AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0730890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0730890 MtrunA17_Chr5g0431581 96.786 560 17 1 1 559 1 560 0.0 1120
Msa0730890 MtrunA17_Chr5g0437681 60.317 567 217 3 1 559 1 567 0.0 736
Msa0730890 MtrunA17_Chr3g0114211 59.750 559 223 2 3 559 12 570 0.0 723
Msa0730890 MtrunA17_Chr5g0404361 52.491 562 253 6 3 559 59 611 0.0 601
Msa0730890 MtrunA17_Chr5g0404341 51.681 565 254 7 3 559 13 566 0.0 580
Msa0730890 MtrunA17_Chr7g0238351 51.332 563 248 8 16 559 26 581 0.0 570
Msa0730890 MtrunA17_Chr2g0278811 46.141 596 280 8 2 559 15 607 0.0 568
Msa0730890 MtrunA17_Chr7g0238941 51.670 569 254 10 7 559 15 578 0.0 564
Msa0730890 MtrunA17_Chr7g0238981 50.727 550 252 6 25 559 48 593 0.0 563
Msa0730890 MtrunA17_Chr7g0237491 50.000 576 259 10 4 559 14 580 0.0 559
Msa0730890 MtrunA17_Chr7g0237441 49.914 579 261 10 1 559 11 580 0.0 558
Msa0730890 MtrunA17_Chr5g0429511 48.940 566 269 8 4 559 3 558 0.0 558
Msa0730890 MtrunA17_Chr4g0005921 49.821 558 266 6 8 559 8 557 0.0 555
Msa0730890 MtrunA17_Chr3g0104061 50.547 548 255 7 17 559 20 556 0.0 546
Msa0730890 MtrunA17_Chr4g0031901 50.179 560 258 12 1 547 22 573 0.0 534
Msa0730890 MtrunA17_Chr7g0240971 49.472 568 271 8 4 559 7 570 0.0 531
Msa0730890 MtrunA17_Chr7g0240991 45.581 577 290 10 1 559 1 571 0.0 530
Msa0730890 MtrunA17_Chr4g0008521 48.263 547 268 6 26 559 28 572 0.0 527
Msa0730890 MtrunA17_Chr5g0436461 47.810 548 269 9 18 559 18 554 0.0 526
Msa0730890 MtrunA17_Chr8g0346581 43.604 555 302 7 12 559 21 571 4.01e-173 501
Msa0730890 MtrunA17_Chr3g0133861 48.148 324 160 5 226 542 1 323 1.80e-100 307
Msa0730890 MtrunA17_Chr3g0133871 53.804 184 84 1 22 205 31 213 6.31e-69 221
Msa0730890 MtrunA17_Chr3g0118321 31.034 580 305 22 4 534 9 542 4.12e-67 227
Msa0730890 MtrunA17_Chr8g0382691 30.986 568 332 18 16 550 24 564 9.03e-67 227
Msa0730890 MtrunA17_Chr3g0118331 29.217 575 349 19 4 549 9 554 9.44e-59 205
Msa0730890 MtrunA17_Chr5g0436431 45.690 232 111 7 292 517 6 228 2.90e-56 188
Msa0730890 MtrunA17_Chr3g0079321 27.355 552 360 16 5 541 8 533 2.32e-45 169
Msa0730890 MtrunA17_Chr4g0056511 27.241 569 376 17 4 559 6 549 2.87e-45 168
Msa0730890 MtrunA17_Chr4g0038671 28.098 573 341 21 8 559 10 532 1.10e-42 160
Msa0730890 MtrunA17_Chr3g0121161 26.381 561 341 16 4 541 47 558 6.26e-42 159
Msa0730890 MtrunA17_Chr4g0024861 27.768 569 351 18 6 559 7 530 7.38e-42 158
Msa0730890 MtrunA17_Chr3g0121151 27.125 553 347 18 4 541 47 558 1.26e-41 158
Msa0730890 MtrunA17_Chr4g0043251 27.768 551 321 19 2 525 3 503 5.66e-41 155
Msa0730890 MtrunA17_Chr3g0143671 28.397 574 351 20 1 559 5 533 6.06e-41 155
Msa0730890 MtrunA17_Chr3g0121171 27.125 553 347 18 4 541 1157 1668 9.51e-41 158
Msa0730890 MtrunA17_Chr3g0121171 27.289 557 341 19 4 541 582 1093 1.43e-40 158
Msa0730890 MtrunA17_Chr3g0121171 27.392 533 330 18 25 541 27 518 1.25e-39 155
Msa0730890 MtrunA17_Chr3g0121171 26.392 485 286 15 80 541 1798 2234 8.82e-34 137
Msa0730890 MtrunA17_Chr4g0043261 26.667 540 326 20 8 525 6 497 4.61e-40 153
Msa0730890 MtrunA17_Chr8g0374261 27.135 527 336 16 8 525 10 497 1.52e-39 151
Msa0730890 MtrunA17_Chr5g0402831 26.871 521 323 19 17 525 22 496 1.30e-38 149
Msa0730890 MtrunA17_Chr8g0374271 26.223 511 334 15 21 525 26 499 2.18e-38 148
Msa0730890 MtrunA17_Chr1g0157341 26.353 573 358 15 4 559 7 532 2.48e-38 148
Msa0730890 MtrunA17_Chr2g0322441 28.893 533 322 18 39 559 46 533 4.58e-38 147
Msa0730890 MtrunA17_Chr7g0234061 26.488 521 326 16 25 524 30 514 2.09e-34 137
Msa0730890 MtrunA17_Chr4g0075071 27.385 566 355 20 7 559 12 534 4.31e-32 130
Msa0730890 MtrunA17_Chr4g0024641 28.364 483 293 18 87 559 14 453 1.51e-28 120
Msa0730890 MtrunA17_Chr3g0118351 29.942 344 189 11 236 549 5 326 1.02e-27 114
Msa0730890 MtrunA17_Chr3g0118341 38.272 162 93 6 4 163 9 165 3.52e-27 109
Msa0730890 MtrunA17_Chr1g0197311 28.743 167 86 4 38 172 38 203 3.74e-15 75.5
Msa0730890 MtrunA17_Chr3g0118931 37.363 91 52 2 469 559 10 95 7.25e-14 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0730890 AT2G30210.1 69.982 563 160 2 5 559 9 570 0.0 828
Msa0730890 AT5G07130.1 65.263 570 186 5 1 559 1 569 0.0 761
Msa0730890 AT5G05390.1 60.428 561 215 5 3 559 8 565 0.0 719
Msa0730890 AT2G40370.1 58.333 576 222 4 2 559 5 580 0.0 716
Msa0730890 AT5G07130.2 67.835 485 144 5 86 559 1 484 0.0 666
Msa0730890 AT5G07130.3 67.835 485 144 5 86 559 1 484 0.0 666
Msa0730890 AT2G29130.1 52.182 573 253 9 4 559 5 573 0.0 576
Msa0730890 AT5G09360.1 49.378 563 273 7 1 559 15 569 0.0 575
Msa0730890 AT5G03260.1 50.802 561 260 7 4 559 8 557 0.0 565
Msa0730890 AT5G60020.1 51.607 560 238 10 25 559 26 577 0.0 564
Msa0730890 AT5G60020.3 52.364 550 229 10 35 559 4 545 0.0 561
Msa0730890 AT2G38080.1 49.559 567 269 8 1 559 1 558 0.0 553
Msa0730890 AT5G58910.2 48.763 566 271 6 4 559 11 567 0.0 543
Msa0730890 AT5G58910.3 48.763 566 270 7 4 559 11 566 0.0 541
