AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1232860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1232860 MtrunA17_Chr8g0342061 92.833 586 8 1 1 552 1 586 0.0 1107
Msa1232860 MtrunA17_Chr2g0330251 73.277 595 115 5 1 552 1 594 0.0 884
Msa1232860 MtrunA17_Chr5g0398121 52.205 567 216 8 23 546 20 574 0.0 555
Msa1232860 MtrunA17_Chr1g0203971 49.540 543 225 8 32 536 2 533 4.15e-172 497
Msa1232860 MtrunA17_Chr5g0398141 54.034 409 181 3 143 547 35 440 5.45e-153 445
Msa1232860 MtrunA17_Chr5g0417511 37.351 589 247 12 7 545 15 531 3.70e-110 339
Msa1232860 MtrunA17_Chr4g0000501 41.368 307 139 5 246 548 7 276 1.87e-64 212
Msa1232860 MtrunA17_Chr5g0398131 69.792 96 29 0 55 150 13 108 7.71e-40 140
Msa1232860 MtrunA17_Chr4g0000491 46.552 174 51 2 55 186 54 227 1.88e-37 139
Msa1232860 MtrunA17_Chr1g0203951 58.197 122 39 3 31 152 7 116 6.81e-37 134
Msa1232860 MtrunA17_Chr1g0203961 39.216 204 99 3 263 441 3 206 2.53e-33 126
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1232860 AT1G72970.1 65.536 560 154 4 31 552 36 594 0.0 713
Msa1232860 AT1G72970.2 62.857 560 142 5 31 552 36 567 0.0 669
Msa1232860 AT1G12570.1 49.483 580 230 11 15 546 5 569 3.60e-178 514
Msa1232860 AT3G56060.1 49.097 554 229 8 32 547 31 569 9.30e-172 498
Msa1232860 AT5G51950.2 50.282 531 222 7 55 545 13 541 8.16e-171 495
Msa1232860 AT5G51950.3 47.931 580 244 11 14 545 5 574 1.07e-170 496
Msa1232860 AT5G51950.1 47.332 581 248 9 14 545 5 576 1.93e-170 495
Msa1232860 AT5G51930.2 48.381 556 230 10 29 545 8 545 3.33e-167 486
Msa1232860 AT5G51930.1 48.059 541 232 8 34 535 52 582 3.15e-161 472
Msa1232860 AT1G73050.1 42.599 554 234 12 34 546 41 551 1.16e-132 397
Msa1232860 AT1G14190.2 36.661 581 246 14 8 545 3 504 1.99e-106 329
Msa1232860 AT1G14190.1 37.873 536 224 10 53 545 14 483 2.59e-106 328
Msa1232860 AT1G14185.1 38.848 538 213 11 53 544 35 502 4.55e-106 327

Find 137 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGTTATGCTTAATTCTA+TGG 0.207984 8_2:-9467248 Msa1232860:CDS
CTCAATGTATATACCTTTCT+TGG 0.222864 8_2:+9461791 None:intergenic
TTATACTCTCAATCTTTAAT+TGG 0.238787 8_2:+9460256 None:intergenic
AAAATAACCCCTATAGCTTT+TGG 0.265030 8_2:+9462080 None:intergenic
AAGACACTGTTATCACAATT+TGG 0.265270 8_2:-9461009 Msa1232860:CDS
CATCAGTTGAAACAAAATAT+TGG 0.276015 8_2:+9466192 None:intergenic
TCCCAACAAAAGGATTATTA+AGG 0.280926 8_2:+9461901 None:intergenic
AACCAGAGGCAGACACTTAT+TGG 0.282197 8_2:-9467355 Msa1232860:five_prime_UTR
GGTAGTTAGTCCTGATTATA+AGG 0.296398 8_2:-9460957 Msa1232860:CDS
GCTGCCGAACTTCTTGCTTC+TGG 0.307768 8_2:-9462478 Msa1232860:CDS
AAATGAATTTAGTTTATTCT+TGG 0.310448 8_2:-9460479 Msa1232860:three_prime_UTR
TTCTGAAGAAATGTTACATT+TGG 0.311997 8_2:+9466257 None:intergenic
GAGAGACTCCATTGTCTATA+AGG 0.313156 8_2:+9462584 None:intergenic
TTCACCTATGATCATATATA+TGG 0.316069 8_2:-9462550 Msa1232860:CDS
GATGGAAAGTAACAACTTCT+AGG 0.318864 8_2:+9460219 None:intergenic
GGAAGATTGGCTGGTATATA+AGG 0.322423 8_2:-9460625 Msa1232860:exon
AAGTTCTGAAGTTCAACTTT+AGG 0.335800 8_2:+9461939 None:intergenic
CCCTGACAAACTGACTGTTT+TGG 0.340997 8_2:-9462452 Msa1232860:CDS
TGTTCCATATATATGATCAT+AGG 0.344794 8_2:+9462546 None:intergenic
GAGAGATAGGTTGGGAAGAT+TGG 0.344950 8_2:-9460638 Msa1232860:CDS
TTGAAATAGAGGTTAAAATA+AGG 0.345980 8_2:+9460393 None:intergenic
CCACTTAGCAATAGCATTTG+AGG 0.351329 8_2:+9461969 None:intergenic
AAAACAGTTGGATGTAGAAT+TGG 0.351762 8_2:-9460502 Msa1232860:three_prime_UTR
TCATAGGTGAAACCATTAAA+AGG 0.352465 8_2:+9462562 None:intergenic
GTAAAAGACCAAAAGCTATA+GGG 0.355550 8_2:-9462088 Msa1232860:CDS
ATGCTATTGCTAAGTGGAAT+TGG 0.367928 8_2:-9461963 Msa1232860:CDS
ATCAGTTGAAACAAAATATT+GGG 0.367998 8_2:+9466193 None:intergenic
GTGGCTTGAGGATTTGTTCC+TGG 0.372285 8_2:+9460881 None:intergenic
ATTGATGTAGTTGAAATTGA+TGG 0.375829 8_2:+9466401 None:intergenic
CACCATTTCAAAGAGCAGTT+AGG 0.377077 8_2:-9462612 Msa1232860:intron
ACCAAAACAGTCAGTTTGTC+AGG 0.378706 8_2:+9462451 None:intergenic
GGTAAAAGACCAAAAGCTAT+AGG 0.384043 8_2:-9462089 Msa1232860:CDS
GTTGTGTCATTGGCATGTTT+TGG 0.396676 8_2:+9461052 None:intergenic
AGCTTCTATTGATCTTTGCT+TGG 0.406011 8_2:+9461384 None:intergenic
CTCTAGGGAAGTTGTGTCAT+TGG 0.417433 8_2:+9461042 None:intergenic
ACCATTTCAAAGAGCAGTTA+GGG 0.418863 8_2:-9462611 Msa1232860:intron
ATCATTCCCTTCCCAACAAA+AGG 0.421128 8_2:+9461891 None:intergenic
AGCTTATGATTACATAATAG+TGG 0.425179 8_2:-9466372 Msa1232860:CDS
TGATGAACTGGCCTATTAGA+AGG 0.425489 8_2:+9461840 None:intergenic
GCTTCTATTGATCTTTGCTT+GGG 0.426743 8_2:+9461385 None:intergenic
TATGCTTAATTCTATGGCTA+TGG 0.429582 8_2:-9467242 Msa1232860:CDS
TGACCAAGCACTGCCAACTT+TGG 0.435089 8_2:+9461294 None:intergenic
ATATTGTCTAGTGGGGCAAT+TGG 0.437071 8_2:-9461996 Msa1232860:CDS
TGAGATAATGTTGCAGCTAA+AGG 0.437925 8_2:+9466329 None:intergenic
GTTGGCAGTGCTTGGTCAGC+AGG 0.440167 8_2:-9461289 Msa1232860:CDS
CATATATATGGAACAAAAGT+TGG 0.443993 8_2:-9462538 Msa1232860:CDS
TGTCCAAAGTTGGCAGTGCT+TGG 0.445458 8_2:-9461297 Msa1232860:CDS
TTTATGTTTGTACAGGTACA+TGG 0.453526 8_2:-9460674 Msa1232860:intron
ACATCAAGAACCTTATAATC+AGG 0.455898 8_2:+9460947 None:intergenic
TATTGTCTAGTGGGGCAATT+GGG 0.458461 8_2:-9461995 Msa1232860:CDS
GATCTAAAGCGCTGCGTCGA+AGG 0.461736 8_2:-9461193 Msa1232860:CDS
GATAGGTTGGGAAGATTGGC+TGG 0.469904 8_2:-9460634 Msa1232860:CDS
GGCTTTGTCTTGTCCAAAGT+TGG 0.471094 8_2:-9461307 Msa1232860:CDS
AACCAATAAGTGTCTGCCTC+TGG 0.473502 8_2:+9467353 None:intergenic
