Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866260 | MCH84034.1 | 96.694 | 121 | 4 | 0 | 25 | 145 | 81 | 201 | 8.89e-80 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866260 | sp|C6TG62|CSPL9_SOYBN | 75.652 | 115 | 28 | 0 | 25 | 139 | 80 | 194 | 9.87e-61 | 188 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866260 | A0A392MCN9 | 96.694 | 121 | 4 | 0 | 25 | 145 | 81 | 201 | 4.25e-80 | 244 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0658150 | Msa0866260 | 0.820643 | 6.153034e-53 | -8.615850e-47 |
| Msa0685390 | Msa0866260 | -0.802125 | 6.507210e-49 | -8.615850e-47 |
| Msa0703000 | Msa0866260 | 0.823609 | 1.263361e-53 | -8.615850e-47 |
| Msa0730890 | Msa0866260 | 0.808788 | 2.607837e-50 | -8.615850e-47 |
| Msa0807270 | Msa0866260 | 0.993705 | 1.266066e-201 | -8.615850e-47 |
| Msa0812720 | Msa0866260 | 0.817829 | 2.691248e-52 | -8.615850e-47 |
| Msa0130360 | Msa0866260 | 0.812329 | 4.477345e-51 | -8.615850e-47 |
| Msa0188560 | Msa0866260 | 0.811726 | 6.060747e-51 | -8.615850e-47 |
| Msa0189990 | Msa0866260 | 0.821793 | 3.342348e-53 | -8.615850e-47 |
| Msa0230920 | Msa0866260 | 0.821227 | 4.516848e-53 | -8.615850e-47 |
| Msa0463820 | Msa0866260 | -0.809212 | 2.115506e-50 | -8.615850e-47 |
| Msa0247780 | Msa0866260 | 0.873806 | 1.104998e-67 | -8.615850e-47 |
| Msa0325260 | Msa0866260 | 0.869160 | 3.813137e-66 | -8.615850e-47 |
| Msa0336430 | Msa0866260 | 0.803469 | 3.435395e-49 | -8.615850e-47 |
| Msa0336460 | Msa0866260 | 0.805146 | 1.536537e-49 | -8.615850e-47 |
| Msa0336520 | Msa0866260 | 0.801214 | 1.000791e-48 | -8.615850e-47 |
| Msa0568920 | Msa0866260 | 0.808904 | 2.463002e-50 | -8.615850e-47 |
| Msa0853080 | Msa0866260 | 0.813673 | 2.271898e-51 | -8.615850e-47 |
| Msa0866260 | Msa0866280 | 0.988985 | 3.241608e-176 | -8.615850e-47 |
| Msa0866260 | Msa1111910 | 0.812714 | 3.689826e-51 | -8.615850e-47 |
| Msa0866260 | Msa1273320 | 0.807670 | 4.512389e-50 | -8.615850e-47 |
| Msa0866260 | Msa1290090 | -0.804024 | 2.633810e-49 | -8.615850e-47 |
| Msa0866260 | Msa1339530 | 0.809180 | 2.148846e-50 | -8.615850e-47 |
| Msa0866260 | Msa1362590 | 0.815267 | 1.008879e-51 | -8.615850e-47 |
| Msa0866260 | Msa1384130 | 0.856410 | 3.279566e-62 | -8.615850e-47 |
| Msa0866260 | Msa1387100 | -0.803066 | 4.161544e-49 | -8.615850e-47 |
| Msa0866260 | Msa1395080 | 0.823899 | 1.080176e-53 | -8.615850e-47 |
| Msa0866260 | Msa1425810 | 0.969246 | 7.674262e-130 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866260 | MtrunA17_Chr2g0303151 | 96.694 | 121 | 4 | 0 | 25 | 145 | 81 | 201 | 1.28e-83 | 244 |
| Msa0866260 | MtrunA17_Chr8g0381001 | 74.561 | 114 | 29 | 0 | 25 | 138 | 80 | 193 | 4.72e-51 | 161 |
| Msa0866260 | MtrunA17_Chr4g0021111 | 31.858 | 113 | 70 | 1 | 24 | 136 | 52 | 157 | 8.21e-14 | 64.7 |
