Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866280 | MCH84034.1 | 96.694 | 121 | 4 | 0 | 25 | 145 | 81 | 201 | 8.89e-80 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866280 | sp|C6TG62|CSPL9_SOYBN | 75.652 | 115 | 28 | 0 | 25 | 139 | 80 | 194 | 9.87e-61 | 188 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866280 | A0A392MCN9 | 96.694 | 121 | 4 | 0 | 25 | 145 | 81 | 201 | 4.25e-80 | 244 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0060410 | Msa0866280 | 0.805336 | 1.402285e-49 | -8.615850e-47 |
| Msa0658150 | Msa0866280 | 0.824078 | 9.806151e-54 | -8.615850e-47 |
| Msa0685390 | Msa0866280 | -0.804948 | 1.690719e-49 | -8.615850e-47 |
| Msa0703000 | Msa0866280 | 0.826945 | 2.053287e-54 | -8.615850e-47 |
| Msa0730890 | Msa0866280 | 0.802332 | 5.898835e-49 | -8.615850e-47 |
| Msa0775350 | Msa0866280 | 0.802320 | 5.933705e-49 | -8.615850e-47 |
| Msa0807270 | Msa0866280 | 0.983207 | 4.073274e-157 | -8.615850e-47 |
| Msa0812720 | Msa0866280 | 0.814389 | 1.579376e-51 | -8.615850e-47 |
| Msa0130360 | Msa0866280 | 0.820761 | 5.783548e-53 | -8.615850e-47 |
| Msa0188560 | Msa0866280 | 0.812167 | 4.859301e-51 | -8.615850e-47 |
| Msa0189990 | Msa0866280 | 0.829448 | 5.119145e-55 | -8.615850e-47 |
| Msa0230920 | Msa0866280 | 0.817008 | 4.119982e-52 | -8.615850e-47 |
| Msa0463820 | Msa0866280 | -0.816803 | 4.580186e-52 | -8.615850e-47 |
| Msa0247780 | Msa0866280 | 0.868376 | 6.838239e-66 | -8.615850e-47 |
| Msa0325260 | Msa0866280 | 0.863854 | 1.848713e-64 | -8.615850e-47 |
| Msa0336430 | Msa0866280 | 0.804346 | 2.257117e-49 | -8.615850e-47 |
| Msa0336460 | Msa0866280 | 0.809036 | 2.307351e-50 | -8.615850e-47 |
| Msa0336520 | Msa0866280 | 0.800995 | 1.109633e-48 | -8.615850e-47 |
| Msa0567570 | Msa0866280 | 0.801518 | 8.670097e-49 | -8.615850e-47 |
| Msa0568920 | Msa0866280 | 0.812303 | 4.536695e-51 | -8.615850e-47 |
| Msa0847140 | Msa0866280 | 0.803939 | 2.744369e-49 | -8.615850e-47 |
| Msa0853080 | Msa0866280 | 0.820079 | 8.289155e-53 | -8.615850e-47 |
| Msa0854380 | Msa0866280 | 0.801912 | 7.196200e-49 | -8.615850e-47 |
| Msa0866260 | Msa0866280 | 0.988985 | 3.241608e-176 | -8.615850e-47 |
| Msa0866280 | Msa1111910 | 0.819096 | 1.389479e-52 | -8.615850e-47 |
| Msa0866280 | Msa1187750 | 0.800347 | 1.504319e-48 | -8.615850e-47 |
| Msa0866280 | Msa1231440 | 0.804938 | 1.698581e-49 | -8.615850e-47 |
| Msa0866280 | Msa1273320 | 0.808978 | 2.374156e-50 | -8.615850e-47 |
| Msa0866280 | Msa1290090 | -0.808973 | 2.380378e-50 | -8.615850e-47 |
| Msa0866280 | Msa1339530 | 0.812551 | 4.004470e-51 | -8.615850e-47 |
| Msa0866280 | Msa1362590 | 0.812235 | 4.695934e-51 | -8.615850e-47 |
| Msa0866280 | Msa1384130 | 0.853445 | 2.378489e-61 | -8.615850e-47 |
| Msa0866280 | Msa1387100 | -0.809247 | 2.079560e-50 | -8.615850e-47 |
| Msa0866280 | Msa1395080 | 0.827256 | 1.729670e-54 | -8.615850e-47 |
