Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425810 | MCH84034.1 | 96.694 | 121 | 4 | 0 | 25 | 145 | 81 | 201 | 8.89e-80 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425810 | sp|C6TG62|CSPL9_SOYBN | 75.652 | 115 | 28 | 0 | 25 | 139 | 80 | 194 | 9.87e-61 | 188 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425810 | A0A392MCN9 | 96.694 | 121 | 4 | 0 | 25 | 145 | 81 | 201 | 4.25e-80 | 244 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0060410 | Msa1425810 | 0.803955 | 2.723046e-49 | -8.615850e-47 |
| Msa1362590 | Msa1425810 | 0.817575 | 3.071158e-52 | -8.615850e-47 |
| Msa1384130 | Msa1425810 | 0.844393 | 7.771746e-59 | -8.615850e-47 |
| Msa1387100 | Msa1425810 | -0.802901 | 4.502551e-49 | -8.615850e-47 |
| Msa1395080 | Msa1425810 | 0.812530 | 4.048133e-51 | -8.615850e-47 |
| Msa1422820 | Msa1425810 | -0.803998 | 2.667511e-49 | -8.615850e-47 |
| Msa0658150 | Msa1425810 | 0.809260 | 2.065705e-50 | -8.615850e-47 |
| Msa0685390 | Msa1425810 | -0.813394 | 2.617845e-51 | -8.615850e-47 |
| Msa0703000 | Msa1425810 | 0.812141 | 4.922864e-51 | -8.615850e-47 |
| Msa0708020 | Msa1425810 | 0.805351 | 1.391860e-49 | -8.615850e-47 |
| Msa0807270 | Msa1425810 | 0.970050 | 4.952974e-131 | -8.615850e-47 |
| Msa0130360 | Msa1425810 | 0.822574 | 2.202925e-53 | -8.615850e-47 |
| Msa0132080 | Msa1425810 | -0.804880 | 1.746897e-49 | -8.615850e-47 |
| Msa0188560 | Msa1425810 | 0.818130 | 2.301373e-52 | -8.615850e-47 |
| Msa0189990 | Msa1425810 | 0.812105 | 5.011191e-51 | -8.615850e-47 |
| Msa0221180 | Msa1425810 | 0.806202 | 9.225042e-50 | -8.615850e-47 |
| Msa0230920 | Msa1425810 | 0.829000 | 6.573714e-55 | -8.615850e-47 |
| Msa1231440 | Msa1425810 | 0.808286 | 3.336292e-50 | -8.615850e-47 |
| Msa1273320 | Msa1425810 | 0.807591 | 4.690399e-50 | -8.615850e-47 |
| Msa1278000 | Msa1425810 | 0.803073 | 4.149202e-49 | -8.615850e-47 |
| Msa1288970 | Msa1425810 | -0.801229 | 9.936602e-49 | -8.615850e-47 |
| Msa1290090 | Msa1425810 | -0.804622 | 1.977070e-49 | -8.615850e-47 |
| Msa1339530 | Msa1425810 | 0.810175 | 1.313612e-50 | -8.615850e-47 |
| Msa0463820 | Msa1425810 | -0.822548 | 2.233206e-53 | -8.615850e-47 |
| Msa0247780 | Msa1425810 | 0.859015 | 5.538646e-63 | -8.615850e-47 |
| Msa0300470 | Msa1425810 | 0.806475 | 8.080912e-50 | -8.615850e-47 |
| Msa0325260 | Msa1425810 | 0.854464 | 1.210022e-61 | -8.615850e-47 |
| Msa0336430 | Msa1425810 | 0.808508 | 2.991969e-50 | -8.615850e-47 |
| Msa0336460 | Msa1425810 | 0.804889 | 1.739269e-49 | -8.615850e-47 |
| Msa0336520 | Msa1425810 | 0.800028 | 1.746799e-48 | -8.615850e-47 |
| Msa1111910 | Msa1425810 | 0.815860 | 7.444140e-52 | -8.615850e-47 |
| Msa0567570 | Msa1425810 | 0.801046 | 1.082977e-48 | -8.615850e-47 |
| Msa0568920 | Msa1425810 | 0.808265 | 3.371246e-50 | -8.615850e-47 |
| Msa0847140 | Msa1425810 | 0.807853 | 4.125708e-50 | -8.615850e-47 |