| Msa0866260 | MtrunA17_Chr7g0268681 | 33.028 | 109 | 72 | 1 | 25 | 133 | 78 | 185 | 1.13e-13 | 65.1 |
| Msa0866260 | MtrunA17_Chr4g0066721 | 36.559 | 93 | 54 | 2 | 25 | 115 | 88 | 177 | 1.31e-13 | 65.1 |
| Msa0866260 | MtrunA17_Chr7g0217691 | 31.250 | 112 | 74 | 1 | 24 | 132 | 74 | 185 | 6.70e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866260 | AT5G44550.1 | 55.263 | 114 | 51 | 0 | 25 | 138 | 72 | 185 | 2.16e-38 | 129 |
| Msa0866260 | AT4G20390.1 | 54.545 | 110 | 50 | 0 | 25 | 134 | 72 | 181 | 5.66e-28 | 102 |
| Msa0866260 | AT1G14160.1 | 35.185 | 108 | 64 | 3 | 25 | 129 | 98 | 202 | 4.37e-13 | 63.9 |
| Msa0866260 | AT1G03700.1 | 27.434 | 113 | 75 | 2 | 24 | 136 | 53 | 158 | 9.90e-13 | 62.4 |
| Msa0866260 | AT4G03540.1 | 30.526 | 95 | 59 | 2 | 24 | 118 | 53 | 140 | 4.44e-11 | 57.8 |
Find 46 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCCCTGGAGATGTTTCT+TGG | 0.181666 | 5_4:+67742746 | None:intergenic |
| GCCCTTATTGCTTCTTTCAT+TGG | 0.228754 | 5_4:-67741773 | Msa0866260:CDS |
| AAGTCCTTTGTAATCATATT+GGG | 0.274380 | 5_4:+67742073 | None:intergenic |
| GAAGTCCTTTGTAATCATAT+TGG | 0.328703 | 5_4:+67742072 | None:intergenic |
| AGCCAATGAAAGAAGCAATA+AGG | 0.340360 | 5_4:+67741771 | None:intergenic |
| TTTGAAAGCTATTGCAATAG+AGG | 0.418883 | 5_4:-67741803 | Msa0866260:CDS |
| ATGTCAGCATTGGGAAGAAA+TGG | 0.423404 | 5_4:-67741863 | Msa0866260:CDS |
| GAAAGGGATCCATGGGGATC+GGG | 0.424491 | 5_4:-67742728 | Msa0866260:CDS |
| GCCAATGAAAGAAGCAATAA+GGG | 0.431019 | 5_4:+67741772 | None:intergenic |
| TAACTTGGTGATGATTGTAT+TGG | 0.435126 | 5_4:-67742108 | Msa0866260:CDS |
| TTCCTCCAAGAAACATCTCC+AGG | 0.461856 | 5_4:-67742751 | Msa0866260:CDS |
| ATGATTGTATTGGATATGTT+AGG | 0.463140 | 5_4:-67742098 | Msa0866260:CDS |
| ATACAATCATCACCAAGTTA+TGG | 0.469497 | 5_4:+67742111 | None:intergenic |
| GGAGCATGGTTAATGCGATT+AGG | 0.484616 | 5_4:+67741698 | None:intergenic |
| AGCAACATTCATGTCAGCAT+TGG | 0.488005 | 5_4:-67741873 | Msa0866260:CDS |
| ACTATGGCTCTGGCATCAGC+TGG | 0.494373 | 5_4:-67741905 | Msa0866260:CDS |
| GGAAAGGGATCCATGGGGAT+CGG | 0.494403 | 5_4:-67742729 | Msa0866260:CDS |
| GCGATTAGGCTTGAGAAGCT+TGG | 0.494528 | 5_4:+67741712 | None:intergenic |
| GCAACATTCATGTCAGCATT+GGG | 0.495269 | 5_4:-67741872 | Msa0866260:CDS |
| AAATGCTAGTCTCCATAACT+TGG | 0.496794 | 5_4:-67742123 | Msa0866260:CDS |
| CTCCAGGGAAAGGGATCCAT+GGG | 0.497012 | 5_4:-67742735 | Msa0866260:CDS |
| GGTGAAGTTAACTATGGCTC+TGG | 0.500555 | 5_4:-67741915 | Msa0866260:intron |
| TCCCTGGAGATGTTTCTTGG+AGG | 0.509139 | 5_4:+67742749 | None:intergenic |
| ATGTTAATCATATCAAGGAC+TGG | 0.510976 | 5_4:+67741676 | None:intergenic |
| AAGAAACATCTCCAGGGAAA+GGG | 0.511891 | 5_4:-67742744 | Msa0866260:CDS |
| TGGTAATTCACATGCAAGAT+GGG | 0.512674 | 5_4:-67741843 | Msa0866260:CDS |