| Msa0866280 | Msa1422820 | -0.803553 | 3.299998e-49 | -8.615850e-47 |
| Msa0866280 | Msa1425810 | 0.958573 | 1.685915e-116 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866280 | MtrunA17_Chr2g0303151 | 96.694 | 121 | 4 | 0 | 25 | 145 | 81 | 201 | 1.28e-83 | 244 |
| Msa0866280 | MtrunA17_Chr8g0381001 | 74.561 | 114 | 29 | 0 | 25 | 138 | 80 | 193 | 4.72e-51 | 161 |
| Msa0866280 | MtrunA17_Chr4g0021111 | 31.858 | 113 | 70 | 1 | 24 | 136 | 52 | 157 | 8.21e-14 | 64.7 |
| Msa0866280 | MtrunA17_Chr7g0268681 | 33.028 | 109 | 72 | 1 | 25 | 133 | 78 | 185 | 1.13e-13 | 65.1 |
| Msa0866280 | MtrunA17_Chr4g0066721 | 36.559 | 93 | 54 | 2 | 25 | 115 | 88 | 177 | 1.31e-13 | 65.1 |
| Msa0866280 | MtrunA17_Chr7g0217691 | 31.250 | 112 | 74 | 1 | 24 | 132 | 74 | 185 | 6.70e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866280 | AT5G44550.1 | 55.263 | 114 | 51 | 0 | 25 | 138 | 72 | 185 | 2.16e-38 | 129 |
| Msa0866280 | AT4G20390.1 | 54.545 | 110 | 50 | 0 | 25 | 134 | 72 | 181 | 5.66e-28 | 102 |
| Msa0866280 | AT1G14160.1 | 35.185 | 108 | 64 | 3 | 25 | 129 | 98 | 202 | 4.37e-13 | 63.9 |
| Msa0866280 | AT1G03700.1 | 27.434 | 113 | 75 | 2 | 24 | 136 | 53 | 158 | 9.90e-13 | 62.4 |
| Msa0866280 | AT4G03540.1 | 30.526 | 95 | 59 | 2 | 24 | 118 | 53 | 140 | 4.44e-11 | 57.8 |
Find 46 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCCCTGGAGATGTTTCT+TGG | 0.181666 | 5_4:+67803835 | None:intergenic |
| GCCCTTATTGCTTCTTTCAT+TGG | 0.228754 | 5_4:-67802861 | Msa0866280:CDS |
| AAGTCCTTTGTAATCATATT+GGG | 0.274380 | 5_4:+67803161 | None:intergenic |
| GAAGTCCTTTGTAATCATAT+TGG | 0.328703 | 5_4:+67803160 | None:intergenic |
| AGCCAATGAAAGAAGCAATA+AGG | 0.340360 | 5_4:+67802859 | None:intergenic |
| TTTGAAAGCTATTGCAATAG+AGG | 0.418883 | 5_4:-67802891 | Msa0866280:CDS |
| ATGTCAGCATTGGGAAGAAA+TGG | 0.423404 | 5_4:-67802951 | Msa0866280:CDS |
| GAAAGGGATCCATGGGGATC+GGG | 0.424491 | 5_4:-67803817 | Msa0866280:CDS |
| GCCAATGAAAGAAGCAATAA+GGG | 0.431019 | 5_4:+67802860 | None:intergenic |
| TAACTTGGTGATGATTGTAT+TGG | 0.435126 | 5_4:-67803196 | Msa0866280:CDS |
| TTCCTCCAAGAAACATCTCC+AGG | 0.461856 | 5_4:-67803840 | Msa0866280:CDS |
| ATGATTGTATTGGATATGTT+AGG | 0.463140 | 5_4:-67803186 | Msa0866280:CDS |
| ATACAATCATCACCAAGTTA+TGG | 0.469497 | 5_4:+67803199 | None:intergenic |
| GGAGCATGGTTAATGCGATT+AGG | 0.484616 | 5_4:+67802786 | None:intergenic |
| AGCAACATTCATGTCAGCAT+TGG | 0.488005 | 5_4:-67802961 | Msa0866280:CDS |
| ACTATGGCTCTGGCATCAGC+TGG | 0.494373 | 5_4:-67802993 | Msa0866280:CDS |
| GGAAAGGGATCCATGGGGAT+CGG | 0.494403 | 5_4:-67803818 | Msa0866280:CDS |
| GCGATTAGGCTTGAGAAGCT+TGG | 0.494528 | 5_4:+67802800 | None:intergenic |
| GCAACATTCATGTCAGCATT+GGG | 0.495269 | 5_4:-67802960 | Msa0866280:CDS |
| AAATGCTAGTCTCCATAACT+TGG | 0.496794 | 5_4:-67803211 | Msa0866280:CDS |
