AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0230920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0230920 MtrunA17_Chr2g0277131 97.856 886 12 3 1 883 1 882 0.0 1751
Msa0230920 MtrunA17_Chr7g0276651 60.407 836 295 7 62 883 11 824 0.0 985
Msa0230920 MtrunA17_Chr1g0188021 23.766 770 475 20 194 883 111 848 9.12e-50 189
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0230920 AT5G49960.1 72.423 776 196 5 112 883 63 824 0.0 1120
Msa0230920 AT5G49960.3 70.719 584 153 5 112 691 63 632 0.0 808
Msa0230920 AT5G49960.2 70.598 585 154 5 112 692 63 633 0.0 808
Msa0230920 AT5G02940.1 23.032 686 430 17 255 883 162 806 7.29e-48 184
Msa0230920 AT5G43745.1 22.792 702 446 18 238 883 149 810 4.82e-47 181
Msa0230920 AT5G02940.2 22.631 707 430 18 255 883 162 829 3.13e-45 176

Find 235 sgRNAs with CRISPR-Local

Find 475 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAATTTCTTGACAAATTT+TGG 0.025963 2_2:-3126820 None:intergenic
AATATCTTCTCTGGATATTT+AGG 0.059109 2_2:-3123278 None:intergenic
AATTATAATTAGTGAAATTT+TGG 0.103985 2_2:+3126030 Msa0230920:CDS
ATACAAAGTCAACTTCTTTA+AGG 0.121310 2_2:+3125948 Msa0230920:CDS
TCAACTTCTTTAAGGTTATC+TGG 0.148103 2_2:+3125956 Msa0230920:CDS
CTGAAGCACTTTGGCATTCT+TGG 0.155246 2_2:+3121531 Msa0230920:CDS
TCCAAAATTTGTCAAGAAAT+TGG 0.176520 2_2:+3126819 Msa0230920:three_prime_UTR
TAAGCAACTCTCTTCTTTAA+TGG 0.194129 2_2:-3121386 None:intergenic
ACCACCACCAACACTCTTAT+TGG 0.207987 2_2:-3121966 None:intergenic
TTTCTATGATATAATGATTA+GGG 0.234885 2_2:+3126450 Msa0230920:CDS
CTCCGTTTAACTTGCCAAAA+AGG 0.247477 2_2:+3126707 Msa0230920:three_prime_UTR
AGAAGGTTTACAGGAGGTTT+GGG 0.262952 2_2:-3120749 None:intergenic
TTAGCATTGTATGCGGTTAC+TGG 0.270092 2_2:+3121497 Msa0230920:CDS
TGTTTGTTTCGAAAAGAAAA+TGG 0.270822 2_2:+3120472 Msa0230920:exon
TCCAATTCCATTGTTATCAT+TGG 0.279469 2_2:-3120606 None:intergenic
ACTTTCTTTCTTATAGCATT+TGG 0.285380 2_2:+3121470 Msa0230920:CDS
TGAGGAGGAAGAAGGTTTAC+AGG 0.292914 2_2:-3120758 None:intergenic
CTCCGTTCCTTTCACATTCA+AGG 0.294497 2_2:-3126785 None:intergenic
ATATCTTCTCTGGATATTTA+GGG 0.299093 2_2:-3123277 None:intergenic
GTTTCTATGATATAATGATT+AGG 0.302034 2_2:+3126449 Msa0230920:CDS
AAGAAGGTTTACAGGAGGTT+TGG 0.311078 2_2:-3120750 None:intergenic
CCCAATGATAACAATGGAAT+TGG 0.314539 2_2:+3120605 Msa0230920:CDS
CTTATATTTGCCATGATGCT+TGG 0.316969 2_2:+3121641 Msa0230920:CDS
CCTTGGCTGGAGTGACAAAT+TGG 0.326021 2_2:+3121748 Msa0230920:CDS
GTTGTTGTCGGAGCGGGGAC+GGG 0.327297 2_2:-3120783 None:intergenic
TAATACATAATCACTTATTC+TGG 0.330596 2_2:-3126083 None:intergenic
CTGACTCATCTGCAAGAATA+AGG 0.331840 2_2:-3125708 None:intergenic
TAGCTTTGCATAAGGATATA+TGG 0.335862 2_2:-3121429 None:intergenic
AATCAATAATACCTTGAGTT+TGG 0.344241 2_2:-3121057 None:intergenic
GTATTGTAAATAAGCTGAAT+AGG 0.345906 2_2:-3121027 None:intergenic
CATGATGCTTGGGCTTGTTT+CGG 0.347132 2_2:+3121652 Msa0230920:CDS
TTTACAGGAGGTTTGGGAGG+AGG 0.349529 2_2:-3120743 None:intergenic
GATAGAGTGTTGTTGTTGTT+TGG 0.353353 2_2:-3120852 None:intergenic
CTCAAGAAATTAATTATTTG+AGG 0.355978 2_2:-3121335 None:intergenic
TCGGAGCGGGGACGGGGATG+AGG 0.356082 2_2:-3120776 None:intergenic
GTTGTTGCACATGATGTAAT+TGG 0.366075 2_2:+3122514 Msa0230920:CDS
CCAATTCCATTGTTATCATT+GGG 0.370133 2_2:-3120605 None:intergenic
ACAAGAAAGGAGATTGTTAT+AGG 0.370174 2_2:+3126478 Msa0230920:CDS
TTATATTTGCCATGATGCTT+GGG 0.370290 2_2:+3121642 Msa0230920:CDS
ACAGGAGGTTTGGGAGGAGG+AGG 0.371831 2_2:-3120740 None:intergenic
ATGACCTCTGGCAGTGGGCC+TGG 0.374256 2_2:-3122973 None:intergenic
TCCATTGTTATCATTGGGAT+TGG 0.382263 2_2:-3120600 None:intergenic
CTGAAGCTTGCTGCATTTCG+CGG 0.383020 2_2:-3126000 None:intergenic
TTGTTGTCGGAGCGGGGACG+GGG 0.387191 2_2:-3120782 None:intergenic
GTAGCAGAGGATAGCACATT+TGG 0.391014 2_2:+3126935 Msa0230920:three_prime_UTR
TTCTTTCTTATAGCATTTGG+TGG 0.392754 2_2:+3121473 Msa0230920:CDS
AAAGCTCGAATTCGATTTCA+TGG 0.392854 2_2:+3122042 Msa0230920:CDS
GGAGGTTTGGGAGGAGGAGG+AGG 0.393160 2_2:-3120737 None:intergenic
CAGATATGGGAGGACATTCT+AGG 0.399782 2_2:+3122739 Msa0230920:intron
TATTGTAAATAAGCTGAATA+GGG 0.401722 2_2:-3121026 None:intergenic
AATCTTTCGTAAATAGATAT+AGG 0.403238 2_2:+3126893 Msa0230920:three_prime_UTR
CCACAAAACAATATCTTCTC+TGG 0.406015 2_2:-3123287 None:intergenic
GCTTGTTTCGGATGCTATAT+CGG 0.406162 2_2:+3121664 Msa0230920:CDS
GAGCGGGGACGGGGATGAGG+AGG 0.406620 2_2:-3120773 None:intergenic
ACCACGGCAATACCTTCTTT+AGG 0.407676 2_2:-3122111 None:intergenic
TGGAACTACCCTTCTTTCCT+TGG 0.409640 2_2:+3120680 Msa0230920:CDS
TGGCCCCTGGTTCAGAACTC+TGG 0.410692 2_2:+3125173 Msa0230920:CDS
AGAGTTGTTCTTAGCTTAGC+TGG 0.415399 2_2:+3122394 Msa0230920:CDS
GTACTATGTACTGCGTGTGC+TGG 0.416035 2_2:-3120414 None:intergenic
GGAAAAGGAGGAAATGGAAA+TGG 0.419814 2_2:+3122012 Msa0230920:CDS
AAAAGAAGATCATCCAGTTC+AGG 0.420879 2_2:-3122796 None:intergenic
TGTTGTTGTCGGAGCGGGGA+CGG 0.422947 2_2:-3120784 None:intergenic
TACCCTTCTTTCCTTGGCAT+TGG 0.429924 2_2:+3120686 Msa0230920:CDS
TTAGAAGCATTCTTGGCCCC+TGG 0.430654 2_2:+3125160 Msa0230920:CDS
CTCAGAACATAATTATCATC+TGG 0.433266 2_2:-3122901 None:intergenic
AGAAAAGGAAAAGGAGGAAA+TGG 0.437214 2_2:+3122006 Msa0230920:CDS
CCATTGTTATCATTGGGATT+GGG 0.438475 2_2:-3120599 None:intergenic
CAACTTCTTTAAGGTTATCT+GGG 0.440114 2_2:+3125957 Msa0230920:CDS
AGAAAGATGACCTCTGGCAG+TGG 0.445575 2_2:-3122979 None:intergenic
TCTGCAGCCTGGCCTTGCAC+AGG 0.447407 2_2:+3122558 Msa0230920:CDS
CTCAAATAATTAATTTCTTG+AGG 0.448844 2_2:+3121336 Msa0230920:CDS
ATGGAGGAAGAGGAAGGTGG+TGG 0.451779 2_2:-3120827 None:intergenic
TTTAGGTCAGCAAGTATAAG+TGG 0.454048 2_2:-3122094 None:intergenic
TATTGTGGTGCTTGCAGAAA+AGG 0.454979 2_2:+3121991 Msa0230920:CDS
TGCAATACCGTGTGGAGTTA+AGG 0.457759 2_2:+3122846 Msa0230920:CDS
GTTCAATGAAGTTCCTGAAA+AGG 0.458434 2_2:+3125198 Msa0230920:CDS
TGCGGACGAAAATGCAGATC+AGG 0.458571 2_2:+3122253 Msa0230920:CDS
AGGTTTACAGGAGGTTTGGG+AGG 0.459490 2_2:-3120746 None:intergenic
TCTGCTCATTCGTGATATAC+AGG 0.460932 2_2:+3125777 Msa0230920:CDS
AAGGTTGATTCACTTAGAAA+AGG 0.461974 2_2:+3121689 Msa0230920:CDS
GTGTTGTTGTTGTTTGGTGA+TGG 0.462114 2_2:-3120846 None:intergenic
TGCCATGCTAACCAGCTCAT+TGG 0.468077 2_2:-3126107 None:intergenic
ATTCAGTGTGCTCTGCAGCC+TGG 0.470047 2_2:+3122547 Msa0230920:CDS
CTGGGTTCTCTCACAACTCA+TGG 0.470879 2_2:+3125975 Msa0230920:CDS
TTGAGACAGAGACGATTCTC+TGG 0.472906 2_2:-3121601 None:intergenic
GTCTTTGTCTTCTTCAAAGG+TGG 0.473189 2_2:-3120539 None:intergenic
GGTTGATAATAGCACGCTCT+TGG 0.476030 2_2:-3126516 None:intergenic
CATCATGAGGACAAAACATA+AGG 0.478813 2_2:-3126639 None:intergenic
TCAAATAAATAGAACTCTGC+TGG 0.479224 2_2:-3126412 None:intergenic
TCCACCAACAAGTTTCACTA+AGG 0.479326 2_2:-3122476 None:intergenic
AGTGTCTTTGTCTTCTTCAA+AGG 0.479615 2_2:-3120542 None:intergenic
TGTTGGTGGTGGTGTTATTG+TGG 0.482644 2_2:+3121976 Msa0230920:CDS
AATGATAACAATGGAATTGG+AGG 0.485114 2_2:+3120608 Msa0230920:CDS
ACTCCACACGGTATTGCATC+AGG 0.485239 2_2:-3122841 None:intergenic
GGGAGGGAAATGCTGTCATT+AGG 0.491865 2_2:+3125290 Msa0230920:CDS
TGAGGAATTATTTGCGGAGG+AGG 0.492037 2_2:+3126171 Msa0230920:CDS
GAAGTGTACTTTGTTGATGT+TGG 0.495192 2_2:-3120377 None:intergenic
ATAACTAACAAGATAGAAGA+TGG 0.496167 2_2:-3120882 None:intergenic
TAGCACGCTCTTGGTTGGCC+AGG 0.499437 2_2:-3126507 None:intergenic