TGTCTTTGCAGAATTGCTCT+AGG 0.474027 8_2:+9461026 None:intergenic
ATCTAAAGCGCTGCGTCGAA+GGG 0.477111 8_2:-9461192 Msa1232860:CDS
GTTTCCAGAAGCAAGAAGTT+CGG 0.478164 8_2:+9462474 None:intergenic
ATAGTGGGAGGTGGAACTGC+AGG 0.480876 8_2:-9466356 Msa1232860:CDS
CATACCGGTTGAAGCATTCA+AGG 0.487710 8_2:-9461332 Msa1232860:CDS
GTTACATTTGGATTAGTGAA+AGG 0.501737 8_2:+9466269 None:intergenic
TGACAGTAGTCTTCACACTA+AGG 0.504403 8_2:+9461083 None:intergenic
TGTATGAGTGACTGATGAAC+TGG 0.507225 8_2:+9461828 None:intergenic
CCTCCCTTGAATGCTTCAAC+CGG 0.507817 8_2:+9461328 None:intergenic
GTGAAGTGATATTGTCTAGT+GGG 0.511977 8_2:-9462004 Msa1232860:CDS
AAATATTGGGACGCTGAAGT+TGG 0.513818 8_2:+9466206 None:intergenic
GGAGGTAGTTCTATCAATGC+TGG 0.520008 8_2:-9466137 Msa1232860:CDS
ACTGTAGGTATCACCAAGAA+AGG 0.520351 8_2:-9461804 Msa1232860:CDS
GAGGAATAAGCGAGACATAC+CGG 0.524830 8_2:-9461347 Msa1232860:CDS
ACGCAGCGCTTTAGATCGTA+TGG 0.530328 8_2:+9461199 None:intergenic
AGTGTATTAGTACTTGAAAG+AGG 0.535526 8_2:-9466299 Msa1232860:CDS
CCTCAAATGCTATTGCTAAG+TGG 0.535945 8_2:-9461969 Msa1232860:CDS
ATGGCAGTGAATGCTGCTGT+TGG 0.541836 8_2:+9461746 None:intergenic
TCAAGCCACTGTGATGATGA+TGG 0.542953 8_2:-9460867 Msa1232860:CDS
ACTGTACCAACTGAAGCCAT+TGG 0.544672 8_2:+9467276 None:intergenic
TGAAGCCATTGGAATTTCAC+AGG 0.546339 8_2:+9467287 None:intergenic
TATAGCCTGTGAAATTCCAA+TGG 0.548153 8_2:-9467292 Msa1232860:exon
TGTGTAGTTTGTGAAGTGTT+CGG 0.549240 8_2:+9461141 None:intergenic
GTCTTTGCAGAATTGCTCTA+GGG 0.551481 8_2:+9461027 None:intergenic
AACTTTCTACCTCATTGTCA+AGG 0.552525 8_2:-9467213 Msa1232860:intron
TCTATTGATCTTTGCTTGGG+AGG 0.552836 8_2:+9461388 None:intergenic
AGAGGCAGACACTTATTGGT+TGG 0.554580 8_2:-9467351 Msa1232860:five_prime_UTR
CCAAAACAGTCAGTTTGTCA+GGG 0.555053 8_2:+9462452 None:intergenic
GAAACAACATGAGGCAAGGT+TGG 0.555365 8_2:-9462042 Msa1232860:CDS
ATATATGGAACAAAAGTTGG+TGG 0.555460 8_2:-9462535 Msa1232860:CDS
AGCAGCATTCACTGCCATCA+TGG 0.557126 8_2:-9461741 Msa1232860:CDS
ACGTTGAACCATCGACGACT+CGG 0.557454 8_2:+9460915 None:intergenic
TGGATGACTGAAGTAGTTGA+AGG 0.572474 8_2:+9461219 None:intergenic
TGGTGGATGTCATGTGGGGA+AGG 0.574542 8_2:-9460978 Msa1232860:CDS
TCAGAACTTCCACATTACCT+TGG 0.575737 8_2:-9466240 Msa1232860:CDS
TACCATGGTGGATGTCATGT+GGG 0.575939 8_2:-9460983 Msa1232860:CDS
TAAAAGACCAAAAGCTATAG+GGG 0.577729 8_2:-9462087 Msa1232860:CDS
AGATTGGCTGGTATATAAGG+AGG 0.583141 8_2:-9460622 Msa1232860:exon
GAAATTCCAATGGCTTCAGT+TGG 0.585684 8_2:-9467282 Msa1232860:exon
GAAGTTCGGCAGCTGTATGT+CGG 0.587570 8_2:+9462488 None:intergenic
ATCACAATTTGGCATTACCA+TGG 0.588471 8_2:-9460998 Msa1232860:CDS
AAGTAGTTGAAGGTAACAGC+AGG 0.592244 8_2:+9461229 None:intergenic
TTATGTTTGTACAGGTACAT+GGG 0.592434 8_2:-9460673 Msa1232860:intron
AAAGGTCTGCCAAGGTAATG+TGG 0.593850 8_2:+9466231 None:intergenic
GATTACATAATAGTGGGAGG+TGG 0.596948 8_2:-9466365 Msa1232860:CDS
GCTTATGATTACATAATAGT+GGG 0.598220 8_2:-9466371 Msa1232860:CDS
TTACCATGGTGGATGTCATG+TGG 0.600001 8_2:-9460984 Msa1232860:CDS
ATCATCATCACAGTGGCTTG+AGG 0.602679 8_2:+9460869 None:intergenic
CAAGAAAGGTATATACATTG+AGG 0.602724 8_2:-9461790 Msa1232860:CDS
AAGAATGAACCTTGACAATG+AGG 0.604252 8_2:+9467204 None:intergenic
ATATACATTGAGGCTAGTAG+TGG 0.605558 8_2:-9461780 Msa1232860:CDS
CACAAAACAAGACCAACCAG+AGG 0.607838 8_2:-9467369 Msa1232860:five_prime_UTR
GTCAGCAGGCGAGCTCAAGT+TGG 0.608313 8_2:-9461275 Msa1232860:CDS
AGTTTGTGAAGTGTTCGGAC+TGG 0.612729 8_2:+9461146 None:intergenic
AAGCTATTGAAGCTTACAAG+AGG 0.615855 8_2:-9461366 Msa1232860:CDS
CAAGCCACTGTGATGATGAT+GGG 0.617926 8_2:-9460866 Msa1232860:CDS
CAGTCACTCATACAAACTGT+AGG 0.619113 8_2:-9461819 Msa1232860:CDS
AATAAGTGTCTGCCTCTGGT+TGG 0.622203 8_2:+9467357 None:intergenic
GGGACGCTGAAGTTGGTGAA+AGG 0.625947 8_2:+9466213 None:intergenic
ACAATTTGGCATTACCATGG+TGG 0.626064 8_2:-9460995 Msa1232860:CDS
ATGGGAAACAACATGAGGCA+AGG 0.628125 8_2:-9462046 Msa1232860:CDS
AGCAGGATTGTCATTCACGT+TGG 0.628430 8_2:+9461246 None:intergenic
TAGTGGGAGGTGGAACTGCA+GGG 0.634105 8_2:-9466355 Msa1232860:CDS
TCTATACTAGAGCAAGCTCA+AGG 0.634433 8_2:-9466112 Msa1232860:intron
TCAACGTTTACTGAATCACC+AGG 0.636189 8_2:-9460899 Msa1232860:CDS
AGTTGGTGAAAGGTCTGCCA+AGG 0.638962 8_2:+9466223 None:intergenic
AGTGAAGTGATATTGTCTAG+TGG 0.640229 8_2:-9462005 Msa1232860:CDS
TGAAGTGATATTGTCTAGTG+GGG 0.641566 8_2:-9462003 Msa1232860:CDS
AGGGATAGCCTTATAGACAA+TGG 0.642396 8_2:-9462592 Msa1232860:CDS
CAGGTGACATGATACCATGA+TGG 0.646745 8_2:+9461727 None:intergenic
CCGGTTGAAGCATTCAAGGG+AGG 0.653682 8_2:-9461328 Msa1232860:CDS
ATACCGGTTGAAGCATTCAA+GGG 0.659872 8_2:-9461331 Msa1232860:CDS
TATGATTACATAATAGTGGG+AGG 0.665381 8_2:-9466368 Msa1232860:CDS
CCACTGTGATGATGATGGGA+AGG 0.666047 8_2:-9460862 Msa1232860:intron
TCATGGTATCATGTCACCTG+AGG 0.666139 8_2:-9461724 Msa1232860:intron
CTGCGTCGAAGGGATCAGCA+TGG 0.676042 8_2:-9461182 Msa1232860:CDS
GTATTAGTACTTGAAAGAGG+TGG 0.684983 8_2:-9466296 Msa1232860:CDS
TGAAAATGGGAAACAACATG+AGG 0.689884 8_2:-9462051 Msa1232860:CDS
TCCCCACATGACATCCACCA+TGG 0.705965 8_2:+9460981 None:intergenic
TCAGAACTTGAACATCTCAG+TGG 0.718530 8_2:-9461925 Msa1232860:CDS
ACCATGGTGGATGTCATGTG+GGG 0.735002 8_2:-9460982 Msa1232860:CDS
AAGGTTAAGAAGTCTCTCTG+CGG 0.750641 8_2:+9461102 None:intergenic
CCTTCCCATCATCATCACAG+TGG 0.775919 8_2:+9460862 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATAATAAAAAAATTTA+GGG + chr8_2:9461956-9461975 None:intergenic 0.0%
!!! TAAGAAATTTTTTCTAATAT+TGG + chr8_2:9461635-9461654 None:intergenic 10.0%