| TCTCCAGGGAAAGGGATCCA+TGG | 0.517604 | 5_4:-67742736 | Msa0866260:CDS |
| TCCCCATGGATCCCTTTCCC+TGG | 0.521726 | 5_4:+67742733 | None:intergenic |
| ATGGTAATTCACATGCAAGA+TGG | 0.522902 | 5_4:-67741844 | Msa0866260:CDS |
| ATGGAGACTAGCATTTCCAT+TGG | 0.523367 | 5_4:+67742130 | None:intergenic |
| AGGTTCTTTGTGATAGCCAA+TGG | 0.529472 | 5_4:-67742146 | Msa0866260:CDS |
| CAAGAAACATCTCCAGGGAA+AGG | 0.531923 | 5_4:-67742745 | Msa0866260:CDS |
| GCTCTGGCATCAGCTGGAGA+TGG | 0.540036 | 5_4:-67741899 | Msa0866260:CDS |
| CTCTTTCATCCCGATCCCCA+TGG | 0.551810 | 5_4:+67742719 | None:intergenic |
| CATATCAAGGACTGGGAGCA+TGG | 0.559515 | 5_4:+67741684 | None:intergenic |
| TGTTAATCATATCAAGGACT+GGG | 0.560345 | 5_4:+67741677 | None:intergenic |
| AGGCTTGAGAAGCTTGGCAA+TGG | 0.561801 | 5_4:+67741718 | None:intergenic |
| GGATGAAAGAGATGAAGAAG+AGG | 0.577440 | 5_4:-67742707 | Msa0866260:intron |
| CTAAAATTGCAATAAATGCA+AGG | 0.578209 | 5_4:+67742048 | None:intergenic |
| AGCTATTGCAATAGAGGTGG+TGG | 0.598102 | 5_4:-67741797 | Msa0866260:CDS |
| GAAAGCTATTGCAATAGAGG+TGG | 0.619990 | 5_4:-67741800 | Msa0866260:CDS |
| TCACAGTGATAATCAAGAGA+AGG | 0.626568 | 5_4:+67741744 | None:intergenic |
| AGTCCTTTGTAATCATATTG+GGG | 0.628572 | 5_4:+67742074 | None:intergenic |
| TCCTCCAAGAAACATCTCCA+GGG | 0.649476 | 5_4:-67742750 | Msa0866260:CDS |
| GGACCCCAATATGATTACAA+AGG | 0.686673 | 5_4:-67742077 | Msa0866260:CDS |
| TCCAGGGAAAGGGATCCATG+GGG | 0.763415 | 5_4:-67742734 | Msa0866260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTTAATTTTTTTCTT+AGG | - | chr5_4:67742460-67742479 | Msa0866260:intron | 10.0% |
| !!! | AGTTTTTTAATTTTTTTCTT+AGG | - | chr5_4:67742460-67742479 | Msa0866260:intron | 10.0% |
| !!! | TTTTTATAGGTAAATATTAG+TGG | + | chr5_4:67742105-67742124 | None:intergenic | 15.0% |
| !!! | TTTTTATAGGTAAATATTAG+TGG | + | chr5_4:67742105-67742124 | None:intergenic | 15.0% |
| !!! | TTTGATTGACATTTTTTTCT+GGG | + | chr5_4:67741853-67741872 | None:intergenic | 20.0% |
| !!! | ACACAAAAAAAGTTTTATGT+AGG | - | chr5_4:67742025-67742044 | Msa0866260:intron | 20.0% |
| !!! | AATATTAGTGGTTAATTTGT+CGG | + | chr5_4:67742093-67742112 | None:intergenic | 20.0% |
| !! | TTACCTATAAAAAATGTAAG+AGG | - | chr5_4:67742112-67742131 | Msa0866260:CDS | 20.0% |
| !!! | TTTCCTCTTACATTTTTTAT+AGG | + | chr5_4:67742118-67742137 | None:intergenic | 20.0% |
| !!! | ATTTATTGCAATTTTAGACA+TGG | - | chr5_4:67742402-67742421 | Msa0866260:intron | 20.0% |
| !!! | TTTGATTGACATTTTTTTCT+GGG | + | chr5_4:67741853-67741872 | None:intergenic | 20.0% |
| !!! | ACACAAAAAAAGTTTTATGT+AGG | - | chr5_4:67742025-67742044 | Msa0866260:intron | 20.0% |
| !!! | AATATTAGTGGTTAATTTGT+CGG | + | chr5_4:67742093-67742112 | None:intergenic | 20.0% |
| !! | TTACCTATAAAAAATGTAAG+AGG | - | chr5_4:67742112-67742131 | Msa0866260:CDS | 20.0% |