CTGCCAATGCCAAGGAAAGA+AGG 0.501340 2_2:-3120689 None:intergenic
AAAGAAGAGAGTTGCTTACA+TGG 0.501537 2_2:+3121391 Msa0230920:CDS
AGAAACCATGTACTCATCCT+TGG 0.502400 2_2:+3121731 Msa0230920:CDS
TGGTGGAAGAAGTGAGGAGG+TGG 0.504581 2_2:-3120810 None:intergenic
TGTTCTTGAGGAATTATTTG+CGG 0.504667 2_2:+3126165 Msa0230920:CDS
AGATATTTGTACAATACAAA+AGG 0.505733 2_2:-3121302 None:intergenic
TACTATGTACTGCGTGTGCT+GGG 0.507978 2_2:-3120413 None:intergenic
GAACATAAAGCTTGTCCACC+GGG 0.509140 2_2:+3125270 Msa0230920:CDS
TAATGACAGCATTTCCCTCC+CGG 0.510963 2_2:-3125288 None:intergenic
AGTACATAGTACTATAAAAG+AGG 0.512482 2_2:+3120425 Msa0230920:five_prime_UTR
GAAGACTCCTTGAATGTGAA+AGG 0.514905 2_2:+3126778 Msa0230920:three_prime_UTR
TTTCAAGCTTACAGAATCAA+AGG 0.516141 2_2:-3125341 None:intergenic
CATGCTGAAACAGAAGGAAC+CGG 0.517105 2_2:+3121578 Msa0230920:CDS
GATAATAGCACGCTCTTGGT+TGG 0.517883 2_2:-3126512 None:intergenic
CATTTGGAAACTTTGAACTC+AGG 0.518955 2_2:+3126951 Msa0230920:three_prime_UTR
CAAGTTAAACGGAGAGGGAA+AGG 0.519281 2_2:-3126698 None:intergenic
GACAGAGACGATTCTCTGGC+CGG 0.519822 2_2:-3121597 None:intergenic
GGTGTAAAGGAGGGCTTAAG+AGG 0.521084 2_2:+3122415 Msa0230920:CDS
TTGTTTGGTGATGGAGGAAG+AGG 0.521599 2_2:-3120837 None:intergenic
GGTTAGCATGGCACTAGCTA+TGG 0.522446 2_2:+3126117 Msa0230920:CDS
GTCTCTGTCTCAATTAGTGC+GGG 0.527792 2_2:+3121611 Msa0230920:CDS
AGTGCAAGTAGCTTTGCATA+AGG 0.528370 2_2:-3121437 None:intergenic
TCACTAAGGGTTCATTGTCA+AGG 0.529087 2_2:-3122462 None:intergenic
ACCATGTACTCATCCTTGGC+TGG 0.529647 2_2:+3121735 Msa0230920:CDS
GGAAGGTGGTGGAAGAAGTG+AGG 0.529735 2_2:-3120816 None:intergenic
TCTTAGCTTAGCTGGTGTAA+AGG 0.530755 2_2:+3122402 Msa0230920:CDS
CTTAAGAGGGCATGTTGTTG+TGG 0.531530 2_2:+3122429 Msa0230920:CDS
GATTAGGGGTCGTACAAGAA+AGG 0.535337 2_2:+3126465 Msa0230920:CDS
TTTGCAGGTTTCAGTTTCAA+AGG 0.535429 2_2:+3122208 Msa0230920:intron
ATAATAACCTGTGCAAGGCC+AGG 0.537231 2_2:-3122565 None:intergenic
AAGCTCGAATTCGATTTCAT+GGG 0.539520 2_2:+3122043 Msa0230920:CDS
AAGAAGTTGACTTTGTATCT+CGG 0.540652 2_2:-3125943 None:intergenic
AAGTTAAACGGAGAGGGAAA+GGG 0.540726 2_2:-3126697 None:intergenic
CCCAATCCCAATGATAACAA+TGG 0.542728 2_2:+3120599 Msa0230920:CDS
GTTGACTTTGTATCTCGGTA+TGG 0.542760 2_2:-3125938 None:intergenic
TTATGTATTATCCAATGAGC+TGG 0.542940 2_2:+3126096 Msa0230920:CDS
ATCAACAAAGTACACTTCAT+CGG 0.543677 2_2:+3120382 Msa0230920:five_prime_UTR
ATCCAATGAGCTGGTTAGCA+TGG 0.544583 2_2:+3126105 Msa0230920:CDS
CGAAACAAGCCCAAGCATCA+TGG 0.544799 2_2:-3121651 None:intergenic
TTCGGATGCTATATCGGAGA+AGG 0.545084 2_2:+3121670 Msa0230920:CDS
GGAGTTAAGGTTGCTGCAGA+TGG 0.546450 2_2:+3122859 Msa0230920:CDS
GCACCTCGAGAGTCTTCCAT+TGG 0.547151 2_2:+3125315 Msa0230920:CDS
GATGATGACACTTATGCTCC+AGG 0.548929 2_2:+3122955 Msa0230920:CDS
GCAAATCAACCGTGTTCTTG+AGG 0.553682 2_2:+3126153 Msa0230920:CDS
CCAATTTGTCACTCCAGCCA+AGG 0.555174 2_2:-3121748 None:intergenic
GACGGGGATGAGGAGGAAGA+AGG 0.555736 2_2:-3120766 None:intergenic
TTGTTGTTGTTTGGTGATGG+AGG 0.556562 2_2:-3120843 None:intergenic
TCCAGCCAAGGATGAGTACA+TGG 0.556904 2_2:-3121736 None:intergenic
AGCTTAGCTGGTGTAAAGGA+GGG 0.557700 2_2:+3122406 Msa0230920:CDS
AGAGAGAAGAAACTTGCTGC+TGG 0.559189 2_2:+3125223 Msa0230920:CDS
TGGACTTATGTAGCTGACGC+AGG 0.560225 2_2:+3121551 Msa0230920:CDS
TTGTTATCATTGGGATTGGG+AGG 0.560797 2_2:-3120596 None:intergenic
TTTGGCAAGTTAAACGGAGA+GGG 0.562182 2_2:-3126703 None:intergenic
GAACCCTTAGTGAAACTTGT+TGG 0.562552 2_2:+3122472 Msa0230920:CDS
TGCTCCAGGCCCACTGCCAG+AGG 0.562564 2_2:+3122969 Msa0230920:CDS
TAAATAGATATAGGCGACTA+GGG 0.563423 2_2:+3126902 Msa0230920:three_prime_UTR
GCAATAGCCAATAAGAGTGT+TGG 0.565769 2_2:+3121959 Msa0230920:CDS
GTAGCATGGCTGAAGCACTT+TGG 0.566874 2_2:+3121522 Msa0230920:CDS
GGAGGAAGAAGGTTTACAGG+AGG 0.567299 2_2:-3120755 None:intergenic
TAGCTTAGCTGGTGTAAAGG+AGG 0.568499 2_2:+3122405 Msa0230920:CDS
TTTGAATAATAACCTGTGCA+AGG 0.569894 2_2:-3122570 None:intergenic
AGCATAAGTGTCATCATCCT+CGG 0.571380 2_2:-3122950 None:intergenic
TTTCTTCTGTCATTCACCTG+AGG 0.571440 2_2:-3126596 None:intergenic
TGGACATCATAGTGTAGTGT+AGG 0.571759 2_2:-3126673 None:intergenic
TCAGGTGAATGACAGAAGAA+AGG 0.572459 2_2:+3126598 Msa0230920:exon
CATAGAAACAGAGCTCCTCC+TGG 0.574441 2_2:-3126435 None:intergenic
CGTCTCTGTCTCAATTAGTG+CGG 0.576293 2_2:+3121610 Msa0230920:CDS
AACATCCAGAGTTCTGAACC+AGG 0.577266 2_2:-3125178 None:intergenic
TGCGGTTACTGGCGGTAGCA+TGG 0.578720 2_2:+3121508 Msa0230920:CDS
CCACCAACAAGTTTCACTAA+GGG 0.579441 2_2:-3122475 None:intergenic
ATAGCCAATAAGAGTGTTGG+TGG 0.580251 2_2:+3121962 Msa0230920:CDS
TATACTTGCTGACCTAAAGA+AGG 0.580516 2_2:+3122099 Msa0230920:CDS
AGAGTTCTATTTATTTGACC+AGG 0.581048 2_2:+3126417 Msa0230920:CDS
TATCTTCTCTGGATATTTAG+GGG 0.582060 2_2:-3123276 None:intergenic
ACAGAATCAAAGGTCTCCAA+TGG 0.582556 2_2:-3125331 None:intergenic
GGTGCTTGCAGAAAAGGAAA+AGG 0.582960 2_2:+3121997 Msa0230920:CDS
CTGATTTCTCAGAACAACAA+TGG 0.584280 2_2:+3120660 Msa0230920:CDS
CCCTTAGTGAAACTTGTTGG+TGG 0.584889 2_2:+3122475 Msa0230920:CDS
GTAAATAGATATAGGCGACT+AGG 0.585826 2_2:+3126901 Msa0230920:three_prime_UTR
AATGAGCAGAAGAGTAGCAA+GGG 0.586121 2_2:-3125764 None:intergenic
GATTGTTATAGGCTATCGCC+TGG 0.588095 2_2:+3126489 Msa0230920:CDS
ATAGTTTGTATAGGTACGCA+AGG 0.589814 2_2:+3123229 Msa0230920:intron
GATAATTATGTTCTGAGAGA+TGG 0.589999 2_2:+3122907 Msa0230920:CDS
AGAACATAAAGCTTGTCCAC+CGG 0.590018 2_2:+3125269 Msa0230920:CDS
GGAAATCATGCTGAAACAGA+AGG 0.590406 2_2:+3121572 Msa0230920:CDS
ATACAAACTTGCCAAACTCA+AGG 0.590597 2_2:+3121046 Msa0230920:CDS
ATCTTCTCTGGATATTTAGG+GGG 0.591558 2_2:-3123275 None:intergenic
TAACTAACAAGATAGAAGAT+GGG 0.593725 2_2:-3120881 None:intergenic
TTAAGGTTGCTGCAGATGGT+GGG 0.594100 2_2:+3122863 Msa0230920:CDS
AGGTGGTGGAAGAAGTGAGG+AGG 0.598041 2_2:-3120813 None:intergenic
GTTAAGGTTGCTGCAGATGG+TGG 0.598502 2_2:+3122862 Msa0230920:CDS
GCCAATAAGAGTGTTGGTGG+TGG 0.599916 2_2:+3121965 Msa0230920:CDS
TGGAGGTGCTGCCAATGCCA+AGG 0.600631 2_2:-3120697 None:intergenic
CTCCTTGAATGTGAAAGGAA+CGG 0.602060 2_2:+3126783 Msa0230920:three_prime_UTR
GGGACAAGTTCAAGTAGCAG+AGG 0.602336 2_2:+3126922 Msa0230920:three_prime_UTR
TTCTCTTGGCCAGATATGGG+AGG 0.602546 2_2:+3122729 Msa0230920:intron
GAAAGATGACCTCTGGCAGT+GGG 0.604023 2_2:-3122978 None:intergenic
GTTCTATTTATTTGACCAGG+AGG 0.607329 2_2:+3126420 Msa0230920:CDS
CATCATCCTCGGCTATGACA+AGG 0.607741 2_2:-3122939 None:intergenic
TACGCAAGGGCTATTTCCCT+AGG 0.609591 2_2:+3123243 Msa0230920:CDS
TCTGTCTCAATTAGTGCGGG+TGG 0.610747 2_2:+3121614 Msa0230920:CDS
GAAACTCTGAGATTGAGAGA+AGG 0.611019 2_2:-3120566 None:intergenic
AACAAGATAGAAGATGGGAG+AGG 0.611969 2_2:-3120876 None:intergenic
ACATCTGTAATATGTAGAAG+TGG 0.612683 2_2:+3122067 Msa0230920:CDS
AGCTCGAATTCGATTTCATG+GGG 0.614516 2_2:+3122044 Msa0230920:CDS
TTCTATGATATAATGATTAG+GGG 0.616535 2_2:+3126451 Msa0230920:CDS
ATAAAGCTTGTCCACCGGGA+GGG 0.622822 2_2:+3125274 Msa0230920:CDS
TGATCATGTCATCAATGTCA+CGG 0.624195 2_2:-3123316 None:intergenic
TGACATTGATGACATGATCA+TGG 0.624426 2_2:+3123319 Msa0230920:CDS
GAATGAGCAGAAGAGTAGCA+AGG 0.627455 2_2:-3125765 None:intergenic
TATTCTTGCAGATGAGTCAG+TGG 0.627905 2_2:+3125711 Msa0230920:CDS
TGCCAATGCCAAGGAAAGAA+GGG 0.629280 2_2:-3120688 None:intergenic
