AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0603680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0603680 MtrunA17_Chr4g0032441 96.939 490 15 0 1 490 1 490 0.0 981
Msa0603680 MtrunA17_Chr2g0328781 71.546 485 136 2 3 487 19 501 0.0 730
Msa0603680 MtrunA17_Chr8g0372381 57.023 477 198 2 9 481 13 486 0.0 575
Msa0603680 MtrunA17_Chr8g0384741 51.064 470 227 1 9 478 73 539 1.00e-165 479
Msa0603680 MtrunA17_Chr3g0124811 50.426 470 230 1 9 478 22 488 8.23e-165 475
Msa0603680 MtrunA17_Chr1g0159811 49.882 425 206 2 9 433 20 437 6.26e-141 414
Msa0603680 MtrunA17_Chr3g0129271 53.125 224 100 2 175 396 34 254 1.10e-75 238
Msa0603680 MtrunA17_Chr2g0294411 28.375 437 279 12 12 424 88 514 1.19e-37 145
Msa0603680 MtrunA17_Chr3g0118081 28.889 450 300 10 13 451 90 530 1.89e-36 141
Msa0603680 MtrunA17_Chr2g0310091 29.674 337 225 9 101 431 193 523 3.83e-36 140
Msa0603680 MtrunA17_Chr4g0009161 63.107 103 37 1 174 275 118 220 8.65e-35 130
Msa0603680 MtrunA17_Chr4g0059521 28.918 453 289 13 20 451 60 500 1.74e-34 135
Msa0603680 MtrunA17_Chr3g0118121 28.000 450 304 10 13 451 60 500 4.43e-34 134
Msa0603680 MtrunA17_Chr3g0117861 29.197 411 269 14 38 438 135 533 7.98e-30 122
Msa0603680 MtrunA17_Chr4g0059221 29.613 439 282 17 13 438 111 535 1.18e-29 122
Msa0603680 MtrunA17_Chr8g0390651 29.830 352 224 13 99 438 154 494 3.46e-29 120
Msa0603680 MtrunA17_Chr8g0390631 29.661 354 222 13 99 438 145 485 1.80e-28 118
Msa0603680 MtrunA17_Chr8g0365221 29.684 411 267 15 38 438 134 532 9.13e-28 116
Msa0603680 MtrunA17_Chr6g0485301 29.060 351 228 10 99 438 153 493 4.28e-27 114
Msa0603680 MtrunA17_Chr4g0074171 30.000 320 210 10 105 420 158 467 4.85e-23 102
Msa0603680 MtrunA17_Chr6g0485311 28.829 333 214 11 104 424 156 477 8.53e-23 101
Msa0603680 MtrunA17_Chr1g0149961 27.586 319 219 7 105 420 158 467 1.21e-20 94.7
Msa0603680 MtrunA17_Chr2g0279751 26.891 357 230 10 102 440 147 490 2.42e-18 87.8
Msa0603680 MtrunA17_Chr4g0049641 26.039 361 228 12 102 440 174 517 3.48e-18 87.4
Msa0603680 MtrunA17_Chr2g0300801 25.496 353 242 11 102 444 152 493 1.72e-16 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0603680 AT4G36250.1 54.316 475 217 0 7 481 10 484 0.0 562
Msa0603680 AT1G44170.1 50.417 480 234 2 1 479 7 483 6.58e-169 485
Msa0603680 AT1G44170.2 50.417 480 234 2 1 479 7 483 6.58e-169 485
Msa0603680 AT4G34240.1 51.059 472 228 1 12 483 82 550 5.33e-163 473
Msa0603680 AT4G34240.4 51.059 472 228 1 12 483 67 535 6.04e-163 472
Msa0603680 AT1G44170.3 52.530 415 194 1 65 479 9 420 1.98e-157 454
Msa0603680 AT4G34240.3 51.951 410 194 1 74 483 2 408 1.84e-146 425
Msa0603680 AT4G34240.2 52.885 312 144 1 12 323 82 390 5.89e-101 308
Msa0603680 AT3G66658.2 27.350 468 309 10 20 462 96 557 8.61e-39 149
Msa0603680 AT3G66658.1 27.540 443 295 9 20 442 96 532 1.22e-38 148
Msa0603680 AT1G74920.2 28.966 435 291 11 27 451 69 495 2.99e-38 146
Msa0603680 AT1G74920.1 28.966 435 291 11 27 451 74 500 4.27e-38 145
Msa0603680 AT1G79440.1 30.564 337 222 9 101 431 184 514 8.83e-38 145
Msa0603680 AT3G48170.1 27.727 440 290 12 27 451 74 500 8.29e-35 136
Msa0603680 AT1G23800.1 27.626 438 292 14 13 438 101 525 3.51e-29 120
Msa0603680 AT3G48000.1 28.696 345 231 9 102 438 192 529 2.42e-26 112
Msa0603680 AT3G24503.1 26.437 348 235 11 102 438 155 492 8.29e-24 104
Msa0603680 AT2G24270.2 28.840 319 215 7 105 420 198 507 1.30e-23 104
Msa0603680 AT2G24270.4 28.190 337 230 7 105 438 158 485 2.19e-23 103
Msa0603680 AT2G24270.3 28.190 337 230 7 105 438 158 485 2.28e-23 103
Msa0603680 AT2G24270.1 28.190 337 230 7 105 438 158 485 2.28e-23 103
Msa0603680 AT1G54100.2 24.716 352 240 10 105 444 154 492 1.84e-18 88.6
Msa0603680 AT1G54100.1 24.716 352 240 10 105 444 154 492 1.84e-18 88.6
Msa0603680 AT1G23800.2 29.603 277 174 12 13 279 101 366 8.15e-14 73.6
Msa0603680 AT2G14170.1 22.883 437 301 13 26 440 167 589 3.65e-12 69.3
Msa0603680 AT2G14170.2 22.936 436 302 13 26 440 58 480 4.30e-12 68.6
Msa0603680 AT2G14170.3 22.821 390 274 11 26 398 167 546 8.78e-11 64.7

Find 132 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTATAATTATGATTATT+TGG 0.060046 4_2:-48334728 Msa0603680:CDS
ACACTTTAATGCGAGATTTA+AGG 0.163652 4_2:+48337214 None:intergenic
TGGACTCACTTTCATCTTCT+TGG 0.177885 4_2:-48336271 Msa0603680:CDS
ATGGCCCTCATGCAAGATTT+AGG 0.178064 4_2:-48339839 Msa0603680:CDS
GGATTGGTCCTTGTTATTCT+TGG 0.192443 4_2:-48334706 Msa0603680:CDS
CGGATTCTTGTGGGAAAATA+TGG 0.217738 4_2:-48335842 Msa0603680:CDS
TAAAATTTCTTATTATATAA+AGG 0.222774 4_2:+48334499 None:intergenic
CTTGGACAATAAAGCCATTA+AGG 0.225321 4_2:-48336657 Msa0603680:CDS
GCTTTGCAATGTTTGGTTCT+TGG 0.225752 4_2:+48335076 None:intergenic
GTTAAAGAATCTGTGGTTTA+TGG 0.236418 4_2:-48335531 Msa0603680:CDS
TGGGACAAAATCTTCTTTAC+AGG 0.243473 4_2:-48336587 Msa0603680:intron
TGGAGAGAATCACAACTAAA+AGG 0.259745 4_2:-48339902 Msa0603680:CDS
CCAAAGAGGTATCAAAATAA+TGG 0.272297 4_2:-48339996 Msa0603680:exon
AAAGAGTTGCTGTTCAAAAT+TGG 0.272793 4_2:-48335771 Msa0603680:intron
ATGAAACTTACAGTAATAAT+TGG 0.278416 4_2:+48335315 None:intergenic
TCATTCTGCTTTGCAATGTT+TGG 0.283271 4_2:+48335069 None:intergenic
TTCATCTTCTTGGGATTTAG+AGG 0.286545 4_2:-48336261 Msa0603680:intron