| CTCCAGGGAAAGGGATCCAT+GGG | 0.497012 | 5_4:-67803824 | Msa0866280:CDS |
| GGTGAAGTTAACTATGGCTC+TGG | 0.500555 | 5_4:-67803003 | Msa0866280:intron |
| TCCCTGGAGATGTTTCTTGG+AGG | 0.509139 | 5_4:+67803838 | None:intergenic |
| ATGTTAATCATATCAAGGAC+TGG | 0.510976 | 5_4:+67802764 | None:intergenic |
| AAGAAACATCTCCAGGGAAA+GGG | 0.511891 | 5_4:-67803833 | Msa0866280:CDS |
| TGGTAATTCACATGCAAGAT+GGG | 0.512674 | 5_4:-67802931 | Msa0866280:CDS |
| TCTCCAGGGAAAGGGATCCA+TGG | 0.517604 | 5_4:-67803825 | Msa0866280:CDS |
| TCCCCATGGATCCCTTTCCC+TGG | 0.521726 | 5_4:+67803822 | None:intergenic |
| ATGGTAATTCACATGCAAGA+TGG | 0.522902 | 5_4:-67802932 | Msa0866280:CDS |
| ATGGAGACTAGCATTTCCAT+TGG | 0.523367 | 5_4:+67803218 | None:intergenic |
| AGGTTCTTTGTGATAGCCAA+TGG | 0.529472 | 5_4:-67803234 | Msa0866280:CDS |
| CAAGAAACATCTCCAGGGAA+AGG | 0.531923 | 5_4:-67803834 | Msa0866280:CDS |
| GCTCTGGCATCAGCTGGAGA+TGG | 0.540036 | 5_4:-67802987 | Msa0866280:CDS |
| CTCTTTCATCCCGATCCCCA+TGG | 0.551810 | 5_4:+67803808 | None:intergenic |
| CATATCAAGGACTGGGAGCA+TGG | 0.559515 | 5_4:+67802772 | None:intergenic |
| TGTTAATCATATCAAGGACT+GGG | 0.560345 | 5_4:+67802765 | None:intergenic |
| AGGCTTGAGAAGCTTGGCAA+TGG | 0.561801 | 5_4:+67802806 | None:intergenic |
| GGATGAAAGAGATGAAGAAG+AGG | 0.577440 | 5_4:-67803796 | Msa0866280:intron |
| CTAAAATTGCAATAAATGCA+AGG | 0.578209 | 5_4:+67803136 | None:intergenic |
| AGCTATTGCAATAGAGGTGG+TGG | 0.598102 | 5_4:-67802885 | Msa0866280:CDS |
| GAAAGCTATTGCAATAGAGG+TGG | 0.619990 | 5_4:-67802888 | Msa0866280:CDS |
| TCACAGTGATAATCAAGAGA+AGG | 0.626568 | 5_4:+67802832 | None:intergenic |
| AGTCCTTTGTAATCATATTG+GGG | 0.628572 | 5_4:+67803162 | None:intergenic |
| TCCTCCAAGAAACATCTCCA+GGG | 0.649476 | 5_4:-67803839 | Msa0866280:CDS |
| GGACCCCAATATGATTACAA+AGG | 0.686673 | 5_4:-67803165 | Msa0866280:CDS |
| TCCAGGGAAAGGGATCCATG+GGG | 0.763415 | 5_4:-67803823 | Msa0866280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTTAATTTTTTTCTT+AGG | - | chr5_4:67803549-67803568 | Msa0866280:intron | 10.0% |
| !!! | AGTTTTTTAATTTTTTTCTT+AGG | - | chr5_4:67803549-67803568 | Msa0866280:intron | 10.0% |
| !!! | TTTTTATAGGTAAATATTAG+TGG | + | chr5_4:67803194-67803213 | None:intergenic | 15.0% |
| !!! | TTTTTATAGGTAAATATTAG+TGG | + | chr5_4:67803194-67803213 | None:intergenic | 15.0% |
| !!! | TTGATTGACATTTTTTTTCT+GGG | + | chr5_4:67802941-67802960 | None:intergenic | 20.0% |
| !!! | TTTGATTGACATTTTTTTTC+TGG | + | chr5_4:67802942-67802961 | None:intergenic | 20.0% |
| !!! | ACACAAAAAAAGTTTTATGT+AGG | - | chr5_4:67803114-67803133 | Msa0866280:intron | 20.0% |
| !!! | AATATTAGTGGTTAATTTGT+CGG | + | chr5_4:67803182-67803201 | None:intergenic | 20.0% |
| !! | TTACCTATAAAAAATGTAAG+AGG | - | chr5_4:67803201-67803220 | Msa0866280:CDS | 20.0% |
| !!! | TTTCCTCTTACATTTTTTAT+AGG | + | chr5_4:67803207-67803226 | None:intergenic | 20.0% |