| !!! | TTTCCTCTTACATTTTTTAT+AGG | + | chr5_4:67742118-67742137 | None:intergenic | 20.0% |
| !!! | ATTTATTGCAATTTTAGACA+TGG | - | chr5_4:67742402-67742421 | Msa0866260:intron | 20.0% |
| !!! | AGAAGAGGTTAAAAAGTATT+TGG | - | chr5_4:67741752-67741771 | Msa0866260:CDS | 25.0% |
| ! | TAAGTAAAAATGAAAGTCTC+TGG | + | chr5_4:67741827-67741846 | None:intergenic | 25.0% |
| !!! | TTGATTGACATTTTTTTCTG+GGG | + | chr5_4:67741852-67741871 | None:intergenic | 25.0% |
| !!! | GTTTGATTGACATTTTTTTC+TGG | + | chr5_4:67741854-67741873 | None:intergenic | 25.0% |
| ! | AACGAACATAAATAGAAAAG+AGG | + | chr5_4:67741937-67741956 | None:intergenic | 25.0% |
| !!! | CAAAAAAAGTTTTATGTAGG+AGG | - | chr5_4:67742028-67742047 | Msa0866260:intron | 25.0% |
| !!! | ATATTAGTGGTTAATTTGTC+GGG | + | chr5_4:67742092-67742111 | None:intergenic | 25.0% |
| ! | AATTTCATCGCTTAATTCAA+AGG | - | chr5_4:67742170-67742189 | Msa0866260:intron | 25.0% |
| ! | TTACATTAACACATCATTGT+AGG | - | chr5_4:67742268-67742287 | Msa0866260:intron | 25.0% |
| ! | TACATTAACACATCATTGTA+GGG | - | chr5_4:67742269-67742288 | Msa0866260:intron | 25.0% |
| ! | ATGATTGTATTGGATATGTT+AGG | - | chr5_4:67742346-67742365 | Msa0866260:intron | 25.0% |
| ! | AAGTCCTTTGTAATCATATT+GGG | + | chr5_4:67742374-67742393 | None:intergenic | 25.0% |
| ! | CTAAAATTGCAATAAATGCA+AGG | + | chr5_4:67742399-67742418 | None:intergenic | 25.0% |
| !!! | AGAAGAGGTTAAAAAGTATT+TGG | - | chr5_4:67741752-67741771 | Msa0866260:CDS | 25.0% |
| ! | TAAGTAAAAATGAAAGTCTC+TGG | + | chr5_4:67741827-67741846 | None:intergenic | 25.0% |
| !!! | TTGATTGACATTTTTTTCTG+GGG | + | chr5_4:67741852-67741871 | None:intergenic | 25.0% |
| !!! | GTTTGATTGACATTTTTTTC+TGG | + | chr5_4:67741854-67741873 | None:intergenic | 25.0% |
| ! | AACGAACATAAATAGAAAAG+AGG | + | chr5_4:67741937-67741956 | None:intergenic | 25.0% |
| !!! | CAAAAAAAGTTTTATGTAGG+AGG | - | chr5_4:67742028-67742047 | Msa0866260:intron | 25.0% |
| !!! | ATATTAGTGGTTAATTTGTC+GGG | + | chr5_4:67742092-67742111 | None:intergenic | 25.0% |
| ! | AATTTCATCGCTTAATTCAA+AGG | - | chr5_4:67742170-67742189 | Msa0866260:intron | 25.0% |
| ! | TTACATTAACACATCATTGT+AGG | - | chr5_4:67742268-67742287 | Msa0866260:intron | 25.0% |
| ! | TACATTAACACATCATTGTA+GGG | - | chr5_4:67742269-67742288 | Msa0866260:intron | 25.0% |
| ! | ATGATTGTATTGGATATGTT+AGG | - | chr5_4:67742346-67742365 | Msa0866260:intron | 25.0% |
| ! | AAGTCCTTTGTAATCATATT+GGG | + | chr5_4:67742374-67742393 | None:intergenic | 25.0% |
| ! | CTAAAATTGCAATAAATGCA+AGG | + | chr5_4:67742399-67742418 | None:intergenic | 25.0% |
| !! | TATTAGTGGTTAATTTGTCG+GGG | + | chr5_4:67742091-67742110 | None:intergenic | 30.0% |
| TGTAAGAGGAAAATAGAGAA+AGG | - | chr5_4:67742126-67742145 | Msa0866260:CDS | 30.0% | |
