+TGG 0.225828 tig0027613:-12937 Msa1435050:CDS
TATGAAATTAAGACTTCTTT+AGG 0.228500 tig0027613:-9600 Msa1435050:three_prime_UTR
AGCAAAGACTTAATTGAAAT+TGG 0.237658 tig0027613:-10174 Msa1435050:three_prime_UTR
TAAAATAATAAGACCATGTT+TGG 0.253417 tig0027613:-9366 None:intergenic
TGGAATTATTTCTGTTGATT+TGG 0.266424 tig0027613:-11375 Msa1435050:three_prime_UTR
GCAAAATCAATGAGATAAAT+AGG 0.269081 tig0027613:+12709 None:intergenic
CCCATACGAAAGAAACAATT+TGG 0.272699 tig0027613:+11247 None:intergenic
TTGGTATGAACTTGCTTATA+TGG 0.275832 tig0027613:-9842 Msa1435050:three_prime_UTR
GTGCTGATGATCGCAGTTTC+AGG 0.276133 tig0027613:-11138 Msa1435050:intron
TCCAAATTGTTTCTTTCGTA+TGG 0.284758 tig0027613:-11248 Msa1435050:three_prime_UTR
ACTAAACACAACAAGTAAAT+TGG 0.299530 tig0027613:+12870 None:intergenic
GTCTTAGCAAAGAAGATCTT+TGG 0.301276 tig0027613:-12834 Msa1435050:CDS
GTGTCACAAAACCTTCTTCT+AGG 0.319740 tig0027613:-9723 Msa1435050:three_prime_UTR
GAGTTATAATCTTGGTGGTA+TGG 0.322514 tig0027613:-11408 Msa1435050:three_prime_UTR
ACAAGAACACCAACATCTTT+TGG 0.328288 tig0027613:+11512 None:intergenic
TTTCTTTCTCATTGATTACT+TGG 0.336088 tig0027613:-9436 Msa1435050:three_prime_UTR
ATGACATTACTATCCTCTTC+TGG 0.341669 tig0027613:+11678 None:intergenic
CACCATGGTTTATCAGATAA+TGG 0.345732 tig0027613:+12910 None:intergenic
CGTGTTTGGCAACTCGCTTT+TGG 0.347268 tig0027613:-9790 Msa1435050:three_prime_UTR
TCGTGTTCGGAGACGGTTAC+CGG 0.354061 tig0027613:-12976 Msa1435050:CDS
TCAAAAGCTAGTTTGTAGTT+AGG 0.354642 tig0027613:+9997 None:intergenic
AGATCTTTGGAAGAAGATTT+GGG 0.356395 tig0027613:-12821 Msa1435050:CDS
CACATTGTTCGCACACATAA+AGG 0.364228 tig0027613:-11160 Msa1435050:three_prime_UTR
AACCCAATTTCACATACTTA+AGG 0.365618 tig0027613:+12934 None:intergenic
CTTGATGCTATCACTGATCT+TGG 0.370851 tig0027613:+11629 None:intergenic
TTCTTTAGGATATGAAATAA+TGG 0.373520 tig0027613:-9586 Msa1435050:three_prime_UTR
TTAGTGTGGAGGAACTTCTT+TGG 0.382188 tig0027613:-10069 Msa1435050:three_prime_UTR
GAAAATAAGCTGTTCTGAAA+AGG 0.385068 tig0027613:+10101 None:intergenic
GAGGCATCAATGGTTATGTT+TGG 0.389034 tig0027613:-11572 Msa1435050:three_prime_UTR
TGACGTTCTCCGTTCGTGTT+CGG 0.402498 tig0027613:-12989 Msa1435050:CDS
TTAAAAGAGGAGACCGTGTT+TGG 0.419933 tig0027613:-9804 Msa1435050:three_prime_UTR
TTTGTTGCATGAAGGTATCT+AGG 0.420458 tig0027613:-11759 Msa1435050:intron
AGTTTGTAGTTAGGAATGTA+TGG 0.424543 tig0027613:+10006 None:intergenic
ATTTCTGATCGTCTTCCTCT+TGG 0.433317 tig0027613:+10214 None:intergenic
TACTAGAAGTGTTGCCGAAT+CGG 0.436153 tig0027613:+9872 None:intergenic
ATAGTAATGTCATCAGGAAT+AGG 0.445521 tig0027613:-11668 Msa1435050:three_prime_UTR
ATAGAGCTAGCAAGAAAATC+AGG 0.445908 tig0027613:-11727 Msa1435050:CDS
CTTATAATGATTTATAATCA+TGG 0.446526 tig0027613:+11448 None:intergenic
ACACTTCTAGTAGCAGCATT+TGG 0.446881 tig0027613:-9861 Msa1435050:three_prime_UTR
AACCTTCTTCTAGGAACCCT+TGG 0.447884 tig0027613:-9714 Msa1435050:three_prime_UTR
CCAAATTGTTTCTTTCGTAT+GGG 0.454636 tig0027613:-11247 Msa1435050:three_prime_UTR
AAAATAAGCTGTTCTGAAAA+GGG 0.455046 tig0027613:+10102 None:intergenic
AGTTATAATCTTGGTGGTAT+GGG 0.456663 tig0027613:-11407 Msa1435050:three_prime_UTR
AGAATGACGCTGCACCGATT+CGG 0.461090 tig0027613:-9886 Msa1435050:three_prime_UTR
TTAAGTGTAACAGTGCTGTT+TGG 0.462133 tig0027613:-9759 Msa1435050:three_prime_UTR