| Msa0866260 | Msa1425810 | 0.969246 | 7.674262e-130 | -8.615850e-47 |
| Msa0866280 | Msa1425810 | 0.958573 | 1.685915e-116 | -8.615850e-47 |
| Msa0941150 | Msa1425810 | -0.802214 | 6.237841e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425810 | MtrunA17_Chr2g0303151 | 96.694 | 121 | 4 | 0 | 25 | 145 | 81 | 201 | 1.28e-83 | 244 |
| Msa1425810 | MtrunA17_Chr8g0381001 | 74.561 | 114 | 29 | 0 | 25 | 138 | 80 | 193 | 4.72e-51 | 161 |
| Msa1425810 | MtrunA17_Chr4g0021111 | 31.858 | 113 | 70 | 1 | 24 | 136 | 52 | 157 | 8.21e-14 | 64.7 |
| Msa1425810 | MtrunA17_Chr7g0268681 | 33.028 | 109 | 72 | 1 | 25 | 133 | 78 | 185 | 1.13e-13 | 65.1 |
| Msa1425810 | MtrunA17_Chr4g0066721 | 36.559 | 93 | 54 | 2 | 25 | 115 | 88 | 177 | 1.31e-13 | 65.1 |
| Msa1425810 | MtrunA17_Chr7g0217691 | 31.250 | 112 | 74 | 1 | 24 | 132 | 74 | 185 | 6.70e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425810 | AT5G44550.1 | 55.263 | 114 | 51 | 0 | 25 | 138 | 72 | 185 | 2.16e-38 | 129 |
| Msa1425810 | AT4G20390.1 | 54.545 | 110 | 50 | 0 | 25 | 134 | 72 | 181 | 5.66e-28 | 102 |
| Msa1425810 | AT1G14160.1 | 35.185 | 108 | 64 | 3 | 25 | 129 | 98 | 202 | 4.37e-13 | 63.9 |
| Msa1425810 | AT1G03700.1 | 27.434 | 113 | 75 | 2 | 24 | 136 | 53 | 158 | 9.90e-13 | 62.4 |
| Msa1425810 | AT4G03540.1 | 30.526 | 95 | 59 | 2 | 24 | 118 | 53 | 140 | 4.44e-11 | 57.8 |
Find 46 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCCCTGGAGATGTTTCT+TGG | 0.181666 | tig0025899:-28855 | None:intergenic |
| GCCCTTATTGCTTCTTTCAT+TGG | 0.228754 | tig0025899:+29829 | Msa1425810:CDS |
| AAGTCCTTTGTAATCATATT+GGG | 0.274380 | tig0025899:-29529 | None:intergenic |
| GAAGTCCTTTGTAATCATAT+TGG | 0.328703 | tig0025899:-29530 | None:intergenic |
| AGCCAATGAAAGAAGCAATA+AGG | 0.340360 | tig0025899:-29831 | None:intergenic |
| TTTGAAAGCTATTGCAATAG+AGG | 0.418883 | tig0025899:+29799 | Msa1425810:CDS |
| ATGTCAGCATTGGGAAGAAA+TGG | 0.423404 | tig0025899:+29739 | Msa1425810:CDS |
| GAAAGGGATCCATGGGGATC+GGG | 0.424491 | tig0025899:+28873 | Msa1425810:CDS |
| GCCAATGAAAGAAGCAATAA+GGG | 0.431019 | tig0025899:-29830 | None:intergenic |
| TAACTTGGTGATGATTGTAT+TGG | 0.435126 | tig0025899:+29494 | Msa1425810:CDS |
| TTCCTCCAAGAAACATCTCC+AGG | 0.461856 | tig0025899:+28850 | Msa1425810:CDS |
| ATGATTGTATTGGATATGTT+AGG | 0.463140 | tig0025899:+29504 | Msa1425810:CDS |
| ATACAATCATCACCAAGTTA+TGG | 0.469497 | tig0025899:-29491 | None:intergenic |
| GGAGCATGGTTAATGCGATT+AGG | 0.484616 | tig0025899:-29904 | None:intergenic |
| AGCAACATTCATGTCAGCAT+TGG | 0.488005 | tig0025899:+29729 | Msa1425810:CDS |
| ACTATGGCTCTGGCATCAGC+TGG | 0.494373 | tig0025899:+29697 | Msa1425810:CDS |
| GGAAAGGGATCCATGGGGAT+CGG | 0.494403 | tig0025899:+28872 | Msa1425810:CDS |
| GCGATTAGGCTTGAGAAGCT+TGG | 0.494528 | tig0025899:-29890 | None:intergenic |