TGTTCCTCTCTACTTGCTTC+TGG 0.295903 4_2:-48336692 Msa0603680:CDS
CCACCCAACTCCAGTGTTAC+AGG 0.297157 4_2:+48336311 None:intergenic
TTGATATTAGAAAATATAAA+AGG 0.301178 4_2:-48334068 Msa0603680:three_prime_UTR
GGAGTAGGTGGAAGTGGATT+TGG 0.322807 4_2:-48334880 Msa0603680:CDS
TCTTATAATTATGATTATTT+GGG 0.326416 4_2:-48334727 Msa0603680:CDS
TGGCCCTCATGCAAGATTTA+GGG 0.327127 4_2:-48339838 Msa0603680:CDS
GGACTCACTTTCATCTTCTT+GGG 0.339156 4_2:-48336270 Msa0603680:CDS
TGAGTTTGCAACTCTTATAT+AGG 0.362355 4_2:-48334586 Msa0603680:three_prime_UTR
GGTTCTTGGTGAAAACATAA+AGG 0.370058 4_2:+48335090 None:intergenic
AAATAGAGGCTTTGTACATT+AGG 0.375102 4_2:+48334455 None:intergenic
GTTCTTGGTGAAAACATAAA+GGG 0.379552 4_2:+48335091 None:intergenic
TCATCTTGGAATTTGCCCTT+TGG 0.381304 4_2:-48337009 Msa0603680:intron
TTCTGGCATTACCGCTTACT+TGG 0.386362 4_2:-48336675 Msa0603680:CDS
CTTGAAAGCAATGCTATTGC+AGG 0.388263 4_2:+48337075 None:intergenic
CATTAAAGTGTCTGAAAGAT+TGG 0.391877 4_2:-48337202 Msa0603680:CDS
CAGTAATAATTGGAAGTAAT+GGG 0.392841 4_2:+48335325 None:intergenic
CAAAGAGGTATCAAAATAAT+GGG 0.394252 4_2:-48339995 Msa0603680:exon
ACAGTAATAATTGGAAGTAA+TGG 0.412012 4_2:+48335324 None:intergenic
ATTTATTGAGCCAACAATCT+TGG 0.414711 4_2:-48335394 Msa0603680:CDS
GCACCTGACCCCTGTAACAC+TGG 0.415048 4_2:-48336321 Msa0603680:CDS
CTATAGTGTTGGAATGTTGT+GGG 0.417700 4_2:+48335613 None:intergenic
TATCAAAATAATGGGAACTT+TGG 0.423131 4_2:-48339987 Msa0603680:exon
CTTCTCCTTTGAGAAAATTG+AGG 0.428608 4_2:+48334395 None:intergenic
TAATTATGATTATTTGGGAT+TGG 0.431846 4_2:-48334722 Msa0603680:CDS
TTGTCTTTGGAACCACTGAT+AGG 0.441527 4_2:-48336770 Msa0603680:CDS
GAAAGTGAGTCCACAACTGC+AGG 0.443232 4_2:+48336281 None:intergenic
GTGTGGATCAAGAAAATGTT+TGG 0.443390 4_2:-48335642 Msa0603680:CDS
ACATAAAGGGCAAGAGGCTT+AGG 0.443929 4_2:+48335104 None:intergenic
AGAAATTGTTCATGAGCCTC+TGG 0.445976 4_2:-48337049 Msa0603680:CDS
GAAACTTCTTGATGATCAAA+GGG 0.446465 4_2:-48335553 Msa0603680:CDS
TTAACTAACAAGGCAAGATC+TGG 0.446747 4_2:+48334662 None:intergenic
TCCCACAAGAATCCGCTTCA+CGG 0.447941 4_2:+48335850 None:intergenic
AGAAACTTCTTGATGATCAA+AGG 0.450473 4_2:-48335554 Msa0603680:CDS
AAAAGAGAATGATATATTCA+TGG 0.458500 4_2:-48339858 Msa0603680:CDS
TCGTTCTCATTATTTCATCT+TGG 0.461385 4_2:-48337023 Msa0603680:CDS
TGCAGCAGTGTTAAAACCTT+CGG 0.463948 4_2:-48336729 Msa0603680:CDS
ACCCCTGTAACACTGGAGTT+GGG 0.465154 4_2:-48336314 Msa0603680:CDS
TTTGGTGGAGTAGGTGGAAG+TGG 0.473180 4_2:-48334886 Msa0603680:CDS
TGGAAAATGCCCTGCAGTTG+TGG 0.478847 4_2:-48336291 Msa0603680:CDS
TGCCTTGTTAGTTAATTAGC+GGG 0.481989 4_2:-48334654 Msa0603680:exon
TTATAAGGTGGAATTGATGA+AGG 0.484071 4_2:-48335664 Msa0603680:intron
CACCCAACTCCAGTGTTACA+GGG 0.484632 4_2:+48336312 None:intergenic
GCTATAGTGTTGGAATGTTG+TGG 0.485996 4_2:+48335612 None:intergenic
GTTGATCGGTTCGAAAATAG+AGG 0.489482 4_2:+48334441 None:intergenic
AACTATCCTTGCTATAGTGT+TGG 0.490148 4_2:+48335602 None:intergenic
ATGATATCTGAAACATCATC+TGG 0.495766 4_2:-48335050 Msa0603680:CDS
ACTCCAGTGTTACAGGGGTC+AGG 0.499908 4_2:+48336318 None:intergenic
AGCAATGCTATTGCAGGTAG+TGG 0.500402 4_2:+48337081 None:intergenic
TGAAACTTATTTGCAGTCCA+TGG 0.501038 4_2:+48334763 None:intergenic
AGATTGCTCATGTTCGTTGT+GGG 0.501065 4_2:-48334329 Msa0603680:three_prime_UTR
GGAGAGAATCACAACTAAAA+GGG 0.502833 4_2:-48339901 Msa0603680:CDS
TATTGAGCCAACAATCTTGG+TGG 0.503945 4_2:-48335391 Msa0603680:CDS
AGTCTACCATTTGGTGGAGT+AGG 0.504143 4_2:-48334895 Msa0603680:CDS
GCAGCAGATAGTCTACCATT+TGG 0.506468 4_2:-48334904 Msa0603680:CDS
ACATTATTGCTGCATCAAGT+GGG 0.515989 4_2:+48335364 None:intergenic
GCCGTGAAGCGGATTCTTGT+GGG 0.520458 4_2:-48335851 Msa0603680:CDS
GAGCAATCTCACAAATCAGT+TGG 0.523332 4_2:+48334343 None:intergenic
AACATTATTGCTGCATCAAG+TGG 0.523734 4_2:+48335363 None:intergenic
GGAAAATATGGAACTTGTGC+TGG 0.526806 4_2:-48335830 Msa0603680:CDS
TTGCCTTGTTAGTTAATTAG+CGG 0.527728 4_2:-48334655 Msa0603680:exon
GGCCGTGAAGCGGATTCTTG+TGG 0.532962 4_2:-48335852 Msa0603680:CDS
CTGATAGGAGCTATAGCTGC+TGG 0.539917 4_2:-48336755 Msa0603680:CDS
TATTCAGGTGGAGAAGATTG+AGG 0.540712 4_2:-48335153 Msa0603680:intron
GTTTCCCTAAATCTTGCATG+AGG 0.549833 4_2:+48339834 None:intergenic
GCAAGTAGAGAGGAACATGC+TGG 0.549902 4_2:+48336698 None:intergenic
AAAGCCATTAAGGTTATCCA+AGG 0.556662 4_2:-48336647 Msa0603680:CDS
AATAATGGGAACTTTGGAGA+TGG 0.556684 4_2:-48339981 Msa0603680:exon
CTACCATTTGGTGGAGTAGG+TGG 0.556973 4_2:-48334892 Msa0603680:CDS
GTGGATTTGGCATGTACCAT+GGG 0.562857 4_2:-48334867 Msa0603680:CDS
GCAGATAGTCTACCATTTGG+TGG 0.563379 4_2:-48334901 Msa0603680:CDS
CTTCCACCTACTCCACCAAA+TGG 0.564341 4_2:+48334889 None:intergenic
GACCCCTGTAACACTGGAGT+TGG 0.566126 4_2:-48336315 Msa0603680:CDS
CCAAAATATTAATTCCAAAG+AGG 0.566584 4_2:-48340010 None:intergenic
AAATAAGTTTCAACTACTTG+AGG 0.566706 4_2:-48334752 Msa0603680:CDS
GAGATTGCTCATGTTCGTTG+TGG 0.567664 4_2:-48334330 Msa0603680:three_prime_UTR
TTGGTGACTGAATGTGTCAA+AGG 0.568162 4_2:+48334837 None:intergenic
GGCTTTATTGTCCAAGTAAG+CGG 0.568727 4_2:+48336664 None:intergenic
GTATTGAATTCATAAGCTCT+AGG 0.568775 4_2:-48335127 Msa0603680:CDS
AAAGAAAACTAATCGTTGAT+CGG 0.573248 4_2:+48334427 None:intergenic
TATTAGAAAATATAAAAGGT+AGG 0.574776 4_2:-48334064 Msa0603680:three_prime_UTR
