AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0325260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0325260 MtrunA17_Chr2g0303151 95.522 201 9 0 1 201 1 201 3.37e-133 371
Msa0325260 MtrunA17_Chr8g0381001 74.227 194 49 1 1 194 1 193 1.05e-95 276
Msa0325260 MtrunA17_Chr4g0066721 36.301 146 87 3 29 171 35 177 3.71e-22 89.4
Msa0325260 MtrunA17_Chr7g0268681 33.333 174 109 4 17 189 18 185 1.72e-21 87.4
Msa0325260 MtrunA17_Chr4g0021111 32.927 164 94 2 29 192 10 157 5.06e-21 85.5
Msa0325260 MtrunA17_Chr2g0286341 28.659 164 106 3 31 189 27 184 8.75e-16 72.0
Msa0325260 MtrunA17_Chr7g0217691 27.419 186 122 3 6 188 10 185 1.08e-13 66.6
Msa0325260 MtrunA17_Chr4g0042551 26.452 155 107 1 31 185 63 210 1.38e-11 61.2
Msa0325260 MtrunA17_Chr5g0417761 29.677 155 102 1 31 185 32 179 2.09e-11 60.5
Msa0325260 MtrunA17_Chr2g0321671 29.268 123 71 2 71 185 99 213 6.16e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0325260 AT5G44550.1 58.140 172 72 0 23 194 14 185 4.60e-66 202
Msa0325260 AT4G20390.1 55.294 170 75 1 22 190 12 181 3.81e-53 169
Msa0325260 AT4G15620.1 29.570 186 124 4 5 189 10 189 3.12e-18 79.0
Msa0325260 AT4G15630.1 28.022 182 125 3 9 189 13 189 1.87e-17 77.0
Msa0325260 AT4G15610.1 31.250 144 92 3 31 172 33 171 7.46e-17 75.5
Msa0325260 AT1G03700.1 27.439 164 103 3 29 192 11 158 1.16e-16 74.3
Msa0325260 AT1G14160.1 28.302 159 99 2 31 185 55 202 2.58e-15 71.6
Msa0325260 AT5G15290.1 31.469 143 89 3 31 172 32 166 4.62e-15 70.5
Msa0325260 AT3G06390.1 30.597 134 83 4 32 161 42 169 4.19e-14 68.2
Msa0325260 AT4G03540.1 28.244 131 78 3 44 174 26 140 9.63e-13 63.9

Find 42 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTGGAGTTTGATTAAATT+TGG 0.215698 2_4:+32084238 None:intergenic
GCCCTTATTGCTTCTTTCAT+TGG 0.228754 2_4:-32083428 Msa0325260:CDS
GCAGAAATAGTAGCAGTTAT+TGG 0.231666 2_4:+32084260 None:intergenic
CAGAAATAGTAGCAGTTATT+GGG 0.254239 2_4:+32084261 None:intergenic
AAGTCCTTTGTAATCATATT+GGG 0.274380 2_4:+32083726 None:intergenic
ATGATTGCATTGGATATATT+AGG 0.293339 2_4:-32083751 Msa0325260:CDS
TACAAAATGGCTTCAAGAAA+TGG 0.318606 2_4:-32084455 None:intergenic
GAAGTCCTTTGTAATCATAT+TGG 0.328703 2_4:+32083725 None:intergenic
AGCCAATGAAAGAAGCAATA+AGG 0.340360 2_4:+32083426 None:intergenic
GGTGCCAATAACAAAACTTT+TGG 0.354514 2_4:+32084295 None:intergenic
TTTGAAAGCTATTGCAATAG+AGG 0.418883 2_4:-32083458 Msa0325260:CDS
ATGTCAGCATTGGGAAGAAA+TGG 0.423404 2_4:-32083518 Msa0325260:CDS
GCCAATGAAAGAAGCAATAA+GGG 0.431019 2_4:+32083427 None:intergenic
TTGAAAACTTACACAAAAGC+TGG 0.437745 2_4:+32084221 None:intergenic