TTGGTGATGGAGGAAGAGGA+AGG 0.634563 2_2:-3120833 None:intergenic
TGGTGGTTTAGCATTGTATG+CGG 0.643522 2_2:+3121490 Msa0230920:CDS
GCATTGTATGCGGTTACTGG+CGG 0.645593 2_2:+3121500 Msa0230920:CDS
GTGATGGAGGAAGAGGAAGG+TGG 0.646307 2_2:-3120830 None:intergenic
CGAAGTCCTTGTCATAGCCG+AGG 0.647783 2_2:+3122933 Msa0230920:CDS
GCTTGCAGAAAAGGAAAAGG+AGG 0.649760 2_2:+3122000 Msa0230920:CDS
CATCCAGAGTTCTGAACCAG+GGG 0.651282 2_2:-3125176 None:intergenic
TCTTGCAGATGAGTCAGTGG+AGG 0.653454 2_2:+3125714 Msa0230920:CDS
AGGGAAATGCTGTCATTAGG+CGG 0.655221 2_2:+3125293 Msa0230920:CDS
CAAATAATTCCTCAAGAACA+CGG 0.655970 2_2:-3126162 None:intergenic
GTGTAAAGGAGGGCTTAAGA+GGG 0.656066 2_2:+3122416 Msa0230920:CDS
TCTTGAGGAATTATTTGCGG+AGG 0.658307 2_2:+3126168 Msa0230920:CDS
TTTCCTGATGCAATACCGTG+TGG 0.665352 2_2:+3122838 Msa0230920:CDS
TAGTTTGTATAGGTACGCAA+GGG 0.668580 2_2:+3123230 Msa0230920:intron
GAGGAGAACAGAAAGTAACA+AGG 0.670229 2_2:+3121355 Msa0230920:CDS
TCTCCAATGGAAGACTCTCG+AGG 0.672676 2_2:-3125318 None:intergenic
CATAAAGCTTGTCCACCGGG+AGG 0.679617 2_2:+3125273 Msa0230920:CDS
ACATCCAGAGTTCTGAACCA+GGG 0.682226 2_2:-3125177 None:intergenic
TAAACGGAGAGGGAAAGGGA+TGG 0.686123 2_2:-3126693 None:intergenic
GCAGCAACCTTAACTCCACA+CGG 0.688231 2_2:-3122853 None:intergenic
TGACAGCATTTCCCTCCCGG+TGG 0.690646 2_2:-3125285 None:intergenic
GGCATGCATGAATCATCATG+AGG 0.704112 2_2:-3126652 None:intergenic
GATATGAAACTTCAACTCTG+TGG 0.711737 2_2:+3121161 Msa0230920:CDS
GAGAACAGAAAGTAACAAGG+AGG 0.716342 2_2:+3121358 Msa0230920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAAAATAAACTTAATAAA+GGG - chr2_2:3120933-3120952 None:intergenic 10.0%
!! TATGAAAATAAACTTAATAA+AGG - chr2_2:3120934-3120953 None:intergenic 10.0%
!!! AATTATAATTAGTGAAATTT+TGG + chr2_2:3126030-3126049 Msa0230920:CDS 10.0%
!!! TTTTATCAATTCAATTTCTT+TGG + chr2_2:3121132-3121151 Msa0230920:intron 15.0%
!! CAAATTATTCAAACATTAAA+TGG - chr2_2:3123032-3123051 None:intergenic 15.0%
!! CATTTAATGTTTGAATAATT+TGG + chr2_2:3123030-3123049 Msa0230920:intron 15.0%
!! TGATTATCATTATCAATTTA+TGG + chr2_2:3123932-3123951 Msa0230920:intron 15.0%
!!! TTTTTTTCAAATTTATCCAA+AGG + chr2_2:3124545-3124564 Msa0230920:intron 15.0%
!! TTAACAAGAATAATTAGAAT+TGG + chr2_2:3124631-3124650 Msa0230920:intron 15.0%
!! GTTAAAGAACATAAAATATA+AGG - chr2_2:3125048-3125067 None:intergenic 15.0%
!! TACAAAAAACAAAAAAAAAG+AGG - chr2_2:3125905-3125924 None:intergenic 15.0%
!!! AGGTTTTTGTTTATTTTATA+TGG + chr2_2:3126309-3126328 Msa0230920:intron 15.0%
!!! TTGTTTATTTTATATGGTTT+TGG + chr2_2:3126315-3126334 Msa0230920:intron 15.0%
!! ATCAAAATGACATATAATAT+TGG + chr2_2:3126346-3126365 Msa0230920:intron 15.0%
!! TTTCTATGATATAATGATTA+GGG + chr2_2:3126450-3126469 Msa0230920:CDS 15.0%
!! TATTGTAAATAAGCTGAATA+GGG - chr2_2:3121029-3121048 None:intergenic 20.0%
!! AGATATTTGTACAATACAAA+AGG - chr2_2:3121305-3121324 None:intergenic 20.0%
!! CTCAAGAAATTAATTATTTG+AGG - chr2_2:3121338-3121357 None:intergenic 20.0%
!! CTCAAATAATTAATTTCTTG+AGG + chr2_2:3121336-3121355 Msa0230920:CDS 20.0%
!! TGAATTAGAATTTGATGTTT+AGG + chr2_2:3121817-3121836 Msa0230920:intron 20.0%
!! TTTGTTCTTTATTCATAGAA+AGG + chr2_2:3122136-3122155 Msa0230920:intron 20.0%
!! AAAAAATGAACAAACAAACA+CGG - chr2_2:3122707-3122726 None:intergenic 20.0%
!!! TGTTCATTTTTTTTTTCTCT+TGG + chr2_2:3122715-3122734 Msa0230920:intron 20.0%
!!! TAATAGTGTATAGTTTGTAT+AGG + chr2_2:3123220-3123239 Msa0230920:intron 20.0%
!! CAATAATGTAAGGATATTTA+AGG - chr2_2:3123379-3123398 None:intergenic 20.0%
!!! CTATTTTATGTTTCTTGAAA+GGG - chr2_2:3123442-3123461 None:intergenic 20.0%
!! AAATCTACTAAATAATGAGT+AGG + chr2_2:3124072-3124091 Msa0230920:intron 20.0%
!! CAAAATCTGTATTAATCAAT+TGG + chr2_2:3124200-3124219 Msa0230920:intron 20.0%
!!! TTTCTTCTCTGTTTTTTTTT+AGG + chr2_2:3124433-3124452 Msa0230920:intron 20.0%
!!! TTCTTCTCTGTTTTTTTTTA+GGG + chr2_2:3124434-3124453 Msa0230920:intron 20.0%
!! AAAAAAAATGAAAACACTCA+TGG - chr2_2:3124530-3124549 None:intergenic 20.0%
!! TTGCAACTATCATTAAAAAA+AGG + chr2_2:3125507-3125526 Msa0230920:intron 20.0%
!! TAATACATAATCACTTATTC+TGG - chr2_2:3126086-3126105 None:intergenic 20.0%
!! GTTTCTATGATATAATGATT+AGG + chr2_2:3126449-3126468 Msa0230920:CDS 20.0%
!! TTCTATGATATAATGATTAG+GGG + chr2_2:3126451-3126470 Msa0230920:CDS 20.0%
!! AATCTTTCGTAAATAGATAT+AGG + chr2_2:3126893-3126912 Msa0230920:three_prime_UTR 20.0%
! AGTACATAGTACTATAAAAG+AGG + chr2_2:3120425-3120444 Msa0230920:five_prime_UTR 25.0%
! TGTTTGTTTCGAAAAGAAAA+TGG + chr2_2:3120472-3120491 Msa0230920:exon 25.0%
! TAACTAACAAGATAGAAGAT+GGG - chr2_2:3120884-3120903 None:intergenic 25.0%
! ATAACTAACAAGATAGAAGA+TGG - chr2_2:3120885-3120904 None:intergenic 25.0%
! GTATTGTAAATAAGCTGAAT+AGG - chr2_2:3121030-3121049 None:intergenic 25.0%
! AATCAATAATACCTTGAGTT+TGG - chr2_2:3121060-3121079 None:intergenic 25.0%
! ACACAAACAAGAAATCTAAA+GGG - chr2_2:3121086-3121105 None:intergenic 25.0%
! AACACAAACAAGAAATCTAA+AGG - chr2_2:3121087-3121106 None:intergenic 25.0%
!! TTTAGATTTCTTGTTTGTGT+TGG + chr2_2:3121086-3121105 Msa0230920:intron 25.0%
!!! GTCAAATTGATTTTTGTTCT+GGG + chr2_2:3121183-3121202 Msa0230920:CDS 25.0%
! ACTTTCTTTCTTATAGCATT+TGG + chr2_2:3121470-3121489 Msa0230920:CDS 25.0%
! GAATAAAGAACAAAATACCA+CGG - chr2_2:3122130-3122149 None:intergenic 25.0%
! TTTCAGTAATGCTTAATAGA+GGG - chr2_2:3122605-3122624 None:intergenic 25.0%
!! CCATCTTTTTATGTAAAACT+CGG - chr2_2:3122776-3122795 None:intergenic 25.0%
! ATATCTTCTCTGGATATTTA+GGG - chr2_2:3123280-3123299 None:intergenic 25.0%
! AATATCTTCTCTGGATATTT+AGG - chr2_2:3123281-3123300 None:intergenic 25.0%
! TATGGAATGGACAAAATTTA+GGG - chr2_2:3123350-3123369 None:intergenic 25.0%
! ATATGGAATGGACAAAATTT+AGG - chr2_2:3123351-3123370 None:intergenic 25.0%
! TGCATAATAGCAATAATGTA+AGG - chr2_2:3123389-3123408 None:intergenic 25.0%
!! CCTATTTTATGTTTCTTGAA+AGG - chr2_2:3123443-3123462 None:intergenic 25.0%
! CCTTTCAAGAAACATAAAAT+AGG + chr2_2:3123440-3123459 Msa0230920:intron 25.0%
! TCAAATCAAGCTACATTTAA+AGG + chr2_2:3123463-3123482 Msa0230920:intron 25.0%
! TCTTGACTACTGTATATTAA+AGG + chr2_2:3123487-3123506 Msa0230920:intron 25.0%
! TGAGTAGGCAATATTAAATT+TGG + chr2_2:3124087-3124106 Msa0230920:intron 25.0%
!! AAATTTAGAGCATAAGACTT+TGG + chr2_2:3124133-3124152 Msa0230920:intron 25.0%
! AAGAATATAGAAAGCTATTG+AGG - chr2_2:3124613-3124632 None:intergenic 25.0%
!!! TTTTTTTTTTTGCGGTCTAT+AGG - chr2_2:3124808-3124827 None:intergenic 25.0%
! ACAACAACAAAAAAAACTTC+AGG - chr2_2:3124854-3124873 None:intergenic 25.0%
! CAAAAGTTATCCAGTTTAAA+AGG - chr2_2:3124896-3124915 None:intergenic 25.0%
! GAACATAAAATATAAGGCAT+TGG - chr2_2:3125042-3125061 None:intergenic 25.0%
!! TTTTATGTTCTTTAACCCTT+TGG + chr2_2:3125052-3125071 Msa0230920:intron 25.0%
! AGTATATTGTATACACCAAA+GGG - chr2_2:3125070-3125089 None:intergenic 25.0%
! TCAAGTCAAGCTATAAAATA+TGG - chr2_2:3125377-3125396 None:intergenic 25.0%
! TTAATGATAGTTGCAAAATG+AGG - chr2_2:3125503-3125522 None:intergenic 25.0%
! ATGCTGTCAACATATAAATA+TGG + chr2_2:3125567-3125586 Msa0230920:intron 25.0%
! CATATAATTTCTTCAGATTC+AGG + chr2_2:3125623-3125642 Msa0230920:intron 25.0%
!! GTTTTGTGAACTTATTTGAA+AGG + chr2_2:3125859-3125878 Msa0230920:intron 25.0%
! ATACAAAGTCAACTTCTTTA+AGG + chr2_2:3125948-3125967 Msa0230920:CDS 25.0%