Msa0730890 AT5G01190.1 49.643 560 269 6 5 559 7 558 0.0 536
Msa0730890 AT2G46570.1 45.730 562 294 7 5 559 12 569 0.0 524
Msa0730890 AT3G09220.1 49.275 552 258 9 4 542 8 550 0.0 523
Msa0730890 AT5G58910.1 49.531 533 244 6 37 559 6 523 0.0 521
Msa0730890 AT5G01190.2 51.145 524 244 5 41 559 28 544 0.0 521
Msa0730890 AT1G18140.1 47.080 565 271 9 17 559 23 581 6.58e-177 512
Msa0730890 AT5G60020.2 51.544 518 218 10 25 517 26 535 4.80e-176 508
Msa0730890 AT5G01040.1 45.357 560 287 7 11 559 15 566 9.27e-172 499
Msa0730890 AT5G48100.1 45.149 536 280 9 24 549 22 553 4.61e-168 489
Msa0730890 AT5G01050.1 44.840 562 289 7 11 559 15 568 1.11e-166 486
Msa0730890 AT2G46570.2 45.979 485 252 6 81 559 4 484 3.18e-156 456
Msa0730890 AT3G09220.2 49.455 459 212 8 97 542 2 453 9.90e-149 436
Msa0730890 AT5G21100.1 31.461 534 302 18 39 538 39 542 5.26e-69 233
Msa0730890 AT4G39830.1 31.171 555 303 21 39 549 51 570 3.04e-67 228
Msa0730890 AT5G21105.1 30.823 571 323 22 5 537 22 558 6.98e-65 222
Msa0730890 AT5G21105.3 30.309 551 312 22 5 517 22 538 2.62e-55 195
Msa0730890 AT4G39830.3 30.118 508 277 20 85 549 1 473 1.09e-49 179
Msa0730890 AT4G39830.2 30.159 504 274 20 89 549 7 475 5.80e-49 177
Msa0730890 AT1G75790.1 27.850 535 330 16 1 519 1 495 6.39e-48 175
Msa0730890 AT4G25240.2 29.072 571 358 18 4 559 12 550 1.99e-46 172
Msa0730890 AT4G25240.1 29.072 571 358 18 4 559 12 550 1.99e-46 172
Msa0730890 AT4G39830.4 29.423 503 266 19 89 549 7 462 3.23e-45 166
Msa0730890 AT4G12420.1 27.664 535 351 14 5 527 6 516 5.17e-45 168
Msa0730890 AT4G12420.2 27.664 535 351 14 5 527 6 516 5.17e-45 168
Msa0730890 AT5G66920.1 27.568 555 328 17 25 559 38 538 2.22e-43 162
Msa0730890 AT1G21850.1 28.676 544 303 18 8 525 12 496 9.70e-43 161
Msa0730890 AT5G51480.1 26.738 561 370 17 14 559 16 550 7.72e-42 159
Msa0730890 AT5G48450.2 27.013 559 355 19 8 556 13 528 1.25e-41 158
Msa0730890 AT5G48450.1 26.950 564 349 20 8 556 13 528 2.20e-41 158
Msa0730890 AT1G21860.1 26.493 536 326 15 8 525 11 496 7.13e-40 152
Msa0730890 AT4G22010.1 26.895 554 366 14 11 559 11 530 1.60e-39 152
Msa0730890 AT1G76160.1 27.419 558 360 17 8 559 12 530 4.74e-39 150
Msa0730890 AT1G41830.1 26.018 565 367 16 3 559 10 531 7.22e-38 147
Msa0730890 AT4G28090.1 25.603 539 333 15 6 524 9 499 3.20e-37 145
Msa0730890 AT2G23630.2 29.412 527 321 19 42 559 53 537 1.00e-35 141
Msa0730890 AT2G23630.1 29.412 527 321 19 42 559 48 532 1.09e-35 140
Msa0730890 AT1G55570.1 25.599 543 328 16 4 519 7 500 1.80e-35 140
Msa0730890 AT4G38420.1 26.022 538 337 18 6 524 9 504 9.45e-34 135
Msa0730890 AT4G37160.1 27.224 562 368 16 2 559 10 534 1.62e-33 134
Msa0730890 AT5G21105.2 30.205 341 202 11 209 537 51 367 9.67e-33 130
Msa0730890 AT3G13390.1 25.479 522 311 17 25 519 29 499 2.18e-31 128
Msa0730890 AT1G55560.1 25.281 534 339 19 4 519 5 496 1.91e-30 125
Msa0730890 AT3G13400.2 25.234 535 338 20 4 519 6 497 2.60e-29 122
Msa0730890 AT3G13400.1 25.234 535 338 20 4 519 6 497 2.60e-29 122
Msa0730890 AT4G38420.3 25.781 512 319 18 6 498 9 478 9.33e-29 120
Msa0730890 AT4G38420.2 31.047 277 178 7 6 278 9 276 2.79e-28 118
Msa0730890 AT4G37160.2 28.990 307 197 6 2 305 10 298 1.37e-25 110

Find 148 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCGAAACACTTTAATTT+TGG 0.112254 5_1:+40798332 None:intergenic
CCTTGACACCTTGGACTATT+AGG 0.188458 5_1:+40798255 None:intergenic
TTTATAGTTGGTTCAGGTTT+TGG 0.221678 5_1:-40797934 Msa0730890:CDS
GCCACCATAGTGTTCCTTCT+TGG 0.231177 5_1:+40799697 None:intergenic
AATTGACCTTGGTACAATTA+TGG 0.233819 5_1:+40797262 None:intergenic
GTCTCGAAGGTGGTCTATTT+TGG 0.254779 5_1:+40798430 None:intergenic
CGAAGGATACTCACCGTAAA+TGG 0.256488 5_1:-40800047 Msa0730890:CDS
AATTGAGTGACATATAATTT+AGG 0.259688 5_1:+40797344 None:intergenic
ATTGTTGTGAATCAGGAATT+TGG 0.267922 5_1:-40797508 Msa0730890:intron
AAGTTGTTCAAGTTGAAATA+TGG 0.300472 5_1:-40798039 Msa0730890:CDS
AGAGAATTTCCCGTTCTTCT+TGG 0.306078 5_1:-40799582 Msa0730890:intron
AATGGTAAAGCCGGCAAAAT+AGG 0.318344 5_1:+40798408 None:intergenic
GCTTACTACAATGGTGTTCC+TGG 0.329058 5_1:-40798156 Msa0730890:CDS
CTCCATAGACAGTGGCTCTT+AGG 0.334059 5_1:+40799658 None:intergenic
AACGTAGCAGGATCAGTTCT+TGG 0.335909 5_1:+40797901 None:intergenic
AAGGTCCAGCATTTGTTACT+TGG 0.341260 5_1:+40799973 None:intergenic
ACATAGATTCACATCTCAAT+TGG 0.345519 5_1:-40797472 Msa0730890:CDS
GCCAGGAAACTGTCCATTTA+CGG 0.347312 5_1:+40800034 None:intergenic
CCGTCCCTCGCTTCGATCGT+TGG 0.351478 5_1:+40800011 None:intergenic
TTCCTAAGAGCCACTGTCTA+TGG 0.354270 5_1:-40799660 Msa0730890:CDS
GGGTTTGGCAACAGCACTTT+TGG 0.375326 5_1:-40797450 Msa0730890:CDS
TTCACATCTCAATTGGGGTT+TGG 0.376065 5_1:-40797465 Msa0730890:CDS
CATAGATTCACATCTCAATT+GGG 0.380545 5_1:-40797471 Msa0730890:CDS
CCATTTGGTCCTTGACACCT+TGG 0.385637 5_1:+40798246 None:intergenic
GCTGCAAATCTTGTTCCATT+TGG 0.386553 5_1:+40798231 None:intergenic