GAATCATCGGGTCCGAATGC+CGG 0.462409 tig0027613:-13017 Msa1435050:CDS
TAAAGAGACATAGAAACGTT+AGG 0.464410 tig0027613:+9387 None:intergenic
TTCACAGATTGAAGAAAATC+CGG 0.470100 tig0027613:+12957 None:intergenic
AACCTTAAGTATGTGAAATT+GGG 0.472847 tig0027613:-12936 Msa1435050:CDS
GGTGGTATGGGTTGTAGTGC+TGG 0.477344 tig0027613:-11395 Msa1435050:three_prime_UTR
GCTTGTTAATTGAGAGAAGC+AGG 0.477899 tig0027613:+9670 None:intergenic
AACGTCAATGAACCGGCATT+CGG 0.478252 tig0027613:+13005 None:intergenic
AACGGAGAACGTCAATGAAC+CGG 0.480789 tig0027613:+12998 None:intergenic
TTATTTCTGTTGATTTGGCT+AGG 0.487535 tig0027613:-11370 Msa1435050:three_prime_UTR
AGCCAAGGGTTCCTAGAAGA+AGG 0.494068 tig0027613:+9712 None:intergenic
TATAAATCATTATAAGATGA+GGG 0.494261 tig0027613:-11441 Msa1435050:three_prime_UTR
TGTTGTTGTGAGTACTGAAA+TGG 0.505211 tig0027613:-11315 Msa1435050:three_prime_UTR
GAATCGTGGGATTGAATCAT+CGG 0.506549 tig0027613:-13030 Msa1435050:CDS
AAGAGGATAGTAATGTCATC+AGG 0.507961 tig0027613:-11674 Msa1435050:three_prime_UTR
GATATACTTCAATCTAATCC+TGG 0.513349 tig0027613:-11347 Msa1435050:three_prime_UTR
AGGTAGAGCTGAGGCATCAA+TGG 0.514255 tig0027613:-11582 Msa1435050:three_prime_UTR
AAAGACTTAATTGAAATTGG+TGG 0.514408 tig0027613:-10171 Msa1435050:three_prime_UTR
GTCACCTTCGTTAGTAGCCA+TGG 0.517565 tig0027613:+13073 None:intergenic
TTGGATTTAATTGGTATGCA+AGG 0.518833 tig0027613:-11292 Msa1435050:three_prime_UTR
GTGTGGAGGAACTTCTTTGG+TGG 0.523308 tig0027613:-10066 Msa1435050:three_prime_UTR
TATTTCTGTTGATTTGGCTA+GGG 0.527215 tig0027613:-11369 Msa1435050:three_prime_UTR
ACTTGCTTATATGGAAGCTA+AGG 0.533019 tig0027613:-9833 Msa1435050:three_prime_UTR
TTGTTGCATGAAGGTATCTA+GGG 0.535906 tig0027613:-11758 Msa1435050:intron
TGGAGGAACTTCTTTGGTGG+TGG 0.537831 tig0027613:-10063 Msa1435050:three_prime_UTR
CATACCTTGAGTTCATCATC+AGG 0.540416 tig0027613:+12676 None:intergenic
ATGTATGGCTTGTTTGATGA+TGG 0.542182 tig0027613:+10021 None:intergenic
GGAAGACGATCAGAAATTCA+AGG 0.543870 tig0027613:-10208 Msa1435050:three_prime_UTR
ACTTGTTGTGTTTAGTGCTG+AGG 0.544147 tig0027613:-12863 Msa1435050:intron
TGGCTGACAATGATGGTGTT+GGG 0.544777 tig0027613:+11468 None:intergenic
TCTCCGTTCGTGTTCGGAGA+CGG 0.549060 tig0027613:-12983 Msa1435050:CDS
CAGCAGAGATTGTGAATCGT+GGG 0.549304 tig0027613:-13043 Msa1435050:CDS
CATCACAACACTAGGACCAT+TGG 0.552303 tig0027613:-10130 Msa1435050:three_prime_UTR
AATCGTGGGATTGAATCATC+GGG 0.554451 tig0027613:-13029 Msa1435050:CDS
GCATCAATGCAGTCAAGCCA+AGG 0.562088 tig0027613:+9697 None:intergenic
CAGTATAAATATCACAAGCC+AGG 0.564432 tig0027613:+9528 None:intergenic
AACACAGCAACAATGAAAGA+AGG 0.567448 tig0027613:-11602 Msa1435050:three_prime_UTR
TCTGAAAAGGGTAGGACCAA+TGG 0.573247 tig0027613:+10114 None:intergenic
ATGGCTGACAATGATGGTGT+TGG 0.573943 tig0027613:+11467 None:intergenic
GGAATTAGACCAAAAGATGT+TGG 0.576011 tig0027613:-11521 Msa1435050:three_prime_UTR
TGAATTGAGTGACAAGAACA+TGG 0.579983 tig0027613:-9917 Msa1435050:three_prime_UTR
TCAACCTGATGATGAACTCA+AGG 0.580290 tig0027613:-12680 Msa1435050:intron
TCACTCTTTACTTCATGTCA+AGG 0.583752 tig0027613:-12738 Msa1435050:CDS
AAAACAAACATCACAACACT+AGG 0.592072 tig0027613:-10138 Msa1435050:three_prime_UTR
TCGGTGCAGCGTCATTCTAG+AGG 0.593076 tig0027613:+9891 None:intergenic
GAAGACGATCAGAAATTCAA+GGG 0.595322 tig0027613:-10207 Msa1435050:three_prime_UTR
