Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807270 | MCH84034.1 | 96.694 | 121 | 4 | 0 | 25 | 145 | 81 | 201 | 8.89e-80 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807270 | sp|C6TG62|CSPL9_SOYBN | 75.652 | 115 | 28 | 0 | 25 | 139 | 80 | 194 | 9.87e-61 | 188 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807270 | A0A392MCN9 | 96.694 | 121 | 4 | 0 | 25 | 145 | 81 | 201 | 4.25e-80 | 244 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0658150 | Msa0807270 | 0.815224 | 1.031588e-51 | -8.615850e-47 |
| Msa0703000 | Msa0807270 | 0.818339 | 2.063737e-52 | -8.615850e-47 |
| Msa0730890 | Msa0807270 | 0.806154 | 9.438730e-50 | -8.615850e-47 |
| Msa0807270 | Msa0812720 | 0.813006 | 3.184382e-51 | -8.615850e-47 |
| Msa0807270 | Msa0853080 | 0.806726 | 7.152212e-50 | -8.615850e-47 |
| Msa0807270 | Msa0866260 | 0.993705 | 1.266066e-201 | -8.615850e-47 |
| Msa0807270 | Msa0866280 | 0.983207 | 4.073274e-157 | -8.615850e-47 |
| Msa0807270 | Msa1111910 | 0.806033 | 1.001056e-49 | -8.615850e-47 |
| Msa0807270 | Msa1273320 | 0.802653 | 5.065854e-49 | -8.615850e-47 |
| Msa0807270 | Msa1290090 | -0.802429 | 5.633604e-49 | -8.615850e-47 |
| Msa0807270 | Msa1339530 | 0.802081 | 6.644368e-49 | -8.615850e-47 |
| Msa0807270 | Msa1362590 | 0.815282 | 1.001076e-51 | -8.615850e-47 |
| Msa0807270 | Msa1384130 | 0.856678 | 2.735392e-62 | -8.615850e-47 |
| Msa0807270 | Msa1387100 | -0.801589 | 8.385827e-49 | -8.615850e-47 |
| Msa0807270 | Msa1395080 | 0.818550 | 1.849046e-52 | -8.615850e-47 |
| Msa0807270 | Msa1425810 | 0.970050 | 4.952974e-131 | -8.615850e-47 |
| Msa0130360 | Msa0807270 | 0.807070 | 6.049669e-50 | -8.615850e-47 |
| Msa0188560 | Msa0807270 | 0.808054 | 3.738492e-50 | -8.615850e-47 |
| Msa0189990 | Msa0807270 | 0.815986 | 6.979739e-52 | -8.615850e-47 |
| Msa0230920 | Msa0807270 | 0.817334 | 3.480090e-52 | -8.615850e-47 |
| Msa0463820 | Msa0807270 | -0.805332 | 1.404749e-49 | -8.615850e-47 |
| Msa0247780 | Msa0807270 | 0.873454 | 1.451747e-67 | -8.615850e-47 |
| Msa0325260 | Msa0807270 | 0.868272 | 7.387782e-66 | -8.615850e-47 |
| Msa0336430 | Msa0807270 | 0.801319 | 9.524584e-49 | -8.615850e-47 |
| Msa0336460 | Msa0807270 | 0.803751 | 3.001874e-49 | -8.615850e-47 |
| Msa0568920 | Msa0807270 | 0.804558 | 2.039613e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807270 | MtrunA17_Chr2g0303151 | 96.694 | 121 | 4 | 0 | 25 | 145 | 81 | 201 | 1.28e-83 | 244 |
| Msa0807270 | MtrunA17_Chr8g0381001 | 74.561 | 114 | 29 | 0 | 25 | 138 | 80 | 193 | 4.72e-51 | 161 |
| Msa0807270 | MtrunA17_Chr4g0021111 | 31.858 | 113 | 70 | 1 | 24 | 136 | 52 | 157 | 8.21e-14 | 64.7 |
| Msa0807270 | MtrunA17_Chr7g0268681 | 33.028 | 109 | 72 | 1 | 25 | 133 | 78 | 185 | 1.13e-13 | 65.1 |
| Msa0807270 | MtrunA17_Chr4g0066721 | 36.559 | 93 | 54 | 2 | 25 | 115 | 88 | 177 | 1.31e-13 | 65.1 |