| GCAACATTCATGTCAGCATT+GGG | 0.495269 | tig0025899:+29730 | Msa1425810:CDS |
| AAATGCTAGTCTCCATAACT+TGG | 0.496794 | tig0025899:+29479 | Msa1425810:CDS |
| CTCCAGGGAAAGGGATCCAT+GGG | 0.497012 | tig0025899:+28866 | Msa1425810:CDS |
| GGTGAAGTTAACTATGGCTC+TGG | 0.500555 | tig0025899:+29687 | Msa1425810:intron |
| TCCCTGGAGATGTTTCTTGG+AGG | 0.509139 | tig0025899:-28852 | None:intergenic |
| ATGTTAATCATATCAAGGAC+TGG | 0.510976 | tig0025899:-29926 | None:intergenic |
| AAGAAACATCTCCAGGGAAA+GGG | 0.511891 | tig0025899:+28857 | Msa1425810:CDS |
| TGGTAATTCACATGCAAGAT+GGG | 0.512674 | tig0025899:+29759 | Msa1425810:CDS |
| TCTCCAGGGAAAGGGATCCA+TGG | 0.517604 | tig0025899:+28865 | Msa1425810:CDS |
| TCCCCATGGATCCCTTTCCC+TGG | 0.521726 | tig0025899:-28868 | None:intergenic |
| ATGGTAATTCACATGCAAGA+TGG | 0.522902 | tig0025899:+29758 | Msa1425810:CDS |
| ATGGAGACTAGCATTTCCAT+TGG | 0.523367 | tig0025899:-29472 | None:intergenic |
| AGGTTCTTTGTGATAGCCAA+TGG | 0.529472 | tig0025899:+29456 | Msa1425810:intron |
| CAAGAAACATCTCCAGGGAA+AGG | 0.531923 | tig0025899:+28856 | Msa1425810:CDS |
| GCTCTGGCATCAGCTGGAGA+TGG | 0.540036 | tig0025899:+29703 | Msa1425810:CDS |
| CTCTTTCATCCCGATCCCCA+TGG | 0.551810 | tig0025899:-28882 | None:intergenic |
| CATATCAAGGACTGGGAGCA+TGG | 0.559515 | tig0025899:-29918 | None:intergenic |
| TGTTAATCATATCAAGGACT+GGG | 0.560345 | tig0025899:-29925 | None:intergenic |
| AGGCTTGAGAAGCTTGGCAA+TGG | 0.561801 | tig0025899:-29884 | None:intergenic |
| GGATGAAAGAGATGAAGAAG+AGG | 0.577440 | tig0025899:+28894 | Msa1425810:CDS |
| CTAAAATTGCAATAAATGCA+AGG | 0.578209 | tig0025899:-29554 | None:intergenic |
| AGCTATTGCAATAGAGGTGG+TGG | 0.598102 | tig0025899:+29805 | Msa1425810:CDS |
| GAAAGCTATTGCAATAGAGG+TGG | 0.619990 | tig0025899:+29802 | Msa1425810:CDS |
| TCACAGTGATAATCAAGAGA+AGG | 0.626568 | tig0025899:-29858 | None:intergenic |
| AGTCCTTTGTAATCATATTG+GGG | 0.628572 | tig0025899:-29528 | None:intergenic |
| TCCTCCAAGAAACATCTCCA+GGG | 0.649476 | tig0025899:+28851 | Msa1425810:CDS |
| GGACCCCAATATGATTACAA+AGG | 0.686673 | tig0025899:+29525 | Msa1425810:CDS |
| TCCAGGGAAAGGGATCCATG+GGG | 0.763415 | tig0025899:+28867 | Msa1425810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTTAATTTTTTTCTT+AGG | + | tig0025899:29618-29637 | Msa1425810:intron | 10.0% |
| !!! | AGTTTTTTAATTTTTTTCTT+AGG | + | tig0025899:29618-29637 | Msa1425810:intron | 10.0% |
| !!! | TTTTTATAGGTAAATATTAG+TGG | - | tig0025899:29263-29282 | None:intergenic | 15.0% |
| !!! | TTTTTATAGGTAAATATTAG+TGG | - | tig0025899:29263-29282 | None:intergenic | 15.0% |
| !!! | TTGATTGACATTTTTTTTCT+GGG | - | tig0025899:29010-29029 | None:intergenic | 20.0% |
| !!! | TTTGATTGACATTTTTTTTC+TGG | - | tig0025899:29011-29030 | None:intergenic | 20.0% |
| !!! | ACACAAAAAAAGTTTTATGT+AGG | + | tig0025899:29183-29202 | Msa1425810:intron | 20.0% |