TGCATTAAGGAAGTTGTTCT+AGG 0.389050 5_1:+40798180 None:intergenic
ATGCATTATACCTGGATTAT+CGG 0.389442 5_1:+40797804 None:intergenic
ATAATTGTACCAAGGTCAAT+TGG 0.393944 5_1:-40797260 Msa0730890:three_prime_UTR
ACCGTAAATGGACAGTTTCC+TGG 0.396378 5_1:-40800035 Msa0730890:CDS
GTTGTCAAATGCAGCATTCA+TGG 0.401840 5_1:+40798479 None:intergenic
GAATGATTTCAAACCTTGGC+TGG 0.402430 5_1:+40798981 None:intergenic
ATGGGTCGCCATTCGTTTCA+AGG 0.412325 5_1:-40797827 Msa0730890:CDS
CCACCTGTGAGGAATACTAT+TGG 0.412353 5_1:-40797865 Msa0730890:CDS
ATCTCCTGGTTGACCGTTCA+TGG 0.413530 5_1:+40799017 None:intergenic
CGTCCCTCGCTTCGATCGTT+GGG 0.413929 5_1:+40800012 None:intergenic
TGTGCAACAGGCATGGGCTT+AGG 0.415052 5_1:-40799815 Msa0730890:intron
GCATTCACATCAAGGATTAG+AGG 0.421253 5_1:-40798360 Msa0730890:CDS
TTATTGTTCACTGTAGGGTT+AGG 0.421636 5_1:-40798297 Msa0730890:CDS
ATGCAGCATTCATGGCGGTT+TGG 0.436299 5_1:+40798487 None:intergenic
GAGGTATCACTGACTGTAAT+GGG 0.438774 5_1:+40797411 None:intergenic
TTGAACTGTATAGGAGGAAC+AGG 0.439285 5_1:+40798111 None:intergenic
GATCACCCTATGCATGTTCA+TGG 0.442341 5_1:-40797967 Msa0730890:CDS
GAAATGTTCCTAGGGGTTTG+TGG 0.445135 5_1:-40798080 Msa0730890:CDS
TCTCTAGTTGGCTTAGAGAA+AGG 0.447045 5_1:+40799600 None:intergenic
TGAAGATTACCAAGAAGAAC+GGG 0.448241 5_1:+40799573 None:intergenic
AGAACGGGAAATTCTCTAGT+TGG 0.448541 5_1:+40799588 None:intergenic
CTCGCTTCGATCGTTGGGCC+AGG 0.448652 5_1:+40800017 None:intergenic
ATTACACAGGAAATGTTCCT+AGG 0.452764 5_1:-40798089 Msa0730890:CDS
CGTTTCAAGGCCGATAATCC+AGG 0.464778 5_1:-40797814 Msa0730890:intron
CCTGTGTAATTGAACTGTAT+AGG 0.466472 5_1:+40798102 None:intergenic
CTGCAAAACAATTTGAACAT+TGG 0.467774 5_1:+40798014 None:intergenic
GTTTGTCTTAAGAGAGCCAT+TGG 0.471023 5_1:+40799081 None:intergenic
CCAAGGTGTCAAGGACCAAA+TGG 0.477385 5_1:-40798246 Msa0730890:CDS
GTGTATGCAACAGATACATT+TGG 0.482818 5_1:+40799039 None:intergenic
GTGAGTTTATTGTTCACTGT+AGG 0.484623 5_1:-40798303 Msa0730890:CDS
TAATTGTACCAAGGTCAATT+GGG 0.489561 5_1:-40797259 Msa0730890:three_prime_UTR
TAACTTCCACCTGGTTGGAT+TGG 0.489901 5_1:+40799744 None:intergenic
ATTGTAGTAAGCTTGCATTA+AGG 0.490056 5_1:+40798167 None:intergenic
TCGACAAGGTTGAACGTAGC+AGG 0.491890 5_1:+40797889 None:intergenic
TGAGTTTATTGTTCACTGTA+GGG 0.502703 5_1:-40798302 Msa0730890:CDS
AACACTAGAGTCCTCATGAT+AGG 0.504563 5_1:-40798585 Msa0730890:CDS
GGAGGTATCACTGACTGTAA+TGG 0.504892 5_1:+40797410 None:intergenic
TTGGAACACCTCCTGGTGGA+TGG 0.505700 5_1:-40797846 Msa0730890:CDS
AATACTATTGGAACACCTCC+TGG 0.507986 5_1:-40797853 Msa0730890:CDS
CTCTATAGATGTTCCAGCCA+AGG 0.510832 5_1:-40798994 Msa0730890:intron
TGGAACACCTCCTGGTGGAT+GGG 0.516621 5_1:-40797845 Msa0730890:CDS
AAAACCAAGAAGGAACACTA+TGG 0.519751 5_1:-40799701 Msa0730890:CDS
CAGTGGATGGAGATGTTGTA+AGG 0.523772 5_1:+40799954 None:intergenic
GTCACAGCCGATCAACCACC+TGG 0.528760 5_1:-40798537 Msa0730890:CDS
TTGAAGATTACCAAGAAGAA+CGG 0.530236 5_1:+40799572 None:intergenic
GCTGCCATGTAGTATCGGCC+AGG 0.530922 5_1:+40798519 None:intergenic
CTGCAACTGCATTCACATCA+AGG 0.532127 5_1:-40798368 Msa0730890:CDS
TGGAACCCATGAACATGCAT+AGG 0.532961 5_1:+40797961 None:intergenic
GTGATCCAAGTAACAAATGC+TGG 0.533819 5_1:-40799978 Msa0730890:CDS
GAACATCTATAGAGATCTCC+TGG 0.536997 5_1:+40799003 None:intergenic
TGAGGTAGATCTGGTGGTGG+AGG 0.538755 5_1:+40797392 None:intergenic
GGACATTGTGTCACATAACT+AGG 0.539105 5_1:+40799765 None:intergenic
TTTACAATTCAAAACCAAGA+AGG 0.543934 5_1:-40799711 Msa0730890:CDS
TGTTTCATTTGCTGCAGCAG+AGG 0.548223 5_1:-40800214 Msa0730890:CDS
ATATTTCAACTTGAACAACT+TGG 0.548915 5_1:+40798041 None:intergenic
CGATGATAGTTACCAGTGGA+TGG 0.549490 5_1:+40799941 None:intergenic
GTATCGGCCAGGTGGTTGAT+CGG 0.551980 5_1:+40798530 None:intergenic
TATCATGAGGACTCTAGTGT+TGG 0.554372 5_1:+40798587 None:intergenic
TTGAGAAATCCATGGGCAGA+TGG 0.554935 5_1:-40799789 Msa0730890:CDS
CTAGGTGTCCACAAACCCCT+AGG 0.555841 5_1:+40798072 None:intergenic
CGCGTGCTGCCATGTAGTAT+CGG 0.558373 5_1:+40798514 None:intergenic
GACATATACTTGAAAACGTA+CGG 0.558442 5_1:+40798725 None:intergenic
ATGTGTAACTTCCACCTGGT+TGG 0.559503 5_1:+40799739 None:intergenic
TTACACAGGAAATGTTCCTA+GGG 0.560206 5_1:-40798088 Msa0730890:CDS
ACCACCTGGCCGATACTACA+TGG 0.560583 5_1:-40798523 Msa0730890:CDS
CCTAATAGTCCAAGGTGTCA+AGG 0.568344 5_1:-40798255 Msa0730890:CDS
TAGCATTGAGGTAGATCTGG+TGG 0.573248 5_1:+40797386 None:intergenic
CGAATGGCGACCCATCCACC+AGG 0.580203 5_1:+40797835 None:intergenic
ATGGTTTGATAGAGATCCAA+TGG 0.580804 5_1:-40799097 Msa0730890:CDS
GGTTTGTGGACACCTAGAAA+AGG 0.582031 5_1:-40798066 Msa0730890:CDS
TACTAGTATAGTAACAATTG+AGG 0.584246 5_1:-40797989 Msa0730890:CDS
TTAAGACAAACACAGTTCAC+AGG 0.584771 5_1:-40799069 Msa0730890:CDS
CGGTATGTGTAACTTCCACC+TGG 0.585408 5_1:+40799735 None:intergenic
TACACCATGAACGGTCAACC+AGG 0.586391 5_1:-40799021 Msa0730890:CDS
CAAGTAATCCCAATTGACCT+TGG 0.586837 5_1:+40797251 None:intergenic