AAAGAATCTGTGGTTTATGG+TGG 0.584820 4_2:-48335528 Msa0603680:CDS
AGATTGGATGTCAAGCAAGA+AGG 0.596883 4_2:-48337186 Msa0603680:intron
AATATCAGGTAGTGCACGAG+TGG 0.599899 4_2:-48336372 Msa0603680:intron
CATTATTGCTGCATCAAGTG+GGG 0.601518 4_2:+48335365 None:intergenic
AGGGTTGCGTCGTTTCCTAG+TGG 0.601929 4_2:-48339882 Msa0603680:CDS
ATTATAAGGTGGCCGTGAAG+CGG 0.604767 4_2:-48335862 Msa0603680:intron
GTGAAAACATAAAGGGCAAG+AGG 0.607410 4_2:+48335098 None:intergenic
GAAATTGTTCATGAGCCTCT+GGG 0.609785 4_2:-48337048 Msa0603680:CDS
TCAAAGGGTTAAAGAATCTG+TGG 0.611910 4_2:-48335538 Msa0603680:CDS
AAGCCATTAAGGTTATCCAA+GGG 0.614555 4_2:-48336646 Msa0603680:CDS
AGGTGGAATTGATGAAGGTG+TGG 0.618298 4_2:-48335659 Msa0603680:CDS
CACCCGCTAATTAACTAACA+AGG 0.618800 4_2:+48334652 None:intergenic
CCTGTAACACTGGAGTTGGG+TGG 0.622351 4_2:-48336311 Msa0603680:CDS
ATATCAGGTAGTGCACGAGT+GGG 0.622510 4_2:-48336371 Msa0603680:intron
AACATTCCAACACTATAGCA+AGG 0.624404 4_2:-48335608 Msa0603680:CDS
AACTTATTTGCAGTCCATGG+TGG 0.626124 4_2:+48334766 None:intergenic
AGCAATTGACTATGTCATTG+TGG 0.626758 4_2:-48335795 Msa0603680:CDS
TTTCCCTAAATCTTGCATGA+GGG 0.634134 4_2:+48339835 None:intergenic
AATAATTGGTCGGATTCCTG+TGG 0.634417 4_2:+48336620 None:intergenic
GCAGCTATAGCTCCTATCAG+TGG 0.638522 4_2:+48336758 None:intergenic
AGTGGATTTGGCATGTACCA+TGG 0.640616 4_2:-48334868 Msa0603680:CDS
AAAGTGAGTCCACAACTGCA+GGG 0.644119 4_2:+48336282 None:intergenic
TGTCAAAGGAAAATTTCCCA+TGG 0.654780 4_2:+48334851 None:intergenic
ATTATGATATCTAATACACT+TGG 0.658060 4_2:-48334117 Msa0603680:three_prime_UTR
ATTATTGCTGCATCAAGTGG+GGG 0.663599 4_2:+48335366 None:intergenic
AATGCCAGAAGCAAGTAGAG+AGG 0.669071 4_2:+48336688 None:intergenic
TTTGGTATAGATATCCACCA+TGG 0.672421 4_2:-48334780 Msa0603680:CDS
TATCAGGTAGTGCACGAGTG+GGG 0.672922 4_2:-48336370 Msa0603680:intron
CGTCTCTAAAAGCTTCAAGA+CGG 0.673616 4_2:+48339810 None:intergenic
ACCCAACTCCAGTGTTACAG+GGG 0.674549 4_2:+48336313 None:intergenic
GCCATTAAGGTTATCCAAGG+GGG 0.676497 4_2:-48336644 Msa0603680:CDS
CATGCTGGAGACAACTCCGA+AGG 0.681456 4_2:+48336713 None:intergenic
AGCCATTAAGGTTATCCAAG+GGG 0.684321 4_2:-48336645 Msa0603680:CDS
TCTTTAATCCAAGAATAACA+AGG 0.695515 4_2:+48334698 None:intergenic
ATAATGAGAACGACACCCAG+AGG 0.731880 4_2:+48337033 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTATTTATTTTTTGGTA+AGG - chr4_2:48334343-48334362 Msa0603680:three_prime_UTR 10.0%
!!! AAAGTTAAATCATTTTTTTA+AGG - chr4_2:48335773-48335792 Msa0603680:CDS 10.0%
!! TAAAATTTAGTAATAAATGT+TGG - chr4_2:48336229-48336248 Msa0603680:intron 10.0%
!! TATTATTATATTCATATATC+CGG - chr4_2:48336563-48336582 Msa0603680:intron 10.0%
!!! TTTATTTTATTTTTATAAGG+TGG - chr4_2:48338381-48338400 Msa0603680:intron 10.0%
!! ATGCAAAAAAATAAAATAAA+GGG + chr4_2:48338879-48338898 None:intergenic 10.0%
!! TATGCAAAAAAATAAAATAA+AGG + chr4_2:48338880-48338899 None:intergenic 10.0%
!! TCTTATAATTATGATTATTT+GGG - chr4_2:48339330-48339349 Msa0603680:intron 10.0%
!! ATATCAAAAATTATATATCA+AGG + chr4_2:48339976-48339995 None:intergenic 10.0%
!! TTGATATTAGAAAATATAAA+AGG - chr4_2:48339989-48340008 Msa0603680:exon 10.0%
!! CAAAAAATAAATAAATTCCT+TGG + chr4_2:48334340-48334359 None:intergenic 15.0%
!!! CAAGGAATTTATTTATTTTT+TGG - chr4_2:48334338-48334357 Msa0603680:three_prime_UTR 15.0%
!!! GGATATCTTTTTTTTTATAT+AGG + chr4_2:48334464-48334483 None:intergenic 15.0%
!!! TTTTATTAATGGTTACTTTA+TGG + chr4_2:48334485-48334504 None:intergenic 15.0%
!!! TATTTTTCTTAACTTTTTCA+TGG + chr4_2:48334650-48334669 None:intergenic 15.0%
!! AATAAATTAGAGATAAACAA+AGG + chr4_2:48334918-48334937 None:intergenic 15.0%
!! TAAAATTTAAACATCACAAA+TGG + chr4_2:48335335-48335354 None:intergenic 15.0%
!!! TCATTTCTCAAATTTTATTT+GGG + chr4_2:48335471-48335490 None:intergenic 15.0%
!!! ATCATTTCTCAAATTTTATT+TGG + chr4_2:48335472-48335491 None:intergenic 15.0%
!! GTATATTTCCTAAAAATAAA+CGG - chr4_2:48336113-48336132 Msa0603680:intron 15.0%
!!! GAAAAGTTAAATCATTTTTA+AGG - chr4_2:48336145-48336164 Msa0603680:intron 15.0%
!! GAAATAATTTACTTTGATAT+AGG - chr4_2:48336951-48336970 Msa0603680:intron 15.0%
!! TTAATTAAATTCAAGTATTC+AGG - chr4_2:48338317-48338336 Msa0603680:intron 15.0%
!!! TGTTGTTATTTTTTAGTAAT+AGG + chr4_2:48338614-48338633 None:intergenic 15.0%
!!! TTTTTTGCATAATATTATTC+AGG - chr4_2:48338889-48338908 Msa0603680:intron 15.0%
!! GTTTGAACATTAATATAAAT+TGG + chr4_2:48339096-48339115 None:intergenic 15.0%
!! CTCTTATAATTATGATTATT+TGG - chr4_2:48339329-48339348 Msa0603680:intron 15.0%
!! TATTAGAAAATATAAAAGGT+AGG - chr4_2:48339993-48340012 Msa0603680:exon 15.0%
!!! AGAATATGAGAGAATATTTT+AGG - chr4_2:48334108-48334127 Msa0603680:three_prime_UTR 20.0%
!! AAAAGAGAATGATATATTCA+TGG - chr4_2:48334199-48334218 Msa0603680:three_prime_UTR 20.0%
!! AATAAATAAATTCCTTGGAT+TGG + chr4_2:48334335-48334354 None:intergenic 20.0%
!! AAATAAGATATATAACAGCA+TGG - chr4_2:48334434-48334453 Msa0603680:three_prime_UTR 20.0%
!! AGAGAATAAAACACTATTTA+AGG - chr4_2:48334525-48334544 Msa0603680:three_prime_UTR 20.0%
!! ATTGATCCATATAGATTATA+TGG + chr4_2:48334564-48334583 None:intergenic 20.0%
!!! GTGATGTTTAAATTTTATCT+AGG - chr4_2:48335338-48335357 Msa0603680:CDS 20.0%