!! TTAGTGAAATTTTGGATTCT+AGG + chr2_2:3126038-3126057 Msa0230920:CDS 25.0%
! GCAAACATAAGTTTAAATGA+AGG - chr2_2:3126200-3126219 None:intergenic 25.0%
! GACATATAATATTGGAATTG+TGG + chr2_2:3126354-3126373 Msa0230920:intron 25.0%
! AACAACAAAAACATCATCAA+GGG - chr2_2:3126572-3126591 None:intergenic 25.0%
! AAACAACAAAAACATCATCA+AGG - chr2_2:3126573-3126592 None:intergenic 25.0%
! TCCAAAATTTGTCAAGAAAT+TGG + chr2_2:3126819-3126838 Msa0230920:three_prime_UTR 25.0%
!! ACCAATTTCTTGACAAATTT+TGG - chr2_2:3126823-3126842 None:intergenic 25.0%
ATCAACAAAGTACACTTCAT+CGG + chr2_2:3120382-3120401 Msa0230920:five_prime_UTR 30.0%
CCAATTCCATTGTTATCATT+GGG - chr2_2:3120608-3120627 None:intergenic 30.0%
TCCAATTCCATTGTTATCAT+TGG - chr2_2:3120609-3120628 None:intergenic 30.0%
AATGATAACAATGGAATTGG+AGG + chr2_2:3120608-3120627 Msa0230920:CDS 30.0%
! AATTCAATTTCTTTGGTTCC+AGG + chr2_2:3121139-3121158 Msa0230920:intron 30.0%
!! GGTCAAATTGATTTTTGTTC+TGG + chr2_2:3121182-3121201 Msa0230920:CDS 30.0%
!!! ATTGATTTTTGTTCTGGGAA+TGG + chr2_2:3121188-3121207 Msa0230920:CDS 30.0%
AAAAACATCGATACAAGAAG+AGG + chr2_2:3121211-3121230 Msa0230920:CDS 30.0%
TAAGCAACTCTCTTCTTTAA+TGG - chr2_2:3121389-3121408 None:intergenic 30.0%
! TAGCTTTGCATAAGGATATA+TGG - chr2_2:3121432-3121451 None:intergenic 30.0%
TTCTTTCTTATAGCATTTGG+TGG + chr2_2:3121473-3121492 Msa0230920:CDS 30.0%
TTATATTTGCCATGATGCTT+GGG + chr2_2:3121642-3121661 Msa0230920:CDS 30.0%
! AAGGTTGATTCACTTAGAAA+AGG + chr2_2:3121689-3121708 Msa0230920:CDS 30.0%
! TTTCTAAGAAAACCAATGAG+GGG - chr2_2:3121778-3121797 None:intergenic 30.0%
! GTTTCTAAGAAAACCAATGA+GGG - chr2_2:3121779-3121798 None:intergenic 30.0%
! TGTTTCTAAGAAAACCAATG+AGG - chr2_2:3121780-3121799 None:intergenic 30.0%
! GAATTTAGTTTATCTGACGA+GGG + chr2_2:3121839-3121858 Msa0230920:intron 30.0%
!! TGATAGTGATATTTTACTGC+AGG + chr2_2:3121916-3121935 Msa0230920:intron 30.0%
! GATAGTGATATTTTACTGCA+GGG + chr2_2:3121917-3121936 Msa0230920:intron 30.0%
ACATCTGTAATATGTAGAAG+TGG + chr2_2:3122067-3122086 Msa0230920:CDS 30.0%
GTTCTTCATTATCTATTTGC+AGG + chr2_2:3122193-3122212 Msa0230920:intron 30.0%
TCACCAACAAAACAACAAAA+GGG - chr2_2:3122298-3122317 None:intergenic 30.0%
TTTGAATAATAACCTGTGCA+AGG - chr2_2:3122573-3122592 None:intergenic 30.0%
GTTTCAGTAATGCTTAATAG+AGG - chr2_2:3122606-3122625 None:intergenic 30.0%
CTATTAAGCATTACTGAAAC+TGG + chr2_2:3122606-3122625 Msa0230920:intron 30.0%
! CCGAGTTTTACATAAAAAGA+TGG + chr2_2:3122773-3122792 Msa0230920:CDS 30.0%
CTCAGAACATAATTATCATC+TGG - chr2_2:3122904-3122923 None:intergenic 30.0%
!! GATAATTATGTTCTGAGAGA+TGG + chr2_2:3122907-3122926 Msa0230920:CDS 30.0%
TAAATTAGTGATCATAGCCA+TGG + chr2_2:3123109-3123128 Msa0230920:intron 30.0%
AAATTAGTGATCATAGCCAT+GGG + chr2_2:3123110-3123129 Msa0230920:intron 30.0%
AAACATGTCATATGAAATGC+TGG - chr2_2:3123200-3123219 None:intergenic 30.0%
TATCTTCTCTGGATATTTAG+GGG - chr2_2:3123279-3123298 None:intergenic 30.0%
! TTTAAGGCAGTAATATGGAA+TGG - chr2_2:3123363-3123382 None:intergenic 30.0%
! GGATATTTAAGGCAGTAATA+TGG - chr2_2:3123368-3123387 None:intergenic 30.0%
TTAGTGTAAGCTAAGCTAAT+GGG - chr2_2:3123526-3123545 None:intergenic 30.0%
ATTAGTGTAAGCTAAGCTAA+TGG - chr2_2:3123527-3123546 None:intergenic 30.0%
CTTAGCTTACACTAATCTAT+AGG + chr2_2:3123531-3123550 Msa0230920:intron 30.0%
TTATGATACTCTACACACAT+AGG + chr2_2:3123594-3123613 Msa0230920:intron 30.0%
TTGAGAATGATTACAAAGAC+GGG - chr2_2:3123665-3123684 None:intergenic 30.0%
CTTGAGAATGATTACAAAGA+CGG - chr2_2:3123666-3123685 None:intergenic 30.0%
GATTCAAACTTCTAATACTG+TGG + chr2_2:3123758-3123777 Msa0230920:intron 30.0%
CAAATCATTGAGCAATTAGA+CGG - chr2_2:3124026-3124045 None:intergenic 30.0%
AATTCAATACCAGATGCTAT+AGG + chr2_2:3124239-3124258 Msa0230920:intron 30.0%
CATAATATTCCTATAGCATC+TGG - chr2_2:3124251-3124270 None:intergenic 30.0%
! TGTTTACTCAGGTTTTTCAT+AGG + chr2_2:3124321-3124340 Msa0230920:intron 30.0%
! ACCAATTCATCCTTGATTTT+AGG + chr2_2:3124577-3124596 Msa0230920:intron 30.0%
ACCTAAAATCAAGGATGAAT+TGG - chr2_2:3124581-3124600 None:intergenic 30.0%
AATCGTTGAACCTAAAATCA+AGG - chr2_2:3124590-3124609 None:intergenic 30.0%
!! GAAAAGAGTATTACATCCAA+AGG - chr2_2:3124700-3124719 None:intergenic 30.0%
AAACTTCAGGTACAGTAAAT+TGG - chr2_2:3124841-3124860 None:intergenic 30.0%
TATCCAGTTTAAAAGGCTTT+AGG - chr2_2:3124889-3124908 None:intergenic 30.0%
CAGTATATTGTATACACCAA+AGG - chr2_2:3125071-3125090 None:intergenic 30.0%
TTGGTGTATACAATATACTG+TGG + chr2_2:3125071-3125090 Msa0230920:intron 30.0%
CTGCAAAACAATAATGATGA+AGG - chr2_2:3125137-3125156 None:intergenic 30.0%
!! CTTCATCATTATTGTTTTGC+AGG + chr2_2:3125135-3125154 Msa0230920:intron 30.0%
TTTCAAGCTTACAGAATCAA+AGG - chr2_2:3125344-3125363 None:intergenic 30.0%
ACTGTATACTAACTCTTAAG+AGG + chr2_2:3125679-3125698 Msa0230920:intron 30.0%
AGTGTCATGATCTTCATATA+AGG + chr2_2:3125823-3125842 Msa0230920:intron 30.0%
! AAACAAAAAAAAAGAGGCGT+CGG - chr2_2:3125899-3125918 None:intergenic 30.0%
! AAGAAGTTGACTTTGTATCT+CGG - chr2_2:3125946-3125965 None:intergenic 30.0%
!! TCAACTTCTTTAAGGTTATC+TGG + chr2_2:3125956-3125975 Msa0230920:CDS 30.0%
!! CAACTTCTTTAAGGTTATCT+GGG + chr2_2:3125957-3125976 Msa0230920:CDS 30.0%
TTATGTATTATCCAATGAGC+TGG + chr2_2:3126096-3126115 Msa0230920:CDS 30.0%
CAAATAATTCCTCAAGAACA+CGG - chr2_2:3126165-3126184 None:intergenic 30.0%
TGTTCTTGAGGAATTATTTG+CGG + chr2_2:3126165-3126184 Msa0230920:CDS 30.0%
TCAAATAAATAGAACTCTGC+TGG - chr2_2:3126415-3126434 None:intergenic 30.0%
AGAGTTCTATTTATTTGACC+AGG + chr2_2:3126417-3126436 Msa0230920:CDS 30.0%
ACAAGAAAGGAGATTGTTAT+AGG + chr2_2:3126478-3126497 Msa0230920:CDS 30.0%
AAAAATCTGTGCCAAGAAAA+TGG + chr2_2:3126545-3126564 Msa0230920:CDS 30.0%
!! TACCTTTTTGGCAAGTTAAA+CGG - chr2_2:3126712-3126731 None:intergenic 30.0%
!!! TTCTTGACAAATTTTGGAAC+CGG - chr2_2:3126817-3126836 None:intergenic 30.0%
TAAATAGATATAGGCGACTA+GGG + chr2_2:3126902-3126921 Msa0230920:three_prime_UTR 30.0%
GAAGTGTACTTTGTTGATGT+TGG - chr2_2:3120380-3120399 None:intergenic 35.0%
AGTGTCTTTGTCTTCTTCAA+AGG - chr2_2:3120545-3120564 None:intergenic 35.0%
CCATTGTTATCATTGGGATT+GGG - chr2_2:3120602-3120621 None:intergenic 35.0%
TCCATTGTTATCATTGGGAT+TGG - chr2_2:3120603-3120622 None:intergenic 35.0%
CCCAATGATAACAATGGAAT+TGG + chr2_2:3120605-3120624 Msa0230920:CDS 35.0%
CTGATTTCTCAGAACAACAA+TGG + chr2_2:3120660-3120679 Msa0230920:CDS 35.0%
! TGTTTGTCTTCTTTTTCTGG+AGG - chr2_2:3120717-3120736 None:intergenic 35.0%
! AGGTGTTTGTCTTCTTTTTC+TGG - chr2_2:3120720-3120739 None:intergenic 35.0%
!! GATAGAGTGTTGTTGTTGTT+TGG - chr2_2:3120855-3120874 None:intergenic 35.0%
ATACAAACTTGCCAAACTCA+AGG + chr2_2:3121046-3121065 Msa0230920:CDS 35.0%
! ATTTCTTGTTTGTGTTGGAC+TGG + chr2_2:3121091-3121110 Msa0230920:intron 35.0%
AGAGTTGAAGTTTCATATCC+TGG - chr2_2:3121160-3121179 None:intergenic 35.0%
GATATGAAACTTCAACTCTG+TGG + chr2_2:3121161-3121180 Msa0230920:CDS 35.0%
AAAGAAGAGAGTTGCTTACA+TGG + chr2_2:3121391-3121410 Msa0230920:CDS 35.0%
CTTATATTTGCCATGATGCT+TGG + chr2_2:3121641-3121660 Msa0230920:CDS 35.0%
! GGAATTTAGTTTATCTGACG+AGG + chr2_2:3121838-3121857 Msa0230920:intron 35.0%
ACATAATGCACTCAGATGAA+TGG - chr2_2:3121865-3121884 None:intergenic 35.0%
AGAAAAGGAAAAGGAGGAAA+TGG + chr2_2:3122006-3122025 Msa0230920:CDS 35.0%