!!! TATTATTTTATTTTTTGACA+CGG + chr8_2:9461895-9461914 None:intergenic 10.0%
!! CAATTTAAAAATAAATAGTT+CGG - chr8_2:9462398-9462417 Msa1232860:intron 10.0%
!!! TAGATTTATATATTTGTTTT+TGG - chr8_2:9462709-9462728 Msa1232860:intron 10.0%
!! AGAATTTAAGAAAATAAAAA+TGG - chr8_2:9462882-9462901 Msa1232860:intron 10.0%
!!! CTATTTATTATTTTTAAACT+AGG + chr8_2:9463598-9463617 None:intergenic 10.0%
!! AAAAAATTTATACTCTAATA+AGG - chr8_2:9464844-9464863 Msa1232860:intron 10.0%
!! TTTATATACTAAATTATAAG+TGG + chr8_2:9466075-9466094 None:intergenic 10.0%
!!! GTAAAATCTATTTTTTAATT+AGG - chr8_2:9467271-9467290 Msa1232860:CDS 10.0%
!!! ATTCTAATCTCTTTAATTTT+TGG - chr8_2:9460555-9460574 Msa1232860:three_prime_UTR 15.0%
!! TTATAAAAATAAGCTGAAAA+CGG + chr8_2:9460851-9460870 None:intergenic 15.0%
!!! ATAGTACTATTTTTATGTTA+TGG + chr8_2:9460988-9461007 None:intergenic 15.0%
!!! TATTTTTATTTGTTCTTTTG+TGG - chr8_2:9461021-9461040 Msa1232860:CDS 15.0%
!! TAACAAAAAAAATTAATTGC+AGG - chr8_2:9461144-9461163 Msa1232860:CDS 15.0%
!!! TACTTGCTTTTTTAATAAAT+GGG + chr8_2:9461182-9461201 None:intergenic 15.0%
!! TGAATATGTGTAAATAAATT+TGG - chr8_2:9461726-9461745 Msa1232860:CDS 15.0%
!! GAATATGTGTAAATAAATTT+GGG - chr8_2:9461727-9461746 Msa1232860:CDS 15.0%
!! AATATGTGTAAATAAATTTG+GGG - chr8_2:9461728-9461747 Msa1232860:CDS 15.0%
!! AAAATTAATCATCAAAACTA+AGG + chr8_2:9462059-9462078 None:intergenic 15.0%
!!! CAACTAAATACTTTTTATTT+GGG - chr8_2:9463270-9463289 Msa1232860:intron 15.0%
!!! AACTAAATACTTTTTATTTG+GGG - chr8_2:9463271-9463290 Msa1232860:intron 15.0%
!!! GCTCAAATAATTTTTATTTA+GGG + chr8_2:9463350-9463369 None:intergenic 15.0%
!!! GACTAAATACTTTTTATTTA+AGG - chr8_2:9463460-9463479 Msa1232860:intron 15.0%
!!! AATATACACTTTTGTTTTTA+GGG + chr8_2:9463896-9463915 None:intergenic 15.0%
!!! TAATATACACTTTTGTTTTT+AGG + chr8_2:9463897-9463916 None:intergenic 15.0%
!!! ACTTAATTAAATTTTGTTGT+TGG + chr8_2:9464130-9464149 None:intergenic 15.0%
!! AATATAGTTAAATAACAGAA+AGG + chr8_2:9464334-9464353 None:intergenic 15.0%
!! ATTTAACTATATTGAGAAAT+AGG - chr8_2:9464341-9464360 Msa1232860:intron 15.0%
!! GTATATAATTGTAAAAAAGA+TGG - chr8_2:9464373-9464392 Msa1232860:intron 15.0%
!!! TTAATTTTGATATACACATT+TGG - chr8_2:9464713-9464732 Msa1232860:intron 15.0%
!! TTTAAATTTATATACACGAT+TGG + chr8_2:9464763-9464782 None:intergenic 15.0%
!! ATTAAATCCAAAATCTTATA+TGG - chr8_2:9464876-9464895 Msa1232860:intron 15.0%
!!! TTATTTTCAATGATGAAAAT+GGG - chr8_2:9465550-9465569 Msa1232860:intron 15.0%
!!! AAAGTTTAAATAATCACTTT+TGG - chr8_2:9465945-9465964 Msa1232860:intron 15.0%
!! AAAGAAAAAAAAATTACTTC+TGG + chr8_2:9466164-9466183 None:intergenic 15.0%
!!! AAATGAATTTAGTTTATTCT+TGG - chr8_2:9467135-9467154 Msa1232860:intron 15.0%
!!! TTAATTTTTGGTTGCAATTT+TGG - chr8_2:9460567-9460586 Msa1232860:three_prime_UTR 20.0%
!!! CAATTTATCTCAGAATTTTT+AGG - chr8_2:9460619-9460638 Msa1232860:exon 20.0%
!! TAAAAATTGTACAACTAGTT+AGG - chr8_2:9460962-9460981 Msa1232860:CDS 20.0%
!! AGTTAATAAGAGACTAAAAT+TGG - chr8_2:9461119-9461138 Msa1232860:CDS 20.0%
!!! GTACTTGCTTTTTTAATAAA+TGG + chr8_2:9461183-9461202 None:intergenic 20.0%
!! ATCAGTTGAAACAAAATATT+GGG + chr8_2:9461424-9461443 None:intergenic 20.0%
!! TCATTCAAAATAATGAAAAG+TGG + chr8_2:9461577-9461596 None:intergenic 20.0%
!! ATTTATTATCAAACATGGAA+TGG + chr8_2:9461865-9461884 None:intergenic 20.0%
!! TGTGTATTTATTATCAAACA+TGG + chr8_2:9461870-9461889 None:intergenic 20.0%
!! GTAGTAAATCATTATTGAAA+TGG - chr8_2:9462326-9462345 Msa1232860:intron 20.0%
!! ATTATTACAATAAGACCAAA+GGG - chr8_2:9462434-9462453 Msa1232860:CDS 20.0%
!!! ATATTTGTTTTTGGTAACAT+CGG - chr8_2:9462718-9462737 Msa1232860:intron 20.0%
!! ATCAACAAGAAAGTAAAAAA+GGG - chr8_2:9462829-9462848 Msa1232860:intron 20.0%
!! AACAATTAATTCTTAATGGA+AGG + chr8_2:9462916-9462935 None:intergenic 20.0%
!! CCTAAACAATTAATTCTTAA+TGG + chr8_2:9462920-9462939 None:intergenic 20.0%
!! CCATTAAGAATTAATTGTTT+AGG - chr8_2:9462917-9462936 Msa1232860:intron 20.0%
!! ATTAAATTAAATGCTACATG+TGG - chr8_2:9463028-9463047 Msa1232860:intron 20.0%
!! GAAATACATTCATTGTTATA+AGG - chr8_2:9463091-9463110 Msa1232860:intron 20.0%
!!! CATTATTTTTTGAAAGAGAA+GGG - chr8_2:9463230-9463249 Msa1232860:intron 20.0%
!!! ATTATTTTTTGAAAGAGAAG+GGG - chr8_2:9463231-9463250 Msa1232860:intron 20.0%
!!! CCAAATAAAAAGTATTTAGT+TGG + chr8_2:9463272-9463291 None:intergenic 20.0%
!!! CCAACTAAATACTTTTTATT+TGG - chr8_2:9463269-9463288 Msa1232860:intron 20.0%
!!! CGCTCAAATAATTTTTATTT+AGG + chr8_2:9463351-9463370 None:intergenic 20.0%
!!! AGAATTTTTAAAAAACTCAC+AGG - chr8_2:9463616-9463635 Msa1232860:intron 20.0%
!! TTTATGTAAGCAACAAAATT+TGG + chr8_2:9463766-9463785 None:intergenic 20.0%
!! TAATTAAGTTCATTACTACT+TGG - chr8_2:9464141-9464160 Msa1232860:intron 20.0%
!!! TAATTAGTTTCTCCAAATAT+AGG - chr8_2:9464202-9464221 Msa1232860:intron 20.0%
!! TATAATTGTAAAAAAGATGG+AGG - chr8_2:9464376-9464395 Msa1232860:intron 20.0%
!!! ATCAAAGTCAAATATTTCTA+AGG - chr8_2:9464792-9464811 Msa1232860:intron 20.0%
!! AGATAACTTATGACTAAAAT+AGG - chr8_2:9465484-9465503 Msa1232860:intron 20.0%
!!! GTTATTTTCAATGATGAAAA+TGG - chr8_2:9465549-9465568 Msa1232860:intron 20.0%
!! ATAGTAACATCTAATTGTTA+AGG + chr8_2:9466022-9466041 None:intergenic 20.0%
!!! ACTTGTGTAATTAGATTTTA+GGG + chr8_2:9466882-9466901 None:intergenic 20.0%
!!! AACTTGTGTAATTAGATTTT+AGG + chr8_2:9466883-9466902 None:intergenic 20.0%
!! TAATGTATTTATGTTTGTAC+AGG - chr8_2:9466933-9466952 Msa1232860:intron 20.0%