| !!! | AATATTAGTGGTTAATTTGT+CGG | - | tig0025899:29251-29270 | None:intergenic | 20.0% |
| !! | TTACCTATAAAAAATGTAAG+AGG | + | tig0025899:29270-29289 | Msa1425810:intron | 20.0% |
| !!! | TTTCCTCTTACATTTTTTAT+AGG | - | tig0025899:29276-29295 | None:intergenic | 20.0% |
| !!! | ATTTATTGCAATTTTAGACA+TGG | + | tig0025899:29560-29579 | Msa1425810:CDS | 20.0% |
| !!! | TTGATTGACATTTTTTTTCT+GGG | - | tig0025899:29010-29029 | None:intergenic | 20.0% |
| !!! | TTTGATTGACATTTTTTTTC+TGG | - | tig0025899:29011-29030 | None:intergenic | 20.0% |
| !!! | ACACAAAAAAAGTTTTATGT+AGG | + | tig0025899:29183-29202 | Msa1425810:intron | 20.0% |
| !!! | AATATTAGTGGTTAATTTGT+CGG | - | tig0025899:29251-29270 | None:intergenic | 20.0% |
| !! | TTACCTATAAAAAATGTAAG+AGG | + | tig0025899:29270-29289 | Msa1425810:intron | 20.0% |
| !!! | TTTCCTCTTACATTTTTTAT+AGG | - | tig0025899:29276-29295 | None:intergenic | 20.0% |
| !!! | ATTTATTGCAATTTTAGACA+TGG | + | tig0025899:29560-29579 | Msa1425810:CDS | 20.0% |
| !!! | AGAAGAGGTTAAAAAGTATT+TGG | + | tig0025899:28909-28928 | Msa1425810:intron | 25.0% |
| ! | TAAGTAAAAATGAAAGTCTC+TGG | - | tig0025899:28984-29003 | None:intergenic | 25.0% |
| !!! | TGATTGACATTTTTTTTCTG+GGG | - | tig0025899:29009-29028 | None:intergenic | 25.0% |
| ! | AACGAACATAAATAGAAAAG+AGG | - | tig0025899:29095-29114 | None:intergenic | 25.0% |
| !!! | CAAAAAAAGTTTTATGTAGG+AGG | + | tig0025899:29186-29205 | Msa1425810:intron | 25.0% |
| !!! | ATATTAGTGGTTAATTTGTC+GGG | - | tig0025899:29250-29269 | None:intergenic | 25.0% |
| ! | AATTTCATCGCTTAATTCAA+AGG | + | tig0025899:29328-29347 | Msa1425810:intron | 25.0% |
| ! | TTACATTAACACATCATTGT+AGG | + | tig0025899:29426-29445 | Msa1425810:intron | 25.0% |
| ! | TACATTAACACATCATTGTA+GGG | + | tig0025899:29427-29446 | Msa1425810:intron | 25.0% |
| ! | ATGATTGTATTGGATATGTT+AGG | + | tig0025899:29504-29523 | Msa1425810:CDS | 25.0% |
| ! | AAGTCCTTTGTAATCATATT+GGG | - | tig0025899:29532-29551 | None:intergenic | 25.0% |
| ! | CTAAAATTGCAATAAATGCA+AGG | - | tig0025899:29557-29576 | None:intergenic | 25.0% |
| !!! | AGAAGAGGTTAAAAAGTATT+TGG | + | tig0025899:28909-28928 | Msa1425810:intron | 25.0% |
| ! | TAAGTAAAAATGAAAGTCTC+TGG | - | tig0025899:28984-29003 | None:intergenic | 25.0% |
| !!! | TGATTGACATTTTTTTTCTG+GGG | - | tig0025899:29009-29028 | None:intergenic | 25.0% |
| ! | AACGAACATAAATAGAAAAG+AGG | - | tig0025899:29095-29114 | None:intergenic | 25.0% |
| !!! | CAAAAAAAGTTTTATGTAGG+AGG | + | tig0025899:29186-29205 | Msa1425810:intron | 25.0% |
| !!! | ATATTAGTGGTTAATTTGTC+GGG | - | tig0025899:29250-29269 | None:intergenic | 25.0% |
| ! | AATTTCATCGCTTAATTCAA+AGG | + | tig0025899:29328-29347 | Msa1425810:intron | 25.0% |
| ! | TTACATTAACACATCATTGT+AGG | + | tig0025899:29426-29445 | Msa1425810:intron | 25.0% |