| !!! | ATTTATTGCAATTTTAGACA+TGG | - | chr5_4:67803491-67803510 | Msa0866280:intron | 20.0% |
| !!! | TTGATTGACATTTTTTTTCT+GGG | + | chr5_4:67802941-67802960 | None:intergenic | 20.0% |
| !!! | TTTGATTGACATTTTTTTTC+TGG | + | chr5_4:67802942-67802961 | None:intergenic | 20.0% |
| !!! | ACACAAAAAAAGTTTTATGT+AGG | - | chr5_4:67803114-67803133 | Msa0866280:intron | 20.0% |
| !!! | AATATTAGTGGTTAATTTGT+CGG | + | chr5_4:67803182-67803201 | None:intergenic | 20.0% |
| !! | TTACCTATAAAAAATGTAAG+AGG | - | chr5_4:67803201-67803220 | Msa0866280:CDS | 20.0% |
| !!! | TTTCCTCTTACATTTTTTAT+AGG | + | chr5_4:67803207-67803226 | None:intergenic | 20.0% |
| !!! | ATTTATTGCAATTTTAGACA+TGG | - | chr5_4:67803491-67803510 | Msa0866280:intron | 20.0% |
| !!! | AGAAGAGGTTAAAAAGTATT+TGG | - | chr5_4:67802840-67802859 | Msa0866280:CDS | 25.0% |
| ! | TAAGTAAAAATGAAAGTCTC+TGG | + | chr5_4:67802915-67802934 | None:intergenic | 25.0% |
| !!! | TGATTGACATTTTTTTTCTG+GGG | + | chr5_4:67802940-67802959 | None:intergenic | 25.0% |
| ! | AACGAACATAAATAGAAAAG+AGG | + | chr5_4:67803026-67803045 | None:intergenic | 25.0% |
| !!! | CAAAAAAAGTTTTATGTAGG+AGG | - | chr5_4:67803117-67803136 | Msa0866280:intron | 25.0% |
| !!! | ATATTAGTGGTTAATTTGTC+GGG | + | chr5_4:67803181-67803200 | None:intergenic | 25.0% |
| ! | AATTTCATCGCTTAATTCAA+AGG | - | chr5_4:67803259-67803278 | Msa0866280:intron | 25.0% |
| ! | TTACATTAACACATCATTGT+AGG | - | chr5_4:67803357-67803376 | Msa0866280:intron | 25.0% |
| ! | TACATTAACACATCATTGTA+GGG | - | chr5_4:67803358-67803377 | Msa0866280:intron | 25.0% |
| ! | ATGATTGTATTGGATATGTT+AGG | - | chr5_4:67803435-67803454 | Msa0866280:intron | 25.0% |
| ! | AAGTCCTTTGTAATCATATT+GGG | + | chr5_4:67803463-67803482 | None:intergenic | 25.0% |
| ! | CTAAAATTGCAATAAATGCA+AGG | + | chr5_4:67803488-67803507 | None:intergenic | 25.0% |
| !!! | AGAAGAGGTTAAAAAGTATT+TGG | - | chr5_4:67802840-67802859 | Msa0866280:CDS | 25.0% |
| ! | TAAGTAAAAATGAAAGTCTC+TGG | + | chr5_4:67802915-67802934 | None:intergenic | 25.0% |
| !!! | TGATTGACATTTTTTTTCTG+GGG | + | chr5_4:67802940-67802959 | None:intergenic | 25.0% |
| ! | AACGAACATAAATAGAAAAG+AGG | + | chr5_4:67803026-67803045 | None:intergenic | 25.0% |
| !!! | CAAAAAAAGTTTTATGTAGG+AGG | - | chr5_4:67803117-67803136 | Msa0866280:intron | 25.0% |
| !!! | ATATTAGTGGTTAATTTGTC+GGG | + | chr5_4:67803181-67803200 | None:intergenic | 25.0% |
| ! | AATTTCATCGCTTAATTCAA+AGG | - | chr5_4:67803259-67803278 | Msa0866280:intron | 25.0% |
| ! | TTACATTAACACATCATTGT+AGG | - | chr5_4:67803357-67803376 | Msa0866280:intron | 25.0% |
| ! | TACATTAACACATCATTGTA+GGG | - | chr5_4:67803358-67803377 | Msa0866280:intron | 25.0% |
| ! | ATGATTGTATTGGATATGTT+AGG | - | chr5_4:67803435-67803454 | Msa0866280:intron | 25.0% |
| ! | AAGTCCTTTGTAATCATATT+GGG | + | chr5_4:67803463-67803482 | None:intergenic | 25.0% |