TTATAAATCATTATAAGATG+AGG 0.596281 tig0027613:-11442 Msa1435050:three_prime_UTR
ATAATCATGGCTGACAATGA+TGG 0.597899 tig0027613:+11461 None:intergenic
TAAGCTGTTCTGAAAAGGGT+AGG 0.602571 tig0027613:+10106 None:intergenic
TCAGCAGAGATTGTGAATCG+TGG 0.609130 tig0027613:-13044 Msa1435050:CDS
GAAGTCTAGAATTCCAGAAG+AGG 0.610645 tig0027613:-11691 Msa1435050:exon
GTTGTGTTTAGTGCTGAGGT+TGG 0.612024 tig0027613:-12859 Msa1435050:intron
TCTTTGCTACATTAGTGTGG+AGG 0.612338 tig0027613:-10080 Msa1435050:three_prime_UTR
CATCAATGCAGTCAAGCCAA+GGG 0.623256 tig0027613:+9698 None:intergenic
TAACCGTCTCCGAACACGAA+CGG 0.625239 tig0027613:+12980 None:intergenic
ATAAATCATTATAAGATGAG+GGG 0.630696 tig0027613:-11440 Msa1435050:three_prime_UTR
TACCATTATCTGATAAACCA+TGG 0.630726 tig0027613:-12912 Msa1435050:CDS
CAAAAGCGAGTTGCCAAACA+CGG 0.635869 tig0027613:+9791 None:intergenic
ACAACAACAGCATAGTTACC+AGG 0.639038 tig0027613:+11329 None:intergenic
GTTGTGAGTACTGAAATGGT+TGG 0.646870 tig0027613:-11311 Msa1435050:three_prime_UTR
TCAATGAGATAAATAGGACG+TGG 0.648831 tig0027613:+12715 None:intergenic
AAAGAGTACTGAGAAAACAA+AGG 0.671840 tig0027613:+9476 None:intergenic
TAGTGAACAAATAAACACCA+TGG 0.683960 tig0027613:+12895 None:intergenic
AATGAAAGAAGGTAGAGCTG+AGG 0.691885 tig0027613:-11591 Msa1435050:three_prime_UTR
ATGCAGGTGTGTGTACCAAG+AGG 0.695574 tig0027613:-10229 Msa1435050:intron
CCAACCATGGCTACTAACGA+AGG 0.698694 tig0027613:-13077 None:intergenic
CGCGGCCAAAATCACGACGA+CGG 0.700992 tig0027613:+11200 None:intergenic
GTTCAAGACGATATTTCGCG+CGG 0.704956 tig0027613:+11182 None:intergenic
ATATTTATACTGTTACACTG+AGG 0.770523 tig0027613:-9517 Msa1435050:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAATAAAAATTAT+GGG + tig0027613:10603-10622 None:intergenic 0.0%
!! AAAAATAAAAATAAAAATTA+TGG + tig0027613:10604-10623 None:intergenic 0.0%
!! ATAAAAAAAAAAACTCAAAA+CGG - tig0027613:9880-9899 Msa1435050:three_prime_UTR 10.0%
!! ATCATTGATATATAATATAA+AGG + tig0027613:10419-10438 None:intergenic 10.0%
!!! TTTTTTTTTTTATTACCACT+CGG + tig0027613:9873-9892 None:intergenic 15.0%
!!! TGTATTAATTTTTTTGGAAA+GGG - tig0027613:10085-10104 Msa1435050:three_prime_UTR 15.0%
!! TAAGTGATATAAAATATTGT+AGG - tig0027613:10121-10140 Msa1435050:three_prime_UTR 15.0%
!!! ATTATTTTTTACTGTTTTGA+AGG + tig0027613:10396-10415 None:intergenic 15.0%
!!! AGAGATTTCTTTTTTAAAAA+AGG + tig0027613:10541-10560 None:intergenic 15.0%
!! CTTATAATGATTTATAATCA+TGG + tig0027613:10993-11012 None:intergenic 15.0%
!! TTATAAATCATTATAAGATG+AGG - tig0027613:10996-11015 Msa1435050:intron 15.0%
!! TATAAATCATTATAAGATGA+GGG - tig0027613:10997-11016 Msa1435050:intron 15.0%
!!! AATATTTTGAGTTATAATCT+TGG - tig0027613:11022-11041 Msa1435050:intron 15.0%
!! ATTATTATAGATAGATAGAT+TGG - tig0027613:11661-11680 Msa1435050:three_prime_UTR 15.0%
!! ATAATCAAAATAACTACTAA+TGG - tig0027613:11821-11840 Msa1435050:intron 15.0%
!! AAAAAAAAAGAGATTAAAAG+AGG - tig0027613:11900-11919 Msa1435050:intron 15.0%
!! TAAATTAATTAACCAACATG+TGG - tig0027613:9842-9861 Msa1435050:three_prime_UTR 20.0%
!!! TAGATTTGTTGCTAAAATAT+CGG + tig0027613:10042-10061 None:intergenic 20.0%
!!! GTGTATTAATTTTTTTGGAA+AGG - tig0027613:10084-10103 Msa1435050:three_prime_UTR 20.0%
!! TTAAAACTAACATAGAGAAA+TGG + tig0027613:10347-10366 None:intergenic 20.0%
!!! GTTAGTTTTAATTGTAATTG+TGG - tig0027613:10356-10375 Msa1435050:intron 20.0%