ATGAGGACTCTAGTGTTGGA+AGG 0.587715 5_1:+40798591 None:intergenic
TATGCAACAGATACATTTGG+AGG 0.588595 5_1:+40799042 None:intergenic
TTAATGCAAGCTTACTACAA+TGG 0.590912 5_1:-40798165 Msa0730890:CDS
TTCAAACTGCAACAGTGAAG+AGG 0.591115 5_1:-40800082 Msa0730890:CDS
ATCACCCTATGCATGTTCAT+GGG 0.594471 5_1:-40797966 Msa0730890:CDS
GTGGTTGATCGGCTGTGACA+AGG 0.595575 5_1:+40798541 None:intergenic
ATAGATTCACATCTCAATTG+GGG 0.596176 5_1:-40797470 Msa0730890:CDS
CCAACGATCGAAGCGAGGGA+CGG 0.596308 5_1:-40800011 Msa0730890:CDS
GCCGGCAAAATAGGTCTCGA+AGG 0.598354 5_1:+40798417 None:intergenic
CAGAATGACTGTTGTTGCTA+CGG 0.601727 5_1:-40798631 Msa0730890:CDS
TGGCCCAACGATCGAAGCGA+GGG 0.604197 5_1:-40800015 Msa0730890:CDS
AGGACATTGATTGTTTGACC+TGG 0.607085 5_1:+40798561 None:intergenic
AAACACTTACAACAAACTGA+TGG 0.608462 5_1:+40800184 None:intergenic
CATTGAGGTAGATCTGGTGG+TGG 0.610540 5_1:+40797389 None:intergenic
GCACAAATCCTAATAGTCCA+AGG 0.611114 5_1:-40798263 Msa0730890:CDS
TTAGGATGTTGAGAAATCCA+TGG 0.611446 5_1:-40799797 Msa0730890:CDS
TTTGACCTGGTCCTATCATG+AGG 0.614547 5_1:+40798574 None:intergenic
GTGTAATTGAACTGTATAGG+AGG 0.616090 5_1:+40798105 None:intergenic
CTGGCCCAACGATCGAAGCG+AGG 0.616399 5_1:-40800016 Msa0730890:CDS
GGAACCCATGAACATGCATA+GGG 0.618003 5_1:+40797962 None:intergenic
CCTATACAGTTCAATTACAC+AGG 0.618962 5_1:-40798102 Msa0730890:CDS
CTATGGTGGCATGCTCACAC+TGG 0.620025 5_1:-40799684 Msa0730890:CDS
TAGGATGTTGAGAAATCCAT+GGG 0.620108 5_1:-40799796 Msa0730890:CDS
ATTATCGGCCTTGAAACGAA+TGG 0.624949 5_1:+40797819 None:intergenic
CCAATAGTATTCCTCACAGG+TGG 0.626541 5_1:+40797865 None:intergenic
TAACTAGGTCCATCTGCCCA+TGG 0.627031 5_1:+40799780 None:intergenic
CTTACAACATCTCCATCCAC+TGG 0.628162 5_1:-40799953 Msa0730890:intron
TCCTCACAGGTGGATCGACA+AGG 0.628411 5_1:+40797875 None:intergenic
AGAGTCCTCATGATAGGACC+AGG 0.629037 5_1:-40798579 Msa0730890:CDS
GTTCCAATAGTATTCCTCAC+AGG 0.630506 5_1:+40797862 None:intergenic
AACTGTATAGGAGGAACAGG+AGG 0.636960 5_1:+40798114 None:intergenic
ACACAATGTCCAATCCAACC+AGG 0.647850 5_1:-40799753 Msa0730890:CDS
TCTGTTGCATACACCATGAA+CGG 0.651763 5_1:-40799030 Msa0730890:CDS
CAAGGTCCATAATTGTACCA+AGG 0.661063 5_1:-40797268 Msa0730890:three_prime_UTR
TACACAGGAAATGTTCCTAG+GGG 0.663460 5_1:-40798087 Msa0730890:CDS
TGATGTGAATGCAGTTGCAG+TGG 0.665699 5_1:+40798371 None:intergenic
ACCAAGAAGGAACACTATGG+TGG 0.666226 5_1:-40799698 Msa0730890:CDS
TAGCAACAACAGTCATTCTG+TGG 0.668466 5_1:+40798634 None:intergenic
GGCAAAATAGGTCTCGAAGG+TGG 0.670490 5_1:+40798420 None:intergenic
AATGAAAGCTCCATAGACAG+TGG 0.677360 5_1:+40799650 None:intergenic
ACTATTGGAACACCTCCTGG+TGG 0.679776 5_1:-40797850 Msa0730890:CDS
ACCTTGTCGATCCACCTGTG+AGG 0.686020 5_1:-40797876 Msa0730890:CDS
GTCAAATGCAGCATTCATGG+CGG 0.689483 5_1:+40798482 None:intergenic
CAATGTCCAATCCAACCAGG+TGG 0.711993 5_1:-40799750 Msa0730890:CDS
ATGGCGACCCATCCACCAGG+AGG 0.719284 5_1:+40797838 None:intergenic
AGAGGCTGTGCAAAACACGA+AGG 0.719687 5_1:-40800064 Msa0730890:CDS
GCCATGTAGTATCGGCCAGG+TGG 0.720037 5_1:+40798522 None:intergenic
AGGAACAGGAGGAAAATCTG+TGG 0.731627 5_1:+40798125 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTTTTCTGTAATATAA+AGG + chr5_1:40798594-40798613 None:intergenic 10.0%
!! TTTCATTATTTATCCAAAAA+TGG - chr5_1:40797852-40797871 Msa0730890:CDS 15.0%
!! TTCATTATTTATCCAAAAAT+GGG - chr5_1:40797853-40797872 Msa0730890:CDS 15.0%
!! AAAAAGAAATACAATCTATA+TGG + chr5_1:40800189-40800208 None:intergenic 15.0%
!!! TAAATACCAAGTTTGAAATA+TGG - chr5_1:40798118-40798137 Msa0730890:CDS 20.0%
!! TATTAAGAAGTTAAACTAGA+GGG + chr5_1:40798287-40798306 None:intergenic 20.0%
!! TTATTAAGAAGTTAAACTAG+AGG + chr5_1:40798288-40798307 None:intergenic 20.0%
!! AAAAACATATTCTGTCAATA+TGG + chr5_1:40798354-40798373 None:intergenic 20.0%
!!! AATATGTTTTTATGATGCAT+AGG - chr5_1:40798363-40798382 Msa0730890:CDS 20.0%
!!! ATATGTTTTTATGATGCATA+GGG - chr5_1:40798364-40798383 Msa0730890:CDS 20.0%
!! AAACTCAATCCTTTATATTA+CGG - chr5_1:40798654-40798673 Msa0730890:CDS 20.0%
!! TATAAAAACAATTACAATGC+AGG - chr5_1:40798736-40798755 Msa0730890:intron 20.0%
!!! ATTTCGAAACACTTTAATTT+TGG + chr5_1:40799157-40799176 None:intergenic 20.0%
!!! ATGTGAATGTTTTTAAATCA+TGG - chr5_1:40799867-40799886 Msa0730890:intron 20.0%
!! AATTGAGTGACATATAATTT+AGG + chr5_1:40800145-40800164 None:intergenic 20.0%
!!! ACTATTTTATGCTACTTACT+TGG - chr5_1:40797234-40797253 Msa0730890:three_prime_UTR 25.0%
! TAGTTAATACAGTTGCAAAT+TGG + chr5_1:40797360-40797379 None:intergenic 25.0%
! TAACTAACTTTAATGATTGC+TGG - chr5_1:40797374-40797393 Msa0730890:exon 25.0%
!! AAGTATTTAAGACCATAATG+AGG + chr5_1:40797579-40797598 None:intergenic 25.0%
! ATAGTGAATGTTTGGATAAA+CGG + chr5_1:40797624-40797643 None:intergenic 25.0%
!!! CTTGGTTTTGAATTGTAAAT+CGG + chr5_1:40797774-40797793 None:intergenic 25.0%
! TTTACAATTCAAAACCAAGA+AGG - chr5_1:40797775-40797794 Msa0730890:intron 25.0%
! TTTGATAAACTGTTCGAAAT+AGG - chr5_1:40797973-40797992 Msa0730890:CDS 25.0%