!! AAAAGAAAACAAAAAACAGT+TGG - chr8_2:9467100-9467119 Msa1232860:intron 20.0%
!! TTGAAATAGAGGTTAAAATA+AGG + chr8_2:9467224-9467243 None:intergenic 20.0%
!!! TTATTTTAACCTCTATTTCA+AGG - chr8_2:9467223-9467242 Msa1232860:CDS 20.0%
!!! TATTTTAACCTCTATTTCAA+GGG - chr8_2:9467224-9467243 Msa1232860:CDS 20.0%
!! TTATACTCTCAATCTTTAAT+TGG + chr8_2:9467361-9467380 None:intergenic 20.0%
!! TCTTGTTATGCTTAATTCTA+TGG - chr8_2:9460366-9460385 Msa1232860:three_prime_UTR 25.0%
!! TTTCTTTTGTTAGATGATCA+TGG - chr8_2:9460525-9460544 Msa1232860:three_prime_UTR 25.0%
! TTTAGGAAATATACAACTAG+TGG - chr8_2:9460636-9460655 Msa1232860:CDS 25.0%
! GTTTATTGTAGCTTATCTAA+TGG - chr8_2:9460759-9460778 Msa1232860:intron 25.0%
! AAACTATCTTATAGCTTACA+TGG - chr8_2:9460891-9460910 Msa1232860:CDS 25.0%
! ATTGATGTAGTTGAAATTGA+TGG + chr8_2:9461216-9461235 None:intergenic 25.0%
! AGCTTATGATTACATAATAG+TGG - chr8_2:9461242-9461261 Msa1232860:CDS 25.0%
! GCTTATGATTACATAATAGT+GGG - chr8_2:9461243-9461262 Msa1232860:CDS 25.0%
!! TTCTGAAGAAATGTTACATT+TGG + chr8_2:9461360-9461379 None:intergenic 25.0%
! CATCAGTTGAAACAAAATAT+TGG + chr8_2:9461425-9461444 None:intergenic 25.0%
!!! CAATATTTTGTTTCAACTGA+TGG - chr8_2:9461423-9461442 Msa1232860:intron 25.0%
! AACAATCTAAAAGAAGAGAA+AGG + chr8_2:9461607-9461626 None:intergenic 25.0%
!!! TCTATTTTTTAGACACCTTT+GGG + chr8_2:9461662-9461681 None:intergenic 25.0%
! TAACTCTAGCATTAAATGTT+CGG + chr8_2:9461999-9462018 None:intergenic 25.0%
! TTATAACTACTTACTACCTA+TGG - chr8_2:9462161-9462180 Msa1232860:intron 25.0%
! ATTTATTATGTGTGTACCAT+AGG + chr8_2:9462180-9462199 None:intergenic 25.0%
! AAATAAAAAGTTGCTTGCAT+GGG - chr8_2:9462228-9462247 Msa1232860:intron 25.0%
! CATTATTACAATAAGACCAA+AGG - chr8_2:9462433-9462452 Msa1232860:CDS 25.0%
! CTAATTCTATTCTATTTGAC+TGG + chr8_2:9462536-9462555 None:intergenic 25.0%
! TAGAATAGAATTAGAAATCC+TGG - chr8_2:9462542-9462561 Msa1232860:CDS 25.0%
! GCAAAATGTTAGTAATTAGA+GGG + chr8_2:9462579-9462598 None:intergenic 25.0%
! TGCAAAATGTTAGTAATTAG+AGG + chr8_2:9462580-9462599 None:intergenic 25.0%
!!! TATTTGTTTTTGGTAACATC+GGG - chr8_2:9462719-9462738 Msa1232860:intron 25.0%
! CATCAACAAGAAAGTAAAAA+AGG - chr8_2:9462828-9462847 Msa1232860:intron 25.0%
!!! AATGACTTTTTCACCAAAAT+TGG + chr8_2:9463124-9463143 None:intergenic 25.0%
!! TTTTGGTGAAAAAGTCATTA+AGG - chr8_2:9463125-9463144 Msa1232860:intron 25.0%
!!! GCATTATTTTTTGAAAGAGA+AGG - chr8_2:9463229-9463248 Msa1232860:intron 25.0%
! TTTACCCAATTAAGCTTAAT+TGG - chr8_2:9463550-9463569 Msa1232860:intron 25.0%
! TACACCAATTAAGCTTAATT+GGG + chr8_2:9463557-9463576 None:intergenic 25.0%
! ATACACCAATTAAGCTTAAT+TGG + chr8_2:9463558-9463577 None:intergenic 25.0%
! ATGCACTCAAATAAAAAAGT+AGG + chr8_2:9463714-9463733 None:intergenic 25.0%
! TTTGAAAATGCTAGAGATAA+AGG + chr8_2:9463967-9463986 None:intergenic 25.0%
! AGAAAGATAATCAAGAAGAA+AGG + chr8_2:9464247-9464266 None:intergenic 25.0%
!! CCATATTCCATATAAGATTT+TGG + chr8_2:9464886-9464905 None:intergenic 25.0%
! CCAAAATCTTATATGGAATA+TGG - chr8_2:9464883-9464902 Msa1232860:intron 25.0%
! TTCACCTATGATCATATATA+TGG - chr8_2:9465064-9465083 Msa1232860:intron 25.0%
! TGTTCCATATATATGATCAT+AGG + chr8_2:9465071-9465090 None:intergenic 25.0%
! CATATATATGGAACAAAAGT+TGG - chr8_2:9465076-9465095 Msa1232860:intron 25.0%
!!! TGAGATTTTGAGTTTTTGAT+TGG - chr8_2:9465338-9465357 Msa1232860:intron 25.0%
! TAGTCATAAGTTATCTTGAA+AGG + chr8_2:9465480-9465499 None:intergenic 25.0%
!! TCCTTAATAATCCTTTTGTT+GGG - chr8_2:9465712-9465731 Msa1232860:intron 25.0%
! GAAATATTATTACATACCTC+AGG + chr8_2:9465909-9465928 None:intergenic 25.0%
!! AACATTTTCTCAAACCTAAT+AGG - chr8_2:9465995-9466014 Msa1232860:intron 25.0%
!! TTTTACATGATAAACCAGAT+CGG - chr8_2:9466187-9466206 Msa1232860:CDS 25.0%
!!! AAAGAGTAGTTATTTTGAGT+TGG - chr8_2:9467249-9467268 Msa1232860:CDS 25.0%
!!! TTTTTGAAAAGCAAGCAAAA+TGG - chr8_2:9467329-9467348 Msa1232860:five_prime_UTR 25.0%
TATGCTTAATTCTATGGCTA+TGG - chr8_2:9460372-9460391 Msa1232860:three_prime_UTR 30.0%
ATATAGAGAGAAAGAGTCTT+TGG - chr8_2:9460725-9460744 Msa1232860:intron 30.0%
! TATGATTACATAATAGTGGG+AGG - chr8_2:9461246-9461265 Msa1232860:CDS 30.0%
AGTGTATTAGTACTTGAAAG+AGG - chr8_2:9461315-9461334 Msa1232860:CDS 30.0%
!! GTTACATTTGGATTAGTGAA+AGG + chr8_2:9461348-9461367 None:intergenic 30.0%
AAAATTTCTTAGACACCCAA+AGG - chr8_2:9461644-9461663 Msa1232860:intron 30.0%
!!! CTCTATTTTTTAGACACCTT+TGG + chr8_2:9461663-9461682 None:intergenic 30.0%
! GTTTTTATCTTCTTATGCAC+AGG - chr8_2:9462079-9462098 Msa1232860:CDS 30.0%
! AGGACATAGGGATTTTTAAA+TGG - chr8_2:9462099-9462118 Msa1232860:intron 30.0%
GAAATAAAAAGTTGCTTGCA+TGG - chr8_2:9462227-9462246 Msa1232860:intron 30.0%
ATGGGAAGAAAATAAAACTG+TGG - chr8_2:9462246-9462265 Msa1232860:intron 30.0%
AGAAGAAAGCCAAATACTAA+CGG + chr8_2:9462641-9462660 None:intergenic 30.0%
! GTAGATTTTTCCACGAAAAT+AGG + chr8_2:9462684-9462703 None:intergenic 30.0%
! ATTTTCGTGGAAAAATCTAC+TGG - chr8_2:9462684-9462703 Msa1232860:intron 30.0%
! TTTTCGTGGAAAAATCTACT+GGG - chr8_2:9462685-9462704 Msa1232860:intron 30.0%
CATAAATGTCACCAATACAA+GGG + chr8_2:9462967-9462986 None:intergenic 30.0%
ACATAAATGTCACCAATACA+AGG + chr8_2:9462968-9462987 None:intergenic 30.0%
ATGTTTGCACATTTCTTAGA+CGG - chr8_2:9462984-9463003 Msa1232860:intron 30.0%
ATATTTCCTAATAAGGACCA+TGG + chr8_2:9463164-9463183 None:intergenic 30.0%
GTGGTTCATATTTCCTAATA+AGG + chr8_2:9463171-9463190 None:intergenic 30.0%