!! TAAAAATGTATCTTTCATGA+TGG - tig0027613:10499-10518 Msa1435050:intron 20.0%
!! ATAAATCATTATAAGATGAG+GGG - tig0027613:10998-11017 Msa1435050:intron 20.0%
!! TCAAATTAGTAAGATATGAT+TGG + tig0027613:11338-11357 None:intergenic 20.0%
!! GATCAAACATATCATAATTT+CGG - tig0027613:11460-11479 Msa1435050:three_prime_UTR 20.0%
!! ATATCATAATTTCGGTTTAA+TGG - tig0027613:11468-11487 Msa1435050:three_prime_UTR 20.0%
!!! TTTTTTTTTTTTAAGGGATG+AGG - tig0027613:11626-11645 Msa1435050:three_prime_UTR 20.0%
!! AGAATAGTAATCAAAATATG+GGG + tig0027613:11733-11752 None:intergenic 20.0%
!! CAGAATAGTAATCAAAATAT+GGG + tig0027613:11734-11753 None:intergenic 20.0%
!! ACAGAATAGTAATCAAAATA+TGG + tig0027613:11735-11754 None:intergenic 20.0%
!! TATGAAATTAAGACTTCTTT+AGG - tig0027613:12838-12857 Msa1435050:CDS 20.0%
!!! TTCTTTAGGATATGAAATAA+TGG - tig0027613:12852-12871 Msa1435050:intron 20.0%
!!! GTGTTTTAAATTTTAATTCC+TGG - tig0027613:12892-12911 Msa1435050:CDS 20.0%
! AACCTTAAGTATGTGAAATT+GGG - tig0027613:9502-9521 Msa1435050:three_prime_UTR 25.0%
! ACTAAACACAACAAGTAAAT+TGG + tig0027613:9571-9590 None:intergenic 25.0%
! GCAAAATCAATGAGATAAAT+AGG + tig0027613:9732-9751 None:intergenic 25.0%
!!! GCTAGGTGTATTAATTTTTT+TGG - tig0027613:10079-10098 Msa1435050:three_prime_UTR 25.0%
!!! AGCTTTAGAGTTTTTTATCT+AGG - tig0027613:10172-10191 Msa1435050:three_prime_UTR 25.0%
!!! ATTTTGAGTTATAATCTTGG+TGG - tig0027613:11025-11044 Msa1435050:intron 25.0%
!!! TGGAATTATTTCTGTTGATT+TGG - tig0027613:11063-11082 Msa1435050:intron 25.0%
!!! TGAGACTGTTTTTATTCTTT+TGG + tig0027613:11766-11785 None:intergenic 25.0%
!!! ATGTGGTTACCAATATTTTT+TGG - tig0027613:12103-12122 Msa1435050:intron 25.0%
! AAGGTTAAGCCAAAAAATAT+TGG + tig0027613:12115-12134 None:intergenic 25.0%
! TCGAACTTCATATTATCAAA+AGG + tig0027613:12134-12153 None:intergenic 25.0%
! AGCAAAGACTTAATTGAAAT+TGG - tig0027613:12264-12283 Msa1435050:intron 25.0%
! AAAGACTTAATTGAAATTGG+TGG - tig0027613:12267-12286 Msa1435050:intron 25.0%
!!! AAAATAAGCTGTTCTGAAAA+GGG + tig0027613:12339-12358 None:intergenic 25.0%
!!! AATGGTAGTTTTAGTTAAGT+TGG - tig0027613:12870-12889 Msa1435050:intron 25.0%
! ATATTTATACTGTTACACTG+AGG - tig0027613:12921-12940 Msa1435050:CDS 25.0%
!! TTTCTTTCTCATTGATTACT+TGG - tig0027613:13002-13021 Msa1435050:CDS 25.0%
TTCACAGATTGAAGAAAATC+CGG + tig0027613:9484-9503 None:intergenic 30.0%
GAACCTTAAGTATGTGAAAT+TGG - tig0027613:9501-9520 Msa1435050:three_prime_UTR 30.0%
AACCCAATTTCACATACTTA+AGG + tig0027613:9507-9526 None:intergenic 30.0%
TACCATTATCTGATAAACCA+TGG - tig0027613:9526-9545 Msa1435050:three_prime_UTR 30.0%
TAGTGAACAAATAAACACCA+TGG + tig0027613:9546-9565 None:intergenic 30.0%
! AAGATCTTTGGAAGAAGATT+TGG - tig0027613:9616-9635 Msa1435050:three_prime_UTR 30.0%
! AGATCTTTGGAAGAAGATTT+GGG - tig0027613:9617-9636 Msa1435050:three_prime_UTR 30.0%
ATAAATCTAAGTGTAGTGCT+AGG - tig0027613:10062-10081 Msa1435050:three_prime_UTR 30.0%
ATGTCTAGAAAAACTTGTGT+TGG - tig0027613:10633-10652 Msa1435050:intron 30.0%
!! ACAATGAATTTGTTGCATGA+AGG - tig0027613:10671-10690 Msa1435050:intron 30.0%
ATAGTAATGTCATCAGGAAT+AGG - tig0027613:10770-10789 Msa1435050:intron 30.0%
! GATGAACTCTTTGAAAAAAC+AGG - tig0027613:10896-10915 Msa1435050:intron 30.0%
! AGTTATAATCTTGGTGGTAT+GGG - tig0027613:11031-11050 Msa1435050:intron 30.0%