| ! | TACATTAACACATCATTGTA+GGG | + | tig0025899:29427-29446 | Msa1425810:intron | 25.0% |
| ! | ATGATTGTATTGGATATGTT+AGG | + | tig0025899:29504-29523 | Msa1425810:CDS | 25.0% |
| ! | AAGTCCTTTGTAATCATATT+GGG | - | tig0025899:29532-29551 | None:intergenic | 25.0% |
| ! | CTAAAATTGCAATAAATGCA+AGG | - | tig0025899:29557-29576 | None:intergenic | 25.0% |
| !! | TATTAGTGGTTAATTTGTCG+GGG | - | tig0025899:29249-29268 | None:intergenic | 30.0% |
| TGTAAGAGGAAAATAGAGAA+AGG | + | tig0025899:29284-29303 | Msa1425810:intron | 30.0% | |
| ATACAATCATCACCAAGTTA+TGG | - | tig0025899:29494-29513 | None:intergenic | 30.0% | |
| !! | TAACTTGGTGATGATTGTAT+TGG | + | tig0025899:29494-29513 | Msa1425810:CDS | 30.0% |
| AGTCCTTTGTAATCATATTG+GGG | - | tig0025899:29531-29550 | None:intergenic | 30.0% | |
| GAAGTCCTTTGTAATCATAT+TGG | - | tig0025899:29533-29552 | None:intergenic | 30.0% | |
| !!! | TTTTTGGGTGAAGTTAACTA+TGG | + | tig0025899:29681-29700 | Msa1425810:intron | 30.0% |
| TTTGAAAGCTATTGCAATAG+AGG | + | tig0025899:29799-29818 | Msa1425810:CDS | 30.0% | |
| !! | TATTAGTGGTTAATTTGTCG+GGG | - | tig0025899:29249-29268 | None:intergenic | 30.0% |
| TGTAAGAGGAAAATAGAGAA+AGG | + | tig0025899:29284-29303 | Msa1425810:intron | 30.0% | |
| ATACAATCATCACCAAGTTA+TGG | - | tig0025899:29494-29513 | None:intergenic | 30.0% | |
| !! | TAACTTGGTGATGATTGTAT+TGG | + | tig0025899:29494-29513 | Msa1425810:CDS | 30.0% |
| AGTCCTTTGTAATCATATTG+GGG | - | tig0025899:29531-29550 | None:intergenic | 30.0% | |
| GAAGTCCTTTGTAATCATAT+TGG | - | tig0025899:29533-29552 | None:intergenic | 30.0% | |
| !!! | TTTTTGGGTGAAGTTAACTA+TGG | + | tig0025899:29681-29700 | Msa1425810:intron | 30.0% |
| TTTGAAAGCTATTGCAATAG+AGG | + | tig0025899:29799-29818 | Msa1425810:CDS | 30.0% | |
| TAGTAGAAGAGGTCGAATTT+CGG | - | tig0025899:29213-29232 | None:intergenic | 35.0% | |
| !! | ATTAGTGGTTAATTTGTCGG+GGG | - | tig0025899:29248-29267 | None:intergenic | 35.0% |
| ! | AAATGCTAGTCTCCATAACT+TGG | + | tig0025899:29479-29498 | Msa1425810:CDS | 35.0% |
| ATGGTAATTCACATGCAAGA+TGG | + | tig0025899:29758-29777 | Msa1425810:CDS | 35.0% | |
| TGGTAATTCACATGCAAGAT+GGG | + | tig0025899:29759-29778 | Msa1425810:CDS | 35.0% | |
| GCCAATGAAAGAAGCAATAA+GGG | - | tig0025899:29833-29852 | None:intergenic | 35.0% | |
| AGCCAATGAAAGAAGCAATA+AGG | - | tig0025899:29834-29853 | None:intergenic | 35.0% | |
| TCACAGTGATAATCAAGAGA+AGG | - | tig0025899:29861-29880 | None:intergenic | 35.0% | |
| TAGTAGAAGAGGTCGAATTT+CGG | - | tig0025899:29213-29232 | None:intergenic | 35.0% | |
| !! | ATTAGTGGTTAATTTGTCGG+GGG | - | tig0025899:29248-29267 | None:intergenic | 35.0% |
| ! | AAATGCTAGTCTCCATAACT+TGG | + | tig0025899:29479-29498 | Msa1425810:CDS | 35.0% |
| ATGGTAATTCACATGCAAGA+TGG | + | tig0025899:29758-29777 | Msa1425810:CDS | 35.0% | |
| TGGTAATTCACATGCAAGAT+GGG | + | tig0025899:29759-29778 | Msa1425810:CDS | 35.0% | |