| Msa0807270 | MtrunA17_Chr7g0217691 | 31.250 | 112 | 74 | 1 | 24 | 132 | 74 | 185 | 6.70e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807270 | AT5G44550.1 | 55.263 | 114 | 51 | 0 | 25 | 138 | 72 | 185 | 2.16e-38 | 129 |
| Msa0807270 | AT4G20390.1 | 54.545 | 110 | 50 | 0 | 25 | 134 | 72 | 181 | 5.66e-28 | 102 |
| Msa0807270 | AT1G14160.1 | 35.185 | 108 | 64 | 3 | 25 | 129 | 98 | 202 | 4.37e-13 | 63.9 |
| Msa0807270 | AT1G03700.1 | 27.434 | 113 | 75 | 2 | 24 | 136 | 53 | 158 | 9.90e-13 | 62.4 |
| Msa0807270 | AT4G03540.1 | 30.526 | 95 | 59 | 2 | 24 | 118 | 53 | 140 | 4.44e-11 | 57.8 |
Find 46 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCCCTGGAGATGTTTCT+TGG | 0.181666 | 5_3:+28077870 | None:intergenic |
| GCCCTTATTGCTTCTTTCAT+TGG | 0.228754 | 5_3:-28076896 | Msa0807270:CDS |
| AAGTCCTTTGTAATCATATT+GGG | 0.274380 | 5_3:+28077196 | None:intergenic |
| GAAGTCCTTTGTAATCATAT+TGG | 0.328703 | 5_3:+28077195 | None:intergenic |
| AGCCAATGAAAGAAGCAATA+AGG | 0.340360 | 5_3:+28076894 | None:intergenic |
| TTTGAAAGCTATTGCAATAG+AGG | 0.418883 | 5_3:-28076926 | Msa0807270:CDS |
| ATGTCAGCATTGGGAAGAAA+TGG | 0.423404 | 5_3:-28076986 | Msa0807270:CDS |
| GAAAGGGATCCATGGGGATC+GGG | 0.424491 | 5_3:-28077852 | Msa0807270:CDS |
| GCCAATGAAAGAAGCAATAA+GGG | 0.431019 | 5_3:+28076895 | None:intergenic |
| TAACTTGGTGATGATTGTAT+TGG | 0.435126 | 5_3:-28077231 | Msa0807270:CDS |
| TTCCTCCAAGAAACATCTCC+AGG | 0.461856 | 5_3:-28077875 | Msa0807270:CDS |
| ATGATTGTATTGGATATGTT+AGG | 0.463140 | 5_3:-28077221 | Msa0807270:CDS |
| ATACAATCATCACCAAGTTA+TGG | 0.469497 | 5_3:+28077234 | None:intergenic |
| GGAGCATGGTTAATGCGATT+AGG | 0.484616 | 5_3:+28076821 | None:intergenic |
| AGCAACATTCATGTCAGCAT+TGG | 0.488005 | 5_3:-28076996 | Msa0807270:CDS |
| ACTATGGCTCTGGCATCAGC+TGG | 0.494373 | 5_3:-28077028 | Msa0807270:CDS |
| GGAAAGGGATCCATGGGGAT+CGG | 0.494403 | 5_3:-28077853 | Msa0807270:CDS |
| GCGATTAGGCTTGAGAAGCT+TGG | 0.494528 | 5_3:+28076835 | None:intergenic |
| GCAACATTCATGTCAGCATT+GGG | 0.495269 | 5_3:-28076995 | Msa0807270:CDS |
| AAATGCTAGTCTCCATAACT+TGG | 0.496794 | 5_3:-28077246 | Msa0807270:CDS |
| CTCCAGGGAAAGGGATCCAT+GGG | 0.497012 | 5_3:-28077859 | Msa0807270:CDS |
| GGTGAAGTTAACTATGGCTC+TGG | 0.500555 | 5_3:-28077038 | Msa0807270:intron |
| TCCCTGGAGATGTTTCTTGG+AGG | 0.509139 | 5_3:+28077873 | None:intergenic |
| ATGTTAATCATATCAAGGAC+TGG | 0.510976 | 5_3:+28076799 | None:intergenic |
| AAGAAACATCTCCAGGGAAA+GGG | 0.511891 | 5_3:-28077868 | Msa0807270:CDS |
| TGGTAATTCACATGCAAGAT+GGG | 0.512674 | 5_3:-28076966 | Msa0807270:CDS |
| TCTCCAGGGAAAGGGATCCA+TGG | 0.517604 | 5_3:-28077860 | Msa0807270:CDS |
| TCCCCATGGATCCCTTTCCC+TGG | 0.521726 | 5_3:+28077857 | None:intergenic |