! ATTAAGAAGTTAAACTAGAG+GGG + chr5_1:40798286-40798305 None:intergenic 25.0%
!!! TATGTTTTTATGATGCATAG+GGG - chr5_1:40798365-40798384 Msa0730890:CDS 25.0%
!! TTTAGAATGATTTCAAACCT+TGG + chr5_1:40798512-40798531 None:intergenic 25.0%
!! GTTGATAAAAAAGTGACTAA+AGG - chr5_1:40798713-40798732 Msa0730890:CDS 25.0%
!!! TTTACCATTTTTTAACGACA+CGG - chr5_1:40799092-40799111 Msa0730890:CDS 25.0%
! ATATTTCAACTTGAACAACT+TGG + chr5_1:40799448-40799467 None:intergenic 25.0%
!!! AAGTTGTTCAAGTTGAAATA+TGG - chr5_1:40799447-40799466 Msa0730890:intron 25.0%
! TACTAGTATAGTAACAATTG+AGG - chr5_1:40799497-40799516 Msa0730890:intron 25.0%
! CTGAACCAACTATAAAAAAA+TGG + chr5_1:40799548-40799567 None:intergenic 25.0%
!!! CATTTTTTTATAGTTGGTTC+AGG - chr5_1:40799546-40799565 Msa0730890:intron 25.0%
! TAACATAAATGCATTATACC+TGG + chr5_1:40799693-40799712 None:intergenic 25.0%
! TGAATTCAAAAATCAGCATT+TGG + chr5_1:40799959-40799978 None:intergenic 25.0%
!!! ATGCTTTTATTTTAGCATTG+AGG + chr5_1:40800115-40800134 None:intergenic 25.0%
!! TTTCTTTTTGTGATGTTTCA+AGG - chr5_1:40800200-40800219 Msa0730890:CDS 25.0%
AAACACTTACAACAAACTGA+TGG + chr5_1:40797305-40797324 None:intergenic 30.0%
TAGTGAATGTTTGGATAAAC+GGG + chr5_1:40797623-40797642 None:intergenic 30.0%
TTGAAGATTACCAAGAAGAA+CGG + chr5_1:40797917-40797936 None:intergenic 30.0%
TCCAAATCCAAATCGAAATT+CGG + chr5_1:40798080-40798099 None:intergenic 30.0%
AATGGTCCATATTTCAAACT+TGG + chr5_1:40798127-40798146 None:intergenic 30.0%
GACCATTCAATCTTTATCAA+TGG - chr5_1:40798140-40798159 Msa0730890:CDS 30.0%
! TTTATCAATGGCCATTGATT+TGG - chr5_1:40798152-40798171 Msa0730890:CDS 30.0%
AAAACGATGTATGGAAGTAA+TGG + chr5_1:40798538-40798557 None:intergenic 30.0%
! CTGCAATTTAAAACGATGTA+TGG + chr5_1:40798547-40798566 None:intergenic 30.0%
GACATATACTTGAAAACGTA+CGG + chr5_1:40798764-40798783 None:intergenic 30.0%
!!! GTACGTTTTCAAGTATATGT+CGG - chr5_1:40798763-40798782 Msa0730890:intron 30.0%
TCGTTAAAAAATGGTAAAGC+CGG + chr5_1:40799090-40799109 None:intergenic 30.0%
TGAGTTTATTGTTCACTGTA+GGG - chr5_1:40799184-40799203 Msa0730890:intron 30.0%
ATTGTAGTAAGCTTGCATTA+AGG + chr5_1:40799322-40799341 None:intergenic 30.0%
TTAATGCAAGCTTACTACAA+TGG - chr5_1:40799321-40799340 Msa0730890:intron 30.0%
CTGCAAAACAATTTGAACAT+TGG + chr5_1:40799475-40799494 None:intergenic 30.0%
!! CAATGTTCAAATTGTTTTGC+AGG - chr5_1:40799473-40799492 Msa0730890:intron 30.0%
!!! GGGTTCCATTTTTTTATAGT+TGG - chr5_1:40799540-40799559 Msa0730890:intron 30.0%
!! TTTATAGTTGGTTCAGGTTT+TGG - chr5_1:40799552-40799571 Msa0730890:intron 30.0%
ATGCATTATACCTGGATTAT+CGG + chr5_1:40799685-40799704 None:intergenic 30.0%
TAAAACACTGACACAAACAT+CGG + chr5_1:40799841-40799860 None:intergenic 30.0%
! TGTTTGTGTCAGTGTTTTAT+AGG - chr5_1:40799842-40799861 Msa0730890:intron 30.0%
!! ATGTTTTTAAATCATGGTCG+CGG - chr5_1:40799873-40799892 Msa0730890:intron 30.0%
TCTCTTGCATAGTTTATACT+AGG - chr5_1:40799909-40799928 Msa0730890:intron 30.0%
TGAATTCATTGTTGTGAATC+AGG - chr5_1:40799971-40799990 Msa0730890:CDS 30.0%
ATTGTTGTGAATCAGGAATT+TGG - chr5_1:40799978-40799997 Msa0730890:CDS 30.0%
ACATAGATTCACATCTCAAT+TGG - chr5_1:40800014-40800033 Msa0730890:CDS 30.0%
CATAGATTCACATCTCAATT+GGG - chr5_1:40800015-40800034 Msa0730890:CDS 30.0%
ATAGATTCACATCTCAATTG+GGG - chr5_1:40800016-40800035 Msa0730890:CDS 30.0%
AATTGACCTTGGTACAATTA+TGG + chr5_1:40800227-40800246 None:intergenic 30.0%
ATAATTGTACCAAGGTCAAT+TGG - chr5_1:40800226-40800245 Msa0730890:CDS 30.0%
TAATTGTACCAAGGTCAATT+GGG - chr5_1:40800227-40800246 Msa0730890:CDS 30.0%
TCAGGAACATAGTGAATGTT+TGG + chr5_1:40797632-40797651 None:intergenic 35.0%
AGACACATAAGAAGATTGTC+AGG + chr5_1:40797650-40797669 None:intergenic 35.0%
TTAGGATGTTGAGAAATCCA+TGG - chr5_1:40797689-40797708 Msa0730890:intron 35.0%
TAGGATGTTGAGAAATCCAT+GGG - chr5_1:40797690-40797709 Msa0730890:intron 35.0%
AAAACCAAGAAGGAACACTA+TGG - chr5_1:40797785-40797804 Msa0730890:intron 35.0%
TGAAGATTACCAAGAAGAAC+GGG + chr5_1:40797916-40797935 None:intergenic 35.0%
TTTGCAGTAACAATCTCATG+CGG - chr5_1:40798006-40798025 Msa0730890:CDS 35.0%
!! TCCGAATTTCGATTTGGATT+TGG - chr5_1:40798076-40798095 Msa0730890:CDS 35.0%
GGCCATTGATAAAGATTGAA+TGG + chr5_1:40798145-40798164 None:intergenic 35.0%
! TTTTATGATGCATAGGGGAA+TGG - chr5_1:40798370-40798389 Msa0730890:CDS 35.0%
ATGGTTTGATAGAGATCCAA+TGG - chr5_1:40798389-40798408 Msa0730890:CDS 35.0%
TTAAGACAAACACAGTTCAC+AGG - chr5_1:40798417-40798436 Msa0730890:CDS 35.0%
TATGCAACAGATACATTTGG+AGG + chr5_1:40798447-40798466 None:intergenic 35.0%
GTGTATGCAACAGATACATT+TGG + chr5_1:40798450-40798469 None:intergenic 35.0%
!! ACATCGTTTTAAATTGCAGC+TGG - chr5_1:40798548-40798567 Msa0730890:CDS 35.0%
TGTCTGCAACCGTAATATAA+AGG + chr5_1:40798666-40798685 None:intergenic 35.0%
GTGAGTTTATTGTTCACTGT+AGG - chr5_1:40799183-40799202 Msa0730890:intron 35.0%