| ATACAATCATCACCAAGTTA+TGG | + | chr5_4:67742336-67742355 | None:intergenic | 30.0% | |
| !! | TAACTTGGTGATGATTGTAT+TGG | - | chr5_4:67742336-67742355 | Msa0866260:intron | 30.0% |
| AGTCCTTTGTAATCATATTG+GGG | + | chr5_4:67742373-67742392 | None:intergenic | 30.0% | |
| GAAGTCCTTTGTAATCATAT+TGG | + | chr5_4:67742375-67742394 | None:intergenic | 30.0% | |
| !!! | TTTTTGGGTGAAGTTAACTA+TGG | - | chr5_4:67742523-67742542 | Msa0866260:intron | 30.0% |
| TTTGAAAGCTATTGCAATAG+AGG | - | chr5_4:67742641-67742660 | Msa0866260:intron | 30.0% | |
| !! | TATTAGTGGTTAATTTGTCG+GGG | + | chr5_4:67742091-67742110 | None:intergenic | 30.0% |
| TGTAAGAGGAAAATAGAGAA+AGG | - | chr5_4:67742126-67742145 | Msa0866260:CDS | 30.0% | |
| ATACAATCATCACCAAGTTA+TGG | + | chr5_4:67742336-67742355 | None:intergenic | 30.0% | |
| !! | TAACTTGGTGATGATTGTAT+TGG | - | chr5_4:67742336-67742355 | Msa0866260:intron | 30.0% |
| AGTCCTTTGTAATCATATTG+GGG | + | chr5_4:67742373-67742392 | None:intergenic | 30.0% | |
| GAAGTCCTTTGTAATCATAT+TGG | + | chr5_4:67742375-67742394 | None:intergenic | 30.0% | |
| !!! | TTTTTGGGTGAAGTTAACTA+TGG | - | chr5_4:67742523-67742542 | Msa0866260:intron | 30.0% |
| TTTGAAAGCTATTGCAATAG+AGG | - | chr5_4:67742641-67742660 | Msa0866260:intron | 30.0% | |
| TAGTAGAAGAGGTCGAATTT+CGG | + | chr5_4:67742055-67742074 | None:intergenic | 35.0% | |
| !! | ATTAGTGGTTAATTTGTCGG+GGG | + | chr5_4:67742090-67742109 | None:intergenic | 35.0% |
| ! | AAATGCTAGTCTCCATAACT+TGG | - | chr5_4:67742321-67742340 | Msa0866260:intron | 35.0% |
| ATGGTAATTCACATGCAAGA+TGG | - | chr5_4:67742600-67742619 | Msa0866260:intron | 35.0% | |
| TGGTAATTCACATGCAAGAT+GGG | - | chr5_4:67742601-67742620 | Msa0866260:intron | 35.0% | |
| GCCAATGAAAGAAGCAATAA+GGG | + | chr5_4:67742675-67742694 | None:intergenic | 35.0% | |
| AGCCAATGAAAGAAGCAATA+AGG | + | chr5_4:67742676-67742695 | None:intergenic | 35.0% | |
| TCACAGTGATAATCAAGAGA+AGG | + | chr5_4:67742703-67742722 | None:intergenic | 35.0% | |
| TAGTAGAAGAGGTCGAATTT+CGG | + | chr5_4:67742055-67742074 | None:intergenic | 35.0% | |
| !! | ATTAGTGGTTAATTTGTCGG+GGG | + | chr5_4:67742090-67742109 | None:intergenic | 35.0% |
| ! | AAATGCTAGTCTCCATAACT+TGG | - | chr5_4:67742321-67742340 | Msa0866260:intron | 35.0% |
| ATGGTAATTCACATGCAAGA+TGG | - | chr5_4:67742600-67742619 | Msa0866260:intron | 35.0% | |
| TGGTAATTCACATGCAAGAT+GGG | - | chr5_4:67742601-67742620 | Msa0866260:intron | 35.0% | |
| GCCAATGAAAGAAGCAATAA+GGG | + | chr5_4:67742675-67742694 | None:intergenic | 35.0% | |
| AGCCAATGAAAGAAGCAATA+AGG | + | chr5_4:67742676-67742695 | None:intergenic | 35.0% | |
| TCACAGTGATAATCAAGAGA+AGG | + | chr5_4:67742703-67742722 | None:intergenic | 35.0% | |
| AAGAAACATCTCCAGGGAAA+GGG | - | chr5_4:67741700-67741719 | Msa0866260:CDS | 40.0% | |