!!! CATTTCTCAAATTTTATTTG+GGG + chr4_2:48335470-48335489 None:intergenic 20.0%
!!! ATTTTTTTCACTCTTCTTAT+TGG + chr4_2:48335587-48335606 None:intergenic 20.0%
!! GTATATCTCCTAAAAATAAA+CGG - chr4_2:48335739-48335758 Msa0603680:intron 20.0%
!!! ACTAAATACCGTTTATTTTT+AGG + chr4_2:48335750-48335769 None:intergenic 20.0%
!! TAAAAATAAACGGTATTTAG+TGG - chr4_2:48335749-48335768 Msa0603680:intron 20.0%
!! GTATATCTCCTAAAAATAAA+CGG - chr4_2:48335739-48335758 Msa0603680:intron 20.0%
!!! ACTAAATACCGTTTATTTTT+AGG + chr4_2:48335750-48335769 None:intergenic 20.0%
!! TAAAAATAAACGGTATTTAG+TGG - chr4_2:48335749-48335768 Msa0603680:intron 20.0%
!!! TCTAAATTCCGTTTATTTTT+AGG + chr4_2:48336124-48336143 None:intergenic 20.0%
!! TAAAAATAAACGGAATTTAG+AGG - chr4_2:48336123-48336142 Msa0603680:intron 20.0%
!!! ATGCTTTTACATTTTTTTGT+AGG + chr4_2:48336288-48336307 None:intergenic 20.0%
!! ATTCATTTGATAGAGTATAT+CGG - chr4_2:48336338-48336357 Msa0603680:CDS 20.0%
!!! GATATATATTCTCTCTTTTT+TGG + chr4_2:48336441-48336460 None:intergenic 20.0%
!! GTAAATTATTTCGTTATTAG+TGG + chr4_2:48336943-48336962 None:intergenic 20.0%
!! TATATAATTAACTCACCAAA+GGG + chr4_2:48337066-48337085 None:intergenic 20.0%
!! ATTCAATTACTAGAAAAAGT+TGG - chr4_2:48337122-48337141 Msa0603680:intron 20.0%
!! AGAATAACGAAAAAAATTAG+AGG + chr4_2:48337203-48337222 None:intergenic 20.0%
!! TACTAATTTAGAAACCTAAA+GGG + chr4_2:48337976-48337995 None:intergenic 20.0%
!! ATACTAATTTAGAAACCTAA+AGG + chr4_2:48337977-48337996 None:intergenic 20.0%
!! AAATATATAGTAAAACGTGA+TGG + chr4_2:48338006-48338025 None:intergenic 20.0%
!! TTTCTTTATCCAATGAATTA+AGG + chr4_2:48338125-48338144 None:intergenic 20.0%
!!! ATAATGTTAGATGAAGTTTT+TGG - chr4_2:48338709-48338728 Msa0603680:intron 20.0%
!! ATGAAACTTACAGTAATAAT+TGG + chr4_2:48338745-48338764 None:intergenic 20.0%
!!! TAATTATGATTATTTGGGAT+TGG - chr4_2:48339335-48339354 Msa0603680:intron 20.0%
!!! TATATAGGTTGATATGTTTT+CGG - chr4_2:48339486-48339505 Msa0603680:intron 20.0%
!! ATTATGATATCTAATACACT+TGG - chr4_2:48339940-48339959 Msa0603680:CDS 20.0%
!!! CAAAGAGGTATCAAAATAAT+GGG - chr4_2:48334062-48334081 Msa0603680:three_prime_UTR 25.0%
!! TATCAAAATAATGGGAACTT+TGG - chr4_2:48334070-48334089 Msa0603680:three_prime_UTR 25.0%
! ACAAAACTATCTAGTTAGTT+AGG - chr4_2:48334411-48334430 Msa0603680:three_prime_UTR 25.0%
!!! GTTTTATTCTCTATAGATGA+AGG + chr4_2:48334517-48334536 None:intergenic 25.0%
! AGTGTTCCATATAATCTATA+TGG - chr4_2:48334555-48334574 Msa0603680:three_prime_UTR 25.0%
!!! TGTCGCTTTAACAAAAATAA+TGG + chr4_2:48334710-48334729 None:intergenic 25.0%
! TATGTCCTTAAATTAAGACA+CGG + chr4_2:48334743-48334762 None:intergenic 25.0%
!! CATTTTTCTTGACAACTTTT+GGG - chr4_2:48335503-48335522 Msa0603680:intron 25.0%
! TATATATGGTTTATAGCATG+AGG + chr4_2:48335651-48335670 None:intergenic 25.0%
!! TCTACTAAAATTGTCTTGTT+TGG + chr4_2:48335677-48335696 None:intergenic 25.0%
!!! TCTACTAAAATCGTTTTGTT+TGG + chr4_2:48336018-48336037 None:intergenic 25.0%
!!! TTTTTGGTCAAGTAATATAG+TGG + chr4_2:48336425-48336444 None:intergenic 25.0%
! GTATATAATTAACTCACCAA+AGG + chr4_2:48337067-48337086 None:intergenic 25.0%
! ATAACGAAAAAAATTAGAGG+CGG + chr4_2:48337200-48337219 None:intergenic 25.0%
! TGTTAGAGTCTTCATAAATT+TGG - chr4_2:48337222-48337241 Msa0603680:CDS 25.0%
! TGTAACCAATAAAAAAACAC+AGG - chr4_2:48337263-48337282 Msa0603680:intron 25.0%
!!! ACAATCCTGTGTTTTTTTAT+TGG + chr4_2:48337271-48337290 None:intergenic 25.0%
!!! TTTTTGCTGTAATAATTGGT+CGG + chr4_2:48337450-48337469 None:intergenic 25.0%
! ACCAATTATTACAGCAAAAA+TGG - chr4_2:48337450-48337469 Msa0603680:intron 25.0%
! CCAATTATTACAGCAAAAAT+GGG - chr4_2:48337451-48337470 Msa0603680:intron 25.0%
!! AGTCGTGATGAAAAATATTT+TGG + chr4_2:48337505-48337524 None:intergenic 25.0%
!! TATTTTTCATCACGACTTTT+AGG - chr4_2:48337508-48337527 Msa0603680:intron 25.0%
! TTAAATTGCAGATACGATAA+CGG - chr4_2:48337544-48337563 Msa0603680:intron 25.0%
!!! CATAACCAGGTTTTAAATAA+AGG + chr4_2:48337618-48337637 None:intergenic 25.0%
! TCCTTGTAAAAACTAATATC+AGG - chr4_2:48337671-48337690 Msa0603680:intron 25.0%
!!! ACCTGATATTAGTTTTTACA+AGG + chr4_2:48337675-48337694 None:intergenic 25.0%
! TGTTATTATTATCATGGATC+GGG + chr4_2:48337861-48337880 None:intergenic 25.0%
!! GTGTTATTATTATCATGGAT+CGG + chr4_2:48337862-48337881 None:intergenic 25.0%
! AATGGCATGACATATAATAA+AGG + chr4_2:48338037-48338056 None:intergenic 25.0%
! TATCCAATGAATTAAGGTAA+TGG + chr4_2:48338119-48338138 None:intergenic 25.0%
! ATTATCAATGTAACACTTTC+TGG - chr4_2:48338170-48338189 Msa0603680:intron 25.0%
! CAGTAATAATTGGAAGTAAT+GGG + chr4_2:48338735-48338754 None:intergenic 25.0%
! ACAGTAATAATTGGAAGTAA+TGG + chr4_2:48338736-48338755 None:intergenic 25.0%
! AAAAGATAGATATAAGCATG+TGG + chr4_2:48338842-48338861 None:intergenic 25.0%
! TTTGCATAATATTATTCAGG+TGG - chr4_2:48338892-48338911 Msa0603680:intron 25.0%
!!! TTCTTCTAACAATTGCTTTT+TGG + chr4_2:48339242-48339261 None:intergenic 25.0%
!!! GAAGTTTCTTAACTGATTTT+TGG - chr4_2:48339259-48339278 Msa0603680:intron 25.0%
! AAATAAGTTTCAACTACTTG+AGG - chr4_2:48339305-48339324 Msa0603680:intron 25.0%
! TCTTTAATCCAAGAATAACA+AGG + chr4_2:48339362-48339381 None:intergenic 25.0%