ATGCAATCATCACCAAGTTA+TGG 0.467360 2_4:+32083764 None:intergenic
GGAGCATGGTTAATGCGATT+AGG 0.484616 2_4:+32083353 None:intergenic
AGCAACATTCATGTCAGCAT+TGG 0.488005 2_4:-32083528 Msa0325260:CDS
ACTATGGCTCTGGCATCAGC+TGG 0.494373 2_4:-32083560 Msa0325260:CDS
GCGATTAGGCTTGAGAAGCT+TGG 0.494528 2_4:+32083367 None:intergenic
GCAACATTCATGTCAGCATT+GGG 0.495269 2_4:-32083527 Msa0325260:CDS
AAATGCTAGTCTCCATAACT+TGG 0.496794 2_4:-32083776 Msa0325260:CDS
GGTGAAGTTAACTATGGCTC+TGG 0.500555 2_4:-32083570 Msa0325260:intron
TGCAGCTGCAACACTTGTAA+TGG 0.510923 2_4:-32084333 Msa0325260:CDS
ATGTTAATCATATCAAGGAC+TGG 0.510976 2_4:+32083331 None:intergenic
TGGTAATTCACATGCAAGAT+GGG 0.512674 2_4:-32083498 Msa0325260:CDS
ATGGTAATTCACATGCAAGA+TGG 0.522902 2_4:-32083499 Msa0325260:CDS
ATGGAGACTAGCATTTCCAT+TGG 0.523367 2_4:+32083783 None:intergenic
AGGTTCTTTGTGATAGCCAA+TGG 0.529472 2_4:-32083799 Msa0325260:CDS
GCTCTGGCATCAGCTGGAGA+TGG 0.540036 2_4:-32083554 Msa0325260:CDS
TAACTTGGTGATGATTGCAT+TGG 0.550469 2_4:-32083761 Msa0325260:CDS
CATATCAAGGACTGGGAGCA+TGG 0.559515 2_4:+32083339 None:intergenic
TGTTAATCATATCAAGGACT+GGG 0.560345 2_4:+32083332 None:intergenic
AGGCTTGAGAAGCTTGGCAA+TGG 0.561801 2_4:+32083373 None:intergenic
TACAAGTGTTGCAGCTGCAG+TGG 0.571483 2_4:+32084337 None:intergenic
CTAAAATTGCAATAAATGCA+AGG 0.578209 2_4:+32083701 None:intergenic
AGCTATTGCAATAGAGGTGG+TGG 0.598102 2_4:-32083452 Msa0325260:CDS
GAAAGCTATTGCAATAGAGG+TGG 0.619990 2_4:-32083455 Msa0325260:CDS
AGTCCTTTGTAATCATATTG+GGG 0.628572 2_4:+32083727 None:intergenic
AGAAATAGTAGCAGTTATTG+GGG 0.633112 2_4:+32084262 None:intergenic
GGACCCCAATATGATTACAA+AGG 0.645480 2_4:-32083730 Msa0325260:CDS
AGTTATTGGGGTGTTACCAG+CGG 0.669954 2_4:+32084274 None:intergenic
GGTGAAGAGAAAGTTGAACG+TGG 0.756724 2_4:-32084434 Msa0325260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATAGGTAAATATTAG+TGG + chr2_4:32083800-32083819 None:intergenic 15.0%
!!! GAGTTTTTTAATTTTTTCTT+AGG - chr2_4:32084153-32084172 Msa0325260:intron 15.0%
!!! TTTTTATAGGTAAATATTAG+TGG + chr2_4:32083800-32083819 None:intergenic 15.0%
!!! GAGTTTTTTAATTTTTTCTT+AGG - chr2_4:32084153-32084172 Msa0325260:intron 15.0%
!! AAAGAAAAACAAAGAATGAT+TGG - chr2_4:32083398-32083417 Msa0325260:CDS 20.0%
!!! AATATTAGTGGTTAATTTGT+CGG + chr2_4:32083788-32083807 None:intergenic 20.0%
!! TTACCTATAAAAAATGTAAG+AGG - chr2_4:32083807-32083826 Msa0325260:intron 20.0%
!!! TTTCCTCTTACATTTTTTAT+AGG + chr2_4:32083813-32083832 None:intergenic 20.0%
!!! ATTTATTGCAATTTTAGACA+TGG - chr2_4:32084097-32084116 Msa0325260:intron 20.0%
!! AAAGAAAAACAAAGAATGAT+TGG - chr2_4:32083398-32083417 Msa0325260:CDS 20.0%