!! TTATTTCTGTTGATTTGGCT+AGG - tig0027613:11068-11087 Msa1435050:intron 30.0%
!! TATTTCTGTTGATTTGGCTA+GGG - tig0027613:11069-11088 Msa1435050:intron 30.0%
GATATACTTCAATCTAATCC+TGG - tig0027613:11091-11110 Msa1435050:intron 30.0%
CTGAAATGGTTGGATTTAAT+TGG - tig0027613:11137-11156 Msa1435050:intron 30.0%
TTGGATTTAATTGGTATGCA+AGG - tig0027613:11146-11165 Msa1435050:three_prime_UTR 30.0%
! TCCAAATTGTTTCTTTCGTA+TGG - tig0027613:11190-11209 Msa1435050:three_prime_UTR 30.0%
! CCAAATTGTTTCTTTCGTAT+GGG - tig0027613:11191-11210 Msa1435050:three_prime_UTR 30.0%
! TTTATGGTTTCCCTTTTATG+AGG - tig0027613:11588-11607 Msa1435050:three_prime_UTR 30.0%
! TTATGGTTTCCCTTTTATGA+GGG - tig0027613:11589-11608 Msa1435050:three_prime_UTR 30.0%
ACACAAAATTTAGTCCATGA+TGG + tig0027613:11688-11707 None:intergenic 30.0%
! TTTGTTGGTGTTTATTCACA+AGG + tig0027613:12067-12086 None:intergenic 30.0%
TGTGAATAAACACCAACAAA+AGG - tig0027613:12067-12086 Msa1435050:intron 30.0%
AAAACAAACATCACAACACT+AGG - tig0027613:12300-12319 Msa1435050:intron 30.0%
!! GAAAATAAGCTGTTCTGAAA+AGG + tig0027613:12340-12359 None:intergenic 30.0%
! TTTTCTTTGCTACATTAGTG+TGG - tig0027613:12355-12374 Msa1435050:intron 30.0%
AGTTTGTAGTTAGGAATGTA+TGG + tig0027613:12435-12454 None:intergenic 30.0%
! TCAAAAGCTAGTTTGTAGTT+AGG + tig0027613:12444-12463 None:intergenic 30.0%
! TTGGTATGAACTTGCTTATA+TGG - tig0027613:12596-12615 Msa1435050:intron 30.0%
GCTAAGGAAAAAGTTAAAAG+AGG - tig0027613:12621-12640 Msa1435050:intron 30.0%
!! AAAGAGTACTGAGAAAACAA+AGG + tig0027613:12965-12984 None:intergenic 30.0%
TAAAGAGACATAGAAACGTT+AGG + tig0027613:13054-13073 None:intergenic 30.0%
CACCATGGTTTATCAGATAA+TGG + tig0027613:9531-9550 None:intergenic 35.0%
GTCTTAGCAAAGAAGATCTT+TGG - tig0027613:9604-9623 Msa1435050:three_prime_UTR 35.0%
TCACTCTTTACTTCATGTCA+AGG - tig0027613:9700-9719 Msa1435050:three_prime_UTR 35.0%
TCAATGAGATAAATAGGACG+TGG + tig0027613:9726-9745 None:intergenic 35.0%
ACAGAATACTAATCCTTCCT+TGG + tig0027613:10207-10226 None:intergenic 35.0%
TGACATCAGATCACAACTTT+AGG - tig0027613:10272-10291 Msa1435050:intron 35.0%
GACATCAGATCACAACTTTA+GGG - tig0027613:10273-10292 Msa1435050:intron 35.0%
TCTAGAAAAACTTGTGTTGG+TGG - tig0027613:10636-10655 Msa1435050:intron 35.0%
!! TTTGTTGCATGAAGGTATCT+AGG - tig0027613:10679-10698 Msa1435050:intron 35.0%
!! TTGTTGCATGAAGGTATCTA+GGG - tig0027613:10680-10699 Msa1435050:intron 35.0%
ATAGAGCTAGCAAGAAAATC+AGG - tig0027613:10711-10730 Msa1435050:intron 35.0%
ATGACATTACTATCCTCTTC+TGG + tig0027613:10763-10782 None:intergenic 35.0%
AAGAGGATAGTAATGTCATC+AGG - tig0027613:10764-10783 Msa1435050:intron 35.0%
AACACAGCAACAATGAAAGA+AGG - tig0027613:10836-10855 Msa1435050:intron 35.0%
GGAATTAGACCAAAAGATGT+TGG - tig0027613:10917-10936 Msa1435050:intron 35.0%
! ACAAGAACACCAACATCTTT+TGG + tig0027613:10929-10948 None:intergenic 35.0%
ATAATCATGGCTGACAATGA+TGG + tig0027613:10980-10999 None:intergenic 35.0%
! GAGTTATAATCTTGGTGGTA+TGG - tig0027613:11030-11049 Msa1435050:intron 35.0%
!! TGTTGTTGTGAGTACTGAAA+TGG - tig0027613:11123-11142 Msa1435050:intron 35.0%
CCCATACGAAAGAAACAATT+TGG + tig0027613:11194-11213 None:intergenic 35.0%
GTTTGATCTCTATTCGTCAA+CGG + tig0027613:11448-11467 None:intergenic 35.0%
CTATACATGCCCTCATAAAA+GGG + tig0027613:11601-11620 None:intergenic 35.0%