! AAAGAAAACTAATCGTTGAT+CGG + chr4_2:48339633-48339652 None:intergenic 25.0%
! TGAGATAAAAAACAATTGCA+AGG - chr4_2:48339685-48339704 Msa0603680:intron 25.0%
!!! CCATTATTTTGATACCTCTT+TGG + chr4_2:48334064-48334083 None:intergenic 30.0%
!! CCAAAGAGGTATCAAAATAA+TGG - chr4_2:48334061-48334080 Msa0603680:three_prime_UTR 30.0%
!! ATGAGAGAATATTTTAGGAG+TGG - chr4_2:48334113-48334132 Msa0603680:three_prime_UTR 30.0%
!! GAAAAACAAAAGAAGCATCT+TGG - chr4_2:48334135-48334154 Msa0603680:three_prime_UTR 30.0%
! TATCATTCTCTTTTTCCACT+AGG + chr4_2:48334193-48334212 None:intergenic 30.0%
GAACCATATATATGTGTGTA+CGG + chr4_2:48334385-48334404 None:intergenic 30.0%
ACACATATATATGGTTCATG+AGG - chr4_2:48334388-48334407 Msa0603680:three_prime_UTR 30.0%
! GGTGCACAACTTTTTATTAA+TGG + chr4_2:48334496-48334515 None:intergenic 30.0%
TATGGATCAATGCTTGAAAA+TGG - chr4_2:48334573-48334592 Msa0603680:three_prime_UTR 30.0%
GACCTATGAATTGAACTTAT+CGG - chr4_2:48334769-48334788 Msa0603680:CDS 30.0%
TTTGTTAAGCAAAGTTATGC+GGG + chr4_2:48334888-48334907 None:intergenic 30.0%
! GTTTGTTAAGCAAAGTTATG+CGG + chr4_2:48334889-48334908 None:intergenic 30.0%
CCAAAAGTTGTCAAGAAAAA+TGG + chr4_2:48335505-48335524 None:intergenic 30.0%
!! CCATTTTTCTTGACAACTTT+TGG - chr4_2:48335502-48335521 Msa0603680:intron 30.0%
!! GTCTTGTTTGGTTGTATATA+TGG + chr4_2:48335665-48335684 None:intergenic 30.0%
!!! AATCGTTTTGTTTGGTTGTA+TGG + chr4_2:48335837-48335856 None:intergenic 30.0%
! TTGTTTGGTTGTATGGTTTT+TGG + chr4_2:48336003-48336022 None:intergenic 30.0%
!!! AATCGTTTTGTTTGGTTGTA+TGG + chr4_2:48335837-48335856 None:intergenic 30.0%
ATTTGATAGAGTATATCGGT+AGG - chr4_2:48336342-48336361 Msa0603680:CDS 30.0%
! GTCTAAAGCAATGATTATTC+CGG + chr4_2:48336585-48336604 None:intergenic 30.0%
TACTAAATCCATTCACAGAT+AGG - chr4_2:48336806-48336825 Msa0603680:intron 30.0%
ACACTTTAATGCGAGATTTA+AGG + chr4_2:48336846-48336865 None:intergenic 30.0%
! CATTAAAGTGTCTGAAAGAT+TGG - chr4_2:48336855-48336874 Msa0603680:intron 30.0%
TCGTTCTCATTATTTCATCT+TGG - chr4_2:48337034-48337053 Msa0603680:CDS 30.0%
ACTAGAAAAAGTTGGAACAA+CGG - chr4_2:48337130-48337149 Msa0603680:intron 30.0%
AGAGGCGGAAAAAATAAATT+TGG + chr4_2:48337185-48337204 None:intergenic 30.0%
AAAAAACACAGGATTGTCTT+TGG - chr4_2:48337274-48337293 Msa0603680:intron 30.0%
!! CCCATTTTTGCTGTAATAAT+TGG + chr4_2:48337454-48337473 None:intergenic 30.0%
ACAGAATAACACAAGAAGAA+AGG + chr4_2:48338064-48338083 None:intergenic 30.0%
CATCCATTACCTTAATTCAT+TGG - chr4_2:48338113-48338132 Msa0603680:intron 30.0%
! AACACTTTCTGGTGATTATA+AGG - chr4_2:48338181-48338200 Msa0603680:intron 30.0%
! AAAGAGTTGCTGTTCAAAAT+TGG - chr4_2:48338286-48338305 Msa0603680:intron 30.0%
TTATAAGGTGGAATTGATGA+AGG - chr4_2:48338393-48338412 Msa0603680:intron 30.0%
! AGAAACTTCTTGATGATCAA+AGG - chr4_2:48338503-48338522 Msa0603680:intron 30.0%
! GAAACTTCTTGATGATCAAA+GGG - chr4_2:48338504-48338523 Msa0603680:intron 30.0%
GTTAAAGAATCTGTGGTTTA+TGG - chr4_2:48338526-48338545 Msa0603680:intron 30.0%
!! ACATTAGTTTGTGAAAGGTA+GGG + chr4_2:48338590-48338609 None:intergenic 30.0%
!! AACATTAGTTTGTGAAAGGT+AGG + chr4_2:48338591-48338610 None:intergenic 30.0%
!! TAGGAACATTAGTTTGTGAA+AGG + chr4_2:48338595-48338614 None:intergenic 30.0%
ATTTATTGAGCCAACAATCT+TGG - chr4_2:48338663-48338682 Msa0603680:intron 30.0%
GTATTGAATTCATAAGCTCT+AGG - chr4_2:48338930-48338949 Msa0603680:intron 30.0%
GTTCTTGGTGAAAACATAAA+GGG + chr4_2:48338969-48338988 None:intergenic 30.0%
! ATGATATCTGAAACATCATC+TGG - chr4_2:48339007-48339026 Msa0603680:intron 30.0%
! TTGCCTTGTTAGTTAATTAG+CGG - chr4_2:48339402-48339421 Msa0603680:intron 30.0%
TGAGTTTGCAACTCTTATAT+AGG - chr4_2:48339471-48339490 Msa0603680:intron 30.0%
! AAATAGAGGCTTTGTACATT+AGG + chr4_2:48339605-48339624 None:intergenic 30.0%
! CTTATCCTCAATTTTCTCAA+AGG - chr4_2:48339657-48339676 Msa0603680:intron 30.0%
! AATAATGGGAACTTTGGAGA+TGG - chr4_2:48334076-48334095 Msa0603680:three_prime_UTR 35.0%
TGGAGAGAATCACAACTAAA+AGG - chr4_2:48334155-48334174 Msa0603680:three_prime_UTR 35.0%
GGAGAGAATCACAACTAAAA+GGG - chr4_2:48334156-48334175 Msa0603680:three_prime_UTR 35.0%
TTTCCCTAAATCTTGCATGA+GGG + chr4_2:48334225-48334244 None:intergenic 35.0%
! TAGACAGATTTTCCAATCCA+AGG - chr4_2:48334320-48334339 Msa0603680:three_prime_UTR 35.0%
ATATGTGTGTACGGATCATT+TGG + chr4_2:48334376-48334395 None:intergenic 35.0%
GATCCGTACACACATATATA+TGG - chr4_2:48334379-48334398 Msa0603680:three_prime_UTR 35.0%
! AATGAGCTTTTACTTGAACG+TGG + chr4_2:48334620-48334639 None:intergenic 35.0%
AATTAAGACACGGACTTGAT+TGG + chr4_2:48334733-48334752 None:intergenic 35.0%
CAAGTCCGTGTCTTAATTTA+AGG - chr4_2:48334735-48334754 Msa0603680:CDS 35.0%
GACCGATAAGTTCAATTCAT+AGG + chr4_2:48334774-48334793 None:intergenic 35.0%
CATTTACACGAGAATAGCTA+GGG - chr4_2:48334862-48334881 Msa0603680:CDS 35.0%
AACTTTGCTTAACAAACCCT+TGG - chr4_2:48334892-48334911 Msa0603680:CDS 35.0%
TAGAGATAAACAAAGGCCAA+GGG + chr4_2:48334911-48334930 None:intergenic 35.0%
TTAGAGATAAACAAAGGCCA+AGG + chr4_2:48334912-48334931 None:intergenic 35.0%
GTGCATTAACATGTGTGAAA+TGG + chr4_2:48334975-48334994 None:intergenic 35.0%
! GAGAAGTGTGGTGTTTAAAT+CGG - chr4_2:48335245-48335264 Msa0603680:intron 35.0%