| ATGGTAATTCACATGCAAGA+TGG | 0.522902 | 5_3:-28076967 | Msa0807270:CDS |
| ATGGAGACTAGCATTTCCAT+TGG | 0.523367 | 5_3:+28077253 | None:intergenic |
| AGGTTCTTTGTGATAGCCAA+TGG | 0.529472 | 5_3:-28077269 | Msa0807270:CDS |
| CAAGAAACATCTCCAGGGAA+AGG | 0.531923 | 5_3:-28077869 | Msa0807270:CDS |
| GCTCTGGCATCAGCTGGAGA+TGG | 0.540036 | 5_3:-28077022 | Msa0807270:CDS |
| CTCTTTCATCCCGATCCCCA+TGG | 0.551810 | 5_3:+28077843 | None:intergenic |
| CATATCAAGGACTGGGAGCA+TGG | 0.559515 | 5_3:+28076807 | None:intergenic |
| TGTTAATCATATCAAGGACT+GGG | 0.560345 | 5_3:+28076800 | None:intergenic |
| AGGCTTGAGAAGCTTGGCAA+TGG | 0.561801 | 5_3:+28076841 | None:intergenic |
| GGATGAAAGAGATGAAGAAG+AGG | 0.577440 | 5_3:-28077831 | Msa0807270:intron |
| CTAAAATTGCAATAAATGCA+AGG | 0.578209 | 5_3:+28077171 | None:intergenic |
| AGCTATTGCAATAGAGGTGG+TGG | 0.598102 | 5_3:-28076920 | Msa0807270:CDS |
| GAAAGCTATTGCAATAGAGG+TGG | 0.619990 | 5_3:-28076923 | Msa0807270:CDS |
| TCACAGTGATAATCAAGAGA+AGG | 0.626568 | 5_3:+28076867 | None:intergenic |
| AGTCCTTTGTAATCATATTG+GGG | 0.628572 | 5_3:+28077197 | None:intergenic |
| TCCTCCAAGAAACATCTCCA+GGG | 0.649476 | 5_3:-28077874 | Msa0807270:CDS |
| GGACCCCAATATGATTACAA+AGG | 0.686673 | 5_3:-28077200 | Msa0807270:CDS |
| TCCAGGGAAAGGGATCCATG+GGG | 0.763415 | 5_3:-28077858 | Msa0807270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTTAATTTTTTTCTT+AGG | - | chr5_3:28077584-28077603 | Msa0807270:intron | 10.0% |
| !!! | AGTTTTTTAATTTTTTTCTT+AGG | - | chr5_3:28077584-28077603 | Msa0807270:intron | 10.0% |
| !!! | TTGATTGACATTTTTTTTTT+GGG | + | chr5_3:28076976-28076995 | None:intergenic | 15.0% |
| !!! | TTTGATTGACATTTTTTTTT+TGG | + | chr5_3:28076977-28076996 | None:intergenic | 15.0% |
| !!! | TTTTTATAGGTAAATATTAG+TGG | + | chr5_3:28077229-28077248 | None:intergenic | 15.0% |
| !!! | TTGATTGACATTTTTTTTTT+GGG | + | chr5_3:28076976-28076995 | None:intergenic | 15.0% |
| !!! | TTTGATTGACATTTTTTTTT+TGG | + | chr5_3:28076977-28076996 | None:intergenic | 15.0% |
| !!! | TTTTTATAGGTAAATATTAG+TGG | + | chr5_3:28077229-28077248 | None:intergenic | 15.0% |
| !!! | TGATTGACATTTTTTTTTTG+GGG | + | chr5_3:28076975-28076994 | None:intergenic | 20.0% |
| !!! | ACACAAAAAAAGTTTTATGT+AGG | - | chr5_3:28077149-28077168 | Msa0807270:intron | 20.0% |
| !!! | AATATTAGTGGTTAATTTGT+CGG | + | chr5_3:28077217-28077236 | None:intergenic | 20.0% |
| !! | TTACCTATAAAAAATGTAAG+AGG | - | chr5_3:28077236-28077255 | Msa0807270:CDS | 20.0% |
| !!! | TTTCCTCTTACATTTTTTAT+AGG | + | chr5_3:28077242-28077261 | None:intergenic | 20.0% |
| !!! | ATTTATTGCAATTTTAGACA+TGG | - | chr5_3:28077526-28077545 | Msa0807270:intron | 20.0% |
| !!! | TGATTGACATTTTTTTTTTG+GGG | + | chr5_3:28076975-28076994 | None:intergenic | 20.0% |
| !!! | ACACAAAAAAAGTTTTATGT+AGG | - | chr5_3:28077149-28077168 | Msa0807270:intron | 20.0% |