| ! | CTAAAATTGCAATAAATGCA+AGG | + | chr5_4:67803488-67803507 | None:intergenic | 25.0% |
| !! | TATTAGTGGTTAATTTGTCG+GGG | + | chr5_4:67803180-67803199 | None:intergenic | 30.0% |
| TGTAAGAGGAAAATAGAGAA+AGG | - | chr5_4:67803215-67803234 | Msa0866280:CDS | 30.0% | |
| ATACAATCATCACCAAGTTA+TGG | + | chr5_4:67803425-67803444 | None:intergenic | 30.0% | |
| !! | TAACTTGGTGATGATTGTAT+TGG | - | chr5_4:67803425-67803444 | Msa0866280:intron | 30.0% |
| AGTCCTTTGTAATCATATTG+GGG | + | chr5_4:67803462-67803481 | None:intergenic | 30.0% | |
| GAAGTCCTTTGTAATCATAT+TGG | + | chr5_4:67803464-67803483 | None:intergenic | 30.0% | |
| !!! | TTTTTGGGTGAAGTTAACTA+TGG | - | chr5_4:67803612-67803631 | Msa0866280:intron | 30.0% |
| TTTGAAAGCTATTGCAATAG+AGG | - | chr5_4:67803730-67803749 | Msa0866280:intron | 30.0% | |
| !! | TATTAGTGGTTAATTTGTCG+GGG | + | chr5_4:67803180-67803199 | None:intergenic | 30.0% |
| TGTAAGAGGAAAATAGAGAA+AGG | - | chr5_4:67803215-67803234 | Msa0866280:CDS | 30.0% | |
| ATACAATCATCACCAAGTTA+TGG | + | chr5_4:67803425-67803444 | None:intergenic | 30.0% | |
| !! | TAACTTGGTGATGATTGTAT+TGG | - | chr5_4:67803425-67803444 | Msa0866280:intron | 30.0% |
| AGTCCTTTGTAATCATATTG+GGG | + | chr5_4:67803462-67803481 | None:intergenic | 30.0% | |
| GAAGTCCTTTGTAATCATAT+TGG | + | chr5_4:67803464-67803483 | None:intergenic | 30.0% | |
| !!! | TTTTTGGGTGAAGTTAACTA+TGG | - | chr5_4:67803612-67803631 | Msa0866280:intron | 30.0% |
| TTTGAAAGCTATTGCAATAG+AGG | - | chr5_4:67803730-67803749 | Msa0866280:intron | 30.0% | |
| TAGTAGAAGAGGTCGAATTT+CGG | + | chr5_4:67803144-67803163 | None:intergenic | 35.0% | |
| !! | ATTAGTGGTTAATTTGTCGG+GGG | + | chr5_4:67803179-67803198 | None:intergenic | 35.0% |
| ! | AAATGCTAGTCTCCATAACT+TGG | - | chr5_4:67803410-67803429 | Msa0866280:intron | 35.0% |
| ATGGTAATTCACATGCAAGA+TGG | - | chr5_4:67803689-67803708 | Msa0866280:intron | 35.0% | |
| TGGTAATTCACATGCAAGAT+GGG | - | chr5_4:67803690-67803709 | Msa0866280:intron | 35.0% | |
| GCCAATGAAAGAAGCAATAA+GGG | + | chr5_4:67803764-67803783 | None:intergenic | 35.0% | |
| AGCCAATGAAAGAAGCAATA+AGG | + | chr5_4:67803765-67803784 | None:intergenic | 35.0% | |
| TCACAGTGATAATCAAGAGA+AGG | + | chr5_4:67803792-67803811 | None:intergenic | 35.0% | |
| TAGTAGAAGAGGTCGAATTT+CGG | + | chr5_4:67803144-67803163 | None:intergenic | 35.0% | |
| !! | ATTAGTGGTTAATTTGTCGG+GGG | + | chr5_4:67803179-67803198 | None:intergenic | 35.0% |
| ! | AAATGCTAGTCTCCATAACT+TGG | - | chr5_4:67803410-67803429 | Msa0866280:intron | 35.0% |
| ATGGTAATTCACATGCAAGA+TGG | - | chr5_4:67803689-67803708 | Msa0866280:intron | 35.0% | |
| TGGTAATTCACATGCAAGAT+GGG | - | chr5_4:67803690-67803709 | Msa0866280:intron | 35.0% | |
| GCCAATGAAAGAAGCAATAA+GGG | + | chr5_4:67803764-67803783 | None:intergenic | 35.0% | |
| AGCCAATGAAAGAAGCAATA+AGG | + | chr5_4:67803765-67803784 | None:intergenic | 35.0% | |