| GCCAATGAAAGAAGCAATAA+GGG | - | tig0025899:29833-29852 | None:intergenic | 35.0% | |
| AGCCAATGAAAGAAGCAATA+AGG | - | tig0025899:29834-29853 | None:intergenic | 35.0% | |
| TCACAGTGATAATCAAGAGA+AGG | - | tig0025899:29861-29880 | None:intergenic | 35.0% | |
| AAGAAACATCTCCAGGGAAA+GGG | + | tig0025899:28857-28876 | Msa1425810:CDS | 40.0% | |
| GGATGAAAGAGATGAAGAAG+AGG | + | tig0025899:28894-28913 | Msa1425810:CDS | 40.0% | |
| ATACGATTGGACTACTCGTT+CGG | - | tig0025899:29155-29174 | None:intergenic | 40.0% | |
| TGTGTCTGAATCGATACGAT+TGG | - | tig0025899:29168-29187 | None:intergenic | 40.0% | |
| GAGAGAGTTGTTAGTAGAAG+AGG | - | tig0025899:29224-29243 | None:intergenic | 40.0% | |
| ACATCATTGTAGGGTGAAAC+AGG | + | tig0025899:29436-29455 | Msa1425810:intron | 40.0% | |
| AGGTTCTTTGTGATAGCCAA+TGG | + | tig0025899:29456-29475 | Msa1425810:intron | 40.0% | |
| ATGGAGACTAGCATTTCCAT+TGG | - | tig0025899:29475-29494 | None:intergenic | 40.0% | |
| GGACCCCAATATGATTACAA+AGG | + | tig0025899:29525-29544 | Msa1425810:CDS | 40.0% | |
| AGCAACATTCATGTCAGCAT+TGG | + | tig0025899:29729-29748 | Msa1425810:CDS | 40.0% | |
| GCAACATTCATGTCAGCATT+GGG | + | tig0025899:29730-29749 | Msa1425810:CDS | 40.0% | |
| ! | ATGTCAGCATTGGGAAGAAA+TGG | + | tig0025899:29739-29758 | Msa1425810:CDS | 40.0% |
| GAAAGCTATTGCAATAGAGG+TGG | + | tig0025899:29802-29821 | Msa1425810:CDS | 40.0% | |
| GCCCTTATTGCTTCTTTCAT+TGG | + | tig0025899:29829-29848 | Msa1425810:CDS | 40.0% | |
| AAGAAACATCTCCAGGGAAA+GGG | + | tig0025899:28857-28876 | Msa1425810:CDS | 40.0% | |
| GGATGAAAGAGATGAAGAAG+AGG | + | tig0025899:28894-28913 | Msa1425810:CDS | 40.0% | |
| ATACGATTGGACTACTCGTT+CGG | - | tig0025899:29155-29174 | None:intergenic | 40.0% | |
| TGTGTCTGAATCGATACGAT+TGG | - | tig0025899:29168-29187 | None:intergenic | 40.0% | |
| GAGAGAGTTGTTAGTAGAAG+AGG | - | tig0025899:29224-29243 | None:intergenic | 40.0% | |
| ACATCATTGTAGGGTGAAAC+AGG | + | tig0025899:29436-29455 | Msa1425810:intron | 40.0% | |
| AGGTTCTTTGTGATAGCCAA+TGG | + | tig0025899:29456-29475 | Msa1425810:intron | 40.0% | |
| ATGGAGACTAGCATTTCCAT+TGG | - | tig0025899:29475-29494 | None:intergenic | 40.0% | |
| GGACCCCAATATGATTACAA+AGG | + | tig0025899:29525-29544 | Msa1425810:CDS | 40.0% | |
| AGCAACATTCATGTCAGCAT+TGG | + | tig0025899:29729-29748 | Msa1425810:CDS | 40.0% | |
| GCAACATTCATGTCAGCATT+GGG | + | tig0025899:29730-29749 | Msa1425810:CDS | 40.0% | |
| ! | ATGTCAGCATTGGGAAGAAA+TGG | + | tig0025899:29739-29758 | Msa1425810:CDS | 40.0% |
| GAAAGCTATTGCAATAGAGG+TGG | + | tig0025899:29802-29821 | Msa1425810:CDS | 40.0% | |
| GCCCTTATTGCTTCTTTCAT+TGG | + | tig0025899:29829-29848 | Msa1425810:CDS | 40.0% | |
| TTCCTCCAAGAAACATCTCC+AGG | + | tig0025899:28850-28869 | Msa1425810:CDS | 45.0% | |
| TCCTCCAAGAAACATCTCCA+GGG | + | tig0025899:28851-28870 | Msa1425810:CDS | 45.0% | |