!! AAATTTTATTTGGGGAGACG+AGG + chr4_2:48335462-48335481 None:intergenic 35.0%
CAACCAAACAAAACGATTTC+AGG - chr4_2:48335839-48335858 Msa0603680:CDS 35.0%
!! TCTCCTGAAATCGTTTTGTT+TGG + chr4_2:48335845-48335864 None:intergenic 35.0%
! TTTTTGTAGGATCGCTTCAA+TGG + chr4_2:48336275-48336294 None:intergenic 35.0%
TACCTCTAAACGTGAATAAG+TGG + chr4_2:48336393-48336412 None:intergenic 35.0%
ACTAGATCGAAGTGATCTAA+CGG - chr4_2:48336645-48336664 Msa0603680:CDS 35.0%
ATCGAACAAACACCGTTATA+AGG - chr4_2:48336705-48336724 Msa0603680:CDS 35.0%
!! TTTGCTTTTCCGCCTTATAA+CGG + chr4_2:48336720-48336739 None:intergenic 35.0%
CAACGGCAAAAATTTAGAGA+CGG - chr4_2:48337147-48337166 Msa0603680:intron 35.0%
CTTGGACAATAAAGCCATTA+AGG - chr4_2:48337400-48337419 Msa0603680:intron 35.0%
AAAGCCATTAAGGTTATCCA+AGG - chr4_2:48337410-48337429 Msa0603680:intron 35.0%
AAGCCATTAAGGTTATCCAA+GGG - chr4_2:48337411-48337430 Msa0603680:intron 35.0%
TGGGACAAAATCTTCTTTAC+AGG - chr4_2:48337470-48337489 Msa0603680:intron 35.0%
!!! ACGACTTTTAGGTTTTGAAC+AGG - chr4_2:48337519-48337538 Msa0603680:intron 35.0%
TCAATCACAAATTATGGTCG+CGG - chr4_2:48337591-48337610 Msa0603680:intron 35.0%
TTCATCTTCTTGGGATTTAG+AGG - chr4_2:48337796-48337815 Msa0603680:intron 35.0%
! CGAGCGTGTTATTATTATCA+TGG + chr4_2:48337867-48337886 None:intergenic 35.0%
CACAAGAAGAAAGGTTACAA+TGG + chr4_2:48338055-48338074 None:intergenic 35.0%
! ACTTTCTGGTGATTATAAGG+TGG - chr4_2:48338184-48338203 Msa0603680:intron 35.0%
AGCAATTGACTATGTCATTG+TGG - chr4_2:48338262-48338281 Msa0603680:intron 35.0%
GTGTGGATCAAGAAAATGTT+TGG - chr4_2:48338415-48338434 Msa0603680:intron 35.0%
! CTATAGTGTTGGAATGTTGT+GGG + chr4_2:48338447-48338466 None:intergenic 35.0%
AACATTCCAACACTATAGCA+AGG - chr4_2:48338449-48338468 Msa0603680:intron 35.0%
! AACTATCCTTGCTATAGTGT+TGG + chr4_2:48338458-48338477 None:intergenic 35.0%
TCAAAGGGTTAAAGAATCTG+TGG - chr4_2:48338519-48338538 Msa0603680:intron 35.0%
AAAGAATCTGTGGTTTATGG+TGG - chr4_2:48338529-48338548 Msa0603680:intron 35.0%
ACATTATTGCTGCATCAAGT+GGG + chr4_2:48338696-48338715 None:intergenic 35.0%
AACATTATTGCTGCATCAAG+TGG + chr4_2:48338697-48338716 None:intergenic 35.0%
AGATCATGTGGTAAGTCTAT+AGG + chr4_2:48338780-48338799 None:intergenic 35.0%
AAGCATGTGGTAAAACTAAG+CGG + chr4_2:48338829-48338848 None:intergenic 35.0%
GGTTCTTGGTGAAAACATAA+AGG + chr4_2:48338970-48338989 None:intergenic 35.0%
TCATTCTGCTTTGCAATGTT+TGG + chr4_2:48338991-48339010 None:intergenic 35.0%
TGTCAAAGGAAAATTTCCCA+TGG + chr4_2:48339209-48339228 None:intergenic 35.0%
TTTGGTATAGATATCCACCA+TGG - chr4_2:48339277-48339296 Msa0603680:intron 35.0%
TGAAACTTATTTGCAGTCCA+TGG + chr4_2:48339297-48339316 None:intergenic 35.0%
TTAACTAACAAGGCAAGATC+TGG + chr4_2:48339398-48339417 None:intergenic 35.0%
! TGCCTTGTTAGTTAATTAGC+GGG - chr4_2:48339403-48339422 Msa0603680:intron 35.0%
! CTTCTCCTTTGAGAAAATTG+AGG + chr4_2:48339665-48339684 None:intergenic 35.0%
GTTTCCCTAAATCTTGCATG+AGG + chr4_2:48334226-48334245 None:intergenic 40.0%
! CGTCTCTAAAAGCTTCAAGA+CGG + chr4_2:48334250-48334269 None:intergenic 40.0%
!! TCTTGAAGCTTTTAGAGACG+AGG - chr4_2:48334250-48334269 Msa0603680:three_prime_UTR 40.0%
GCATTTACACGAGAATAGCT+AGG - chr4_2:48334861-48334880 Msa0603680:CDS 40.0%
CACTAAATGACTGAGAAGTG+TGG - chr4_2:48335233-48335252 Msa0603680:intron 40.0%
! TCGGCGCTTCAAAATTTGTT+AGG - chr4_2:48335264-48335283 Msa0603680:intron 40.0%
GGTGGATAGTATGATATTGG+TGG + chr4_2:48335441-48335460 None:intergenic 40.0%
CGAGGTGGATAGTATGATAT+TGG + chr4_2:48335444-48335463 None:intergenic 40.0%
TAGAGTATATCGGTAGGAGT+TGG - chr4_2:48336348-48336367 Msa0603680:CDS 40.0%
AGAGTATATCGGTAGGAGTT+GGG - chr4_2:48336349-48336368 Msa0603680:CDS 40.0%
GTGAATAAGTGGCGAATCTT+AGG + chr4_2:48336382-48336401 None:intergenic 40.0%
GAACAAACACCGTTATAAGG+CGG - chr4_2:48336708-48336727 Msa0603680:CDS 40.0%
CTAACGTTCCTATCTGTGAA+TGG + chr4_2:48336817-48336836 None:intergenic 40.0%
AGATTGGATGTCAAGCAAGA+AGG - chr4_2:48336871-48336890 Msa0603680:intron 40.0%
CTTGAAAGCAATGCTATTGC+AGG + chr4_2:48336985-48337004 None:intergenic 40.0%
AGAAATTGTTCATGAGCCTC+TGG - chr4_2:48337008-48337027 Msa0603680:intron 40.0%
GAAATTGTTCATGAGCCTCT+GGG - chr4_2:48337009-48337028 Msa0603680:intron 40.0%
TCATCTTGGAATTTGCCCTT+TGG - chr4_2:48337048-48337067 Msa0603680:CDS 40.0%
!! TTGTCTTTGGAACCACTGAT+AGG - chr4_2:48337287-48337306 Msa0603680:intron 40.0%
TGCAGCAGTGTTAAAACCTT+CGG - chr4_2:48337328-48337347 Msa0603680:intron 40.0%
!! GGCTTTATTGTCCAAGTAAG+CGG + chr4_2:48337396-48337415 None:intergenic 40.0%
AGCCATTAAGGTTATCCAAG+GGG - chr4_2:48337412-48337431 Msa0603680:intron 40.0%
AATAATTGGTCGGATTCCTG+TGG + chr4_2:48337440-48337459 None:intergenic 40.0%
!! GTGACATTCACGTTTTAACG+TGG - chr4_2:48337566-48337585 Msa0603680:intron 40.0%
GTGGCCTCAATCACAAATTA+TGG - chr4_2:48337585-48337604 Msa0603680:intron 40.0%
! GCGACCATAATTTGTGATTG+AGG + chr4_2:48337592-48337611 None:intergenic 40.0%
! GCGGACCTTTATTTAAAACC+TGG - chr4_2:48337610-48337629 Msa0603680:intron 40.0%
TGGACTCACTTTCATCTTCT+TGG - chr4_2:48337786-48337805 Msa0603680:intron 40.0%
GGACTCACTTTCATCTTCTT+GGG - chr4_2:48337787-48337806 Msa0603680:intron 40.0%
CGGATTCTTGTGGGAAAATA+TGG - chr4_2:48338215-48338234 Msa0603680:intron 40.0%