!!! GTTACTTGTACGGTTTTTTA+GGG - chr8_2:9463205-9463224 Msa1232860:intron 30.0%
!!! TTACTTGTACGGTTTTTTAG+GGG - chr8_2:9463206-9463225 Msa1232860:intron 30.0%
TGTCCAATTAAATAGGGTTT+AGG - chr8_2:9463297-9463316 Msa1232860:intron 30.0%
GTCCAATTAAATAGGGTTTA+GGG - chr8_2:9463298-9463317 Msa1232860:intron 30.0%
AACCCTAAACCCTATTTAAT+TGG + chr8_2:9463303-9463322 None:intergenic 30.0%
! ATCTCTAGCATTTTCAAAAG+TGG - chr8_2:9463969-9463988 Msa1232860:intron 30.0%
AATCAAGAAGAAAGGAAGTT+TGG + chr8_2:9464239-9464258 None:intergenic 30.0%
AAAGCAAAAATGTAGCAGTA+TGG + chr8_2:9464512-9464531 None:intergenic 30.0%
GAAAACCCATCAAATGAAAT+TGG - chr8_2:9464602-9464621 Msa1232860:intron 30.0%
ACTCACCAATTTCATTTGAT+GGG + chr8_2:9464610-9464629 None:intergenic 30.0%
AACTCACCAATTTCATTTGA+TGG + chr8_2:9464611-9464630 None:intergenic 30.0%
! ATTGACTCACTAAATTCACT+TGG - chr8_2:9464642-9464661 Msa1232860:intron 30.0%
TCTAGTGTTAATACAAGACA+AGG + chr8_2:9464691-9464710 None:intergenic 30.0%
!! CTTTGAAATGGTGAAAACTT+TGG + chr8_2:9464995-9465014 None:intergenic 30.0%
TCATAGGTGAAACCATTAAA+AGG + chr8_2:9465055-9465074 None:intergenic 30.0%
ATATATGGAACAAAAGTTGG+TGG - chr8_2:9465079-9465098 Msa1232860:intron 30.0%
AGTCATTGATAGATATCGAA+TGG + chr8_2:9465382-9465401 None:intergenic 30.0%
GGTATTCAAATCCTAAGTTA+TGG - chr8_2:9465445-9465464 Msa1232860:intron 30.0%
ATCCTAAGTTATGGCATATT+AGG - chr8_2:9465454-9465473 Msa1232860:intron 30.0%
GTAAAAGACCAAAAGCTATA+GGG - chr8_2:9465526-9465545 Msa1232860:intron 30.0%
TAAAAGACCAAAAGCTATAG+GGG - chr8_2:9465527-9465546 Msa1232860:intron 30.0%
! AAAATAACCCCTATAGCTTT+TGG + chr8_2:9465537-9465556 None:intergenic 30.0%
!! AAGTTCTGAAGTTCAACTTT+AGG + chr8_2:9465678-9465697 None:intergenic 30.0%
! GTCCTTAATAATCCTTTTGT+TGG - chr8_2:9465711-9465730 Msa1232860:intron 30.0%
TCCCAACAAAAGGATTATTA+AGG + chr8_2:9465716-9465735 None:intergenic 30.0%
! TAATAATCCTTTTGTTGGGA+AGG - chr8_2:9465716-9465735 Msa1232860:intron 30.0%
! AATAATCCTTTTGTTGGGAA+GGG - chr8_2:9465717-9465736 Msa1232860:intron 30.0%
! CAGTTTTTGTTCCTTCTAAT+AGG - chr8_2:9465763-9465782 Msa1232860:intron 30.0%
CTCAATGTATATACCTTTCT+TGG + chr8_2:9465826-9465845 None:intergenic 30.0%
! CAAGAAAGGTATATACATTG+AGG - chr8_2:9465824-9465843 Msa1232860:intron 30.0%
!!! AATCACTTTTGGAATCCTTA+TGG - chr8_2:9465956-9465975 Msa1232860:intron 30.0%
AAATGTTTCTCAAACCAAAC+AGG + chr8_2:9465982-9466001 None:intergenic 30.0%
CTAATTGTTAAGGACCTATT+AGG + chr8_2:9466012-9466031 None:intergenic 30.0%
TATTAAGCAAATGTGCTTAG+TGG - chr8_2:9466130-9466149 Msa1232860:CDS 30.0%
AAGACACTGTTATCACAATT+TGG - chr8_2:9466605-9466624 Msa1232860:intron 30.0%
ACATCAAGAACCTTATAATC+AGG + chr8_2:9466670-9466689 None:intergenic 30.0%
TTTATGTTTGTACAGGTACA+TGG - chr8_2:9466940-9466959 Msa1232860:intron 30.0%
TTATGTTTGTACAGGTACAT+GGG - chr8_2:9466941-9466960 Msa1232860:intron 30.0%
!! AAGATTTTGAGAGATAGGTT+GGG - chr8_2:9466968-9466987 Msa1232860:intron 30.0%
AAAACAGTTGGATGTAGAAT+TGG - chr8_2:9467112-9467131 Msa1232860:intron 30.0%
TATAGCCTGTGAAATTCCAA+TGG - chr8_2:9460322-9460341 Msa1232860:three_prime_UTR 35.0%
AACTTTCTACCTCATTGTCA+AGG - chr8_2:9460401-9460420 Msa1232860:three_prime_UTR 35.0%
AAGAATGAACCTTGACAATG+AGG + chr8_2:9460413-9460432 None:intergenic 35.0%
TGAGATAATGTTGCAGCTAA+AGG + chr8_2:9461288-9461307 None:intergenic 35.0%
GTATTAGTACTTGAAAGAGG+TGG - chr8_2:9461318-9461337 Msa1232860:CDS 35.0%
! TGATGGAGTTTTCAATGCAA+GGG - chr8_2:9461440-9461459 Msa1232860:intron 35.0%
GATTACGTAAAGAACAATGC+TGG - chr8_2:9462278-9462297 Msa1232860:intron 35.0%
TTACAATAAGACCAAAGGGT+AGG - chr8_2:9462438-9462457 Msa1232860:CDS 35.0%
AGTTTGAAGATGTGACATGT+GGG + chr8_2:9462513-9462532 None:intergenic 35.0%
CTAGGGATATAGTTAAGCAT+AGG + chr8_2:9462615-9462634 None:intergenic 35.0%
!! AGTATTTGGCTTTCTTCTGT+TGG - chr8_2:9462643-9462662 Msa1232860:intron 35.0%
! TTATTAGCTGCCTATTTTCG+TGG - chr8_2:9462671-9462690 Msa1232860:intron 35.0%
TGGTAACATCGGGATATATT+TGG - chr8_2:9462729-9462748 Msa1232860:intron 35.0%
TCCTTTGTTAGTGATTAGGT+AGG - chr8_2:9463051-9463070 Msa1232860:intron 35.0%
TCCTACCTAATCACTAACAA+AGG + chr8_2:9463055-9463074 None:intergenic 35.0%
TTTGTTAGTGATTAGGTAGG+AGG - chr8_2:9463054-9463073 Msa1232860:intron 35.0%
TTGTTAGTGATTAGGTAGGA+GGG - chr8_2:9463055-9463074 Msa1232860:intron 35.0%
GAATGTATTTCCTTCAGATC+TGG + chr8_2:9463082-9463101 None:intergenic 35.0%
! ATAAGGAAAGCCTCCAATTT+TGG - chr8_2:9463108-9463127 Msa1232860:intron 35.0%
!!! GACTTTTTCACCAAAATTGG+AGG + chr8_2:9463121-9463140 None:intergenic 35.0%
TAGATTCCATGGTCCTTATT+AGG - chr8_2:9463155-9463174 Msa1232860:intron 35.0%
ATTAGGAAATATGAACCACC+AGG - chr8_2:9463172-9463191 Msa1232860:intron 35.0%
TTAGGAAATATGAACCACCA+GGG - chr8_2:9463173-9463192 Msa1232860:intron 35.0%
!!! CGTTACTTGTACGGTTTTTT+AGG - chr8_2:9463204-9463223 Msa1232860:intron 35.0%
!!! TACTTGTACGGTTTTTTAGG+GGG - chr8_2:9463207-9463226 Msa1232860:intron 35.0%
GGGTTGTGTCCAATTAAATA+GGG - chr8_2:9463291-9463310 Msa1232860:intron 35.0%
AAGGTTGTGTCCAATTAAGT+AGG - chr8_2:9463479-9463498 Msa1232860:intron 35.0%
AGGTTGTGTCCAATTAAGTA+GGG - chr8_2:9463480-9463499 Msa1232860:intron 35.0%
TGTCCAATTAAGTAGGGTTT+AGG - chr8_2:9463486-9463505 Msa1232860:intron 35.0%
GTCCAATTAAGTAGGGTTTA+GGG - chr8_2:9463487-9463506 Msa1232860:intron 35.0%
AACCCTAAACCCTACTTAAT+TGG + chr8_2:9463492-9463511 None:intergenic 35.0%
TAGCCTAAACATGTAGGTTT+AGG - chr8_2:9463740-9463759 Msa1232860:intron 35.0%