| CTTTCCCTGGAGATGTTTCT+TGG | - | tig0025899:28858-28877 | None:intergenic | 45.0% | |
| CAAGAAACATCTCCAGGGAA+AGG | + | tig0025899:28856-28875 | Msa1425810:CDS | 45.0% | |
| !! | TTGGTGATGAAGCAAGCTAG+AGG | + | tig0025899:28928-28947 | Msa1425810:intron | 45.0% |
| ! | TGGTGATGAAGCAAGCTAGA+GGG | + | tig0025899:28929-28948 | Msa1425810:intron | 45.0% |
| AGAAGACGGTGAACAGTAAC+TGG | + | tig0025899:28952-28971 | Msa1425810:intron | 45.0% | |
| TACGATTGGACTACTCGTTC+GGG | - | tig0025899:29154-29173 | None:intergenic | 45.0% | |
| GGTGAAGTTAACTATGGCTC+TGG | + | tig0025899:29687-29706 | Msa1425810:intron | 45.0% | |
| AGCTATTGCAATAGAGGTGG+TGG | + | tig0025899:29805-29824 | Msa1425810:CDS | 45.0% | |
| GGAGCATGGTTAATGCGATT+AGG | - | tig0025899:29907-29926 | None:intergenic | 45.0% | |
| TTCCTCCAAGAAACATCTCC+AGG | + | tig0025899:28850-28869 | Msa1425810:CDS | 45.0% | |
| TCCTCCAAGAAACATCTCCA+GGG | + | tig0025899:28851-28870 | Msa1425810:CDS | 45.0% | |
| CTTTCCCTGGAGATGTTTCT+TGG | - | tig0025899:28858-28877 | None:intergenic | 45.0% | |
| CAAGAAACATCTCCAGGGAA+AGG | + | tig0025899:28856-28875 | Msa1425810:CDS | 45.0% | |
| !! | TTGGTGATGAAGCAAGCTAG+AGG | + | tig0025899:28928-28947 | Msa1425810:intron | 45.0% |
| ! | TGGTGATGAAGCAAGCTAGA+GGG | + | tig0025899:28929-28948 | Msa1425810:intron | 45.0% |
| AGAAGACGGTGAACAGTAAC+TGG | + | tig0025899:28952-28971 | Msa1425810:intron | 45.0% | |
| TACGATTGGACTACTCGTTC+GGG | - | tig0025899:29154-29173 | None:intergenic | 45.0% | |
| GGTGAAGTTAACTATGGCTC+TGG | + | tig0025899:29687-29706 | Msa1425810:intron | 45.0% | |
| AGCTATTGCAATAGAGGTGG+TGG | + | tig0025899:29805-29824 | Msa1425810:CDS | 45.0% | |
| GGAGCATGGTTAATGCGATT+AGG | - | tig0025899:29907-29926 | None:intergenic | 45.0% | |
| !!! | TTTGATAAATAATATTTTTT+TGG | + | tig0025899:29665-29684 | Msa1425810:intron | 5.0% |
| !!! | TTGATAAATAATATTTTTTT+GGG | + | tig0025899:29666-29685 | Msa1425810:intron | 5.0% |
| !!! | TTTGATAAATAATATTTTTT+TGG | + | tig0025899:29665-29684 | Msa1425810:intron | 5.0% |
| !!! | TTGATAAATAATATTTTTTT+GGG | + | tig0025899:29666-29685 | Msa1425810:intron | 5.0% |
| TCCCTGGAGATGTTTCTTGG+AGG | - | tig0025899:28855-28874 | None:intergenic | 50.0% | |
| AGCAAGCTAGAGGGAGAAGA+CGG | + | tig0025899:28938-28957 | Msa1425810:intron | 50.0% | |
| ACGATTGGACTACTCGTTCG+GGG | - | tig0025899:29153-29172 | None:intergenic | 50.0% | |
| AGGCTTGAGAAGCTTGGCAA+TGG | - | tig0025899:29887-29906 | None:intergenic | 50.0% | |
| GCGATTAGGCTTGAGAAGCT+TGG | - | tig0025899:29893-29912 | None:intergenic | 50.0% | |
| TCCCTGGAGATGTTTCTTGG+AGG | - | tig0025899:28855-28874 | None:intergenic | 50.0% | |
| AGCAAGCTAGAGGGAGAAGA+CGG | + | tig0025899:28938-28957 | Msa1425810:intron | 50.0% | |
| ACGATTGGACTACTCGTTCG+GGG | - | tig0025899:29153-29172 | None:intergenic | 50.0% | |