!!! AATATTAGTGGTTAATTTGT+CGG + chr2_4:32083788-32083807 None:intergenic 20.0%
!! TTACCTATAAAAAATGTAAG+AGG - chr2_4:32083807-32083826 Msa0325260:intron 20.0%
!!! TTTCCTCTTACATTTTTTAT+AGG + chr2_4:32083813-32083832 None:intergenic 20.0%
!!! ATTTATTGCAATTTTAGACA+TGG - chr2_4:32084097-32084116 Msa0325260:intron 20.0%
!! ATTGGATTCTTTTATCTCTT+AGG - chr2_4:32083416-32083435 Msa0325260:CDS 25.0%
!! TTGGATTCTTTTATCTCTTA+GGG - chr2_4:32083417-32083436 Msa0325260:CDS 25.0%
! AACGAACATAAATAGAAAAG+AGG + chr2_4:32083633-32083652 None:intergenic 25.0%
!!! GACACAAAAAAGTTTTATGT+AGG - chr2_4:32083720-32083739 Msa0325260:CDS 25.0%
!!! ACAAAAAAGTTTTATGTAGG+AGG - chr2_4:32083723-32083742 Msa0325260:CDS 25.0%
!!! ATATTAGTGGTTAATTTGTC+GGG + chr2_4:32083787-32083806 None:intergenic 25.0%
! AATTTCATCGCTTAATTCAA+AGG - chr2_4:32083865-32083884 Msa0325260:intron 25.0%
! TTTACATTAACACATCATTG+TGG - chr2_4:32083962-32083981 Msa0325260:intron 25.0%
! TTACATTAACACATCATTGT+GGG - chr2_4:32083963-32083982 Msa0325260:intron 25.0%
! ATGATTGCATTGGATATATT+AGG - chr2_4:32084041-32084060 Msa0325260:intron 25.0%
! AAGTCCTTTGTAATCATATT+GGG + chr2_4:32084069-32084088 None:intergenic 25.0%
! CTAAAATTGCAATAAATGCA+AGG + chr2_4:32084094-32084113 None:intergenic 25.0%
!! ATTGGATTCTTTTATCTCTT+AGG - chr2_4:32083416-32083435 Msa0325260:CDS 25.0%
!! TTGGATTCTTTTATCTCTTA+GGG - chr2_4:32083417-32083436 Msa0325260:CDS 25.0%
! AACGAACATAAATAGAAAAG+AGG + chr2_4:32083633-32083652 None:intergenic 25.0%
!!! GACACAAAAAAGTTTTATGT+AGG - chr2_4:32083720-32083739 Msa0325260:CDS 25.0%
!!! ACAAAAAAGTTTTATGTAGG+AGG - chr2_4:32083723-32083742 Msa0325260:CDS 25.0%
!!! ATATTAGTGGTTAATTTGTC+GGG + chr2_4:32083787-32083806 None:intergenic 25.0%
! AATTTCATCGCTTAATTCAA+AGG - chr2_4:32083865-32083884 Msa0325260:intron 25.0%
! TTTACATTAACACATCATTG+TGG - chr2_4:32083962-32083981 Msa0325260:intron 25.0%
! TTACATTAACACATCATTGT+GGG - chr2_4:32083963-32083982 Msa0325260:intron 25.0%
! ATGATTGCATTGGATATATT+AGG - chr2_4:32084041-32084060 Msa0325260:intron 25.0%
! AAGTCCTTTGTAATCATATT+GGG + chr2_4:32084069-32084088 None:intergenic 25.0%
! CTAAAATTGCAATAAATGCA+AGG + chr2_4:32084094-32084113 None:intergenic 25.0%
!!! CAGACCAAAAGTTTTGTTAT+TGG - chr2_4:32083493-32083512 Msa0325260:CDS 30.0%
AGAAATAGTAGCAGTTATTG+GGG + chr2_4:32083533-32083552 None:intergenic 30.0%
CAGAAATAGTAGCAGTTATT+GGG + chr2_4:32083534-32083553 None:intergenic 30.0%
AGCTGGAGTTTGATTAAATT+TGG + chr2_4:32083557-32083576 None:intergenic 30.0%
TTGAAAACTTACACAAAAGC+TGG + chr2_4:32083574-32083593 None:intergenic 30.0%