| !!! | AATATTAGTGGTTAATTTGT+CGG | + | chr5_3:28077217-28077236 | None:intergenic | 20.0% |
| !! | TTACCTATAAAAAATGTAAG+AGG | - | chr5_3:28077236-28077255 | Msa0807270:CDS | 20.0% |
| !!! | TTTCCTCTTACATTTTTTAT+AGG | + | chr5_3:28077242-28077261 | None:intergenic | 20.0% |
| !!! | ATTTATTGCAATTTTAGACA+TGG | - | chr5_3:28077526-28077545 | Msa0807270:intron | 20.0% |
| !!! | AGAAGAGGTTAAAAAGTATT+TGG | - | chr5_3:28076875-28076894 | Msa0807270:CDS | 25.0% |
| ! | TAAGTAAAAATGAAAGTCTC+TGG | + | chr5_3:28076950-28076969 | None:intergenic | 25.0% |
| ! | AACGAACATAAATAGAAAAG+AGG | + | chr5_3:28077061-28077080 | None:intergenic | 25.0% |
| !!! | CAAAAAAAGTTTTATGTAGG+AGG | - | chr5_3:28077152-28077171 | Msa0807270:intron | 25.0% |
| !!! | ATATTAGTGGTTAATTTGTC+GGG | + | chr5_3:28077216-28077235 | None:intergenic | 25.0% |
| ! | AATTTCATCGCTTAATTCAA+AGG | - | chr5_3:28077294-28077313 | Msa0807270:intron | 25.0% |
| ! | TTACATTAACACATCATTGT+AGG | - | chr5_3:28077392-28077411 | Msa0807270:intron | 25.0% |
| ! | TACATTAACACATCATTGTA+GGG | - | chr5_3:28077393-28077412 | Msa0807270:intron | 25.0% |
| ! | ATGATTGTATTGGATATGTT+AGG | - | chr5_3:28077470-28077489 | Msa0807270:intron | 25.0% |
| ! | AAGTCCTTTGTAATCATATT+GGG | + | chr5_3:28077498-28077517 | None:intergenic | 25.0% |
| ! | CTAAAATTGCAATAAATGCA+AGG | + | chr5_3:28077523-28077542 | None:intergenic | 25.0% |
| !!! | AGAAGAGGTTAAAAAGTATT+TGG | - | chr5_3:28076875-28076894 | Msa0807270:CDS | 25.0% |
| ! | TAAGTAAAAATGAAAGTCTC+TGG | + | chr5_3:28076950-28076969 | None:intergenic | 25.0% |
| ! | AACGAACATAAATAGAAAAG+AGG | + | chr5_3:28077061-28077080 | None:intergenic | 25.0% |
| !!! | CAAAAAAAGTTTTATGTAGG+AGG | - | chr5_3:28077152-28077171 | Msa0807270:intron | 25.0% |
| !!! | ATATTAGTGGTTAATTTGTC+GGG | + | chr5_3:28077216-28077235 | None:intergenic | 25.0% |
| ! | AATTTCATCGCTTAATTCAA+AGG | - | chr5_3:28077294-28077313 | Msa0807270:intron | 25.0% |
| ! | TTACATTAACACATCATTGT+AGG | - | chr5_3:28077392-28077411 | Msa0807270:intron | 25.0% |
| ! | TACATTAACACATCATTGTA+GGG | - | chr5_3:28077393-28077412 | Msa0807270:intron | 25.0% |
| ! | ATGATTGTATTGGATATGTT+AGG | - | chr5_3:28077470-28077489 | Msa0807270:intron | 25.0% |
| ! | AAGTCCTTTGTAATCATATT+GGG | + | chr5_3:28077498-28077517 | None:intergenic | 25.0% |
| ! | CTAAAATTGCAATAAATGCA+AGG | + | chr5_3:28077523-28077542 | None:intergenic | 25.0% |
| TTGAAAACTTACACAAAAGC+TGG | + | chr5_3:28077002-28077021 | None:intergenic | 30.0% | |
| !! | TATTAGTGGTTAATTTGTCG+GGG | + | chr5_3:28077215-28077234 | None:intergenic | 30.0% |
| TGTAAGAGGAAAATAGAGAA+AGG | - | chr5_3:28077250-28077269 | Msa0807270:CDS | 30.0% | |
| ATACAATCATCACCAAGTTA+TGG | + | chr5_3:28077460-28077479 | None:intergenic | 30.0% | |