| AGGCTTGAGAAGCTTGGCAA+TGG | - | tig0025899:29887-29906 | None:intergenic | 50.0% | |
| GCGATTAGGCTTGAGAAGCT+TGG | - | tig0025899:29893-29912 | None:intergenic | 50.0% | |
| TCTCCAGGGAAAGGGATCCA+TGG | + | tig0025899:28865-28884 | Msa1425810:CDS | 55.0% | |
| CTCCAGGGAAAGGGATCCAT+GGG | + | tig0025899:28866-28885 | Msa1425810:CDS | 55.0% | |
| TCCAGGGAAAGGGATCCATG+GGG | + | tig0025899:28867-28886 | Msa1425810:CDS | 55.0% | |
| GGAAAGGGATCCATGGGGAT+CGG | + | tig0025899:28872-28891 | Msa1425810:CDS | 55.0% | |
| GAAAGGGATCCATGGGGATC+GGG | + | tig0025899:28873-28892 | Msa1425810:CDS | 55.0% | |
| CTCTTTCATCCCGATCCCCA+TGG | - | tig0025899:28885-28904 | None:intergenic | 55.0% | |
| CGATTGGACTACTCGTTCGG+GGG | - | tig0025899:29152-29171 | None:intergenic | 55.0% | |
| !! | ACTATGGCTCTGGCATCAGC+TGG | + | tig0025899:29697-29716 | Msa1425810:CDS | 55.0% |
| TCTCCAGGGAAAGGGATCCA+TGG | + | tig0025899:28865-28884 | Msa1425810:CDS | 55.0% | |
| CTCCAGGGAAAGGGATCCAT+GGG | + | tig0025899:28866-28885 | Msa1425810:CDS | 55.0% | |
| TCCAGGGAAAGGGATCCATG+GGG | + | tig0025899:28867-28886 | Msa1425810:CDS | 55.0% | |
| GGAAAGGGATCCATGGGGAT+CGG | + | tig0025899:28872-28891 | Msa1425810:CDS | 55.0% | |
| GAAAGGGATCCATGGGGATC+GGG | + | tig0025899:28873-28892 | Msa1425810:CDS | 55.0% | |
| CTCTTTCATCCCGATCCCCA+TGG | - | tig0025899:28885-28904 | None:intergenic | 55.0% | |
| CGATTGGACTACTCGTTCGG+GGG | - | tig0025899:29152-29171 | None:intergenic | 55.0% | |
| !! | ACTATGGCTCTGGCATCAGC+TGG | + | tig0025899:29697-29716 | Msa1425810:CDS | 55.0% |
| TCCCCATGGATCCCTTTCCC+TGG | - | tig0025899:28871-28890 | None:intergenic | 60.0% | |
| GCTCTGGCATCAGCTGGAGA+TGG | + | tig0025899:29703-29722 | Msa1425810:CDS | 60.0% | |
| TCCCCATGGATCCCTTTCCC+TGG | - | tig0025899:28871-28890 | None:intergenic | 60.0% | |
| GCTCTGGCATCAGCTGGAGA+TGG | + | tig0025899:29703-29722 | Msa1425810:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025899 | gene | 28845 | 29936 | 28845 | ID=Msa1425810;Name=Msa1425810 |
| tig0025899 | mRNA | 28845 | 29936 | 28845 | ID=Msa1425810-mRNA-1;Parent=Msa1425810;Name=Msa1425810-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|0.66|1|1|3|0|145 |
| tig0025899 | exon | 28845 | 28915 | 28845 | ID=Msa1425810-mRNA-1:exon:4482;Parent=Msa1425810-mRNA-1 |
| tig0025899 | exon | 29458 | 29581 | 29458 | ID=Msa1425810-mRNA-1:exon:4483;Parent=Msa1425810-mRNA-1 |
| tig0025899 | exon | 29694 | 29936 | 29694 | ID=Msa1425810-mRNA-1:exon:4484;Parent=Msa1425810-mRNA-1 |
| tig0025899 | CDS | 28845 | 28915 | 28845 | ID=Msa1425810-mRNA-1:cds;Parent=Msa1425810-mRNA-1 |
| tig0025899 | CDS | 29458 | 29581 | 29458 | ID=Msa1425810-mRNA-1:cds;Parent=Msa1425810-mRNA-1 |
| tig0025899 | CDS | 29694 | 29936 | 29694 | ID=Msa1425810-mRNA-1:cds;Parent=Msa1425810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