ACTATACATGCCCTCATAAA+AGG + tig0027613:11602-11621 None:intergenic 35.0%
! ATAGATAGATTGGTCCATCA+TGG - tig0027613:11671-11690 Msa1435050:three_prime_UTR 35.0%
TCTCAATCAATCATCCCTAA+TGG - tig0027613:11781-11800 Msa1435050:intron 35.0%
!! TCCATCTCACTTTTCCATTA+GGG + tig0027613:11798-11817 None:intergenic 35.0%
!! TTCCATCTCACTTTTCCATT+AGG + tig0027613:11799-11818 None:intergenic 35.0%
ACCCTAACTTTCATTTCATG+TGG - tig0027613:12040-12059 Msa1435050:intron 35.0%
CCCACATGAAATGAAAGTTA+GGG + tig0027613:12044-12063 None:intergenic 35.0%
CCCTAACTTTCATTTCATGT+GGG - tig0027613:12041-12060 Msa1435050:intron 35.0%
!! ACCAACAAAAGGTATGCTTT+TGG - tig0027613:12078-12097 Msa1435050:intron 35.0%
!! TCCAAAAGCATACCTTTTGT+TGG + tig0027613:12082-12101 None:intergenic 35.0%
! AAGGTATGCTTTTGGATATG+TGG - tig0027613:12086-12105 Msa1435050:intron 35.0%
CTTAACTGTAACACAAATGC+AGG - tig0027613:12193-12212 Msa1435050:intron 35.0%
GAAGACGATCAGAAATTCAA+GGG - tig0027613:12231-12250 Msa1435050:intron 35.0%
!! ATGTATGGCTTGTTTGATGA+TGG + tig0027613:12420-12439 None:intergenic 35.0%
!!! CTTTTGAAGCTCATCAAGAA+TGG + tig0027613:12496-12515 None:intergenic 35.0%
TGAATTGAGTGACAAGAACA+TGG - tig0027613:12521-12540 Msa1435050:intron 35.0%
ACTTGCTTATATGGAAGCTA+AGG - tig0027613:12605-12624 Msa1435050:intron 35.0%
! TTAAGTGTAACAGTGCTGTT+TGG - tig0027613:12679-12698 Msa1435050:intron 35.0%
CAGTATAAATATCACAAGCC+AGG + tig0027613:12913-12932 None:intergenic 35.0%
GAATCGTGGGATTGAATCAT+CGG - tig0027613:9408-9427 Msa1435050:three_prime_UTR 40.0%
AATCGTGGGATTGAATCATC+GGG - tig0027613:9409-9428 Msa1435050:three_prime_UTR 40.0%
!! ACTTGTTGTGTTTAGTGCTG+AGG - tig0027613:9575-9594 Msa1435050:three_prime_UTR 40.0%
! TCAACCTGATGATGAACTCA+AGG - tig0027613:9758-9777 Msa1435050:three_prime_UTR 40.0%
CATACCTTGAGTTCATCATC+AGG + tig0027613:9765-9784 None:intergenic 40.0%
! TATCTAGGACTAAAACGCCA+AGG - tig0027613:10187-10206 Msa1435050:three_prime_UTR 40.0%
! GAAGTCTAGAATTCCAGAAG+AGG - tig0027613:10747-10766 Msa1435050:intron 40.0%
CTTGATGCTATCACTGATCT+TGG + tig0027613:10812-10831 None:intergenic 40.0%
AATGAAAGAAGGTAGAGCTG+AGG - tig0027613:10847-10866 Msa1435050:intron 40.0%
! GAGGCATCAATGGTTATGTT+TGG - tig0027613:10866-10885 Msa1435050:intron 40.0%
ACAACAACAGCATAGTTACC+AGG + tig0027613:11112-11131 None:intergenic 40.0%
!! GTTGTGAGTACTGAAATGGT+TGG - tig0027613:11127-11146 Msa1435050:intron 40.0%
CACATTGTTCGCACACATAA+AGG - tig0027613:11278-11297 Msa1435050:three_prime_UTR 40.0%
TGGGGAAATGAAACATAGCA+TGG + tig0027613:11715-11734 None:intergenic 40.0%
TCCCTAATGGAAAAGTGAGA+TGG - tig0027613:11794-11813 Msa1435050:intron 40.0%
GCCCACATGAAATGAAAGTT+AGG + tig0027613:12045-12064 None:intergenic 40.0%
ATTTCTGATCGTCTTCCTCT+TGG + tig0027613:12227-12246 None:intergenic 40.0%
GGAAGACGATCAGAAATTCA+AGG - tig0027613:12230-12249 Msa1435050:intron 40.0%
!! TAAGCTGTTCTGAAAAGGGT+AGG + tig0027613:12335-12354 None:intergenic 40.0%
TCTTTGCTACATTAGTGTGG+AGG - tig0027613:12358-12377 Msa1435050:intron 40.0%
TTAGTGTGGAGGAACTTCTT+TGG - tig0027613:12369-12388 Msa1435050:intron 40.0%
!! TACTAGAAGTGTTGCCGAAT+CGG + tig0027613:12569-12588 None:intergenic 40.0%
ACACTTCTAGTAGCAGCATT+TGG - tig0027613:12577-12596 Msa1435050:intron 40.0%
TTAAAAGAGGAGACCGTGTT+TGG - tig0027613:12634-12653 Msa1435050:intron 40.0%
GTGTCACAAAACCTTCTTCT+AGG - tig0027613:12715-12734 Msa1435050:CDS 40.0%