| TCACAGTGATAATCAAGAGA+AGG | + | chr5_4:67803792-67803811 | None:intergenic | 35.0% | |
| AAGAAACATCTCCAGGGAAA+GGG | - | chr5_4:67802788-67802807 | Msa0866280:CDS | 40.0% | |
| GGATGAAAGAGATGAAGAAG+AGG | - | chr5_4:67802825-67802844 | Msa0866280:CDS | 40.0% | |
| ATACGATTGGACTACTCGTT+CGG | + | chr5_4:67803086-67803105 | None:intergenic | 40.0% | |
| TGTGTCTGAATCGATACGAT+TGG | + | chr5_4:67803099-67803118 | None:intergenic | 40.0% | |
| GAGAGAGTTGTTAGTAGAAG+AGG | + | chr5_4:67803155-67803174 | None:intergenic | 40.0% | |
| ACATCATTGTAGGGTGAAAC+AGG | - | chr5_4:67803367-67803386 | Msa0866280:intron | 40.0% | |
| AGGTTCTTTGTGATAGCCAA+TGG | - | chr5_4:67803387-67803406 | Msa0866280:intron | 40.0% | |
| ATGGAGACTAGCATTTCCAT+TGG | + | chr5_4:67803406-67803425 | None:intergenic | 40.0% | |
| GGACCCCAATATGATTACAA+AGG | - | chr5_4:67803456-67803475 | Msa0866280:intron | 40.0% | |
| AGCAACATTCATGTCAGCAT+TGG | - | chr5_4:67803660-67803679 | Msa0866280:intron | 40.0% | |
| GCAACATTCATGTCAGCATT+GGG | - | chr5_4:67803661-67803680 | Msa0866280:intron | 40.0% | |
| ! | ATGTCAGCATTGGGAAGAAA+TGG | - | chr5_4:67803670-67803689 | Msa0866280:intron | 40.0% |
| GAAAGCTATTGCAATAGAGG+TGG | - | chr5_4:67803733-67803752 | Msa0866280:intron | 40.0% | |
| GCCCTTATTGCTTCTTTCAT+TGG | - | chr5_4:67803760-67803779 | Msa0866280:intron | 40.0% | |
| AAGAAACATCTCCAGGGAAA+GGG | - | chr5_4:67802788-67802807 | Msa0866280:CDS | 40.0% | |
| GGATGAAAGAGATGAAGAAG+AGG | - | chr5_4:67802825-67802844 | Msa0866280:CDS | 40.0% | |
| ATACGATTGGACTACTCGTT+CGG | + | chr5_4:67803086-67803105 | None:intergenic | 40.0% | |
| TGTGTCTGAATCGATACGAT+TGG | + | chr5_4:67803099-67803118 | None:intergenic | 40.0% | |
| GAGAGAGTTGTTAGTAGAAG+AGG | + | chr5_4:67803155-67803174 | None:intergenic | 40.0% | |
| ACATCATTGTAGGGTGAAAC+AGG | - | chr5_4:67803367-67803386 | Msa0866280:intron | 40.0% | |
| AGGTTCTTTGTGATAGCCAA+TGG | - | chr5_4:67803387-67803406 | Msa0866280:intron | 40.0% | |
| ATGGAGACTAGCATTTCCAT+TGG | + | chr5_4:67803406-67803425 | None:intergenic | 40.0% | |
| GGACCCCAATATGATTACAA+AGG | - | chr5_4:67803456-67803475 | Msa0866280:intron | 40.0% | |
| AGCAACATTCATGTCAGCAT+TGG | - | chr5_4:67803660-67803679 | Msa0866280:intron | 40.0% | |
| GCAACATTCATGTCAGCATT+GGG | - | chr5_4:67803661-67803680 | Msa0866280:intron | 40.0% | |
| ! | ATGTCAGCATTGGGAAGAAA+TGG | - | chr5_4:67803670-67803689 | Msa0866280:intron | 40.0% |
| GAAAGCTATTGCAATAGAGG+TGG | - | chr5_4:67803733-67803752 | Msa0866280:intron | 40.0% | |
| GCCCTTATTGCTTCTTTCAT+TGG | - | chr5_4:67803760-67803779 | Msa0866280:intron | 40.0% | |
| TTCCTCCAAGAAACATCTCC+AGG | - | chr5_4:67802781-67802800 | Msa0866280:CDS | 45.0% | |
| TCCTCCAAGAAACATCTCCA+GGG | - | chr5_4:67802782-67802801 | Msa0866280:CDS | 45.0% | |
| CTTTCCCTGGAGATGTTTCT+TGG | + | chr5_4:67802789-67802808 | None:intergenic | 45.0% | |