AAAGCTCGAATTCGATTTCA+TGG + chr2_2:3122042-3122061 Msa0230920:CDS 35.0%
AAGCTCGAATTCGATTTCAT+GGG + chr2_2:3122043-3122062 Msa0230920:CDS 35.0%
TTTAGGTCAGCAAGTATAAG+TGG - chr2_2:3122097-3122116 None:intergenic 35.0%
! TATACTTGCTGACCTAAAGA+AGG + chr2_2:3122099-3122118 Msa0230920:CDS 35.0%
TTTGCAGGTTTCAGTTTCAA+AGG + chr2_2:3122208-3122227 Msa0230920:intron 35.0%
!!! TGCAATCATTGTTTTAGCTG+CGG + chr2_2:3122235-3122254 Msa0230920:CDS 35.0%
!!! TCACCCTTTTGTTGTTTTGT+TGG + chr2_2:3122292-3122311 Msa0230920:intron 35.0%
GTCACCAACAAAACAACAAA+AGG - chr2_2:3122299-3122318 None:intergenic 35.0%
! TTGGTGACTAATTCTTGCAT+AGG + chr2_2:3122311-3122330 Msa0230920:intron 35.0%
! TTCTTAGTCAGTGTTTTCCT+CGG + chr2_2:3122340-3122359 Msa0230920:intron 35.0%
GTTGTTGCACATGATGTAAT+TGG + chr2_2:3122514-3122533 Msa0230920:CDS 35.0%
TATGGACTTAATGACTTCAC+CGG + chr2_2:3122644-3122663 Msa0230920:intron 35.0%
AAGTTTAGGTAACTGGAAAC+CGG - chr2_2:3122675-3122694 None:intergenic 35.0%
TGATACCAAGTTTAGGTAAC+TGG - chr2_2:3122682-3122701 None:intergenic 35.0%
!!! TTTTTTCTCTTGGCCAGATA+TGG + chr2_2:3122725-3122744 Msa0230920:intron 35.0%
! TTTTTCTCTTGGCCAGATAT+GGG + chr2_2:3122726-3122745 Msa0230920:intron 35.0%
AAAAGAAGATCATCCAGTTC+AGG - chr2_2:3122799-3122818 None:intergenic 35.0%
TAAATGGATCCAATGCTGAA+AGG - chr2_2:3123016-3123035 None:intergenic 35.0%
! GTATATCTAGCGCATTTTCT+TGG + chr2_2:3123080-3123099 Msa0230920:intron 35.0%
! ATAGTTTGTATAGGTACGCA+AGG + chr2_2:3123229-3123248 Msa0230920:intron 35.0%
! TAGTTTGTATAGGTACGCAA+GGG + chr2_2:3123230-3123249 Msa0230920:intron 35.0%
ATCTTCTCTGGATATTTAGG+GGG - chr2_2:3123278-3123297 None:intergenic 35.0%
CCACAAAACAATATCTTCTC+TGG - chr2_2:3123290-3123309 None:intergenic 35.0%
!! CCAGAGAAGATATTGTTTTG+TGG + chr2_2:3123287-3123306 Msa0230920:CDS 35.0%
!! AGAAGATATTGTTTTGTGGC+TGG + chr2_2:3123291-3123310 Msa0230920:CDS 35.0%
TGATCATGTCATCAATGTCA+CGG - chr2_2:3123319-3123338 None:intergenic 35.0%
! TGACATTGATGACATGATCA+TGG + chr2_2:3123319-3123338 Msa0230920:CDS 35.0%
ACACACATAGGATATTAGTG+AGG + chr2_2:3123606-3123625 Msa0230920:intron 35.0%
ATTAGTGAGGTTCATCCTAT+TGG + chr2_2:3123619-3123638 Msa0230920:intron 35.0%
TTAGTGAGGTTCATCCTATT+GGG + chr2_2:3123620-3123639 Msa0230920:intron 35.0%
CAACAGTATAGATTCTCTCT+AGG + chr2_2:3123731-3123750 Msa0230920:intron 35.0%
!! TTGAGTTTTGACACTCTCAA+AGG + chr2_2:3123799-3123818 Msa0230920:intron 35.0%
ACACTCTCAAAGGTTGTATT+TGG + chr2_2:3123809-3123828 Msa0230920:intron 35.0%
TCACATGAATCTTATGTGCT+TGG - chr2_2:3123861-3123880 None:intergenic 35.0%
ATTGATCTACTATGCCTACA+TGG + chr2_2:3123899-3123918 Msa0230920:intron 35.0%
ATCACAAATCCATTCCATGT+AGG - chr2_2:3123916-3123935 None:intergenic 35.0%
! ATTATCCCTGTGCTGTTATT+TGG - chr2_2:3123973-3123992 None:intergenic 35.0%
AATCTCTCTGTAGACATTGT+AGG + chr2_2:3123990-3124009 Msa0230920:intron 35.0%
CGTCTAATTGCTCAATGATT+TGG + chr2_2:3124024-3124043 Msa0230920:intron 35.0%
! ATAAGACTTTGGAAGTGTGA+GGG + chr2_2:3124144-3124163 Msa0230920:intron 35.0%
ATTGGATGTAGAAAGGCTAT+GGG + chr2_2:3124171-3124190 Msa0230920:intron 35.0%
!! TTGAATTGAGGTTTAGGTTG+AGG - chr2_2:3124226-3124245 None:intergenic 35.0%
! CTGGTATTGAATTGAGGTTT+AGG - chr2_2:3124232-3124251 None:intergenic 35.0%
! TAGCATCTGGTATTGAATTG+AGG - chr2_2:3124238-3124257 None:intergenic 35.0%
! TCAAGGATGAATTGGTGATA+AGG - chr2_2:3124573-3124592 None:intergenic 35.0%
GTATTACATCCAAAGGTTGT+GGG - chr2_2:3124693-3124712 None:intergenic 35.0%
AGTATTACATCCAAAGGTTG+TGG - chr2_2:3124694-3124713 None:intergenic 35.0%
ATAGGAACGCTATTTGGTTA+GGG - chr2_2:3124790-3124809 None:intergenic 35.0%
TATAGGAACGCTATTTGGTT+AGG - chr2_2:3124791-3124810 None:intergenic 35.0%
GTTCAATGAAGTTCCTGAAA+AGG + chr2_2:3125198-3125217 Msa0230920:CDS 35.0%
! TTCTTCTCTCTTTCCTTTTC+AGG - chr2_2:3125214-3125233 None:intergenic 35.0%
TCAAACTCTGAACATTCACT+TGG - chr2_2:3125430-3125449 None:intergenic 35.0%
AGGACAGTTAAACTAAGCAA+CGG + chr2_2:3125643-3125662 Msa0230920:intron 35.0%
!! CTGCTAGTTTAGCATTTTTG+AGG + chr2_2:3126289-3126308 Msa0230920:intron 35.0%
GTTCTATTTATTTGACCAGG+AGG + chr2_2:3126420-3126439 Msa0230920:CDS 35.0%
! TTGGCACAGATTTTTCTGAA+GGG - chr2_2:3126540-3126559 None:intergenic 35.0%
!!! GTTTTTGTTGTTTTAGCCTC+AGG + chr2_2:3126580-3126599 Msa0230920:CDS 35.0%
CATCATGAGGACAAAACATA+AGG - chr2_2:3126642-3126661 None:intergenic 35.0%
GTAAATAGATATAGGCGACT+AGG + chr2_2:3126901-3126920 Msa0230920:three_prime_UTR 35.0%
CATTTGGAAACTTTGAACTC+AGG + chr2_2:3126951-3126970 Msa0230920:three_prime_UTR 35.0%
GTCTTTGTCTTCTTCAAAGG+TGG - chr2_2:3120542-3120561 None:intergenic 40.0%
!! GAAACTCTGAGATTGAGAGA+AGG - chr2_2:3120569-3120588 None:intergenic 40.0%
TTGTTATCATTGGGATTGGG+AGG - chr2_2:3120599-3120618 None:intergenic 40.0%
CCCAATCCCAATGATAACAA+TGG + chr2_2:3120599-3120618 Msa0230920:CDS 40.0%
AGAAGGTTTACAGGAGGTTT+GGG - chr2_2:3120752-3120771 None:intergenic 40.0%
AAGAAGGTTTACAGGAGGTT+TGG - chr2_2:3120753-3120772 None:intergenic 40.0%
!! TTGTTGTTGTTTGGTGATGG+AGG - chr2_2:3120846-3120865 None:intergenic 40.0%
!! GTGTTGTTGTTGTTTGGTGA+TGG - chr2_2:3120849-3120868 None:intergenic 40.0%
AACAAGATAGAAGATGGGAG+AGG - chr2_2:3120879-3120898 None:intergenic 40.0%
GAGGAGAACAGAAAGTAACA+AGG + chr2_2:3121355-3121374 Msa0230920:CDS 40.0%
GAGAACAGAAAGTAACAAGG+AGG + chr2_2:3121358-3121377 Msa0230920:CDS 40.0%
! AGTGCAAGTAGCTTTGCATA+AGG - chr2_2:3121440-3121459 None:intergenic 40.0%
TGGTGGTTTAGCATTGTATG+CGG + chr2_2:3121490-3121509 Msa0230920:CDS 40.0%
TTAGCATTGTATGCGGTTAC+TGG + chr2_2:3121497-3121516 Msa0230920:CDS 40.0%
GGAAATCATGCTGAAACAGA+AGG + chr2_2:3121572-3121591 Msa0230920:CDS 40.0%
GCTTGTTTCGGATGCTATAT+CGG + chr2_2:3121664-3121683 Msa0230920:CDS 40.0%
AGAAACCATGTACTCATCCT+TGG + chr2_2:3121731-3121750 Msa0230920:CDS 40.0%
! CAAATTGGTAATCCCCTCAT+TGG + chr2_2:3121763-3121782 Msa0230920:intron 40.0%
! GCAATAGCCAATAAGAGTGT+TGG + chr2_2:3121959-3121978 Msa0230920:CDS 40.0%
!! ATAGCCAATAAGAGTGTTGG+TGG + chr2_2:3121962-3121981 Msa0230920:CDS 40.0%
TATTGTGGTGCTTGCAGAAA+AGG + chr2_2:3121991-3122010 Msa0230920:CDS 40.0%
GGAAAAGGAGGAAATGGAAA+TGG + chr2_2:3122012-3122031 Msa0230920:CDS 40.0%
AGCTCGAATTCGATTTCATG+GGG + chr2_2:3122044-3122063 Msa0230920:CDS 40.0%
AGAGTTGTTCTTAGCTTAGC+TGG + chr2_2:3122394-3122413 Msa0230920:CDS 40.0%
TCTTAGCTTAGCTGGTGTAA+AGG + chr2_2:3122402-3122421 Msa0230920:CDS 40.0%
TCACTAAGGGTTCATTGTCA+AGG - chr2_2:3122465-3122484 None:intergenic 40.0%
GAACCCTTAGTGAAACTTGT+TGG + chr2_2:3122472-3122491 Msa0230920:CDS 40.0%
CCACCAACAAGTTTCACTAA+GGG - chr2_2:3122478-3122497 None:intergenic 40.0%
TCCACCAACAAGTTTCACTA+AGG - chr2_2:3122479-3122498 None:intergenic 40.0%
AGCATTACTGAAACTGGTAG+TGG + chr2_2:3122612-3122631 Msa0230920:intron 40.0%
!! TGGTAGTGGCTCAAATGTTA+TGG + chr2_2:3122626-3122645 Msa0230920:intron 40.0%
GGTTTCCAGTTACCTAAACT+TGG + chr2_2:3122674-3122693 Msa0230920:intron 40.0%
CACGGTATGATACCAAGTTT+AGG - chr2_2:3122689-3122708 None:intergenic 40.0%
CATAAAAAGATGGCCTGAAC+TGG + chr2_2:3122783-3122802 Msa0230920:CDS 40.0%
AGCATAAGTGTCATCATCCT+CGG - chr2_2:3122953-3122972 None:intergenic 40.0%
TAGAACAGAAAGATGACCTC+TGG - chr2_2:3122988-3123007 None:intergenic 40.0%
TAGTGAGGTTCATCCTATTG+GGG + chr2_2:3123621-3123640 Msa0230920:intron 40.0%