TTATTGTTCACTGTAGGGTT+AGG - chr5_1:40799189-40799208 Msa0730890:intron 35.0%
TGCATTAAGGAAGTTGTTCT+AGG + chr5_1:40799309-40799328 None:intergenic 35.0%
AAATCTGTGGTAAAAACACC+AGG + chr5_1:40799351-40799370 None:intergenic 35.0%
GTGTAATTGAACTGTATAGG+AGG + chr5_1:40799384-40799403 None:intergenic 35.0%
CCTGTGTAATTGAACTGTAT+AGG + chr5_1:40799387-40799406 None:intergenic 35.0%
CCTATACAGTTCAATTACAC+AGG - chr5_1:40799384-40799403 Msa0730890:intron 35.0%
ATTACACAGGAAATGTTCCT+AGG - chr5_1:40799397-40799416 Msa0730890:intron 35.0%
TTACACAGGAAATGTTCCTA+GGG - chr5_1:40799398-40799417 Msa0730890:intron 35.0%
! AACAACTTGGTTCCTTTTCT+AGG + chr5_1:40799435-40799454 None:intergenic 35.0%
ACTATGCAAGAGAGAGATAT+CGG + chr5_1:40799902-40799921 None:intergenic 35.0%
! ACAGCACTTTTGGTAGAAAA+TGG - chr5_1:40800046-40800065 Msa0730890:CDS 35.0%
! CTTTTGGTAGAAAATGGAGT+TGG - chr5_1:40800052-40800071 Msa0730890:CDS 35.0%
!! TTTTAGCATTGAGGTAGATC+TGG + chr5_1:40800106-40800125 None:intergenic 35.0%
TTCAAACTGCAACAGTGAAG+AGG - chr5_1:40797404-40797423 Msa0730890:CDS 40.0%
GTGATCCAAGTAACAAATGC+TGG - chr5_1:40797508-40797527 Msa0730890:intron 40.0%
! AAGGTCCAGCATTTGTTACT+TGG + chr5_1:40797516-40797535 None:intergenic 40.0%
CTTATGTGTCTTTGTGCAAC+AGG - chr5_1:40797659-40797678 Msa0730890:intron 40.0%
GGACATTGTGTCACATAACT+AGG + chr5_1:40797724-40797743 None:intergenic 40.0%
AATGAAAGCTCCATAGACAG+TGG + chr5_1:40797839-40797858 None:intergenic 40.0%
! GGATAAGCAGAACCCATTTT+TGG + chr5_1:40797868-40797887 None:intergenic 40.0%
! TCTCTAGTTGGCTTAGAGAA+AGG + chr5_1:40797889-40797908 None:intergenic 40.0%
AGAACGGGAAATTCTCTAGT+TGG + chr5_1:40797901-40797920 None:intergenic 40.0%
AGAGAATTTCCCGTTCTTCT+TGG - chr5_1:40797904-40797923 Msa0730890:CDS 40.0%
AATCTTGATCCAATCGACCA+TGG + chr5_1:40798050-40798069 None:intergenic 40.0%
ATGGTCGATTGGATCAAGAT+TGG - chr5_1:40798049-40798068 Msa0730890:CDS 40.0%
TCGATTGGATCAAGATTGGA+CGG - chr5_1:40798053-40798072 Msa0730890:CDS 40.0%
GTTTGTCTTAAGAGAGCCAT+TGG + chr5_1:40798408-40798427 None:intergenic 40.0%
TCTGTTGCATACACCATGAA+CGG - chr5_1:40798456-40798475 Msa0730890:CDS 40.0%
GAACATCTATAGAGATCTCC+TGG + chr5_1:40798486-40798505 None:intergenic 40.0%
GAATGATTTCAAACCTTGGC+TGG + chr5_1:40798508-40798527 None:intergenic 40.0%
TAGCAACAACAGTCATTCTG+TGG + chr5_1:40798855-40798874 None:intergenic 40.0%
CAGAATGACTGTTGTTGCTA+CGG - chr5_1:40798855-40798874 Msa0730890:intron 40.0%
TATCATGAGGACTCTAGTGT+TGG + chr5_1:40798902-40798921 None:intergenic 40.0%
AACACTAGAGTCCTCATGAT+AGG - chr5_1:40798901-40798920 Msa0730890:intron 40.0%
! AGGACATTGATTGTTTGACC+TGG + chr5_1:40798928-40798947 None:intergenic 40.0%
GTTGTCAAATGCAGCATTCA+TGG + chr5_1:40799010-40799029 None:intergenic 40.0%
AATGGTAAAGCCGGCAAAAT+AGG + chr5_1:40799081-40799100 None:intergenic 40.0%
GCATTCACATCAAGGATTAG+AGG - chr5_1:40799126-40799145 Msa0730890:intron 40.0%
GCACAAATCCTAATAGTCCA+AGG - chr5_1:40799223-40799242 Msa0730890:intron 40.0%
GCTGCAAATCTTGTTCCATT+TGG + chr5_1:40799258-40799277 None:intergenic 40.0%
TTGAACTGTATAGGAGGAAC+AGG + chr5_1:40799378-40799397 None:intergenic 40.0%
TACACAGGAAATGTTCCTAG+GGG - chr5_1:40799399-40799418 Msa0730890:intron 40.0%
ATCACCCTATGCATGTTCAT+GGG - chr5_1:40799520-40799539 Msa0730890:intron 40.0%
GTTCCAATAGTATTCCTCAC+AGG + chr5_1:40799627-40799646 None:intergenic 40.0%
AATACTATTGGAACACCTCC+TGG - chr5_1:40799633-40799652 Msa0730890:CDS 40.0%
ATTATCGGCCTTGAAACGAA+TGG + chr5_1:40799670-40799689 None:intergenic 40.0%
CACATATGTCAGTGTCGTAT+CGG + chr5_1:40799753-40799772 None:intergenic 40.0%
TTCACATCTCAATTGGGGTT+TGG - chr5_1:40800021-40800040 Msa0730890:CDS 40.0%
! GAGGTATCACTGACTGTAAT+GGG + chr5_1:40800078-40800097 None:intergenic 40.0%
CAAGGTCCATAATTGTACCA+AGG - chr5_1:40800218-40800237 Msa0730890:CDS 40.0%
CAAGTAATCCCAATTGACCT+TGG + chr5_1:40800238-40800257 None:intergenic 40.0%
! TGTTTCATTTGCTGCAGCAG+AGG - chr5_1:40797272-40797291 Msa0730890:three_prime_UTR 45.0%
CGAAGGATACTCACCGTAAA+TGG - chr5_1:40797439-40797458 Msa0730890:CDS 45.0%
ACCGTAAATGGACAGTTTCC+TGG - chr5_1:40797451-40797470 Msa0730890:CDS 45.0%
GCCAGGAAACTGTCCATTTA+CGG + chr5_1:40797455-40797474 None:intergenic 45.0%
CAGTGGATGGAGATGTTGTA+AGG + chr5_1:40797535-40797554 None:intergenic 45.0%
CTTACAACATCTCCATCCAC+TGG - chr5_1:40797533-40797552 Msa0730890:intron 45.0%
CGATGATAGTTACCAGTGGA+TGG + chr5_1:40797548-40797567 None:intergenic 45.0%
GTGACGATGATAGTTACCAG+TGG + chr5_1:40797552-40797571 None:intergenic 45.0%
ATCGTCACTCGTCCTCATTA+TGG - chr5_1:40797564-40797583 Msa0730890:intron 45.0%
TGTCTTTGTGCAACAGGCAT+GGG - chr5_1:40797665-40797684 Msa0730890:intron 45.0%
TTGAGAAATCCATGGGCAGA+TGG - chr5_1:40797697-40797716 Msa0730890:intron 45.0%
ACACAATGTCCAATCCAACC+AGG - chr5_1:40797733-40797752 Msa0730890:intron 45.0%
TAACTTCCACCTGGTTGGAT+TGG + chr5_1:40797745-40797764 None:intergenic 45.0%
ATGTGTAACTTCCACCTGGT+TGG + chr5_1:40797750-40797769 None:intergenic 45.0%