AGATATAGCATAGACAGCAA+AGG + chr8_2:9464092-9464111 None:intergenic 35.0%
GAACTGAAACAGCCTATATT+TGG + chr8_2:9464217-9464236 None:intergenic 35.0%
GCAGTATGGTTATAAACTCT+TGG + chr8_2:9464498-9464517 None:intergenic 35.0%
TTATATGGAATATGGCATGC+AGG - chr8_2:9464891-9464910 Msa1232860:intron 35.0%
TAGTAAATGAGTCATACCCT+TGG - chr8_2:9464945-9464964 Msa1232860:intron 35.0%
AGTAAATGAGTCATACCCTT+GGG - chr8_2:9464946-9464965 Msa1232860:intron 35.0%
ACCATTTCAAAGAGCAGTTA+GGG - chr8_2:9465003-9465022 Msa1232860:intron 35.0%
! AATGGAGTCTCTCCTTTTAA+TGG - chr8_2:9465040-9465059 Msa1232860:intron 35.0%
!! GGAACCATTTTTGACAGATT+TGG - chr8_2:9465100-9465119 Msa1232860:intron 35.0%
TGCAACGACAACTGAAAATT+CGG - chr8_2:9465415-9465434 Msa1232860:intron 35.0%
!!! AGGCAATATCCTATTTTTGC+AGG - chr8_2:9465504-9465523 Msa1232860:intron 35.0%
! GGTCTTTTACCTGCAAAAAT+AGG + chr8_2:9465516-9465535 None:intergenic 35.0%
GGTAAAAGACCAAAAGCTAT+AGG - chr8_2:9465525-9465544 Msa1232860:intron 35.0%
TGAAAATGGGAAACAACATG+AGG - chr8_2:9465563-9465582 Msa1232860:intron 35.0%
AGTGAAGTGATATTGTCTAG+TGG - chr8_2:9465609-9465628 Msa1232860:intron 35.0%
GTGAAGTGATATTGTCTAGT+GGG - chr8_2:9465610-9465629 Msa1232860:intron 35.0%
TGAAGTGATATTGTCTAGTG+GGG - chr8_2:9465611-9465630 Msa1232860:intron 35.0%
ATGCTATTGCTAAGTGGAAT+TGG - chr8_2:9465651-9465670 Msa1232860:intron 35.0%
GGAACAAAAACTGTGTTCAT+AGG + chr8_2:9465756-9465775 None:intergenic 35.0%
ATATACATTGAGGCTAGTAG+TGG - chr8_2:9465834-9465853 Msa1232860:intron 35.0%
GCTTCTATTGATCTTTGCTT+GGG + chr8_2:9466232-9466251 None:intergenic 35.0%
AGCTTCTATTGATCTTTGCT+TGG + chr8_2:9466233-9466252 None:intergenic 35.0%
AAGCTATTGAAGCTTACAAG+AGG - chr8_2:9466248-9466267 Msa1232860:CDS 35.0%
! TGTGTAGTTTGTGAAGTGTT+CGG + chr8_2:9466476-9466495 None:intergenic 35.0%
ATCACAATTTGGCATTACCA+TGG - chr8_2:9466616-9466635 Msa1232860:intron 35.0%
GGTAGTTAGTCCTGATTATA+AGG - chr8_2:9466657-9466676 Msa1232860:intron 35.0%
!! GAGTGAAGATTTTGAGAGAT+AGG - chr8_2:9466963-9466982 Msa1232860:intron 35.0%
!! GAAGATTTTGAGAGATAGGT+TGG - chr8_2:9466967-9466986 Msa1232860:intron 35.0%
! CTCTTTTTCCCTTGAAATAG+AGG + chr8_2:9467235-9467254 None:intergenic 35.0%
GATGGAAAGTAACAACTTCT+AGG + chr8_2:9467398-9467417 None:intergenic 35.0%
TGAAGCCATTGGAATTTCAC+AGG + chr8_2:9460330-9460349 None:intergenic 40.0%
GAAATTCCAATGGCTTCAGT+TGG - chr8_2:9460332-9460351 Msa1232860:three_prime_UTR 40.0%
! GATTACATAATAGTGGGAGG+TGG - chr8_2:9461249-9461268 Msa1232860:CDS 40.0%
TCAGAACTTCCACATTACCT+TGG - chr8_2:9461374-9461393 Msa1232860:CDS 40.0%
AAATATTGGGACGCTGAAGT+TGG + chr8_2:9461411-9461430 None:intergenic 40.0%
! CTGATGGAGTTTTCAATGCA+AGG - chr8_2:9461439-9461458 Msa1232860:intron 40.0%
! GATGGAGTTTTCAATGCAAG+GGG - chr8_2:9461441-9461460 Msa1232860:intron 40.0%
! AATGCAAGGGGAAGAGTTTT+AGG - chr8_2:9461453-9461472 Msa1232860:intron 40.0%
TCTATACTAGAGCAAGCTCA+AGG - chr8_2:9461502-9461521 Msa1232860:intron 40.0%
TCTTCTTATGCACAGGACAT+AGG - chr8_2:9462086-9462105 Msa1232860:CDS 40.0%
CTTCTTATGCACAGGACATA+GGG - chr8_2:9462087-9462106 Msa1232860:CDS 40.0%
AAAGATTGTGACCTACCCTT+TGG + chr8_2:9462452-9462471 None:intergenic 40.0%
GAGTTTGAAGATGTGACATG+TGG + chr8_2:9462514-9462533 None:intergenic 40.0%
TAGAGGGAGAAAAGTTAACC+AGG + chr8_2:9462563-9462582 None:intergenic 40.0%
CCAAATACTAACGGTCACTA+GGG + chr8_2:9462632-9462651 None:intergenic 40.0%
ATAGTGAACCACCCTTGTAT+TGG - chr8_2:9462953-9462972 Msa1232860:intron 40.0%
AAATGTCACCAATACAAGGG+TGG + chr8_2:9462964-9462983 None:intergenic 40.0%
GTGGTCCTTTGTTAGTGATT+AGG - chr8_2:9463047-9463066 Msa1232860:intron 40.0%
! AAGGTGCTCTTTAGATTCCA+TGG - chr8_2:9463144-9463163 Msa1232860:intron 40.0%
TAGGAAATATGAACCACCAG+GGG - chr8_2:9463174-9463193 Msa1232860:intron 40.0%
GGCTATTAGCGTTACTTGTA+CGG - chr8_2:9463195-9463214 Msa1232860:intron 40.0%
!! TTTGAAAGAGAAGGGGCATT+AGG - chr8_2:9463238-9463257 Msa1232860:intron 40.0%
!! TTGAAAGAGAAGGGGCATTA+GGG - chr8_2:9463239-9463258 Msa1232860:intron 40.0%
GGGGTTGTGTCCAATTAAAT+AGG - chr8_2:9463290-9463309 Msa1232860:intron 40.0%
GATCTCTAGCCTAAACATGT+AGG - chr8_2:9463734-9463753 Msa1232860:intron 40.0%
TGGCCTAAACCTACATGTTT+AGG + chr8_2:9463746-9463765 None:intergenic 40.0%
GCTGCGGTTTAGTAGATATA+TGG - chr8_2:9464038-9464057 Msa1232860:intron 40.0%
GGACGTTGCTAGGAAAAAAT+TGG + chr8_2:9464066-9464085 None:intergenic 40.0%
TAGCATAGACAGCAAAGGTA+GGG + chr8_2:9464087-9464106 None:intergenic 40.0%
ATAGCATAGACAGCAAAGGT+AGG + chr8_2:9464088-9464107 None:intergenic 40.0%
GGCATGCAGGTTTATAAACA+AGG - chr8_2:9464904-9464923 Msa1232860:intron 40.0%
TGCAGGTTTATAAACAAGGC+AGG - chr8_2:9464908-9464927 Msa1232860:intron 40.0%
GCAGGTTTATAAACAAGGCA+GGG - chr8_2:9464909-9464928 Msa1232860:intron 40.0%
GTTTATAAACAAGGCAGGGT+GGG - chr8_2:9464913-9464932 Msa1232860:intron 40.0%
! CAATTTGCTTCTCAACCCAA+GGG + chr8_2:9464964-9464983 None:intergenic 40.0%
! ACAATTTGCTTCTCAACCCA+AGG + chr8_2:9464965-9464984 None:intergenic 40.0%
CACCATTTCAAAGAGCAGTT+AGG - chr8_2:9465002-9465021 Msa1232860:intron 40.0%
! TCCCTAACTGCTCTTTGAAA+TGG + chr8_2:9465007-9465026 None:intergenic 40.0%
!! AGGGATAGCCTTATAGACAA+TGG - chr8_2:9465022-9465041 Msa1232860:intron 40.0%
GAGAGACTCCATTGTCTATA+AGG + chr8_2:9465033-9465052 None:intergenic 40.0%
GCGACCAAATCTGTCAAAAA+TGG + chr8_2:9465107-9465126 None:intergenic 40.0%
GTTTCCAGAAGCAAGAAGTT+CGG + chr8_2:9465143-9465162 None:intergenic 40.0%
CCAAAACAGTCAGTTTGTCA+GGG + chr8_2:9465165-9465184 None:intergenic 40.0%