! GCTTGTTAATTGAGAGAAGC+AGG + tig0027613:12771-12790 None:intergenic 40.0%
TCAGCAGAGATTGTGAATCG+TGG - tig0027613:9394-9413 Msa1435050:three_prime_UTR 45.0%
CAGCAGAGATTGTGAATCGT+GGG - tig0027613:9395-9414 Msa1435050:three_prime_UTR 45.0%
AACGTCAATGAACCGGCATT+CGG + tig0027613:9436-9455 None:intergenic 45.0%
AACGGAGAACGTCAATGAAC+CGG + tig0027613:9443-9462 None:intergenic 45.0%
! GTTGTGTTTAGTGCTGAGGT+TGG - tig0027613:9579-9598 Msa1435050:three_prime_UTR 45.0%
! GTCTGATTAGCTAGTTGGTG+AGG - tig0027613:9962-9981 Msa1435050:three_prime_UTR 45.0%
GGTGAGGTAATAGCTTACCA+AGG - tig0027613:9978-9997 Msa1435050:three_prime_UTR 45.0%
GAGGTAATAGCTTACCAAGG+CGG - tig0027613:9981-10000 Msa1435050:three_prime_UTR 45.0%
GGTATCAAACCCGAAACTTC+CGG + tig0027613:10021-10040 None:intergenic 45.0%
TAGGACTAAAACGCCAAGGA+AGG - tig0027613:10191-10210 Msa1435050:three_prime_UTR 45.0%
! TGGCTGACAATGATGGTGTT+GGG + tig0027613:10973-10992 None:intergenic 45.0%
! ATGGCTGACAATGATGGTGT+TGG + tig0027613:10974-10993 None:intergenic 45.0%
! TCTAACCGTCGTCGTGATTT+TGG - tig0027613:11233-11252 Msa1435050:three_prime_UTR 45.0%
GTTCAAGACGATATTTCGCG+CGG + tig0027613:11259-11278 None:intergenic 45.0%
CATCACAACACTAGGACCAT+TGG - tig0027613:12308-12327 Msa1435050:intron 45.0%
TCTGAAAAGGGTAGGACCAA+TGG + tig0027613:12327-12346 None:intergenic 45.0%
CAAAAGCGAGTTGCCAAACA+CGG + tig0027613:12650-12669 None:intergenic 45.0%
! AACCTTCTTCTAGGAACCCT+TGG - tig0027613:12724-12743 Msa1435050:CDS 45.0%
CATCAATGCAGTCAAGCCAA+GGG + tig0027613:12743-12762 None:intergenic 45.0%
!! TATCAATAATAATAAATTTA+TGG - tig0027613:11572-11591 Msa1435050:three_prime_UTR 5.0%
!!! AGTTTTTTTTTTTTTTTTTA+AGG - tig0027613:11619-11638 Msa1435050:three_prime_UTR 5.0%
!!! GTTTTTTTTTTTTTTTTTAA+GGG - tig0027613:11620-11639 Msa1435050:three_prime_UTR 5.0%
!!! TTTATTTTTTTAAACTTTAA+AGG + tig0027613:12003-12022 None:intergenic 5.0%
TGACGTTCTCCGTTCGTGTT+CGG - tig0027613:9449-9468 Msa1435050:three_prime_UTR 50.0%
TAACCGTCTCCGAACACGAA+CGG + tig0027613:9461-9480 None:intergenic 50.0%
CACTCGGATCAACCACATGT+TGG + tig0027613:9857-9876 None:intergenic 50.0%
CAACATGTGGTTGATCCGAG+TGG - tig0027613:9855-9874 Msa1435050:three_prime_UTR 50.0%
TGCTAATACCCCGTAAGCTG+AGG - tig0027613:9904-9923 Msa1435050:three_prime_UTR 50.0%
TCCTTTCGCTCCTCAGCTTA+CGG + tig0027613:9917-9936 None:intergenic 50.0%
! CTCGCGTCTGATTAGCTAGT+TGG - tig0027613:9957-9976 Msa1435050:three_prime_UTR 50.0%
CAGTAGCTGTCCGGAAGTTT+CGG - tig0027613:10008-10027 Msa1435050:three_prime_UTR 50.0%
AGTAGCTGTCCGGAAGTTTC+GGG - tig0027613:10009-10028 Msa1435050:three_prime_UTR 50.0%
! AGGTAGAGCTGAGGCATCAA+TGG - tig0027613:10856-10875 Msa1435050:intron 50.0%
! GTGCTGATGATCGCAGTTTC+AGG - tig0027613:11300-11319 Msa1435050:three_prime_UTR 50.0%
ATGCAGGTGTGTGTACCAAG+AGG - tig0027613:12209-12228 Msa1435050:intron 50.0%
GTGTGGAGGAACTTCTTTGG+TGG - tig0027613:12372-12391 Msa1435050:intron 50.0%
TGGAGGAACTTCTTTGGTGG+TGG - tig0027613:12375-12394 Msa1435050:intron 50.0%
!! AGAATGACGCTGCACCGATT+CGG - tig0027613:12552-12571 Msa1435050:intron 50.0%
! CGTGTTTGGCAACTCGCTTT+TGG - tig0027613:12648-12667 Msa1435050:intron 50.0%
!!! TGGCAACTCGCTTTTGGTTC+TGG - tig0027613:12654-12673 Msa1435050:intron 50.0%
AGCCAAGGGTTCCTAGAAGA+AGG + tig0027613:12729-12748 None:intergenic 50.0%