| GGATGAAAGAGATGAAGAAG+AGG | - | chr5_4:67741737-67741756 | Msa0866260:CDS | 40.0% | |
| ATACGATTGGACTACTCGTT+CGG | + | chr5_4:67741997-67742016 | None:intergenic | 40.0% | |
| TGTGTCTGAATCGATACGAT+TGG | + | chr5_4:67742010-67742029 | None:intergenic | 40.0% | |
| GAGAGAGTTGTTAGTAGAAG+AGG | + | chr5_4:67742066-67742085 | None:intergenic | 40.0% | |
| ACATCATTGTAGGGTGAAAC+AGG | - | chr5_4:67742278-67742297 | Msa0866260:intron | 40.0% | |
| AGGTTCTTTGTGATAGCCAA+TGG | - | chr5_4:67742298-67742317 | Msa0866260:intron | 40.0% | |
| ATGGAGACTAGCATTTCCAT+TGG | + | chr5_4:67742317-67742336 | None:intergenic | 40.0% | |
| GGACCCCAATATGATTACAA+AGG | - | chr5_4:67742367-67742386 | Msa0866260:intron | 40.0% | |
| AGCAACATTCATGTCAGCAT+TGG | - | chr5_4:67742571-67742590 | Msa0866260:intron | 40.0% | |
| GCAACATTCATGTCAGCATT+GGG | - | chr5_4:67742572-67742591 | Msa0866260:intron | 40.0% | |
| ! | ATGTCAGCATTGGGAAGAAA+TGG | - | chr5_4:67742581-67742600 | Msa0866260:intron | 40.0% |
| GAAAGCTATTGCAATAGAGG+TGG | - | chr5_4:67742644-67742663 | Msa0866260:intron | 40.0% | |
| GCCCTTATTGCTTCTTTCAT+TGG | - | chr5_4:67742671-67742690 | Msa0866260:intron | 40.0% | |
| AAGAAACATCTCCAGGGAAA+GGG | - | chr5_4:67741700-67741719 | Msa0866260:CDS | 40.0% | |
| GGATGAAAGAGATGAAGAAG+AGG | - | chr5_4:67741737-67741756 | Msa0866260:CDS | 40.0% | |
| ATACGATTGGACTACTCGTT+CGG | + | chr5_4:67741997-67742016 | None:intergenic | 40.0% | |
| TGTGTCTGAATCGATACGAT+TGG | + | chr5_4:67742010-67742029 | None:intergenic | 40.0% | |
| GAGAGAGTTGTTAGTAGAAG+AGG | + | chr5_4:67742066-67742085 | None:intergenic | 40.0% | |
| ACATCATTGTAGGGTGAAAC+AGG | - | chr5_4:67742278-67742297 | Msa0866260:intron | 40.0% | |
| AGGTTCTTTGTGATAGCCAA+TGG | - | chr5_4:67742298-67742317 | Msa0866260:intron | 40.0% | |
| ATGGAGACTAGCATTTCCAT+TGG | + | chr5_4:67742317-67742336 | None:intergenic | 40.0% | |
| GGACCCCAATATGATTACAA+AGG | - | chr5_4:67742367-67742386 | Msa0866260:intron | 40.0% | |
| AGCAACATTCATGTCAGCAT+TGG | - | chr5_4:67742571-67742590 | Msa0866260:intron | 40.0% | |
| GCAACATTCATGTCAGCATT+GGG | - | chr5_4:67742572-67742591 | Msa0866260:intron | 40.0% | |
| ! | ATGTCAGCATTGGGAAGAAA+TGG | - | chr5_4:67742581-67742600 | Msa0866260:intron | 40.0% |
| GAAAGCTATTGCAATAGAGG+TGG | - | chr5_4:67742644-67742663 | Msa0866260:intron | 40.0% | |
| GCCCTTATTGCTTCTTTCAT+TGG | - | chr5_4:67742671-67742690 | Msa0866260:intron | 40.0% | |
| TTCCTCCAAGAAACATCTCC+AGG | - | chr5_4:67741693-67741712 | Msa0866260:CDS | 45.0% | |
| TCCTCCAAGAAACATCTCCA+GGG | - | chr5_4:67741694-67741713 | Msa0866260:CDS | 45.0% | |
| CTTTCCCTGGAGATGTTTCT+TGG | + | chr5_4:67741701-67741720 | None:intergenic | 45.0% | |
| CAAGAAACATCTCCAGGGAA+AGG | - | chr5_4:67741699-67741718 | Msa0866260:CDS | 45.0% | |