GGAAAATATGGAACTTGTGC+TGG - chr4_2:48338227-48338246 Msa0603680:intron 40.0%
! GCTATAGTGTTGGAATGTTG+TGG + chr4_2:48338448-48338467 None:intergenic 40.0%
TATTGAGCCAACAATCTTGG+TGG - chr4_2:48338666-48338685 Msa0603680:intron 40.0%
ATTATTGCTGCATCAAGTGG+GGG + chr4_2:48338694-48338713 None:intergenic 40.0%
CATTATTGCTGCATCAAGTG+GGG + chr4_2:48338695-48338714 None:intergenic 40.0%
TGTAACGTCAAGAGATCATG+TGG + chr4_2:48338792-48338811 None:intergenic 40.0%
TATTCAGGTGGAGAAGATTG+AGG - chr4_2:48338904-48338923 Msa0603680:intron 40.0%
GTGAAAACATAAAGGGCAAG+AGG + chr4_2:48338962-48338981 None:intergenic 40.0%
!! GCTTTGCAATGTTTGGTTCT+TGG + chr4_2:48338984-48339003 None:intergenic 40.0%
! TTGGTGACTGAATGTGTCAA+AGG + chr4_2:48339223-48339242 None:intergenic 40.0%
AACTTATTTGCAGTCCATGG+TGG + chr4_2:48339294-48339313 None:intergenic 40.0%
!! GGATTGGTCCTTGTTATTCT+TGG - chr4_2:48339351-48339370 Msa0603680:intron 40.0%
CACCCGCTAATTAACTAACA+AGG + chr4_2:48339408-48339427 None:intergenic 40.0%
!! GTTGATCGGTTCGAAAATAG+AGG + chr4_2:48339619-48339638 None:intergenic 40.0%
GAGCAATCTCACAAATCAGT+TGG + chr4_2:48339717-48339736 None:intergenic 40.0%
AGATTGCTCATGTTCGTTGT+GGG - chr4_2:48339728-48339747 Msa0603680:intron 40.0%
ATGGCCCTCATGCAAGATTT+AGG - chr4_2:48334218-48334237 Msa0603680:three_prime_UTR 45.0%
TGGCCCTCATGCAAGATTTA+GGG - chr4_2:48334219-48334238 Msa0603680:three_prime_UTR 45.0%
!! TTTTATTTGGGGAGACGAGG+TGG + chr4_2:48335459-48335478 None:intergenic 45.0%
GAGTATATCGGTAGGAGTTG+GGG - chr4_2:48336350-48336369 Msa0603680:CDS 45.0%
CGCCACTTATTCACGTTTAG+AGG - chr4_2:48336388-48336407 Msa0603680:intron 45.0%
! TTTTGTTCGTCGTTGTGCAG+TGG + chr4_2:48336749-48336768 None:intergenic 45.0%
AGCAATGCTATTGCAGGTAG+TGG + chr4_2:48336979-48336998 None:intergenic 45.0%
ATAATGAGAACGACACCCAG+AGG + chr4_2:48337027-48337046 None:intergenic 45.0%
TGTTCCTCTCTACTTGCTTC+TGG - chr4_2:48337365-48337384 Msa0603680:intron 45.0%
AATGCCAGAAGCAAGTAGAG+AGG + chr4_2:48337372-48337391 None:intergenic 45.0%
TTCTGGCATTACCGCTTACT+TGG - chr4_2:48337382-48337401 Msa0603680:intron 45.0%
GCCATTAAGGTTATCCAAGG+GGG - chr4_2:48337413-48337432 Msa0603680:intron 45.0%
TCCCCCTTGGATAACCTTAA+TGG + chr4_2:48337417-48337436 None:intergenic 45.0%
GTGACAAGAGACTCATAACC+AGG + chr4_2:48337631-48337650 None:intergenic 45.0%
AATATCAGGTAGTGCACGAG+TGG - chr4_2:48337685-48337704 Msa0603680:intron 45.0%
ATATCAGGTAGTGCACGAGT+GGG - chr4_2:48337686-48337705 Msa0603680:intron 45.0%
AAAGTGAGTCCACAACTGCA+GGG + chr4_2:48337778-48337797 None:intergenic 45.0%
AATAATAACACGCTCGAGCG+TGG - chr4_2:48337871-48337890 Msa0603680:intron 45.0%
! CGCAAGAGCATACACTTCAA+GGG - chr4_2:48337901-48337920 Msa0603680:intron 45.0%
ATTATAAGGTGGCCGTGAAG+CGG - chr4_2:48338195-48338214 Msa0603680:intron 45.0%
AGGTGGAATTGATGAAGGTG+TGG - chr4_2:48338398-48338417 Msa0603680:intron 45.0%
ACATAAAGGGCAAGAGGCTT+AGG + chr4_2:48338956-48338975 None:intergenic 45.0%
GCAGCAGATAGTCTACCATT+TGG - chr4_2:48339153-48339172 Msa0603680:intron 45.0%
GCAGATAGTCTACCATTTGG+TGG - chr4_2:48339156-48339175 Msa0603680:intron 45.0%
! AGTCTACCATTTGGTGGAGT+AGG - chr4_2:48339162-48339181 Msa0603680:intron 45.0%
! AGTGGATTTGGCATGTACCA+TGG - chr4_2:48339189-48339208 Msa0603680:intron 45.0%
GTGGATTTGGCATGTACCAT+GGG - chr4_2:48339190-48339209 Msa0603680:intron 45.0%
GAGATTGCTCATGTTCGTTG+TGG - chr4_2:48339727-48339746 Msa0603680:intron 45.0%
!!! TATATTAAAGTTTTTTTTTT+TGG - chr4_2:48335105-48335124 Msa0603680:CDS 5.0%
!!! AAAGTTAAATAATTATTTTA+AGG - chr4_2:48335942-48335961 Msa0603680:intron 5.0%
!!! TGTTTTATTTTATTTTTATA+AGG - chr4_2:48338378-48338397 Msa0603680:intron 5.0%
!! TAAAATTTCTTATTATATAA+AGG + chr4_2:48339561-48339580 None:intergenic 5.0%
GCAGCTATAGCTCCTATCAG+TGG + chr4_2:48337302-48337321 None:intergenic 50.0%
CTGATAGGAGCTATAGCTGC+TGG - chr4_2:48337302-48337321 Msa0603680:intron 50.0%
GCAAGTAGAGAGGAACATGC+TGG + chr4_2:48337362-48337381 None:intergenic 50.0%
TATCAGGTAGTGCACGAGTG+GGG - chr4_2:48337687-48337706 Msa0603680:intron 50.0%
ACCCCTGTAACACTGGAGTT+GGG - chr4_2:48337743-48337762 Msa0603680:intron 50.0%
ACCCAACTCCAGTGTTACAG+GGG + chr4_2:48337747-48337766 None:intergenic 50.0%
CACCCAACTCCAGTGTTACA+GGG + chr4_2:48337748-48337767 None:intergenic 50.0%
TGGAAAATGCCCTGCAGTTG+TGG - chr4_2:48337766-48337785 Msa0603680:intron 50.0%
GAAAGTGAGTCCACAACTGC+AGG + chr4_2:48337779-48337798 None:intergenic 50.0%
! GCGCAAGAGCATACACTTCA+AGG - chr4_2:48337900-48337919 Msa0603680:intron 50.0%
GCTCTGATGTTGAGCCCTTT+AGG - chr4_2:48337959-48337978 Msa0603680:intron 50.0%
TCCCACAAGAATCCGCTTCA+CGG + chr4_2:48338210-48338229 None:intergenic 50.0%
! CTACCATTTGGTGGAGTAGG+TGG - chr4_2:48339165-48339184 Msa0603680:intron 50.0%
CTTCCACCTACTCCACCAAA+TGG + chr4_2:48339171-48339190 None:intergenic 50.0%
TTTGGTGGAGTAGGTGGAAG+TGG - chr4_2:48339171-48339190 Msa0603680:intron 50.0%
! GGAGTAGGTGGAAGTGGATT+TGG - chr4_2:48339177-48339196 Msa0603680:intron 50.0%
! GGCAAGATCTGGCGTTTTGA+TGG + chr4_2:48339387-48339406 None:intergenic 50.0%
AGGGTTGCGTCGTTTCCTAG+TGG - chr4_2:48334175-48334194 Msa0603680:three_prime_UTR 55.0%
CATGCTGGAGACAACTCCGA+AGG + chr4_2:48337347-48337366 None:intergenic 55.0%