GCATCAATGCAGTCAAGCCA+AGG + tig0027613:12744-12763 None:intergenic 50.0%
GAATCATCGGGTCCGAATGC+CGG - tig0027613:9421-9440 Msa1435050:three_prime_UTR 55.0%
TCTCCGTTCGTGTTCGGAGA+CGG - tig0027613:9455-9474 Msa1435050:three_prime_UTR 55.0%
TCGTGTTCGGAGACGGTTAC+CGG - tig0027613:9462-9481 Msa1435050:three_prime_UTR 55.0%
CTTTCGCTCCTCAGCTTACG+GGG + tig0027613:9915-9934 None:intergenic 55.0%
CCTTTCGCTCCTCAGCTTAC+GGG + tig0027613:9916-9935 None:intergenic 55.0%
GTAAGCTGAGGAGCGAAAGG+AGG - tig0027613:9916-9935 Msa1435050:three_prime_UTR 55.0%
ACAGCTACTGATCACCGCCT+TGG + tig0027613:9998-10017 None:intergenic 55.0%
! GGTGGTATGGGTTGTAGTGC+TGG - tig0027613:11043-11062 Msa1435050:intron 55.0%
TCGGTGCAGCGTCATTCTAG+AGG + tig0027613:12550-12569 None:intergenic 55.0%
CCCGTAAGCTGAGGAGCGAA+AGG - tig0027613:9913-9932 Msa1435050:three_prime_UTR 60.0%
CGAAAGGAGGAATCCGCCCA+AGG - tig0027613:9929-9948 Msa1435050:three_prime_UTR 60.0%
AAGGAGGAATCCGCCCAAGG+AGG - tig0027613:9932-9951 Msa1435050:three_prime_UTR 60.0%
AGGAGGAATCCGCCCAAGGA+GGG - tig0027613:9933-9952 Msa1435050:three_prime_UTR 60.0%
GGCGGTGATCAGTAGCTGTC+CGG - tig0027613:9999-10018 Msa1435050:three_prime_UTR 60.0%
CGCGGCCAAAATCACGACGA+CGG + tig0027613:11241-11260 None:intergenic 60.0%
GGAGGAATCCGCCCAAGGAG+GGG - tig0027613:9934-9953 Msa1435050:three_prime_UTR 65.0%
TCAGACGCGAGCCCCTCCTT+GGG + tig0027613:9948-9967 None:intergenic 65.0%
ATCAGACGCGAGCCCCTCCT+TGG + tig0027613:9949-9968 None:intergenic 65.0%
GACGCGAGCCCCTCCTTGGG+CGG + tig0027613:9945-9964 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0027613 gene 9367 13093 9367 ID=Msa1435050;Name=Msa1435050
tig0027613 mRNA 9367 13093 9367 ID=Msa1435050-mRNA-1;Parent=Msa1435050;Name=Msa1435050-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.66|0.5|1|0.33|0.5|4|1445|155
tig0027613 exon 9367 10245 9367 ID=Msa1435050-mRNA-1:exon:9499;Parent=Msa1435050-mRNA-1
tig0027613 exon 11139 11767 11139 ID=Msa1435050-mRNA-1:exon:9498;Parent=Msa1435050-mRNA-1
tig0027613 exon 12681 12870 12681 ID=Msa1435050-mRNA-1:exon:9497;Parent=Msa1435050-mRNA-1
tig0027613 exon 12879 13093 12879 ID=Msa1435050-mRNA-1:exon:9496;Parent=Msa1435050-mRNA-1
tig0027613 CDS 12879 13093 12879 ID=Msa1435050-mRNA-1:cds;Parent=Msa1435050-mRNA-1
tig0027613 CDS 12681 12870 12681 ID=Msa1435050-mRNA-1:cds;Parent=Msa1435050-mRNA-1
tig0027613 CDS 11705 11767 11705 ID=Msa1435050-mRNA-1:cds;Parent=Msa1435050-mRNA-1
tig0027613 three_prime_UTR 11139 11704 11139 ID=Msa1435050-mRNA-1:three_prime_utr;Parent=Msa1435050-mRNA-1
tig0027613 three_prime_UTR 9367 10245 9367 ID=Msa1435050-mRNA-1:three_prime_utr;Parent=Msa1435050-mRNA-1
Gene Sequence

>Msa1435050

ATGGCTACTAACGAAGGTGACATGTTCTCAGCAGAGATTGTGAATCGTGGGATTGAATCATCGGGTCCGAATGCCGGTTCATTGACGTTCTCCGTTCGTGTTCGGAGACGGTTACCGGATTTTCTTCAATCTGTGAACCTTAAGTATGTGAAATTGGGTTACCATTATCTGATAAACCATGGTGTTTATTTGTTCACTATACCAATTTACTTGTTTGCTGAGGTTGGTAGTCTTAGCAAAGAAGATCTTTGGAAGAAGATTTGGGAAGATGCAACTTATGATCTTGCATCTGTTCTCTCTTCTCTTGCTGTCTTTGTTTTCACTTTCACTCTTTACTTCATGTCAAGGCCACGTCCTATTTATCTCATTGATTTTGCATGCTATCAACCTGATGATGAACTCAAGGTATCTAGGGAGCAATTGATAGAGCTAGCAAGAAAATCAGGAAAATTTGATGAAGAAGTCTAG

Protein sequence

>Msa1435050

MATNEGDMFSAEIVNRGIESSGPNAGSLTFSVRVRRRLPDFLQSVNLKYVKLGYHYLINHGVYLFTIPIYLFAEVGSLSKEDLWKKIWEDATYDLASVLSSLAVFVFTFTLYFMSRPRPIYLIDFACYQPDDELKVSREQLIELARKSGKFDEEV*