! CCATTTCTAGATTCCCCAAT+AGG - chr2_2:3123637-3123656 None:intergenic 40.0%
CCTATTGGGGAATCTAGAAA+TGG + chr2_2:3123634-3123653 Msa0230920:intron 40.0%
TCTACTATGCCTACATGGAA+TGG + chr2_2:3123904-3123923 Msa0230920:intron 40.0%
ATGTCACCAAATAACAGCAC+AGG + chr2_2:3123964-3123983 Msa0230920:intron 40.0%
TGTCACCAAATAACAGCACA+GGG + chr2_2:3123965-3123984 Msa0230920:intron 40.0%
! CATAAGACTTTGGAAGTGTG+AGG + chr2_2:3124143-3124162 Msa0230920:intron 40.0%
GGGATAGATTGGATGTAGAA+AGG + chr2_2:3124164-3124183 Msa0230920:intron 40.0%
GATTGGATGTAGAAAGGCTA+TGG + chr2_2:3124170-3124189 Msa0230920:intron 40.0%
AGACTTGAATGAGGGATGTT+TGG - chr2_2:3124288-3124307 None:intergenic 40.0%
CTAGGTAGAGACTTGAATGA+GGG - chr2_2:3124296-3124315 None:intergenic 40.0%
CTCATTCAAGTCTCTACCTA+GGG + chr2_2:3124295-3124314 Msa0230920:intron 40.0%
TCATTCAAGTCTCTACCTAG+GGG + chr2_2:3124296-3124315 Msa0230920:intron 40.0%
! AATTGGTGATAAGGCACCTT+TGG - chr2_2:3124564-3124583 None:intergenic 40.0%
ATTAAATCACCAGTTTGCGG+AGG - chr2_2:3124767-3124786 None:intergenic 40.0%
GGGATTAAATCACCAGTTTG+CGG - chr2_2:3124770-3124789 None:intergenic 40.0%
! GCACCTAAAGCCTTTTAAAC+TGG + chr2_2:3124883-3124902 Msa0230920:intron 40.0%
!!! GCAGGTTTTAGAAGCATTCT+TGG + chr2_2:3125153-3125172 Msa0230920:intron 40.0%
AGAACATAAAGCTTGTCCAC+CGG + chr2_2:3125269-3125288 Msa0230920:CDS 40.0%
ACAGAATCAAAGGTCTCCAA+TGG - chr2_2:3125334-3125353 None:intergenic 40.0%
TCTGAACATTCACTTGGACA+TGG - chr2_2:3125424-3125443 None:intergenic 40.0%
TCCTACTTCAACATGCACTT+TGG - chr2_2:3125593-3125612 None:intergenic 40.0%
CTGACTCATCTGCAAGAATA+AGG - chr2_2:3125711-3125730 None:intergenic 40.0%
TATTCTTGCAGATGAGTCAG+TGG + chr2_2:3125711-3125730 Msa0230920:CDS 40.0%
AATGAGCAGAAGAGTAGCAA+GGG - chr2_2:3125767-3125786 None:intergenic 40.0%
TCTGCTCATTCGTGATATAC+AGG + chr2_2:3125777-3125796 Msa0230920:CDS 40.0%
ACTGATATGAAATGCAGCAG+CGG - chr2_2:3125806-3125825 None:intergenic 40.0%
!! AAAAAAAAGAGGCGTCGGAT+GGG - chr2_2:3125894-3125913 None:intergenic 40.0%
!! AAAAAAAAAGAGGCGTCGGA+TGG - chr2_2:3125895-3125914 None:intergenic 40.0%
! GTTGACTTTGTATCTCGGTA+TGG - chr2_2:3125941-3125960 None:intergenic 40.0%
TCTTGAGGAATTATTTGCGG+AGG + chr2_2:3126168-3126187 Msa0230920:CDS 40.0%
TTGGAATTGTGGTGCACTTA+TGG + chr2_2:3126365-3126384 Msa0230920:intron 40.0%
! CTTGGCACAGATTTTTCTGA+AGG - chr2_2:3126541-3126560 None:intergenic 40.0%
! TCATCAAGGGACCATTTTCT+TGG - chr2_2:3126559-3126578 None:intergenic 40.0%
TTTCTTCTGTCATTCACCTG+AGG - chr2_2:3126599-3126618 None:intergenic 40.0%
TCAGGTGAATGACAGAAGAA+AGG + chr2_2:3126598-3126617 Msa0230920:exon 40.0%
TGGACATCATAGTGTAGTGT+AGG - chr2_2:3126676-3126695 None:intergenic 40.0%
AAGTTAAACGGAGAGGGAAA+GGG - chr2_2:3126700-3126719 None:intergenic 40.0%
TTTGGCAAGTTAAACGGAGA+GGG - chr2_2:3126706-3126725 None:intergenic 40.0%
! TTTTGGCAAGTTAAACGGAG+AGG - chr2_2:3126707-3126726 None:intergenic 40.0%
!! CTCCGTTTAACTTGCCAAAA+AGG + chr2_2:3126707-3126726 Msa0230920:three_prime_UTR 40.0%
GAAGACTCCTTGAATGTGAA+AGG + chr2_2:3126778-3126797 Msa0230920:three_prime_UTR 40.0%
CTCCTTGAATGTGAAAGGAA+CGG + chr2_2:3126783-3126802 Msa0230920:three_prime_UTR 40.0%
TACTATGTACTGCGTGTGCT+GGG - chr2_2:3120416-3120435 None:intergenic 45.0%
TGGAACTACCCTTCTTTCCT+TGG + chr2_2:3120680-3120699 Msa0230920:CDS 45.0%
TACCCTTCTTTCCTTGGCAT+TGG + chr2_2:3120686-3120705 Msa0230920:CDS 45.0%
TGCCAATGCCAAGGAAAGAA+GGG - chr2_2:3120691-3120710 None:intergenic 45.0%
TGAGGAGGAAGAAGGTTTAC+AGG - chr2_2:3120761-3120780 None:intergenic 45.0%
!!! TGGTTTTGTTGTTGTCGGAG+CGG - chr2_2:3120793-3120812 None:intergenic 45.0%
!!! GGAGGTGGTTTTGTTGTTGT+CGG - chr2_2:3120798-3120817 None:intergenic 45.0%
!! TTGTTTGGTGATGGAGGAAG+AGG - chr2_2:3120840-3120859 None:intergenic 45.0%
! CTGAAGCACTTTGGCATTCT+TGG + chr2_2:3121531-3121550 Msa0230920:CDS 45.0%
CATGCTGAAACAGAAGGAAC+CGG + chr2_2:3121578-3121597 Msa0230920:CDS 45.0%
TTGAGACAGAGACGATTCTC+TGG - chr2_2:3121604-3121623 None:intergenic 45.0%
CGTCTCTGTCTCAATTAGTG+CGG + chr2_2:3121610-3121629 Msa0230920:CDS 45.0%
GTCTCTGTCTCAATTAGTGC+GGG + chr2_2:3121611-3121630 Msa0230920:CDS 45.0%
! CATGATGCTTGGGCTTGTTT+CGG + chr2_2:3121652-3121671 Msa0230920:CDS 45.0%
TTCGGATGCTATATCGGAGA+AGG + chr2_2:3121670-3121689 Msa0230920:CDS 45.0%
ACCACCACCAACACTCTTAT+TGG - chr2_2:3121969-3121988 None:intergenic 45.0%
!! TGTTGGTGGTGGTGTTATTG+TGG + chr2_2:3121976-3121995 Msa0230920:CDS 45.0%
GGTGCTTGCAGAAAAGGAAA+AGG + chr2_2:3121997-3122016 Msa0230920:CDS 45.0%
GCTTGCAGAAAAGGAAAAGG+AGG + chr2_2:3122000-3122019 Msa0230920:CDS 45.0%
!! ACCTAAAGAAGGTATTGCCG+TGG + chr2_2:3122110-3122129 Msa0230920:intron 45.0%
ACCACGGCAATACCTTCTTT+AGG - chr2_2:3122114-3122133 None:intergenic 45.0%
TAGCTTAGCTGGTGTAAAGG+AGG + chr2_2:3122405-3122424 Msa0230920:CDS 45.0%
AGCTTAGCTGGTGTAAAGGA+GGG + chr2_2:3122406-3122425 Msa0230920:CDS 45.0%
GTGTAAAGGAGGGCTTAAGA+GGG + chr2_2:3122416-3122435 Msa0230920:CDS 45.0%
! CTTAAGAGGGCATGTTGTTG+TGG + chr2_2:3122429-3122448 Msa0230920:CDS 45.0%
!! CCCTTAGTGAAACTTGTTGG+TGG + chr2_2:3122475-3122494 Msa0230920:CDS 45.0%
ATAATAACCTGTGCAAGGCC+AGG - chr2_2:3122568-3122587 None:intergenic 45.0%
AATGACTTCACCGGTACATC+CGG + chr2_2:3122653-3122672 Msa0230920:intron 45.0%
TAACTGGAAACCGGATGTAC+CGG - chr2_2:3122666-3122685 None:intergenic 45.0%
CTAGAATGTCCTCCCATATC+TGG - chr2_2:3122741-3122760 None:intergenic 45.0%
CAGATATGGGAGGACATTCT+AGG + chr2_2:3122739-3122758 Msa0230920:intron 45.0%
TTTCCTGATGCAATACCGTG+TGG + chr2_2:3122838-3122857 Msa0230920:CDS 45.0%
TGCAATACCGTGTGGAGTTA+AGG + chr2_2:3122846-3122865 Msa0230920:CDS 45.0%
TTAAGGTTGCTGCAGATGGT+GGG + chr2_2:3122863-3122882 Msa0230920:CDS 45.0%
GATGATGACACTTATGCTCC+AGG + chr2_2:3122955-3122974 Msa0230920:CDS 45.0%
!! TCTAGCTAGCCTTTCAGCAT+TGG + chr2_2:3123004-3123023 Msa0230920:intron 45.0%
ATCATAGCCATGGGTGACTT+GGG + chr2_2:3123119-3123138 Msa0230920:intron 45.0%
! TGGAAGTGTGAGGGATAGAT+TGG + chr2_2:3124153-3124172 Msa0230920:intron 45.0%
CCTAGGTAGAGACTTGAATG+AGG - chr2_2:3124297-3124316 None:intergenic 45.0%
CCTCATTCAAGTCTCTACCT+AGG + chr2_2:3124294-3124313 Msa0230920:intron 45.0%
! ACCTAGGGGTTTGTTTACTC+AGG + chr2_2:3124310-3124329 Msa0230920:intron 45.0%
ACCTGAGTAAACAAACCCCT+AGG - chr2_2:3124314-3124333 None:intergenic 45.0%
! TCTTTTCCGCATCATTGCCT+GGG + chr2_2:3124713-3124732 Msa0230920:intron 45.0%
CGGTCTATAGGAACGCTATT+TGG - chr2_2:3124796-3124815 None:intergenic 45.0%
!! ATAAGGCATTGGTCGAGTCT+AGG - chr2_2:3125031-3125050 None:intergenic 45.0%
!! ACATCCAGAGTTCTGAACCA+GGG - chr2_2:3125180-3125199 None:intergenic 45.0%
!! AACATCCAGAGTTCTGAACC+AGG - chr2_2:3125181-3125200 None:intergenic 45.0%
!! AGAGAGAAGAAACTTGCTGC+TGG + chr2_2:3125223-3125242 Msa0230920:CDS 45.0%
! GCTGGTGAACTTGACGTTTT+TGG + chr2_2:3125241-3125260 Msa0230920:CDS 45.0%
GAACATAAAGCTTGTCCACC+GGG + chr2_2:3125270-3125289 Msa0230920:CDS 45.0%
TAATGACAGCATTTCCCTCC+CGG - chr2_2:3125291-3125310 None:intergenic 45.0%
AGGGAAATGCTGTCATTAGG+CGG + chr2_2:3125293-3125312 Msa0230920:CDS 45.0%
!! AAAGGTGTCCTCCATGTAAC+TGG + chr2_2:3125525-3125544 Msa0230920:intron 45.0%
GCCAAAGTGCATGTTGAAGT+AGG + chr2_2:3125589-3125608 Msa0230920:intron 45.0%
GAATGAGCAGAAGAGTAGCA+AGG - chr2_2:3125768-3125787 None:intergenic 45.0%