| CAAGAAACATCTCCAGGGAA+AGG | - | chr5_4:67802787-67802806 | Msa0866280:CDS | 45.0% | |
| !! | TTGGTGATGAAGCAAGCTAG+AGG | - | chr5_4:67802859-67802878 | Msa0866280:CDS | 45.0% |
| ! | TGGTGATGAAGCAAGCTAGA+GGG | - | chr5_4:67802860-67802879 | Msa0866280:CDS | 45.0% |
| AGAAGACGGTGAACAGTAAC+TGG | - | chr5_4:67802883-67802902 | Msa0866280:CDS | 45.0% | |
| TACGATTGGACTACTCGTTC+GGG | + | chr5_4:67803085-67803104 | None:intergenic | 45.0% | |
| GGTGAAGTTAACTATGGCTC+TGG | - | chr5_4:67803618-67803637 | Msa0866280:intron | 45.0% | |
| AGCTATTGCAATAGAGGTGG+TGG | - | chr5_4:67803736-67803755 | Msa0866280:intron | 45.0% | |
| GGAGCATGGTTAATGCGATT+AGG | + | chr5_4:67803838-67803857 | None:intergenic | 45.0% | |
| TTCCTCCAAGAAACATCTCC+AGG | - | chr5_4:67802781-67802800 | Msa0866280:CDS | 45.0% | |
| TCCTCCAAGAAACATCTCCA+GGG | - | chr5_4:67802782-67802801 | Msa0866280:CDS | 45.0% | |
| CTTTCCCTGGAGATGTTTCT+TGG | + | chr5_4:67802789-67802808 | None:intergenic | 45.0% | |
| CAAGAAACATCTCCAGGGAA+AGG | - | chr5_4:67802787-67802806 | Msa0866280:CDS | 45.0% | |
| !! | TTGGTGATGAAGCAAGCTAG+AGG | - | chr5_4:67802859-67802878 | Msa0866280:CDS | 45.0% |
| ! | TGGTGATGAAGCAAGCTAGA+GGG | - | chr5_4:67802860-67802879 | Msa0866280:CDS | 45.0% |
| AGAAGACGGTGAACAGTAAC+TGG | - | chr5_4:67802883-67802902 | Msa0866280:CDS | 45.0% | |
| TACGATTGGACTACTCGTTC+GGG | + | chr5_4:67803085-67803104 | None:intergenic | 45.0% | |
| GGTGAAGTTAACTATGGCTC+TGG | - | chr5_4:67803618-67803637 | Msa0866280:intron | 45.0% | |
| AGCTATTGCAATAGAGGTGG+TGG | - | chr5_4:67803736-67803755 | Msa0866280:intron | 45.0% | |
| GGAGCATGGTTAATGCGATT+AGG | + | chr5_4:67803838-67803857 | None:intergenic | 45.0% | |
| !!! | TTTGATAAATAATATTTTTT+TGG | - | chr5_4:67803596-67803615 | Msa0866280:intron | 5.0% |
| !!! | TTGATAAATAATATTTTTTT+GGG | - | chr5_4:67803597-67803616 | Msa0866280:intron | 5.0% |
| !!! | TTTGATAAATAATATTTTTT+TGG | - | chr5_4:67803596-67803615 | Msa0866280:intron | 5.0% |
| !!! | TTGATAAATAATATTTTTTT+GGG | - | chr5_4:67803597-67803616 | Msa0866280:intron | 5.0% |
| TCCCTGGAGATGTTTCTTGG+AGG | + | chr5_4:67802786-67802805 | None:intergenic | 50.0% | |
| AGCAAGCTAGAGGGAGAAGA+CGG | - | chr5_4:67802869-67802888 | Msa0866280:CDS | 50.0% | |
| ACGATTGGACTACTCGTTCG+GGG | + | chr5_4:67803084-67803103 | None:intergenic | 50.0% | |
| AGGCTTGAGAAGCTTGGCAA+TGG | + | chr5_4:67803818-67803837 | None:intergenic | 50.0% | |
| GCGATTAGGCTTGAGAAGCT+TGG | + | chr5_4:67803824-67803843 | None:intergenic | 50.0% | |
| TCCCTGGAGATGTTTCTTGG+AGG | + | chr5_4:67802786-67802805 | None:intergenic | 50.0% | |
| AGCAAGCTAGAGGGAGAAGA+CGG | - | chr5_4:67802869-67802888 | Msa0866280:CDS | 50.0% | |
| ACGATTGGACTACTCGTTCG+GGG | + | chr5_4:67803084-67803103 | None:intergenic | 50.0% | |
| AGGCTTGAGAAGCTTGGCAA+TGG | + | chr5_4:67803818-67803837 | None:intergenic | 50.0% | |