| !! | TAACTTGGTGATGATTGTAT+TGG | - | chr5_3:28077460-28077479 | Msa0807270:intron | 30.0% |
| AGTCCTTTGTAATCATATTG+GGG | + | chr5_3:28077497-28077516 | None:intergenic | 30.0% | |
| GAAGTCCTTTGTAATCATAT+TGG | + | chr5_3:28077499-28077518 | None:intergenic | 30.0% | |
| !!! | TTTTTGGGTGAAGTTAACTA+TGG | - | chr5_3:28077647-28077666 | Msa0807270:intron | 30.0% |
| TTTGAAAGCTATTGCAATAG+AGG | - | chr5_3:28077765-28077784 | Msa0807270:intron | 30.0% | |
| TTGAAAACTTACACAAAAGC+TGG | + | chr5_3:28077002-28077021 | None:intergenic | 30.0% | |
| !! | TATTAGTGGTTAATTTGTCG+GGG | + | chr5_3:28077215-28077234 | None:intergenic | 30.0% |
| TGTAAGAGGAAAATAGAGAA+AGG | - | chr5_3:28077250-28077269 | Msa0807270:CDS | 30.0% | |
| ATACAATCATCACCAAGTTA+TGG | + | chr5_3:28077460-28077479 | None:intergenic | 30.0% | |
| !! | TAACTTGGTGATGATTGTAT+TGG | - | chr5_3:28077460-28077479 | Msa0807270:intron | 30.0% |
| AGTCCTTTGTAATCATATTG+GGG | + | chr5_3:28077497-28077516 | None:intergenic | 30.0% | |
| GAAGTCCTTTGTAATCATAT+TGG | + | chr5_3:28077499-28077518 | None:intergenic | 30.0% | |
| !!! | TTTTTGGGTGAAGTTAACTA+TGG | - | chr5_3:28077647-28077666 | Msa0807270:intron | 30.0% |
| TTTGAAAGCTATTGCAATAG+AGG | - | chr5_3:28077765-28077784 | Msa0807270:intron | 30.0% | |
| TAGTAGAAGAGGTCGAATTT+CGG | + | chr5_3:28077179-28077198 | None:intergenic | 35.0% | |
| !! | ATTAGTGGTTAATTTGTCGG+GGG | + | chr5_3:28077214-28077233 | None:intergenic | 35.0% |
| ! | AAATGCTAGTCTCCATAACT+TGG | - | chr5_3:28077445-28077464 | Msa0807270:intron | 35.0% |
| ATGGTAATTCACATGCAAGA+TGG | - | chr5_3:28077724-28077743 | Msa0807270:intron | 35.0% | |
| TGGTAATTCACATGCAAGAT+GGG | - | chr5_3:28077725-28077744 | Msa0807270:intron | 35.0% | |
| GCCAATGAAAGAAGCAATAA+GGG | + | chr5_3:28077799-28077818 | None:intergenic | 35.0% | |
| AGCCAATGAAAGAAGCAATA+AGG | + | chr5_3:28077800-28077819 | None:intergenic | 35.0% | |
| TCACAGTGATAATCAAGAGA+AGG | + | chr5_3:28077827-28077846 | None:intergenic | 35.0% | |
| TAGTAGAAGAGGTCGAATTT+CGG | + | chr5_3:28077179-28077198 | None:intergenic | 35.0% | |
| !! | ATTAGTGGTTAATTTGTCGG+GGG | + | chr5_3:28077214-28077233 | None:intergenic | 35.0% |
| ! | AAATGCTAGTCTCCATAACT+TGG | - | chr5_3:28077445-28077464 | Msa0807270:intron | 35.0% |
| ATGGTAATTCACATGCAAGA+TGG | - | chr5_3:28077724-28077743 | Msa0807270:intron | 35.0% | |
| TGGTAATTCACATGCAAGAT+GGG | - | chr5_3:28077725-28077744 | Msa0807270:intron | 35.0% | |
| GCCAATGAAAGAAGCAATAA+GGG | + | chr5_3:28077799-28077818 | None:intergenic | 35.0% | |
| AGCCAATGAAAGAAGCAATA+AGG | + | chr5_3:28077800-28077819 | None:intergenic | 35.0% | |
| TCACAGTGATAATCAAGAGA+AGG | + | chr5_3:28077827-28077846 | None:intergenic | 35.0% | |
| AAGAAACATCTCCAGGGAAA+GGG | - | chr5_3:28076823-28076842 | Msa0807270:CDS | 40.0% | |