| !! | TTGGTGATGAAGCAAGCTAG+AGG | - | chr5_4:67741771-67741790 | Msa0866260:CDS | 45.0% |
| ! | TGGTGATGAAGCAAGCTAGA+GGG | - | chr5_4:67741772-67741791 | Msa0866260:CDS | 45.0% |
| AGAAGACGGTGAACAGTAAC+TGG | - | chr5_4:67741795-67741814 | Msa0866260:CDS | 45.0% | |
| TACGATTGGACTACTCGTTC+GGG | + | chr5_4:67741996-67742015 | None:intergenic | 45.0% | |
| GGTGAAGTTAACTATGGCTC+TGG | - | chr5_4:67742529-67742548 | Msa0866260:intron | 45.0% | |
| AGCTATTGCAATAGAGGTGG+TGG | - | chr5_4:67742647-67742666 | Msa0866260:intron | 45.0% | |
| GGAGCATGGTTAATGCGATT+AGG | + | chr5_4:67742749-67742768 | None:intergenic | 45.0% | |
| TTCCTCCAAGAAACATCTCC+AGG | - | chr5_4:67741693-67741712 | Msa0866260:CDS | 45.0% | |
| TCCTCCAAGAAACATCTCCA+GGG | - | chr5_4:67741694-67741713 | Msa0866260:CDS | 45.0% | |
| CTTTCCCTGGAGATGTTTCT+TGG | + | chr5_4:67741701-67741720 | None:intergenic | 45.0% | |
| CAAGAAACATCTCCAGGGAA+AGG | - | chr5_4:67741699-67741718 | Msa0866260:CDS | 45.0% | |
| !! | TTGGTGATGAAGCAAGCTAG+AGG | - | chr5_4:67741771-67741790 | Msa0866260:CDS | 45.0% |
| ! | TGGTGATGAAGCAAGCTAGA+GGG | - | chr5_4:67741772-67741791 | Msa0866260:CDS | 45.0% |
| AGAAGACGGTGAACAGTAAC+TGG | - | chr5_4:67741795-67741814 | Msa0866260:CDS | 45.0% | |
| TACGATTGGACTACTCGTTC+GGG | + | chr5_4:67741996-67742015 | None:intergenic | 45.0% | |
| GGTGAAGTTAACTATGGCTC+TGG | - | chr5_4:67742529-67742548 | Msa0866260:intron | 45.0% | |
| AGCTATTGCAATAGAGGTGG+TGG | - | chr5_4:67742647-67742666 | Msa0866260:intron | 45.0% | |
| GGAGCATGGTTAATGCGATT+AGG | + | chr5_4:67742749-67742768 | None:intergenic | 45.0% | |
| !!! | TTTGATAAATAATATTTTTT+TGG | - | chr5_4:67742507-67742526 | Msa0866260:intron | 5.0% |
| !!! | TTGATAAATAATATTTTTTT+GGG | - | chr5_4:67742508-67742527 | Msa0866260:intron | 5.0% |
| !!! | TTTGATAAATAATATTTTTT+TGG | - | chr5_4:67742507-67742526 | Msa0866260:intron | 5.0% |
| !!! | TTGATAAATAATATTTTTTT+GGG | - | chr5_4:67742508-67742527 | Msa0866260:intron | 5.0% |
| TCCCTGGAGATGTTTCTTGG+AGG | + | chr5_4:67741698-67741717 | None:intergenic | 50.0% | |
| AGCAAGCTAGAGGGAGAAGA+CGG | - | chr5_4:67741781-67741800 | Msa0866260:CDS | 50.0% | |
| ACGATTGGACTACTCGTTCG+GGG | + | chr5_4:67741995-67742014 | None:intergenic | 50.0% | |
| AGGCTTGAGAAGCTTGGCAA+TGG | + | chr5_4:67742729-67742748 | None:intergenic | 50.0% | |
| GCGATTAGGCTTGAGAAGCT+TGG | + | chr5_4:67742735-67742754 | None:intergenic | 50.0% | |
| TCCCTGGAGATGTTTCTTGG+AGG | + | chr5_4:67741698-67741717 | None:intergenic | 50.0% | |
| AGCAAGCTAGAGGGAGAAGA+CGG | - | chr5_4:67741781-67741800 | Msa0866260:CDS | 50.0% | |
| ACGATTGGACTACTCGTTCG+GGG | + | chr5_4:67741995-67742014 | None:intergenic | 50.0% | |
| AGGCTTGAGAAGCTTGGCAA+TGG | + | chr5_4:67742729-67742748 | None:intergenic | 50.0% | |