ACCAAAACAGTCAGTTTGTC+AGG + chr8_2:9465166-9465185 None:intergenic 40.0%
AACTGAAAATTCGGACTGCA+GGG - chr8_2:9465424-9465443 Msa1232860:intron 40.0%
GGCCTAATATGCCATAACTT+AGG + chr8_2:9465459-9465478 None:intergenic 40.0%
ATATTGTCTAGTGGGGCAAT+TGG - chr8_2:9465618-9465637 Msa1232860:intron 40.0%
TATTGTCTAGTGGGGCAATT+GGG - chr8_2:9465619-9465638 Msa1232860:intron 40.0%
CCACTTAGCAATAGCATTTG+AGG + chr8_2:9465648-9465667 None:intergenic 40.0%
CCTCAAATGCTATTGCTAAG+TGG - chr8_2:9465645-9465664 Msa1232860:intron 40.0%
TCAGAACTTGAACATCTCAG+TGG - chr8_2:9465689-9465708 Msa1232860:intron 40.0%
ATCATTCCCTTCCCAACAAA+AGG + chr8_2:9465726-9465745 None:intergenic 40.0%
! TGATGAACTGGCCTATTAGA+AGG + chr8_2:9465777-9465796 None:intergenic 40.0%
TGTATGAGTGACTGATGAAC+TGG + chr8_2:9465789-9465808 None:intergenic 40.0%
CAGTCACTCATACAAACTGT+AGG - chr8_2:9465795-9465814 Msa1232860:intron 40.0%
ACTGTAGGTATCACCAAGAA+AGG - chr8_2:9465810-9465829 Msa1232860:intron 40.0%
TCTATTGATCTTTGCTTGGG+AGG + chr8_2:9466229-9466248 None:intergenic 40.0%
! ATACCGGTTGAAGCATTCAA+GGG - chr8_2:9466283-9466302 Msa1232860:CDS 40.0%
AAGTAGTTGAAGGTAACAGC+AGG + chr8_2:9466388-9466407 None:intergenic 40.0%
TGGATGACTGAAGTAGTTGA+AGG + chr8_2:9466398-9466417 None:intergenic 40.0%
AAGGTTAAGAAGTCTCTCTG+CGG + chr8_2:9466515-9466534 None:intergenic 40.0%
TGACAGTAGTCTTCACACTA+AGG + chr8_2:9466534-9466553 None:intergenic 40.0%
!! GTTGTGTCATTGGCATGTTT+TGG + chr8_2:9466565-9466584 None:intergenic 40.0%
GTCTTTGCAGAATTGCTCTA+GGG + chr8_2:9466590-9466609 None:intergenic 40.0%
TGTCTTTGCAGAATTGCTCT+AGG + chr8_2:9466591-9466610 None:intergenic 40.0%
ACAATTTGGCATTACCATGG+TGG - chr8_2:9466619-9466638 Msa1232860:intron 40.0%
TCAACGTTTACTGAATCACC+AGG - chr8_2:9466715-9466734 Msa1232860:intron 40.0%
! GGAAGATTGGCTGGTATATA+AGG - chr8_2:9466989-9467008 Msa1232860:intron 40.0%
! AGATTGGCTGGTATATAAGG+AGG - chr8_2:9466992-9467011 Msa1232860:intron 40.0%
CACAAAACAAGACCAACCAG+AGG - chr8_2:9460245-9460264 Msa1232860:three_prime_UTR 45.0%
AATAAGTGTCTGCCTCTGGT+TGG + chr8_2:9460260-9460279 None:intergenic 45.0%
AACCAGAGGCAGACACTTAT+TGG - chr8_2:9460259-9460278 Msa1232860:three_prime_UTR 45.0%
AACCAATAAGTGTCTGCCTC+TGG + chr8_2:9460264-9460283 None:intergenic 45.0%
AGAGGCAGACACTTATTGGT+TGG - chr8_2:9460263-9460282 Msa1232860:three_prime_UTR 45.0%
ACTGTACCAACTGAAGCCAT+TGG + chr8_2:9460341-9460360 None:intergenic 45.0%
AAAGGTCTGCCAAGGTAATG+TGG + chr8_2:9461386-9461405 None:intergenic 45.0%
! GGAGGTAGTTCTATCAATGC+TGG - chr8_2:9461477-9461496 Msa1232860:intron 45.0%
CCCTAGTGACCGTTAGTATT+TGG - chr8_2:9462629-9462648 Msa1232860:intron 45.0%
GCCAAATACTAACGGTCACT+AGG + chr8_2:9462633-9462652 None:intergenic 45.0%
TCTGCAACTAACACATGCTG+CGG - chr8_2:9464022-9464041 Msa1232860:intron 45.0%
GGTTTATAAACAAGGCAGGG+TGG - chr8_2:9464912-9464931 Msa1232860:intron 45.0%
! CCCTGACAAACTGACTGTTT+TGG - chr8_2:9465162-9465181 Msa1232860:intron 45.0%
CAACTGAAAATTCGGACTGC+AGG - chr8_2:9465423-9465442 Msa1232860:intron 45.0%
ATGGGAAACAACATGAGGCA+AGG - chr8_2:9465568-9465587 Msa1232860:intron 45.0%
GAAACAACATGAGGCAAGGT+TGG - chr8_2:9465572-9465591 Msa1232860:intron 45.0%
CAGGTGACATGATACCATGA+TGG + chr8_2:9465890-9465909 None:intergenic 45.0%
TCATGGTATCATGTCACCTG+AGG - chr8_2:9465890-9465909 Msa1232860:intron 45.0%
TGGAATCCTTATGGCCTGTT+TGG - chr8_2:9465965-9465984 Msa1232860:intron 45.0%
CTCAAACCAAACAGGCCATA+AGG + chr8_2:9465974-9465993 None:intergenic 45.0%
TTGTGTGAAGTTGTCCGATC+TGG + chr8_2:9466204-9466223 None:intergenic 45.0%
GAGGAATAAGCGAGACATAC+CGG - chr8_2:9466267-9466286 Msa1232860:CDS 45.0%
! CATACCGGTTGAAGCATTCA+AGG - chr8_2:9466282-9466301 Msa1232860:CDS 45.0%
! GGCTTTGTCTTGTCCAAAGT+TGG - chr8_2:9466307-9466326 Msa1232860:CDS 45.0%
AGCAGGATTGTCATTCACGT+TGG + chr8_2:9466371-9466390 None:intergenic 45.0%
! AGTTTGTGAAGTGTTCGGAC+TGG + chr8_2:9466471-9466490 None:intergenic 45.0%
! CTCTAGGGAAGTTGTGTCAT+TGG + chr8_2:9466575-9466594 None:intergenic 45.0%
!! TTACCATGGTGGATGTCATG+TGG - chr8_2:9466630-9466649 Msa1232860:intron 45.0%
!! TACCATGGTGGATGTCATGT+GGG - chr8_2:9466631-9466650 Msa1232860:intron 45.0%
ATCATCATCACAGTGGCTTG+AGG + chr8_2:9466748-9466767 None:intergenic 45.0%
! TCAAGCCACTGTGATGATGA+TGG - chr8_2:9466747-9466766 Msa1232860:intron 45.0%
! CAAGCCACTGTGATGATGAT+GGG - chr8_2:9466748-9466767 Msa1232860:intron 45.0%
! GAGAGATAGGTTGGGAAGAT+TGG - chr8_2:9466976-9466995 Msa1232860:intron 45.0%
!! CTTTAATAATAAAAAAATTT+AGG + chr8_2:9461957-9461976 None:intergenic 5.0%
!! ATTTAGTATATAAAAAAATA+CGG - chr8_2:9466081-9466100 Msa1232860:intron 5.0%
!! AGTTGGTGAAAGGTCTGCCA+AGG + chr8_2:9461394-9461413 None:intergenic 50.0%
!!! GCAAGGGGAAGAGTTTTAGG+TGG - chr8_2:9461456-9461475 Msa1232860:intron 50.0%
!!! AGGGGAAGAGTTTTAGGTGG+AGG - chr8_2:9461459-9461478 Msa1232860:intron 50.0%
CAAGTAACGCTAATAGCCCC+TGG + chr8_2:9463193-9463212 None:intergenic 50.0%
GAAGTTCGGCAGCTGTATGT+CGG + chr8_2:9465129-9465148 None:intergenic 50.0%
ATGGCAGTGAATGCTGCTGT+TGG + chr8_2:9465871-9465890 None:intergenic 50.0%
AGCAGCATTCACTGCCATCA+TGG - chr8_2:9465873-9465892 Msa1232860:intron 50.0%
CCTCCCTTGAATGCTTCAAC+CGG + chr8_2:9466289-9466308 None:intergenic 50.0%
TGTCCAAAGTTGGCAGTGCT+TGG - chr8_2:9466317-9466336 Msa1232860:CDS 50.0%
! TGACCAAGCACTGCCAACTT+TGG + chr8_2:9466323-9466342 None:intergenic 50.0%
! ACGCAGCGCTTTAGATCGTA+TGG + chr8_2:9466418-9466437 None:intergenic 50.0%
!! ATCTAAAGCGCTGCGTCGAA+GGG - chr8_2:9466422-9466441 Msa1232860:CDS 50.0%