| GGATGAAAGAGATGAAGAAG+AGG | - | chr5_3:28076860-28076879 | Msa0807270:CDS | 40.0% | |
| ATACGATTGGACTACTCGTT+CGG | + | chr5_3:28077121-28077140 | None:intergenic | 40.0% | |
| TGTGTCTGAATCGATACGAT+TGG | + | chr5_3:28077134-28077153 | None:intergenic | 40.0% | |
| GAGAGAGTTGTTAGTAGAAG+AGG | + | chr5_3:28077190-28077209 | None:intergenic | 40.0% | |
| ACATCATTGTAGGGTGAAAC+AGG | - | chr5_3:28077402-28077421 | Msa0807270:intron | 40.0% | |
| AGGTTCTTTGTGATAGCCAA+TGG | - | chr5_3:28077422-28077441 | Msa0807270:intron | 40.0% | |
| ATGGAGACTAGCATTTCCAT+TGG | + | chr5_3:28077441-28077460 | None:intergenic | 40.0% | |
| GGACCCCAATATGATTACAA+AGG | - | chr5_3:28077491-28077510 | Msa0807270:intron | 40.0% | |
| AGCAACATTCATGTCAGCAT+TGG | - | chr5_3:28077695-28077714 | Msa0807270:intron | 40.0% | |
| GCAACATTCATGTCAGCATT+GGG | - | chr5_3:28077696-28077715 | Msa0807270:intron | 40.0% | |
| ! | ATGTCAGCATTGGGAAGAAA+TGG | - | chr5_3:28077705-28077724 | Msa0807270:intron | 40.0% |
| GAAAGCTATTGCAATAGAGG+TGG | - | chr5_3:28077768-28077787 | Msa0807270:intron | 40.0% | |
| GCCCTTATTGCTTCTTTCAT+TGG | - | chr5_3:28077795-28077814 | Msa0807270:intron | 40.0% | |
| AAGAAACATCTCCAGGGAAA+GGG | - | chr5_3:28076823-28076842 | Msa0807270:CDS | 40.0% | |
| GGATGAAAGAGATGAAGAAG+AGG | - | chr5_3:28076860-28076879 | Msa0807270:CDS | 40.0% | |
| ATACGATTGGACTACTCGTT+CGG | + | chr5_3:28077121-28077140 | None:intergenic | 40.0% | |
| TGTGTCTGAATCGATACGAT+TGG | + | chr5_3:28077134-28077153 | None:intergenic | 40.0% | |
| GAGAGAGTTGTTAGTAGAAG+AGG | + | chr5_3:28077190-28077209 | None:intergenic | 40.0% | |
| ACATCATTGTAGGGTGAAAC+AGG | - | chr5_3:28077402-28077421 | Msa0807270:intron | 40.0% | |
| AGGTTCTTTGTGATAGCCAA+TGG | - | chr5_3:28077422-28077441 | Msa0807270:intron | 40.0% | |
| ATGGAGACTAGCATTTCCAT+TGG | + | chr5_3:28077441-28077460 | None:intergenic | 40.0% | |
| GGACCCCAATATGATTACAA+AGG | - | chr5_3:28077491-28077510 | Msa0807270:intron | 40.0% | |
| AGCAACATTCATGTCAGCAT+TGG | - | chr5_3:28077695-28077714 | Msa0807270:intron | 40.0% | |
| GCAACATTCATGTCAGCATT+GGG | - | chr5_3:28077696-28077715 | Msa0807270:intron | 40.0% | |
| ! | ATGTCAGCATTGGGAAGAAA+TGG | - | chr5_3:28077705-28077724 | Msa0807270:intron | 40.0% |
| GAAAGCTATTGCAATAGAGG+TGG | - | chr5_3:28077768-28077787 | Msa0807270:intron | 40.0% | |
| GCCCTTATTGCTTCTTTCAT+TGG | - | chr5_3:28077795-28077814 | Msa0807270:intron | 40.0% | |
| TTCCTCCAAGAAACATCTCC+AGG | - | chr5_3:28076816-28076835 | Msa0807270:CDS | 45.0% | |
| TCCTCCAAGAAACATCTCCA+GGG | - | chr5_3:28076817-28076836 | Msa0807270:CDS | 45.0% | |
| CTTTCCCTGGAGATGTTTCT+TGG | + | chr5_3:28076824-28076843 | None:intergenic | 45.0% | |
| CAAGAAACATCTCCAGGGAA+AGG | - | chr5_3:28076822-28076841 | Msa0807270:CDS | 45.0% | |