!! TATTAGTGGTTAATTTGTCG+GGG + chr2_4:32083786-32083805 None:intergenic 30.0%
TGTAAGAGGAAAATAGAGAA+AGG - chr2_4:32083821-32083840 Msa0325260:intron 30.0%
TACATTAACACATCATTGTG+GGG - chr2_4:32083964-32083983 Msa0325260:intron 30.0%
AGTCCTTTGTAATCATATTG+GGG + chr2_4:32084068-32084087 None:intergenic 30.0%
GAAGTCCTTTGTAATCATAT+TGG + chr2_4:32084070-32084089 None:intergenic 30.0%
!!! TTTTTGGGTGAAGTTAACTA+TGG - chr2_4:32084216-32084235 Msa0325260:intron 30.0%
TTTGAAAGCTATTGCAATAG+AGG - chr2_4:32084334-32084353 Msa0325260:CDS 30.0%
!!! CAGACCAAAAGTTTTGTTAT+TGG - chr2_4:32083493-32083512 Msa0325260:CDS 30.0%
AGAAATAGTAGCAGTTATTG+GGG + chr2_4:32083533-32083552 None:intergenic 30.0%
CAGAAATAGTAGCAGTTATT+GGG + chr2_4:32083534-32083553 None:intergenic 30.0%
AGCTGGAGTTTGATTAAATT+TGG + chr2_4:32083557-32083576 None:intergenic 30.0%
TTGAAAACTTACACAAAAGC+TGG + chr2_4:32083574-32083593 None:intergenic 30.0%
!! TATTAGTGGTTAATTTGTCG+GGG + chr2_4:32083786-32083805 None:intergenic 30.0%
TGTAAGAGGAAAATAGAGAA+AGG - chr2_4:32083821-32083840 Msa0325260:intron 30.0%
TACATTAACACATCATTGTG+GGG - chr2_4:32083964-32083983 Msa0325260:intron 30.0%
AGTCCTTTGTAATCATATTG+GGG + chr2_4:32084068-32084087 None:intergenic 30.0%
GAAGTCCTTTGTAATCATAT+TGG + chr2_4:32084070-32084089 None:intergenic 30.0%
!!! TTTTTGGGTGAAGTTAACTA+TGG - chr2_4:32084216-32084235 Msa0325260:intron 30.0%
TTTGAAAGCTATTGCAATAG+AGG - chr2_4:32084334-32084353 Msa0325260:CDS 30.0%
! GGTGCCAATAACAAAACTTT+TGG + chr2_4:32083500-32083519 None:intergenic 35.0%
GCAGAAATAGTAGCAGTTAT+TGG + chr2_4:32083535-32083554 None:intergenic 35.0%
TAGTAGAAGAGGTCGAATTT+CGG + chr2_4:32083750-32083769 None:intergenic 35.0%
!! ATTAGTGGTTAATTTGTCGG+GGG + chr2_4:32083785-32083804 None:intergenic 35.0%
! AAATGCTAGTCTCCATAACT+TGG - chr2_4:32084016-32084035 Msa0325260:intron 35.0%
ATGCAATCATCACCAAGTTA+TGG + chr2_4:32084031-32084050 None:intergenic 35.0%
!! TAACTTGGTGATGATTGCAT+TGG - chr2_4:32084031-32084050 Msa0325260:intron 35.0%
ATGGTAATTCACATGCAAGA+TGG - chr2_4:32084293-32084312 Msa0325260:CDS 35.0%
TGGTAATTCACATGCAAGAT+GGG - chr2_4:32084294-32084313 Msa0325260:CDS 35.0%
GCCAATGAAAGAAGCAATAA+GGG + chr2_4:32084368-32084387 None:intergenic 35.0%
AGCCAATGAAAGAAGCAATA+AGG + chr2_4:32084369-32084388 None:intergenic 35.0%
! GGTGCCAATAACAAAACTTT+TGG + chr2_4:32083500-32083519 None:intergenic 35.0%
GCAGAAATAGTAGCAGTTAT+TGG + chr2_4:32083535-32083554 None:intergenic 35.0%
TAGTAGAAGAGGTCGAATTT+CGG + chr2_4:32083750-32083769 None:intergenic 35.0%
!! ATTAGTGGTTAATTTGTCGG+GGG + chr2_4:32083785-32083804 None:intergenic 35.0%