| GCGATTAGGCTTGAGAAGCT+TGG | + | chr5_4:67803824-67803843 | None:intergenic | 50.0% | |
| TCTCCAGGGAAAGGGATCCA+TGG | - | chr5_4:67802796-67802815 | Msa0866280:CDS | 55.0% | |
| CTCCAGGGAAAGGGATCCAT+GGG | - | chr5_4:67802797-67802816 | Msa0866280:CDS | 55.0% | |
| TCCAGGGAAAGGGATCCATG+GGG | - | chr5_4:67802798-67802817 | Msa0866280:CDS | 55.0% | |
| GGAAAGGGATCCATGGGGAT+CGG | - | chr5_4:67802803-67802822 | Msa0866280:CDS | 55.0% | |
| GAAAGGGATCCATGGGGATC+GGG | - | chr5_4:67802804-67802823 | Msa0866280:CDS | 55.0% | |
| CTCTTTCATCCCGATCCCCA+TGG | + | chr5_4:67802816-67802835 | None:intergenic | 55.0% | |
| CGATTGGACTACTCGTTCGG+GGG | + | chr5_4:67803083-67803102 | None:intergenic | 55.0% | |
| !! | ACTATGGCTCTGGCATCAGC+TGG | - | chr5_4:67803628-67803647 | Msa0866280:intron | 55.0% |
| TCTCCAGGGAAAGGGATCCA+TGG | - | chr5_4:67802796-67802815 | Msa0866280:CDS | 55.0% | |
| CTCCAGGGAAAGGGATCCAT+GGG | - | chr5_4:67802797-67802816 | Msa0866280:CDS | 55.0% | |
| TCCAGGGAAAGGGATCCATG+GGG | - | chr5_4:67802798-67802817 | Msa0866280:CDS | 55.0% | |
| GGAAAGGGATCCATGGGGAT+CGG | - | chr5_4:67802803-67802822 | Msa0866280:CDS | 55.0% | |
| GAAAGGGATCCATGGGGATC+GGG | - | chr5_4:67802804-67802823 | Msa0866280:CDS | 55.0% | |
| CTCTTTCATCCCGATCCCCA+TGG | + | chr5_4:67802816-67802835 | None:intergenic | 55.0% | |
| CGATTGGACTACTCGTTCGG+GGG | + | chr5_4:67803083-67803102 | None:intergenic | 55.0% | |
| !! | ACTATGGCTCTGGCATCAGC+TGG | - | chr5_4:67803628-67803647 | Msa0866280:intron | 55.0% |
| TCCCCATGGATCCCTTTCCC+TGG | + | chr5_4:67802802-67802821 | None:intergenic | 60.0% | |
| GCTCTGGCATCAGCTGGAGA+TGG | - | chr5_4:67803634-67803653 | Msa0866280:intron | 60.0% | |
| TCCCCATGGATCCCTTTCCC+TGG | + | chr5_4:67802802-67802821 | None:intergenic | 60.0% | |
| GCTCTGGCATCAGCTGGAGA+TGG | - | chr5_4:67803634-67803653 | Msa0866280:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 67802776 | 67803867 | 67802776 | ID=Msa0866280;Name=Msa0866280 |
| chr5_4 | mRNA | 67802776 | 67803867 | 67802776 | ID=Msa0866280-mRNA-1;Parent=Msa0866280;Name=Msa0866280-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|0.66|1|1|3|0|145 |
| chr5_4 | exon | 67803797 | 67803867 | 67803797 | ID=Msa0866280-mRNA-1:exon:21441;Parent=Msa0866280-mRNA-1 |
| chr5_4 | exon | 67803131 | 67803254 | 67803131 | ID=Msa0866280-mRNA-1:exon:21440;Parent=Msa0866280-mRNA-1 |
| chr5_4 | exon | 67802776 | 67803018 | 67802776 | ID=Msa0866280-mRNA-1:exon:21439;Parent=Msa0866280-mRNA-1 |
| chr5_4 | CDS | 67803797 | 67803867 | 67803797 | ID=Msa0866280-mRNA-1:cds;Parent=Msa0866280-mRNA-1 |
| chr5_4 | CDS | 67803131 | 67803254 | 67803131 | ID=Msa0866280-mRNA-1:cds;Parent=Msa0866280-mRNA-1 |
| chr5_4 | CDS | 67802776 | 67803018 | 67802776 | ID=Msa0866280-mRNA-1:cds;Parent=Msa0866280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