| !! | TTGGTGATGAAGCAAGCTAG+AGG | - | chr5_3:28076894-28076913 | Msa0807270:CDS | 45.0% |
| ! | TGGTGATGAAGCAAGCTAGA+GGG | - | chr5_3:28076895-28076914 | Msa0807270:CDS | 45.0% |
| AGAAGACGGTGAACAGTAAC+TGG | - | chr5_3:28076918-28076937 | Msa0807270:CDS | 45.0% | |
| TACGATTGGACTACTCGTTC+GGG | + | chr5_3:28077120-28077139 | None:intergenic | 45.0% | |
| GGTGAAGTTAACTATGGCTC+TGG | - | chr5_3:28077653-28077672 | Msa0807270:intron | 45.0% | |
| AGCTATTGCAATAGAGGTGG+TGG | - | chr5_3:28077771-28077790 | Msa0807270:intron | 45.0% | |
| GGAGCATGGTTAATGCGATT+AGG | + | chr5_3:28077873-28077892 | None:intergenic | 45.0% | |
| TTCCTCCAAGAAACATCTCC+AGG | - | chr5_3:28076816-28076835 | Msa0807270:CDS | 45.0% | |
| TCCTCCAAGAAACATCTCCA+GGG | - | chr5_3:28076817-28076836 | Msa0807270:CDS | 45.0% | |
| CTTTCCCTGGAGATGTTTCT+TGG | + | chr5_3:28076824-28076843 | None:intergenic | 45.0% | |
| CAAGAAACATCTCCAGGGAA+AGG | - | chr5_3:28076822-28076841 | Msa0807270:CDS | 45.0% | |
| !! | TTGGTGATGAAGCAAGCTAG+AGG | - | chr5_3:28076894-28076913 | Msa0807270:CDS | 45.0% |
| ! | TGGTGATGAAGCAAGCTAGA+GGG | - | chr5_3:28076895-28076914 | Msa0807270:CDS | 45.0% |
| AGAAGACGGTGAACAGTAAC+TGG | - | chr5_3:28076918-28076937 | Msa0807270:CDS | 45.0% | |
| TACGATTGGACTACTCGTTC+GGG | + | chr5_3:28077120-28077139 | None:intergenic | 45.0% | |
| GGTGAAGTTAACTATGGCTC+TGG | - | chr5_3:28077653-28077672 | Msa0807270:intron | 45.0% | |
| AGCTATTGCAATAGAGGTGG+TGG | - | chr5_3:28077771-28077790 | Msa0807270:intron | 45.0% | |
| GGAGCATGGTTAATGCGATT+AGG | + | chr5_3:28077873-28077892 | None:intergenic | 45.0% | |
| !!! | TTTGATAAATAATATTTTTT+TGG | - | chr5_3:28077631-28077650 | Msa0807270:intron | 5.0% |
| !!! | TTGATAAATAATATTTTTTT+GGG | - | chr5_3:28077632-28077651 | Msa0807270:intron | 5.0% |
| !!! | TTTGATAAATAATATTTTTT+TGG | - | chr5_3:28077631-28077650 | Msa0807270:intron | 5.0% |
| !!! | TTGATAAATAATATTTTTTT+GGG | - | chr5_3:28077632-28077651 | Msa0807270:intron | 5.0% |
| TCCCTGGAGATGTTTCTTGG+AGG | + | chr5_3:28076821-28076840 | None:intergenic | 50.0% | |
| AGCAAGCTAGAGGGAGAAGA+CGG | - | chr5_3:28076904-28076923 | Msa0807270:CDS | 50.0% | |
| ACGATTGGACTACTCGTTCG+GGG | + | chr5_3:28077119-28077138 | None:intergenic | 50.0% | |
| AGGCTTGAGAAGCTTGGCAA+TGG | + | chr5_3:28077853-28077872 | None:intergenic | 50.0% | |
| GCGATTAGGCTTGAGAAGCT+TGG | + | chr5_3:28077859-28077878 | None:intergenic | 50.0% | |
| TCCCTGGAGATGTTTCTTGG+AGG | + | chr5_3:28076821-28076840 | None:intergenic | 50.0% | |
| AGCAAGCTAGAGGGAGAAGA+CGG | - | chr5_3:28076904-28076923 | Msa0807270:CDS | 50.0% | |
| ACGATTGGACTACTCGTTCG+GGG | + | chr5_3:28077119-28077138 | None:intergenic | 50.0% | |
| AGGCTTGAGAAGCTTGGCAA+TGG | + | chr5_3:28077853-28077872 | None:intergenic | 50.0% | |