! AAATGCTAGTCTCCATAACT+TGG - chr2_4:32084016-32084035 Msa0325260:intron 35.0%
ATGCAATCATCACCAAGTTA+TGG + chr2_4:32084031-32084050 None:intergenic 35.0%
!! TAACTTGGTGATGATTGCAT+TGG - chr2_4:32084031-32084050 Msa0325260:intron 35.0%
ATGGTAATTCACATGCAAGA+TGG - chr2_4:32084293-32084312 Msa0325260:CDS 35.0%
TGGTAATTCACATGCAAGAT+GGG - chr2_4:32084294-32084313 Msa0325260:CDS 35.0%
GCCAATGAAAGAAGCAATAA+GGG + chr2_4:32084368-32084387 None:intergenic 35.0%
AGCCAATGAAAGAAGCAATA+AGG + chr2_4:32084369-32084388 None:intergenic 35.0%
ATACGATTGGACTACTCGTT+CGG + chr2_4:32083693-32083712 None:intergenic 40.0%
TGTGTCTGAATCGATACGAT+TGG + chr2_4:32083706-32083725 None:intergenic 40.0%
GAGAGAGTTGTTAGTAGAAG+AGG + chr2_4:32083761-32083780 None:intergenic 40.0%
AGGTTCTTTGTGATAGCCAA+TGG - chr2_4:32083993-32084012 Msa0325260:intron 40.0%
ATGGAGACTAGCATTTCCAT+TGG + chr2_4:32084012-32084031 None:intergenic 40.0%
GGACCCCAATATGATTACAA+AGG - chr2_4:32084062-32084081 Msa0325260:intron 40.0%
AGCAACATTCATGTCAGCAT+TGG - chr2_4:32084264-32084283 Msa0325260:CDS 40.0%
GCAACATTCATGTCAGCATT+GGG - chr2_4:32084265-32084284 Msa0325260:CDS 40.0%
! ATGTCAGCATTGGGAAGAAA+TGG - chr2_4:32084274-32084293 Msa0325260:CDS 40.0%
GAAAGCTATTGCAATAGAGG+TGG - chr2_4:32084337-32084356 Msa0325260:CDS 40.0%
GCCCTTATTGCTTCTTTCAT+TGG - chr2_4:32084364-32084383 Msa0325260:CDS 40.0%
ATACGATTGGACTACTCGTT+CGG + chr2_4:32083693-32083712 None:intergenic 40.0%
TGTGTCTGAATCGATACGAT+TGG + chr2_4:32083706-32083725 None:intergenic 40.0%
GAGAGAGTTGTTAGTAGAAG+AGG + chr2_4:32083761-32083780 None:intergenic 40.0%
AGGTTCTTTGTGATAGCCAA+TGG - chr2_4:32083993-32084012 Msa0325260:intron 40.0%
ATGGAGACTAGCATTTCCAT+TGG + chr2_4:32084012-32084031 None:intergenic 40.0%
GGACCCCAATATGATTACAA+AGG - chr2_4:32084062-32084081 Msa0325260:intron 40.0%
AGCAACATTCATGTCAGCAT+TGG - chr2_4:32084264-32084283 Msa0325260:CDS 40.0%
GCAACATTCATGTCAGCATT+GGG - chr2_4:32084265-32084284 Msa0325260:CDS 40.0%
! ATGTCAGCATTGGGAAGAAA+TGG - chr2_4:32084274-32084293 Msa0325260:CDS 40.0%
GAAAGCTATTGCAATAGAGG+TGG - chr2_4:32084337-32084356 Msa0325260:CDS 40.0%
GCCCTTATTGCTTCTTTCAT+TGG - chr2_4:32084364-32084383 Msa0325260:CDS 40.0%
GGTGAAGAGAAAGTTGAACG+TGG - chr2_4:32083358-32083377 Msa0325260:CDS 45.0%
TGCAGCTGCAACACTTGTAA+TGG - chr2_4:32083459-32083478 Msa0325260:CDS 45.0%
!!! AGTTTTGTTATTGGCACCGC+TGG - chr2_4:32083502-32083521 Msa0325260:CDS 45.0%
! AGTTATTGGGGTGTTACCAG+CGG + chr2_4:32083521-32083540 None:intergenic 45.0%
TACGATTGGACTACTCGTTC+GGG + chr2_4:32083692-32083711 None:intergenic 45.0%
ACATCATTGTGGGGTGAAAC+AGG - chr2_4:32083973-32083992 Msa0325260:intron 45.0%