ACCAAGAAGGAACACTATGG+TGG - chr5_1:40797788-40797807 Msa0730890:intron 45.0%
TTCCTAAGAGCCACTGTCTA+TGG - chr5_1:40797826-40797845 Msa0730890:CDS 45.0%
CTCTATAGATGTTCCAGCCA+AGG - chr5_1:40798492-40798511 Msa0730890:CDS 45.0%
! ATGAGGACTCTAGTGTTGGA+AGG + chr5_1:40798898-40798917 None:intergenic 45.0%
TTTGACCTGGTCCTATCATG+AGG + chr5_1:40798915-40798934 None:intergenic 45.0%
GTCAAATGCAGCATTCATGG+CGG + chr5_1:40799007-40799026 None:intergenic 45.0%
! GTCTCGAAGGTGGTCTATTT+TGG + chr5_1:40799059-40799078 None:intergenic 45.0%
! ACCTTCGAGACCTATTTTGC+CGG - chr5_1:40799068-40799087 Msa0730890:CDS 45.0%
! GTGGCCGTGTCGTTAAAAAA+TGG + chr5_1:40799099-40799118 None:intergenic 45.0%
TGATGTGAATGCAGTTGCAG+TGG + chr5_1:40799118-40799137 None:intergenic 45.0%
CTGCAACTGCATTCACATCA+AGG - chr5_1:40799118-40799137 Msa0730890:intron 45.0%
CCTTGACACCTTGGACTATT+AGG + chr5_1:40799234-40799253 None:intergenic 45.0%
! CCTAATAGTCCAAGGTGTCA+AGG - chr5_1:40799231-40799250 Msa0730890:intron 45.0%
GCTTACTACAATGGTGTTCC+TGG - chr5_1:40799330-40799349 Msa0730890:intron 45.0%
AGGAACAGGAGGAAAATCTG+TGG + chr5_1:40799364-40799383 None:intergenic 45.0%
AACTGTATAGGAGGAACAGG+AGG + chr5_1:40799375-40799394 None:intergenic 45.0%
GAAATGTTCCTAGGGGTTTG+TGG - chr5_1:40799406-40799425 Msa0730890:intron 45.0%
GGTTTGTGGACACCTAGAAA+AGG - chr5_1:40799420-40799439 Msa0730890:intron 45.0%
GATCACCCTATGCATGTTCA+TGG - chr5_1:40799519-40799538 Msa0730890:intron 45.0%
GGAACCCATGAACATGCATA+GGG + chr5_1:40799527-40799546 None:intergenic 45.0%
TGGAACCCATGAACATGCAT+AGG + chr5_1:40799528-40799547 None:intergenic 45.0%
AACGTAGCAGGATCAGTTCT+TGG + chr5_1:40799588-40799607 None:intergenic 45.0%
CCAATAGTATTCCTCACAGG+TGG + chr5_1:40799624-40799643 None:intergenic 45.0%
CCACCTGTGAGGAATACTAT+TGG - chr5_1:40799621-40799640 Msa0730890:CDS 45.0%
GGTTCTATAGCTAGAGCACA+TGG + chr5_1:40799732-40799751 None:intergenic 45.0%
!! GGAGGTATCACTGACTGTAA+TGG + chr5_1:40800079-40800098 None:intergenic 45.0%
! TAGCATTGAGGTAGATCTGG+TGG + chr5_1:40800103-40800122 None:intergenic 45.0%
AGAGGCTGTGCAAAACACGA+AGG - chr5_1:40797422-40797441 Msa0730890:CDS 50.0%
! AGCGAGGGACGGAGATTTTA+TGG - chr5_1:40797486-40797505 Msa0730890:CDS 50.0%
GTGTCTTTGTGCAACAGGCA+TGG - chr5_1:40797664-40797683 Msa0730890:intron 50.0%
TAACTAGGTCCATCTGCCCA+TGG + chr5_1:40797709-40797728 None:intergenic 50.0%
CAATGTCCAATCCAACCAGG+TGG - chr5_1:40797736-40797755 Msa0730890:intron 50.0%
CGGTATGTGTAACTTCCACC+TGG + chr5_1:40797754-40797773 None:intergenic 50.0%
GCCACCATAGTGTTCCTTCT+TGG + chr5_1:40797792-40797811 None:intergenic 50.0%
CTCCATAGACAGTGGCTCTT+AGG + chr5_1:40797831-40797850 None:intergenic 50.0%
CATGGATGTGGCTAACTGTG+TGG + chr5_1:40798032-40798051 None:intergenic 50.0%
CACACAGTTAGCCACATCCA+TGG - chr5_1:40798030-40798049 Msa0730890:CDS 50.0%
TAGCCACATCCATGGTCGAT+TGG - chr5_1:40798038-40798057 Msa0730890:CDS 50.0%
GATCCAATCGACCATGGATG+TGG + chr5_1:40798044-40798063 None:intergenic 50.0%
GGACGGTCCGAATTTCGATT+TGG - chr5_1:40798070-40798089 Msa0730890:CDS 50.0%
CACGCAGTGAGCCAAATCAA+TGG + chr5_1:40798166-40798185 None:intergenic 50.0%
TACACCATGAACGGTCAACC+AGG - chr5_1:40798465-40798484 Msa0730890:CDS 50.0%
ATCTCCTGGTTGACCGTTCA+TGG + chr5_1:40798472-40798491 None:intergenic 50.0%
AGAGTCCTCATGATAGGACC+AGG - chr5_1:40798907-40798926 Msa0730890:intron 50.0%
ATGCAGCATTCATGGCGGTT+TGG + chr5_1:40799002-40799021 None:intergenic 50.0%
GGCAAAATAGGTCTCGAAGG+TGG + chr5_1:40799069-40799088 None:intergenic 50.0%
CCATTTGGTCCTTGACACCT+TGG + chr5_1:40799243-40799262 None:intergenic 50.0%
! CCAAGGTGTCAAGGACCAAA+TGG - chr5_1:40799240-40799259 Msa0730890:intron 50.0%
TCGACAAGGTTGAACGTAGC+AGG + chr5_1:40799600-40799619 None:intergenic 50.0%
ACTATTGGAACACCTCCTGG+TGG - chr5_1:40799636-40799655 Msa0730890:CDS 50.0%
ATGGGTCGCCATTCGTTTCA+AGG - chr5_1:40799659-40799678 Msa0730890:CDS 50.0%
CGTTTCAAGGCCGATAATCC+AGG - chr5_1:40799672-40799691 Msa0730890:CDS 50.0%
! GGGTTTGGCAACAGCACTTT+TGG - chr5_1:40800036-40800055 Msa0730890:CDS 50.0%
CATTGAGGTAGATCTGGTGG+TGG + chr5_1:40800100-40800119 None:intergenic 50.0%
TGTGCAACAGGCATGGGCTT+AGG - chr5_1:40797671-40797690 Msa0730890:intron 55.0%
CTATGGTGGCATGCTCACAC+TGG - chr5_1:40797802-40797821 Msa0730890:intron 55.0%
GTGGTTGATCGGCTGTGACA+AGG + chr5_1:40798948-40798967 None:intergenic 55.0%
! GTATCGGCCAGGTGGTTGAT+CGG + chr5_1:40798959-40798978 None:intergenic 55.0%
ACCACCTGGCCGATACTACA+TGG - chr5_1:40798963-40798982 Msa0730890:intron 55.0%
CGCGTGCTGCCATGTAGTAT+CGG + chr5_1:40798975-40798994 None:intergenic 55.0%
GCCGGCAAAATAGGTCTCGA+AGG + chr5_1:40799072-40799091 None:intergenic 55.0%
CTAGGTGTCCACAAACCCCT+AGG + chr5_1:40799417-40799436 None:intergenic 55.0%
ACCTTGTCGATCCACCTGTG+AGG - chr5_1:40799610-40799629 Msa0730890:CDS 55.0%
TCCTCACAGGTGGATCGACA+AGG + chr5_1:40799614-40799633 None:intergenic 55.0%