| GCGATTAGGCTTGAGAAGCT+TGG | + | chr5_3:28077859-28077878 | None:intergenic | 50.0% | |
| TCTCCAGGGAAAGGGATCCA+TGG | - | chr5_3:28076831-28076850 | Msa0807270:CDS | 55.0% | |
| CTCCAGGGAAAGGGATCCAT+GGG | - | chr5_3:28076832-28076851 | Msa0807270:CDS | 55.0% | |
| TCCAGGGAAAGGGATCCATG+GGG | - | chr5_3:28076833-28076852 | Msa0807270:CDS | 55.0% | |
| GGAAAGGGATCCATGGGGAT+CGG | - | chr5_3:28076838-28076857 | Msa0807270:CDS | 55.0% | |
| GAAAGGGATCCATGGGGATC+GGG | - | chr5_3:28076839-28076858 | Msa0807270:CDS | 55.0% | |
| CTCTTTCATCCCGATCCCCA+TGG | + | chr5_3:28076851-28076870 | None:intergenic | 55.0% | |
| CGATTGGACTACTCGTTCGG+GGG | + | chr5_3:28077118-28077137 | None:intergenic | 55.0% | |
| !! | ACTATGGCTCTGGCATCAGC+TGG | - | chr5_3:28077663-28077682 | Msa0807270:intron | 55.0% |
| TCTCCAGGGAAAGGGATCCA+TGG | - | chr5_3:28076831-28076850 | Msa0807270:CDS | 55.0% | |
| CTCCAGGGAAAGGGATCCAT+GGG | - | chr5_3:28076832-28076851 | Msa0807270:CDS | 55.0% | |
| TCCAGGGAAAGGGATCCATG+GGG | - | chr5_3:28076833-28076852 | Msa0807270:CDS | 55.0% | |
| GGAAAGGGATCCATGGGGAT+CGG | - | chr5_3:28076838-28076857 | Msa0807270:CDS | 55.0% | |
| GAAAGGGATCCATGGGGATC+GGG | - | chr5_3:28076839-28076858 | Msa0807270:CDS | 55.0% | |
| CTCTTTCATCCCGATCCCCA+TGG | + | chr5_3:28076851-28076870 | None:intergenic | 55.0% | |
| CGATTGGACTACTCGTTCGG+GGG | + | chr5_3:28077118-28077137 | None:intergenic | 55.0% | |
| !! | ACTATGGCTCTGGCATCAGC+TGG | - | chr5_3:28077663-28077682 | Msa0807270:intron | 55.0% |
| TCCCCATGGATCCCTTTCCC+TGG | + | chr5_3:28076837-28076856 | None:intergenic | 60.0% | |
| GCTCTGGCATCAGCTGGAGA+TGG | - | chr5_3:28077669-28077688 | Msa0807270:intron | 60.0% | |
| TCCCCATGGATCCCTTTCCC+TGG | + | chr5_3:28076837-28076856 | None:intergenic | 60.0% | |
| GCTCTGGCATCAGCTGGAGA+TGG | - | chr5_3:28077669-28077688 | Msa0807270:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 28076811 | 28077902 | 28076811 | ID=Msa0807270;Name=Msa0807270 |
| chr5_3 | mRNA | 28076811 | 28077902 | 28076811 | ID=Msa0807270-mRNA-1;Parent=Msa0807270;Name=Msa0807270-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|0.66|1|1|3|0|145 |
| chr5_3 | exon | 28077832 | 28077902 | 28077832 | ID=Msa0807270-mRNA-1:exon:10009;Parent=Msa0807270-mRNA-1 |
| chr5_3 | exon | 28077166 | 28077289 | 28077166 | ID=Msa0807270-mRNA-1:exon:10008;Parent=Msa0807270-mRNA-1 |
| chr5_3 | exon | 28076811 | 28077053 | 28076811 | ID=Msa0807270-mRNA-1:exon:10007;Parent=Msa0807270-mRNA-1 |
| chr5_3 | CDS | 28077832 | 28077902 | 28077832 | ID=Msa0807270-mRNA-1:cds;Parent=Msa0807270-mRNA-1 |
| chr5_3 | CDS | 28077166 | 28077289 | 28077166 | ID=Msa0807270-mRNA-1:cds;Parent=Msa0807270-mRNA-1 |
| chr5_3 | CDS | 28076811 | 28077053 | 28076811 | ID=Msa0807270-mRNA-1:cds;Parent=Msa0807270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