!! AAAAAAAGAGGCGTCGGATG+GGG - chr2_2:3125893-3125912 None:intergenic 45.0%
ATCCAATGAGCTGGTTAGCA+TGG + chr2_2:3126105-3126124 Msa0230920:CDS 45.0%
GCAAATCAACCGTGTTCTTG+AGG + chr2_2:3126153-3126172 Msa0230920:CDS 45.0%
TGAGGAATTATTTGCGGAGG+AGG + chr2_2:3126171-3126190 Msa0230920:CDS 45.0%
TCCATCAACTAGACGAGAAG+CGG - chr2_2:3126222-3126241 None:intergenic 45.0%
AATTGTGGTGCACTTATGGC+AGG + chr2_2:3126369-3126388 Msa0230920:intron 45.0%
ATTGTGGTGCACTTATGGCA+GGG + chr2_2:3126370-3126389 Msa0230920:intron 45.0%
GATTAGGGGTCGTACAAGAA+AGG + chr2_2:3126465-3126484 Msa0230920:CDS 45.0%
GATTGTTATAGGCTATCGCC+TGG + chr2_2:3126489-3126508 Msa0230920:CDS 45.0%
GATAATAGCACGCTCTTGGT+TGG - chr2_2:3126515-3126534 None:intergenic 45.0%
!! GGTTGATAATAGCACGCTCT+TGG - chr2_2:3126519-3126538 None:intergenic 45.0%
GGCATGCATGAATCATCATG+AGG - chr2_2:3126655-3126674 None:intergenic 45.0%
CAAGTTAAACGGAGAGGGAA+AGG - chr2_2:3126701-3126720 None:intergenic 45.0%
!! TGCCAAAAAGGTACTGACAG+TGG + chr2_2:3126719-3126738 Msa0230920:three_prime_UTR 45.0%
! TGCCACTGTCAGTACCTTTT+TGG - chr2_2:3126724-3126743 None:intergenic 45.0%
CTCCGTTCCTTTCACATTCA+AGG - chr2_2:3126788-3126807 None:intergenic 45.0%
! GAAAGGAACGGAGATTTTGC+CGG + chr2_2:3126795-3126814 Msa0230920:three_prime_UTR 45.0%
GTAGCAGAGGATAGCACATT+TGG + chr2_2:3126935-3126954 Msa0230920:three_prime_UTR 45.0%
!! GATAAAAAAAAATAAAATAA+TGG - chr2_2:3121119-3121138 None:intergenic 5.0%
!!! AATTTTTTTTTTTTTTTTTG+CGG - chr2_2:3124816-3124835 None:intergenic 5.0%
GTACTATGTACTGCGTGTGC+TGG - chr2_2:3120417-3120436 None:intergenic 50.0%
CTGCCAATGCCAAGGAAAGA+AGG - chr2_2:3120692-3120711 None:intergenic 50.0%
TTTACAGGAGGTTTGGGAGG+AGG - chr2_2:3120746-3120765 None:intergenic 50.0%
AGGTTTACAGGAGGTTTGGG+AGG - chr2_2:3120749-3120768 None:intergenic 50.0%
GGAGGAAGAAGGTTTACAGG+AGG - chr2_2:3120758-3120777 None:intergenic 50.0%
!!! GTTTTGTTGTTGTCGGAGCG+GGG - chr2_2:3120791-3120810 None:intergenic 50.0%
!!! GGTTTTGTTGTTGTCGGAGC+GGG - chr2_2:3120792-3120811 None:intergenic 50.0%
!! TTGGTGATGGAGGAAGAGGA+AGG - chr2_2:3120836-3120855 None:intergenic 50.0%
GCATTGTATGCGGTTACTGG+CGG + chr2_2:3121500-3121519 Msa0230920:CDS 50.0%
! GTAGCATGGCTGAAGCACTT+TGG + chr2_2:3121522-3121541 Msa0230920:CDS 50.0%
TGGACTTATGTAGCTGACGC+AGG + chr2_2:3121551-3121570 Msa0230920:CDS 50.0%
TCTGTCTCAATTAGTGCGGG+TGG + chr2_2:3121614-3121633 Msa0230920:CDS 50.0%
CGAAACAAGCCCAAGCATCA+TGG - chr2_2:3121654-3121673 None:intergenic 50.0%
ACCATGTACTCATCCTTGGC+TGG + chr2_2:3121735-3121754 Msa0230920:CDS 50.0%
TCCAGCCAAGGATGAGTACA+TGG - chr2_2:3121739-3121758 None:intergenic 50.0%
CCAATTTGTCACTCCAGCCA+AGG - chr2_2:3121751-3121770 None:intergenic 50.0%
CCTTGGCTGGAGTGACAAAT+TGG + chr2_2:3121748-3121767 Msa0230920:CDS 50.0%
!! GCCAATAAGAGTGTTGGTGG+TGG + chr2_2:3121965-3121984 Msa0230920:CDS 50.0%
TGCGGACGAAAATGCAGATC+AGG + chr2_2:3122253-3122272 Msa0230920:CDS 50.0%
! CACTCTGGAGACAAATTCCG+AGG - chr2_2:3122360-3122379 None:intergenic 50.0%
TCAAAGCACGTGCATCACTC+TGG - chr2_2:3122375-3122394 None:intergenic 50.0%
GGTGTAAAGGAGGGCTTAAG+AGG + chr2_2:3122415-3122434 Msa0230920:CDS 50.0%
TTCTCTTGGCCAGATATGGG+AGG + chr2_2:3122729-3122748 Msa0230920:intron 50.0%
ACTCCACACGGTATTGCATC+AGG - chr2_2:3122844-3122863 None:intergenic 50.0%
GCAGCAACCTTAACTCCACA+CGG - chr2_2:3122856-3122875 None:intergenic 50.0%
GGAGTTAAGGTTGCTGCAGA+TGG + chr2_2:3122859-3122878 Msa0230920:CDS 50.0%
GTTAAGGTTGCTGCAGATGG+TGG + chr2_2:3122862-3122881 Msa0230920:CDS 50.0%
CATCATCCTCGGCTATGACA+AGG - chr2_2:3122942-3122961 None:intergenic 50.0%
GAAAGATGACCTCTGGCAGT+GGG - chr2_2:3122981-3123000 None:intergenic 50.0%
AGAAAGATGACCTCTGGCAG+TGG - chr2_2:3122982-3123001 None:intergenic 50.0%
GATCATAGCCATGGGTGACT+TGG + chr2_2:3123118-3123137 Msa0230920:intron 50.0%
TGTATTGCCCAAGTCACCCA+TGG - chr2_2:3123129-3123148 None:intergenic 50.0%
! TACGCAAGGGCTATTTCCCT+AGG + chr2_2:3123243-3123262 Msa0230920:CDS 50.0%
TAGGGGGATCACGTATCCTA+GGG - chr2_2:3123262-3123281 None:intergenic 50.0%
TTAGGGGGATCACGTATCCT+AGG - chr2_2:3123263-3123282 None:intergenic 50.0%
GGATGTAGAAAGGCTATGGG+CGG + chr2_2:3124174-3124193 Msa0230920:intron 50.0%
ACATCCAAAGGTTGTGGGCT+TGG - chr2_2:3124688-3124707 None:intergenic 50.0%
! CTCTTTTCCGCATCATTGCC+TGG + chr2_2:3124712-3124731 Msa0230920:intron 50.0%
TTGTGACCCAGGCAATGATG+CGG - chr2_2:3124722-3124741 None:intergenic 50.0%
! GGTCACAAAGTGCTTCCAGT+CGG + chr2_2:3124734-3124753 Msa0230920:intron 50.0%
!! TTAGAAGCATTCTTGGCCCC+TGG + chr2_2:3125160-3125179 Msa0230920:CDS 50.0%
!! CATCCAGAGTTCTGAACCAG+GGG - chr2_2:3125179-3125198 None:intergenic 50.0%
ATAAAGCTTGTCCACCGGGA+GGG + chr2_2:3125274-3125293 Msa0230920:CDS 50.0%
GGGAGGGAAATGCTGTCATT+AGG + chr2_2:3125290-3125309 Msa0230920:CDS 50.0%
TCTCCAATGGAAGACTCTCG+AGG - chr2_2:3125321-3125340 None:intergenic 50.0%
TCCTCCATGTAACTGGTGGA+CGG + chr2_2:3125532-3125551 Msa0230920:intron 50.0%
TCTTGCAGATGAGTCAGTGG+AGG + chr2_2:3125714-3125733 Msa0230920:CDS 50.0%
CTGGGTTCTCTCACAACTCA+TGG + chr2_2:3125975-3125994 Msa0230920:CDS 50.0%
!! CTGAAGCTTGCTGCATTTCG+CGG - chr2_2:3126003-3126022 None:intergenic 50.0%
TGCCATGCTAACCAGCTCAT+TGG - chr2_2:3126110-3126129 None:intergenic 50.0%
GGTTAGCATGGCACTAGCTA+TGG + chr2_2:3126117-3126136 Msa0230920:CDS 50.0%
CATAGAAACAGAGCTCCTCC+TGG - chr2_2:3126438-3126457 None:intergenic 50.0%
TAAACGGAGAGGGAAAGGGA+TGG - chr2_2:3126696-3126715 None:intergenic 50.0%
GGGACAAGTTCAAGTAGCAG+AGG + chr2_2:3126922-3126941 Msa0230920:three_prime_UTR 50.0%
TGGTGGAAGAAGTGAGGAGG+TGG - chr2_2:3120813-3120832 None:intergenic 55.0%
!! AGGTGGTGGAAGAAGTGAGG+AGG - chr2_2:3120816-3120835 None:intergenic 55.0%
!! GGAAGGTGGTGGAAGAAGTG+AGG - chr2_2:3120819-3120838 None:intergenic 55.0%
ATGGAGGAAGAGGAAGGTGG+TGG - chr2_2:3120830-3120849 None:intergenic 55.0%
! GTGATGGAGGAAGAGGAAGG+TGG - chr2_2:3120833-3120852 None:intergenic 55.0%
GACAGAGACGATTCTCTGGC+CGG - chr2_2:3121600-3121619 None:intergenic 55.0%
ATTCAGTGTGCTCTGCAGCC+TGG + chr2_2:3122547-3122566 Msa0230920:CDS 55.0%
CGAAGTCCTTGTCATAGCCG+AGG + chr2_2:3122933-3122952 Msa0230920:CDS 55.0%
GTCTCCAAGCCCACAACCTT+TGG + chr2_2:3124681-3124700 Msa0230920:intron 55.0%
!! CTGGAAGCACTTTGTGACCC+AGG - chr2_2:3124733-3124752 None:intergenic 55.0%
! GGTTTGAAGCCTCCGCAAAC+TGG + chr2_2:3124755-3124774 Msa0230920:intron 55.0%
CATAAAGCTTGTCCACCGGG+AGG + chr2_2:3125273-3125292 Msa0230920:CDS 55.0%
GCACCTCGAGAGTCTTCCAT+TGG + chr2_2:3125315-3125334 Msa0230920:CDS 55.0%
GGTGTCCTCCATGTAACTGG+TGG + chr2_2:3125528-3125547 Msa0230920:intron 55.0%
! CCTCCATGTAACTGGTGGAC+GGG + chr2_2:3125533-3125552 Msa0230920:intron 55.0%
TGTCCCGTCCACCAGTTACA+TGG - chr2_2:3125539-3125558 None:intergenic 55.0%
GCCGCTTCTCGTCTAGTTGA+TGG + chr2_2:3126218-3126237 Msa0230920:intron 55.0%
!! TGGAGGTGCTGCCAATGCCA+AGG - chr2_2:3120700-3120719 None:intergenic 60.0%
ACAGGAGGTTTGGGAGGAGG+AGG - chr2_2:3120743-3120762 None:intergenic 60.0%
GACGGGGATGAGGAGGAAGA+AGG - chr2_2:3120769-3120788 None:intergenic 60.0%
TGTTGTTGTCGGAGCGGGGA+CGG - chr2_2:3120787-3120806 None:intergenic 60.0%
TGCGGTTACTGGCGGTAGCA+TGG + chr2_2:3121508-3121527 Msa0230920:CDS 60.0%
TGCGGAGGCTTCAAACCGAC+TGG - chr2_2:3124752-3124771 None:intergenic 60.0%