ACTCCAGTGTTACAGGGGTC+AGG + chr4_2:48337742-48337761 None:intergenic 55.0%
GACCCCTGTAACACTGGAGT+TGG - chr4_2:48337742-48337761 Msa0603680:intron 55.0%
CCACCCAACTCCAGTGTTAC+AGG + chr4_2:48337749-48337768 None:intergenic 55.0%
CCTGTAACACTGGAGTTGGG+TGG - chr4_2:48337746-48337765 Msa0603680:intron 55.0%
! GCCGTGAAGCGGATTCTTGT+GGG - chr4_2:48338206-48338225 Msa0603680:intron 55.0%
GGGGGATCCACCAAGATTGT+TGG + chr4_2:48338676-48338695 None:intergenic 55.0%
GGTTATCCAAGGGGGACCAC+AGG - chr4_2:48337421-48337440 Msa0603680:intron 60.0%
GCACCTGACCCCTGTAACAC+TGG - chr4_2:48337736-48337755 Msa0603680:intron 60.0%
! GGCCGTGAAGCGGATTCTTG+TGG - chr4_2:48338205-48338224 Msa0603680:intron 60.0%
CGGATTCCTGTGGTCCCCCT+TGG + chr4_2:48337430-48337449 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 48334056 48340023 48334056 ID=Msa0603680;Name=Msa0603680
chr4_2 mRNA 48334056 48340023 48334056 ID=Msa0603680-mRNA-1;Parent=Msa0603680;Name=Msa0603680-mRNA-1;_AED=0.12;_eAED=0.12;_QI=24|1|1|1|1|1|10|610|490
chr4_2 exon 48334056 48334929 48334056 ID=Msa0603680-mRNA-1:exon:11140;Parent=Msa0603680-mRNA-1
chr4_2 exon 48335019 48335168 48335019 ID=Msa0603680-mRNA-1:exon:11139;Parent=Msa0603680-mRNA-1
chr4_2 exon 48335326 48335416 48335326 ID=Msa0603680-mRNA-1:exon:11138;Parent=Msa0603680-mRNA-1
chr4_2 exon 48335507 48335679 48335507 ID=Msa0603680-mRNA-1:exon:11137;Parent=Msa0603680-mRNA-1
chr4_2 exon 48335772 48335876 48335772 ID=Msa0603680-mRNA-1:exon:11136;Parent=Msa0603680-mRNA-1
chr4_2 exon 48336262 48336386 48336262 ID=Msa0603680-mRNA-1:exon:11135;Parent=Msa0603680-mRNA-1
chr4_2 exon 48336588 48336794 48336588 ID=Msa0603680-mRNA-1:exon:11134;Parent=Msa0603680-mRNA-1
chr4_2 exon 48337010 48337106 48337010 ID=Msa0603680-mRNA-1:exon:11133;Parent=Msa0603680-mRNA-1
chr4_2 exon 48337187 48337255 48337187 ID=Msa0603680-mRNA-1:exon:11132;Parent=Msa0603680-mRNA-1
chr4_2 exon 48339808 48340023 48339808 ID=Msa0603680-mRNA-1:exon:11131;Parent=Msa0603680-mRNA-1
chr4_2 five_prime_UTR 48340000 48340023 48340000 ID=Msa0603680-mRNA-1:five_prime_utr;Parent=Msa0603680-mRNA-1
chr4_2 CDS 48339808 48339999 48339808 ID=Msa0603680-mRNA-1:cds;Parent=Msa0603680-mRNA-1
chr4_2 CDS 48337187 48337255 48337187 ID=Msa0603680-mRNA-1:cds;Parent=Msa0603680-mRNA-1
chr4_2 CDS 48337010 48337106 48337010 ID=Msa0603680-mRNA-1:cds;Parent=Msa0603680-mRNA-1
chr4_2 CDS 48336588 48336794 48336588 ID=Msa0603680-mRNA-1:cds;Parent=Msa0603680-mRNA-1
chr4_2 CDS 48336262 48336386 48336262 ID=Msa0603680-mRNA-1:cds;Parent=Msa0603680-mRNA-1
chr4_2 CDS 48335772 48335876 48335772 ID=Msa0603680-mRNA-1:cds;Parent=Msa0603680-mRNA-1
chr4_2 CDS 48335507 48335679 48335507 ID=Msa0603680-mRNA-1:cds;Parent=Msa0603680-mRNA-1
chr4_2 CDS 48335326 48335416 48335326 ID=Msa0603680-mRNA-1:cds;Parent=Msa0603680-mRNA-1
chr4_2 CDS 48335019 48335168 48335019 ID=Msa0603680-mRNA-1:cds;Parent=Msa0603680-mRNA-1
chr4_2 CDS 48334666 48334929 48334666 ID=Msa0603680-mRNA-1:cds;Parent=Msa0603680-mRNA-1
chr4_2 three_prime_UTR 48334056 48334665 48334056 ID=Msa0603680-mRNA-1:three_prime_utr;Parent=Msa0603680-mRNA-1
Gene Sequence

>Msa0603680

ATGGGAACTTTGGAGATGGATCATCTAAAGAATATGAGAGAATATTTTAGGAGTGGAAAAACAAAAGAAGCATCTTGGAGAGAATCACAACTAAAAGGGTTGCGTCGTTTCCTAGTGGAAAAAGAGAATGATATATTCATGGCCCTCATGCAAGATTTAGGGAAACACCGTCTTGAAGCTTTTAGAGACGAGATAGGAACGTTAGTGAAGACCTTAAATCTCGCATTAAAGTGTCTGAAAGATTGGATGTCAAGCAAGAAGGCTCCACTACCTGCAATAGCATTGCTTTCAAGTGCAGAAATTGTTCATGAGCCTCTGGGTGTCGTTCTCATTATTTCATCTTGGAATTTGCCCTTTGGATTGTCTTTGGAACCACTGATAGGAGCTATAGCTGCTGGAAATGCAGCAGTGTTAAAACCTTCGGAGTTGTCTCCAGCATGTTCCTCTCTACTTGCTTCTGGCATTACCGCTTACTTGGACAATAAAGCCATTAAGGTTATCCAAGGGGGACCACAGGAATCCGACCAATTATTACAGCAAAAATGGGACAAAATCTTCTTTACAGGTAGTGCACGAGTGGGGAGCATTGTGATGTCAGCAGCTGCGAAGCACCTGACCCCTGTAACACTGGAGTTGGGTGGAAAATGCCCTGCAGTTGTGGACTCACTTTCATCTTCTTGGGATTTAGAGGTGGCCGTGAAGCGGATTCTTGTGGGAAAATATGGAACTTGTGCTGGTCAAGCATGCATAGCAATTGACTATGTCATTGTGGAAAAGAGTTGCTGTTCAAAATTGGTGGAATTGATGAAGGTGTGGATCAAGAAAATGTTTGGAGACAACCCACAACATTCCAACACTATAGCAAGGATAGTTAATAAACAACACTTAACTAGATTAAAGAAACTTCTTGATGATCAAAGGGTTAAAGAATCTGTGGTTTATGGTGGCTCAATTGACGAAGAAAACTTATTTATTGAGCCAACAATCTTGGTGGATCCCCCACTTGATGCAGCAATAATGTTAGATGAAGTTTTTGGCCCATTACTTCCAATTATTACTGTGGAGAAGATTGAGGACAGTATTGAATTCATAAGCTCTAGGCCTAAGCCTCTTGCCCTTTATGTTTTCACCAAGAACCAAACATTGCAAAGCAGAATGATATCTGAAACATCATCTGGCAGTGTTACTTTCAATGATGCAATTCTACAATATGCAGCAGATAGTCTACCATTTGGTGGAGTAGGTGGAAGTGGATTTGGCATGTACCATGGGAAATTTTCCTTTGACACATTCAGTCACCAAAAAGCAATTGTTAGAAGAAGTTTCTTAACTGATTTTTGGTATAGATATCCACCATGGACTGCAAATAAGTTTCAACTACTTGAGGTCTCTTATAATTATGATTATTTGGGATTGGTCCTTGTTATTCTTGGATTAAAGAGACCATCAAAACGCCAGATCTTGCCTTGTTAG

Protein sequence

>Msa0603680

MGTLEMDHLKNMREYFRSGKTKEASWRESQLKGLRRFLVEKENDIFMALMQDLGKHRLEAFRDEIGTLVKTLNLALKCLKDWMSSKKAPLPAIALLSSAEIVHEPLGVVLIISSWNLPFGLSLEPLIGAIAAGNAAVLKPSELSPACSSLLASGITAYLDNKAIKVIQGGPQESDQLLQQKWDKIFFTGSARVGSIVMSAAAKHLTPVTLELGGKCPAVVDSLSSSWDLEVAVKRILVGKYGTCAGQACIAIDYVIVEKSCCSKLVELMKVWIKKMFGDNPQHSNTIARIVNKQHLTRLKKLLDDQRVKESVVYGGSIDEENLFIEPTILVDPPLDAAIMLDEVFGPLLPIITVEKIEDSIEFISSRPKPLALYVFTKNQTLQSRMISETSSGSVTFNDAILQYAADSLPFGGVGGSGFGMYHGKFSFDTFSHQKAIVRRSFLTDFWYRYPPWTANKFQLLEVSYNYDYLGLVLVILGLKRPSKRQILPC*