!! ACCATGGTGGATGTCATGTG+GGG - chr8_2:9466632-9466651 Msa1232860:intron 50.0%
ACGTTGAACCATCGACGACT+CGG + chr8_2:9466702-9466721 None:intergenic 50.0%
! GTGGCTTGAGGATTTGTTCC+TGG + chr8_2:9466736-9466755 None:intergenic 50.0%
CCTTCCCATCATCATCACAG+TGG + chr8_2:9466755-9466774 None:intergenic 50.0%
!! CCACTGTGATGATGATGGGA+AGG - chr8_2:9466752-9466771 Msa1232860:intron 50.0%
! GATAGGTTGGGAAGATTGGC+TGG - chr8_2:9466980-9466999 Msa1232860:intron 50.0%
! ATAGTGGGAGGTGGAACTGC+AGG - chr8_2:9461258-9461277 Msa1232860:CDS 55.0%
TAGTGGGAGGTGGAACTGCA+GGG - chr8_2:9461259-9461278 Msa1232860:CDS 55.0%
!! GGGACGCTGAAGTTGGTGAA+AGG + chr8_2:9461404-9461423 None:intergenic 55.0%
GTAGGAGGGTCCAGATCTGA+AGG - chr8_2:9463069-9463088 Msa1232860:intron 55.0%
GTAACGCTAATAGCCCCTGG+TGG + chr8_2:9463190-9463209 None:intergenic 55.0%
GCAAAGGTAGGGACGTTGCT+AGG + chr8_2:9464076-9464095 None:intergenic 55.0%
GCTGCCGAACTTCTTGCTTC+TGG - chr8_2:9465136-9465155 Msa1232860:intron 55.0%
! CCGGTTGAAGCATTCAAGGG+AGG - chr8_2:9466286-9466305 Msa1232860:CDS 55.0%
!! GATCTAAAGCGCTGCGTCGA+AGG - chr8_2:9466421-9466440 Msa1232860:CDS 55.0%
TCCCCACATGACATCCACCA+TGG + chr8_2:9466636-9466655 None:intergenic 55.0%
! TGGTGGATGTCATGTGGGGA+AGG - chr8_2:9466636-9466655 Msa1232860:intron 55.0%
GTTGGCAGTGCTTGGTCAGC+AGG - chr8_2:9466325-9466344 Msa1232860:CDS 60.0%
GTCAGCAGGCGAGCTCAAGT+TGG - chr8_2:9466339-9466358 Msa1232860:CDS 60.0%
CTGCGTCGAAGGGATCAGCA+TGG - chr8_2:9466432-9466451 Msa1232860:CDS 60.0%
GACAGACTCCGAGTCGTCGA+TGG - chr8_2:9466691-9466710 Msa1232860:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 9460218 9467418 9460218 ID=Msa1232860;Name=Msa1232860
chr8_2 mRNA 9460218 9467418 9460218 ID=Msa1232860-mRNA-1;Parent=Msa1232860;Name=Msa1232860-mRNA-1;_AED=0.05;_eAED=0.05;_QI=123|0.8|0.83|1|1|1|6|409|552
chr8_2 exon 9460218 9460681 9460218 ID=Msa1232860-mRNA-1:exon:3743;Parent=Msa1232860-mRNA-1
chr8_2 exon 9460863 9461431 9460863 ID=Msa1232860-mRNA-1:exon:3742;Parent=Msa1232860-mRNA-1
chr8_2 exon 9461725 9462110 9461725 ID=Msa1232860-mRNA-1:exon:3741;Parent=Msa1232860-mRNA-1
chr8_2 exon 9462413 9462621 9462413 ID=Msa1232860-mRNA-1:exon:3740;Parent=Msa1232860-mRNA-1
chr8_2 exon 9466113 9466470 9466113 ID=Msa1232860-mRNA-1:exon:3739;Parent=Msa1232860-mRNA-1
chr8_2 exon 9467214 9467418 9467214 ID=Msa1232860-mRNA-1:exon:3738;Parent=Msa1232860-mRNA-1
chr8_2 five_prime_UTR 9467296 9467418 9467296 ID=Msa1232860-mRNA-1:five_prime_utr;Parent=Msa1232860-mRNA-1
chr8_2 CDS 9467214 9467295 9467214 ID=Msa1232860-mRNA-1:cds;Parent=Msa1232860-mRNA-1
chr8_2 CDS 9466113 9466470 9466113 ID=Msa1232860-mRNA-1:cds;Parent=Msa1232860-mRNA-1
chr8_2 CDS 9462413 9462621 9462413 ID=Msa1232860-mRNA-1:cds;Parent=Msa1232860-mRNA-1
chr8_2 CDS 9461725 9462110 9461725 ID=Msa1232860-mRNA-1:cds;Parent=Msa1232860-mRNA-1
chr8_2 CDS 9460863 9461431 9460863 ID=Msa1232860-mRNA-1:cds;Parent=Msa1232860-mRNA-1
chr8_2 CDS 9460627 9460681 9460627 ID=Msa1232860-mRNA-1:cds;Parent=Msa1232860-mRNA-1
chr8_2 three_prime_UTR 9460218 9460626 9460218 ID=Msa1232860-mRNA-1:three_prime_utr;Parent=Msa1232860-mRNA-1
Gene Sequence

>Msa1232860

ATGGCTTCAGTTGGTACAGTCAAATTCTTGTTATGCTTAATTCTATGGCTATGGAACTGCAACTTTCTACCTCATTGTCAAGGTAAACAAGAGTACCCATTTATTAAAAAAGCAAGTACATTTTCATCACCATCAATTTCAACTACATCAATCAACAAAGCTTATGATTACATAATAGTGGGAGGTGGAACTGCAGGGTGTCCTTTAGCTGCAACATTATCTCAAAACTTCAGTGTATTAGTACTTGAAAGAGGTGGTGTTCCTTTCACTAATCCAAATGTAACATTTCTTCAGAACTTCCACATTACCTTGGCAGACCTTTCACCAACTTCAGCGTCCCAATATTTTGTTTCAACTGATGGAGTTTTCAATGCAAGGGGAAGAGTTTTAGGTGGAGGTAGTTCTATCAATGCTGGTTTCTATACTAGAGCAAGCTCAAGAGCAGTTAGGGATAGCCTTATAGACAATGGAGTCTCTCCTTTTAATGGTTTCACCTATGATCATATATATGGAACAAAAGTTGGTGGAACCATTTTTGACAGATTTGGTCGCCGACATACAGCTGCCGAACTTCTTGCTTCTGGAAACCCTGACAAACTGACTGTTTTGGTTCATGCTACTGTCCAAAAGATTGTTTTTGATACAACAGGTAAAAGACCAAAAGCTATAGGGGTTATTTTCAATGATGAAAATGGGAAACAACATGAGGCAAGGTTGGTAAATGATATGCAAAGTGAAGTGATATTGTCTAGTGGGGCAATTGGGTCTCCTCAAATGCTATTGCTAAGTGGAATTGGTCCTAAAGTTGAACTTCAGAACTTGAACATCTCAGTGGTCCTTAATAATCCTTTTGTTGGGAAGGGAATGATAGATAATCCTATGAACACAGTTTTTGTTCCTTCTAATAGGCCAGTTCATCAGTCACTCATACAAACTGTAGGTATCACCAAGAAAGGTATATACATTGAGGCTAGTAGTGGATTTAGTCAGTCCAACAGCAGCATTCACTGCCATCATGGTATCATGTCACCTGAGATCGGACAACTTCACACAATTCCTCCCAAGCAAAGATCAATAGAAGCTATTGAAGCTTACAAGAGGAATAAGCGAGACATACCGGTTGAAGCATTCAAGGGAGGCTTTGTCTTGTCCAAAGTTGGCAGTGCTTGGTCAGCAGGCGAGCTCAAGTTGGTCAACACCAACGTGAATGACAATCCTGCTGTTACCTTCAACTACTTCAGTCATCCATACGATCTAAAGCGCTGCGTCGAAGGGATCAGCATGGCGATTAAAGTAGTCCAGTCCGAACACTTCACAAACTACACATTATGTAAAAGAGAAACCGCAGAGAGACTTCTTAACCTTAGTGTGAAGACTACTGTCAACTTCATACCAAAACATGCCAATGACACAACTTCCCTAGAGCAATTCTGCAAAGACACTGTTATCACAATTTGGCATTACCATGGTGGATGTCATGTGGGGAAGGTAGTTAGTCCTGATTATAAGGTTCTTGATGTTGACAGACTCCGAGTCGTCGATGGTTCAACGTTTACTGAATCACCAGGAACAAATCCTCAAGCCACTGTGATGATGATGGGAAGGTACATGGGAGTGAAGATTTTGAGAGATAGGTTGGGAAGATTGGCTGGTATATAA

Protein sequence

>Msa1232860

MASVGTVKFLLCLILWLWNCNFLPHCQGKQEYPFIKKASTFSSPSISTTSINKAYDYIIVGGGTAGCPLAATLSQNFSVLVLERGGVPFTNPNVTFLQNFHITLADLSPTSASQYFVSTDGVFNARGRVLGGGSSINAGFYTRASSRAVRDSLIDNGVSPFNGFTYDHIYGTKVGGTIFDRFGRRHTAAELLASGNPDKLTVLVHATVQKIVFDTTGKRPKAIGVIFNDENGKQHEARLVNDMQSEVILSSGAIGSPQMLLLSGIGPKVELQNLNISVVLNNPFVGKGMIDNPMNTVFVPSNRPVHQSLIQTVGITKKGIYIEASSGFSQSNSSIHCHHGIMSPEIGQLHTIPPKQRSIEAIEAYKRNKRDIPVEAFKGGFVLSKVGSAWSAGELKLVNTNVNDNPAVTFNYFSHPYDLKRCVEGISMAIKVVQSEHFTNYTLCKRETAERLLNLSVKTTVNFIPKHANDTTSLEQFCKDTVITIWHYHGGCHVGKVVSPDYKVLDVDRLRVVDGSTFTESPGTNPQATVMMMGRYMGVKILRDRLGRLAGI*