TGGCCCCTGGTTCAGAACTC+TGG + chr2_2:3125173-3125192 Msa0230920:CDS 60.0%
TGACAGCATTTCCCTCCCGG+TGG - chr2_2:3125288-3125307 None:intergenic 60.0%
CCCGTCCACCAGTTACATGG+AGG - chr2_2:3125536-3125555 None:intergenic 60.0%
!! AAAGAGGCGTCGGATGGGGA+TGG - chr2_2:3125889-3125908 None:intergenic 60.0%
! TAGCACGCTCTTGGTTGGCC+AGG - chr2_2:3126510-3126529 None:intergenic 60.0%
GGAGGTTTGGGAGGAGGAGG+AGG - chr2_2:3120740-3120759 None:intergenic 65.0%
TTGTTGTCGGAGCGGGGACG+GGG - chr2_2:3120785-3120804 None:intergenic 65.0%
GTTGTTGTCGGAGCGGGGAC+GGG - chr2_2:3120786-3120805 None:intergenic 65.0%
!! TCTGCAGCCTGGCCTTGCAC+AGG + chr2_2:3122558-3122577 Msa0230920:CDS 65.0%
ATGACCTCTGGCAGTGGGCC+TGG - chr2_2:3122976-3122995 None:intergenic 65.0%
TGCTCCAGGCCCACTGCCAG+AGG + chr2_2:3122969-3122988 Msa0230920:CDS 70.0%
GAGCGGGGACGGGGATGAGG+AGG - chr2_2:3120776-3120795 None:intergenic 75.0%
TCGGAGCGGGGACGGGGATG+AGG - chr2_2:3120779-3120798 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 3120349 3127043 3120349 ID=Msa0230920;Name=Msa0230920
chr2_2 mRNA 3120349 3127043 3120349 ID=Msa0230920-mRNA-1;Parent=Msa0230920;Name=Msa0230920-mRNA-1;_AED=0.08;_eAED=0.08;_QI=142|0.90|0.83|1|1|1|12|434|883
chr2_2 exon 3120349 3120895 3120349 ID=Msa0230920-mRNA-1:exon:1127;Parent=Msa0230920-mRNA-1
chr2_2 exon 3120999 3121067 3120999 ID=Msa0230920-mRNA-1:exon:1128;Parent=Msa0230920-mRNA-1
chr2_2 exon 3121161 3121769 3121161 ID=Msa0230920-mRNA-1:exon:1129;Parent=Msa0230920-mRNA-1
chr2_2 exon 3121938 3122120 3121938 ID=Msa0230920-mRNA-1:exon:1130;Parent=Msa0230920-mRNA-1
chr2_2 exon 3122215 3122274 3122215 ID=Msa0230920-mRNA-1:exon:1131;Parent=Msa0230920-mRNA-1
chr2_2 exon 3122376 3122579 3122376 ID=Msa0230920-mRNA-1:exon:1132;Parent=Msa0230920-mRNA-1
chr2_2 exon 3122742 3122990 3122742 ID=Msa0230920-mRNA-1:exon:1133;Parent=Msa0230920-mRNA-1
chr2_2 exon 3123242 3123340 3123242 ID=Msa0230920-mRNA-1:exon:1134;Parent=Msa0230920-mRNA-1
chr2_2 exon 3125157 3125351 3125157 ID=Msa0230920-mRNA-1:exon:1135;Parent=Msa0230920-mRNA-1
chr2_2 exon 3125706 3125798 3125706 ID=Msa0230920-mRNA-1:exon:1136;Parent=Msa0230920-mRNA-1
chr2_2 exon 3125926 3126192 3125926 ID=Msa0230920-mRNA-1:exon:1137;Parent=Msa0230920-mRNA-1
chr2_2 exon 3126391 3127043 3126391 ID=Msa0230920-mRNA-1:exon:1138;Parent=Msa0230920-mRNA-1
chr2_2 five_prime_UTR 3120349 3120490 3120349 ID=Msa0230920-mRNA-1:five_prime_utr;Parent=Msa0230920-mRNA-1
chr2_2 CDS 3120491 3120895 3120491 ID=Msa0230920-mRNA-1:cds;Parent=Msa0230920-mRNA-1
chr2_2 CDS 3120999 3121067 3120999 ID=Msa0230920-mRNA-1:cds;Parent=Msa0230920-mRNA-1
chr2_2 CDS 3121161 3121769 3121161 ID=Msa0230920-mRNA-1:cds;Parent=Msa0230920-mRNA-1
chr2_2 CDS 3121938 3122120 3121938 ID=Msa0230920-mRNA-1:cds;Parent=Msa0230920-mRNA-1
chr2_2 CDS 3122215 3122274 3122215 ID=Msa0230920-mRNA-1:cds;Parent=Msa0230920-mRNA-1
chr2_2 CDS 3122376 3122579 3122376 ID=Msa0230920-mRNA-1:cds;Parent=Msa0230920-mRNA-1
chr2_2 CDS 3122742 3122990 3122742 ID=Msa0230920-mRNA-1:cds;Parent=Msa0230920-mRNA-1
chr2_2 CDS 3123242 3123340 3123242 ID=Msa0230920-mRNA-1:cds;Parent=Msa0230920-mRNA-1
chr2_2 CDS 3125157 3125351 3125157 ID=Msa0230920-mRNA-1:cds;Parent=Msa0230920-mRNA-1
chr2_2 CDS 3125706 3125798 3125706 ID=Msa0230920-mRNA-1:cds;Parent=Msa0230920-mRNA-1
chr2_2 CDS 3125926 3126192 3125926 ID=Msa0230920-mRNA-1:cds;Parent=Msa0230920-mRNA-1
chr2_2 CDS 3126391 3126609 3126391 ID=Msa0230920-mRNA-1:cds;Parent=Msa0230920-mRNA-1
chr2_2 three_prime_UTR 3126610 3127043 3126610 ID=Msa0230920-mRNA-1:three_prime_utr;Parent=Msa0230920-mRNA-1
Gene Sequence

>Msa0230920

ATGGCAAAGAGCAATGAAGAATCATCGAATCTGAATGTGATGAACAAACCACCTTTGAAGAAGACAAAGACACTTCCTTCTCTCAATCTCAGAGTTTCTGTTACTCCTCCCAATCCCAATGATAACAATGGAATTGGAGGAACTTCATCTTCATCTTCAACAACTAAGACTGATTTCTCAGAACAACAATGGAACTACCCTTCTTTCCTTGGCATTGGCAGCACCTCCAGAAAAAGAAGACAAACACCTCCTCCTCCTCCCAAACCTCCTGTAAACCTTCTTCCTCCTCATCCCCGTCCCCGCTCCGACAACAACAAAACCACCTCCTCACTTCTTCCACCACCTTCCTCTTCCTCCATCACCAAACAACAACAACACTCTATCTCCTCTCCCATCTTCTATCTTTTAGTTATCAGTTTTATTATTCTTGTACCCTATTCAGCTTATTTACAATACAAACTTGCCAAACTCAAGGATATGAAACTTCAACTCTGTGGTCAAATTGATTTTTGTTCTGGGAATGGAAAAACATCGATACAAGAAGAGGTTGATGATGATGATAATGCAGATAGTAGAACAATTGCTTTGTATATTGTGCTTTTCACATTGATTTTGCCTTTTGTATTGTACAAATATCTTGATTATCTTCCTCAAATAATTAATTTCTTGAGGAGAACAGAAAGTAACAAGGAGGATGTACCATTAAAGAAGAGAGTTGCTTACATGGTAGATGTATTTTTCTCCATATATCCTTATGCAAAGCTACTTGCACTTCTTTGTGCAACTTTCTTTCTTATAGCATTTGGTGGTTTAGCATTGTATGCGGTTACTGGCGGTAGCATGGCTGAAGCACTTTGGCATTCTTGGACTTATGTAGCTGACGCAGGAAATCATGCTGAAACAGAAGGAACCGGCCAGAGAATCGTCTCTGTCTCAATTAGTGCGGGTGGCATGCTTATATTTGCCATGATGCTTGGGCTTGTTTCGGATGCTATATCGGAGAAGGTTGATTCACTTAGAAAAGGAAAGAGTGAAGTCATCGAAAGAAACCATGTACTCATCCTTGGCTGGAGTGACAAATTGGGCTCACTTTTGAAGCAGCTAGCAATAGCCAATAAGAGTGTTGGTGGTGGTGTTATTGTGGTGCTTGCAGAAAAGGAAAAGGAGGAAATGGAAATGGATATTGCAAAGCTCGAATTCGATTTCATGGGGACATCTGTAATATGTAGAAGTGGCAGTCCACTTATACTTGCTGACCTAAAGAAGGTTTCAGTTTCAAAGGCACGTGCAATCATTGTTTTAGCTGCGGACGAAAATGCAGATCAGAGTGATGCACGTGCTTTGAGAGTTGTTCTTAGCTTAGCTGGTGTAAAGGAGGGCTTAAGAGGGCATGTTGTTGTGGAGATGAGTGACCTTGACAATGAACCCTTAGTGAAACTTGTTGGTGGAGAACTCATTGAAACAGTTGTTGCACATGATGTAATTGGACGTTTGATGATTCAGTGTGCTCTGCAGCCTGGCCTTGCACAGATATGGGAGGACATTCTAGGATTTGAGAATGCCGAGTTTTACATAAAAAGATGGCCTGAACTGGATGATCTTCTTTTCAAAGACATATTAATTTCATTTCCTGATGCAATACCGTGTGGAGTTAAGGTTGCTGCAGATGGTGGGAAGATTGTCATAAATCCAGATGATAATTATGTTCTGAGAGATGGTGACGAAGTCCTTGTCATAGCCGAGGATGATGACACTTATGCTCCAGGCCCACTGCCAGAGGTACGCAAGGGCTATTTCCCTAGGATACGTGATCCCCCTAAATATCCAGAGAAGATATTGTTTTGTGGCTGGCGCCGTGACATTGATGACATGATCATGGTTTTAGAAGCATTCTTGGCCCCTGGTTCAGAACTCTGGATGTTCAATGAAGTTCCTGAAAAGGAAAGAGAGAAGAAACTTGCTGCTGGTGAACTTGACGTTTTTGGACTAGAGAACATAAAGCTTGTCCACCGGGAGGGAAATGCTGTCATTAGGCGGCACCTCGAGAGTCTTCCATTGGAGACCTTTGATTCTATCCTTATTCTTGCAGATGAGTCAGTGGAGGACTCTGTTGCTCATTCTGACTCAAGATCCCTTGCTACTCTTCTGCTCATTCGTGATATACAGTCGAGACGTCTACCATACCGAGATACAAAGTCAACTTCTTTAAGGTTATCTGGGTTCTCTCACAACTCATGGATCCGCGAAATGCAGCAAGCTTCAGATAAATCAATTATAATTAGTGAAATTTTGGATTCTAGGACTAGAAATCTAGTTTCTGTGTCCAGAATAAGTGATTATGTATTATCCAATGAGCTGGTTAGCATGGCACTAGCTATGGTAGCTGAAGACAAGCAAATCAACCGTGTTCTTGAGGAATTATTTGCGGAGGAGGGAAACGAGATGTGTATCAAGCCAGCAGAGTTCTATTTATTTGACCAGGAGGAGCTCTGTTTCTATGATATAATGATTAGGGGTCGTACAAGAAAGGAGATTGTTATAGGCTATCGCCTGGCCAACCAAGAGCGTGCTATTATCAACCCTTCAGAAAAATCTGTGCCAAGAAAATGGTCCCTTGATGATGTTTTTGTTGTTTTAGCCTCAGGTGAATGA

Protein sequence

>Msa0230920

MAKSNEESSNLNVMNKPPLKKTKTLPSLNLRVSVTPPNPNDNNGIGGTSSSSSTTKTDFSEQQWNYPSFLGIGSTSRKRRQTPPPPPKPPVNLLPPHPRPRSDNNKTTSSLLPPPSSSSITKQQQHSISSPIFYLLVISFIILVPYSAYLQYKLAKLKDMKLQLCGQIDFCSGNGKTSIQEEVDDDDNADSRTIALYIVLFTLILPFVLYKYLDYLPQIINFLRRTESNKEDVPLKKRVAYMVDVFFSIYPYAKLLALLCATFFLIAFGGLALYAVTGGSMAEALWHSWTYVADAGNHAETEGTGQRIVSVSISAGGMLIFAMMLGLVSDAISEKVDSLRKGKSEVIERNHVLILGWSDKLGSLLKQLAIANKSVGGGVIVVLAEKEKEEMEMDIAKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLAADENADQSDARALRVVLSLAGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFENAEFYIKRWPELDDLLFKDILISFPDAIPCGVKVAADGGKIVINPDDNYVLRDGDEVLVIAEDDDTYAPGPLPEVRKGYFPRIRDPPKYPEKILFCGWRRDIDDMIMVLEAFLAPGSELWMFNEVPEKEREKKLAAGELDVFGLENIKLVHREGNAVIRRHLESLPLETFDSILILADESVEDSVAHSDSRSLATLLLIRDIQSRRLPYRDTKSTSLRLSGFSHNSWIREMQQASDKSIIISEILDSRTRNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEELCFYDIMIRGRTRKEIVIGYRLANQERAIINPSEKSVPRKWSLDDVFVVLASGE*