| GCGATTAGGCTTGAGAAGCT+TGG | + | chr5_4:67742735-67742754 | None:intergenic | 50.0% | |
| TCTCCAGGGAAAGGGATCCA+TGG | - | chr5_4:67741708-67741727 | Msa0866260:CDS | 55.0% | |
| CTCCAGGGAAAGGGATCCAT+GGG | - | chr5_4:67741709-67741728 | Msa0866260:CDS | 55.0% | |
| TCCAGGGAAAGGGATCCATG+GGG | - | chr5_4:67741710-67741729 | Msa0866260:CDS | 55.0% | |
| GGAAAGGGATCCATGGGGAT+CGG | - | chr5_4:67741715-67741734 | Msa0866260:CDS | 55.0% | |
| GAAAGGGATCCATGGGGATC+GGG | - | chr5_4:67741716-67741735 | Msa0866260:CDS | 55.0% | |
| CTCTTTCATCCCGATCCCCA+TGG | + | chr5_4:67741728-67741747 | None:intergenic | 55.0% | |
| CGATTGGACTACTCGTTCGG+GGG | + | chr5_4:67741994-67742013 | None:intergenic | 55.0% | |
| !! | ACTATGGCTCTGGCATCAGC+TGG | - | chr5_4:67742539-67742558 | Msa0866260:intron | 55.0% |
| TCTCCAGGGAAAGGGATCCA+TGG | - | chr5_4:67741708-67741727 | Msa0866260:CDS | 55.0% | |
| CTCCAGGGAAAGGGATCCAT+GGG | - | chr5_4:67741709-67741728 | Msa0866260:CDS | 55.0% | |
| TCCAGGGAAAGGGATCCATG+GGG | - | chr5_4:67741710-67741729 | Msa0866260:CDS | 55.0% | |
| GGAAAGGGATCCATGGGGAT+CGG | - | chr5_4:67741715-67741734 | Msa0866260:CDS | 55.0% | |
| GAAAGGGATCCATGGGGATC+GGG | - | chr5_4:67741716-67741735 | Msa0866260:CDS | 55.0% | |
| CTCTTTCATCCCGATCCCCA+TGG | + | chr5_4:67741728-67741747 | None:intergenic | 55.0% | |
| CGATTGGACTACTCGTTCGG+GGG | + | chr5_4:67741994-67742013 | None:intergenic | 55.0% | |
| !! | ACTATGGCTCTGGCATCAGC+TGG | - | chr5_4:67742539-67742558 | Msa0866260:intron | 55.0% |
| TCCCCATGGATCCCTTTCCC+TGG | + | chr5_4:67741714-67741733 | None:intergenic | 60.0% | |
| GCTCTGGCATCAGCTGGAGA+TGG | - | chr5_4:67742545-67742564 | Msa0866260:intron | 60.0% | |
| TCCCCATGGATCCCTTTCCC+TGG | + | chr5_4:67741714-67741733 | None:intergenic | 60.0% | |
| GCTCTGGCATCAGCTGGAGA+TGG | - | chr5_4:67742545-67742564 | Msa0866260:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 67741688 | 67742778 | 67741688 | ID=Msa0866260;Name=Msa0866260 |
| chr5_4 | mRNA | 67741688 | 67742778 | 67741688 | ID=Msa0866260-mRNA-1;Parent=Msa0866260;Name=Msa0866260-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|0.66|1|1|3|0|145 |
| chr5_4 | exon | 67742708 | 67742778 | 67742708 | ID=Msa0866260-mRNA-1:exon:21415;Parent=Msa0866260-mRNA-1 |
| chr5_4 | exon | 67742043 | 67742166 | 67742043 | ID=Msa0866260-mRNA-1:exon:21414;Parent=Msa0866260-mRNA-1 |
| chr5_4 | exon | 67741688 | 67741930 | 67741688 | ID=Msa0866260-mRNA-1:exon:21413;Parent=Msa0866260-mRNA-1 |
| chr5_4 | CDS | 67742708 | 67742778 | 67742708 | ID=Msa0866260-mRNA-1:cds;Parent=Msa0866260-mRNA-1 |
| chr5_4 | CDS | 67742043 | 67742166 | 67742043 | ID=Msa0866260-mRNA-1:cds;Parent=Msa0866260-mRNA-1 |
| chr5_4 | CDS | 67741688 | 67741930 | 67741688 | ID=Msa0866260-mRNA-1:cds;Parent=Msa0866260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