TTGGAACACCTCCTGGTGGA+TGG - chr5_1:40799640-40799659 Msa0730890:CDS 55.0%
! TGGAACACCTCCTGGTGGAT+GGG - chr5_1:40799641-40799660 Msa0730890:CDS 55.0%
!! TGAGGTAGATCTGGTGGTGG+AGG + chr5_1:40800097-40800116 None:intergenic 55.0%
TGGCCCAACGATCGAAGCGA+GGG - chr5_1:40797471-40797490 Msa0730890:CDS 60.0%
CGTCCCTCGCTTCGATCGTT+GGG + chr5_1:40797477-40797496 None:intergenic 60.0%
CCAACGATCGAAGCGAGGGA+CGG - chr5_1:40797475-40797494 Msa0730890:CDS 60.0%
GTCACAGCCGATCAACCACC+TGG - chr5_1:40798949-40798968 Msa0730890:intron 60.0%
!! GCCATGTAGTATCGGCCAGG+TGG + chr5_1:40798967-40798986 None:intergenic 60.0%
!! GCTGCCATGTAGTATCGGCC+AGG + chr5_1:40798970-40798989 None:intergenic 60.0%
CTCGCTTCGATCGTTGGGCC+AGG + chr5_1:40797472-40797491 None:intergenic 65.0%
CTGGCCCAACGATCGAAGCG+AGG - chr5_1:40797470-40797489 Msa0730890:CDS 65.0%
CCGTCCCTCGCTTCGATCGT+TGG + chr5_1:40797478-40797497 None:intergenic 65.0%
ATGGCGACCCATCCACCAGG+AGG + chr5_1:40799651-40799670 None:intergenic 65.0%
CGAATGGCGACCCATCCACC+AGG + chr5_1:40799654-40799673 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 40797228 40800280 40797228 ID=Msa0730890;Name=Msa0730890
chr5_1 mRNA 40797228 40800280 40797228 ID=Msa0730890-mRNA-1;Parent=Msa0730890;Name=Msa0730890-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.4|0.16|1|1|1|6|157|559
chr5_1 exon 40797228 40797515 40797228 ID=Msa0730890-mRNA-1:exon:11923;Parent=Msa0730890-mRNA-1
chr5_1 exon 40797815 40798750 40797815 ID=Msa0730890-mRNA-1:exon:11922;Parent=Msa0730890-mRNA-1
chr5_1 exon 40798995 40799123 40798995 ID=Msa0730890-mRNA-1:exon:11921;Parent=Msa0730890-mRNA-1
chr5_1 exon 40799583 40799827 40799583 ID=Msa0730890-mRNA-1:exon:11920;Parent=Msa0730890-mRNA-1
chr5_1 exon 40799954 40800105 40799954 ID=Msa0730890-mRNA-1:exon:11919;Parent=Msa0730890-mRNA-1
chr5_1 exon 40800194 40800280 40800194 ID=Msa0730890-mRNA-1:exon:11918;Parent=Msa0730890-mRNA-1
chr5_1 CDS 40800194 40800280 40800194 ID=Msa0730890-mRNA-1:cds;Parent=Msa0730890-mRNA-1
chr5_1 CDS 40799954 40800105 40799954 ID=Msa0730890-mRNA-1:cds;Parent=Msa0730890-mRNA-1
chr5_1 CDS 40799583 40799827 40799583 ID=Msa0730890-mRNA-1:cds;Parent=Msa0730890-mRNA-1
chr5_1 CDS 40798995 40799123 40798995 ID=Msa0730890-mRNA-1:cds;Parent=Msa0730890-mRNA-1
chr5_1 CDS 40797815 40798750 40797815 ID=Msa0730890-mRNA-1:cds;Parent=Msa0730890-mRNA-1
chr5_1 CDS 40797385 40797515 40797385 ID=Msa0730890-mRNA-1:cds;Parent=Msa0730890-mRNA-1
chr5_1 three_prime_UTR 40797228 40797384 40797228 ID=Msa0730890-mRNA-1:three_prime_utr;Parent=Msa0730890-mRNA-1
Gene Sequence

>Msa0730890

ATGAAGACTATTTTATGCTACTTACTTGGCTTACTTACTATCATTGTTTCATTTGCTGCAGCAGAGGAGCATTACCATCAGTTTGTTATTCAAACTGCAACAGTGAAGAGGCTGTGCAAAACACGAAGGATACTCACCGTAAATGGACAGTTTCCTGGCCCAACGATCGAAGCGAGGGACGGAGATTTTATGGTGATCCAAGTAACAAATGCTGGACCTTACAACATCTCCATCCACTGGCATGGGCTTAGGATGTTGAGAAATCCATGGGCAGATGGACCTAGTTATGTGACACAATGTCCAATCCAACCAGGTGGAAGTTACACATACCGATTTACAATTCAAAACCAAGAAGGAACACTATGGTGGCATGCTCACACTGGTTTCCTAAGAGCCACTGTCTATGGAGCTTTCATTATTTATCCAAAAATGGGTTCTGCTTATCCTTTCTCTAAGCCAACTAGAGAATTTCCCGTTCTTCTTGGGGAATGGTTTGATAGAGATCCAATGGCTCTCTTAAGACAAACACAGTTCACAGGAGCACCTCCAAATGTATCTGTTGCATACACCATGAACGGTCAACCAGGAGATCTCTATAGATGTTCCAGCCAAGGAACCGTACGTTTTCAAGTATATGTCGGAGAAACAATTCTCTTAAGAATCATCAACAGTGCACTCAATCAAGAACTCTTCTTTTCAATTGCTAACCACAGAATGACTGTTGTTGCTACGGATGCTGCTTACACAAAACCTTCCAACACTAGAGTCCTCATGATAGGACCAGGTCAAACAATCAATGTCCTTGTCACAGCCGATCAACCACCTGGCCGATACTACATGGCAGCACGCGCTTACCAAACCGCCATGAATGCTGCATTTGACAACACGACGACAACTGCAATTCTTGAATACCAAAATAGACCACCTTCGAGACCTATTTTGCCGGCTTTACCATTTTTTAACGACACGGCCACTGCAACTGCATTCACATCAAGGATTAGAGGACTTTCCAAAATTAAAGTGTTTCGAAATGTTGATGTGAGTTTATTGTTCACTGTAGGGTTAGGATTAATAAACTGCACAAATCCTAATAGTCCAAGGTGTCAAGGACCAAATGGAACAAGATTTGCAGCTAGTATAAACAACAACTCTTTTGTTCTTCCTAGAACAACTTCCTTAATGCAAGCTTACTACAATGGTGTTCCTGGTGTTTTTACCACAGATTTTCCTCCTGTTCCTCCTATACAGTTCAATTACACAGGAAATGTTCCTAGGGGTTTGTGGACACCTAGAAAAGGAACCAAGTTGTTCAAGTTGAAATATGGTTCCAATGTTCAAATTGTTTTGCAGGATACTAGTATAGTAACAATTGAGGATCACCCTATGCATGTTCATGGGTTCCATTTTTTTATAGTTGGTTCAGGTTTTGGAAATTTTAATCCAAGAACTGATCCTGCTACGTTCAACCTTGTCGATCCACCTGTGAGGAATACTATTGGAACACCTCCTGGTGGATGGGTCGCCATTCGTTTCAAGGCCGATAATCCAGGAATTTGGTTCTTGCATTGTCACATAGATTCACATCTCAATTGGGGTTTGGCAACAGCACTTTTGGTAGAAAATGGAGTTGGCCCATTACAGTCAGTGATACCTCCACCACCAGATCTACCTCAATGCTAA

Protein sequence

>Msa0730890

MKTILCYLLGLLTIIVSFAAAEEHYHQFVIQTATVKRLCKTRRILTVNGQFPGPTIEARDGDFMVIQVTNAGPYNISIHWHGLRMLRNPWADGPSYVTQCPIQPGGSYTYRFTIQNQEGTLWWHAHTGFLRATVYGAFIIYPKMGSAYPFSKPTREFPVLLGEWFDRDPMALLRQTQFTGAPPNVSVAYTMNGQPGDLYRCSSQGTVRFQVYVGETILLRIINSALNQELFFSIANHRMTVVATDAAYTKPSNTRVLMIGPGQTINVLVTADQPPGRYYMAARAYQTAMNAAFDNTTTTAILEYQNRPPSRPILPALPFFNDTATATAFTSRIRGLSKIKVFRNVDVSLLFTVGLGLINCTNPNSPRCQGPNGTRFAASINNNSFVLPRTTSLMQAYYNGVPGVFTTDFPPVPPIQFNYTGNVPRGLWTPRKGTKLFKLKYGSNVQIVLQDTSIVTIEDHPMHVHGFHFFIVGSGFGNFNPRTDPATFNLVDPPVRNTIGTPPGGWVAIRFKADNPGIWFLHCHIDSHLNWGLATALLVENGVGPLQSVIPPPPDLPQC*