GGTGAAGTTAACTATGGCTC+TGG - chr2_4:32084222-32084241 Msa0325260:intron 45.0%
AGCTATTGCAATAGAGGTGG+TGG - chr2_4:32084340-32084359 Msa0325260:CDS 45.0%
GGAGCATGGTTAATGCGATT+AGG + chr2_4:32084442-32084461 None:intergenic 45.0%
GGTGAAGAGAAAGTTGAACG+TGG - chr2_4:32083358-32083377 Msa0325260:CDS 45.0%
TGCAGCTGCAACACTTGTAA+TGG - chr2_4:32083459-32083478 Msa0325260:CDS 45.0%
!!! AGTTTTGTTATTGGCACCGC+TGG - chr2_4:32083502-32083521 Msa0325260:CDS 45.0%
! AGTTATTGGGGTGTTACCAG+CGG + chr2_4:32083521-32083540 None:intergenic 45.0%
TACGATTGGACTACTCGTTC+GGG + chr2_4:32083692-32083711 None:intergenic 45.0%
ACATCATTGTGGGGTGAAAC+AGG - chr2_4:32083973-32083992 Msa0325260:intron 45.0%
GGTGAAGTTAACTATGGCTC+TGG - chr2_4:32084222-32084241 Msa0325260:intron 45.0%
AGCTATTGCAATAGAGGTGG+TGG - chr2_4:32084340-32084359 Msa0325260:CDS 45.0%
GGAGCATGGTTAATGCGATT+AGG + chr2_4:32084442-32084461 None:intergenic 45.0%
!!! ATTGATAAATAATATTTTTT+TGG - chr2_4:32084200-32084219 Msa0325260:intron 5.0%
!!! TTGATAAATAATATTTTTTT+GGG - chr2_4:32084201-32084220 Msa0325260:intron 5.0%
!!! ATTGATAAATAATATTTTTT+TGG - chr2_4:32084200-32084219 Msa0325260:intron 5.0%
!!! TTGATAAATAATATTTTTTT+GGG - chr2_4:32084201-32084220 Msa0325260:intron 5.0%
! TACAAGTGTTGCAGCTGCAG+TGG + chr2_4:32083458-32083477 None:intergenic 50.0%
ACGATTGGACTACTCGTTCG+GGG + chr2_4:32083691-32083710 None:intergenic 50.0%
AGGCTTGAGAAGCTTGGCAA+TGG + chr2_4:32084422-32084441 None:intergenic 50.0%
GCGATTAGGCTTGAGAAGCT+TGG + chr2_4:32084428-32084447 None:intergenic 50.0%
! TACAAGTGTTGCAGCTGCAG+TGG + chr2_4:32083458-32083477 None:intergenic 50.0%
ACGATTGGACTACTCGTTCG+GGG + chr2_4:32083691-32083710 None:intergenic 50.0%
AGGCTTGAGAAGCTTGGCAA+TGG + chr2_4:32084422-32084441 None:intergenic 50.0%
GCGATTAGGCTTGAGAAGCT+TGG + chr2_4:32084428-32084447 None:intergenic 50.0%
CGATTGGACTACTCGTTCGG+GGG + chr2_4:32083690-32083709 None:intergenic 55.0%
!! ACTATGGCTCTGGCATCAGC+TGG - chr2_4:32084232-32084251 Msa0325260:intron 55.0%
CGATTGGACTACTCGTTCGG+GGG + chr2_4:32083690-32083709 None:intergenic 55.0%
!! ACTATGGCTCTGGCATCAGC+TGG - chr2_4:32084232-32084251 Msa0325260:intron 55.0%
GCTCTGGCATCAGCTGGAGA+TGG - chr2_4:32084238-32084257 Msa0325260:CDS 60.0%
GCTCTGGCATCAGCTGGAGA+TGG - chr2_4:32084238-32084257 Msa0325260:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 32083343 32084471 32083343 ID=Msa0325260;Name=Msa0325260
chr2_4 mRNA 32083343 32084471 32083343 ID=Msa0325260-mRNA-1;Parent=Msa0325260;Name=Msa0325260-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|201
chr2_4 exon 32084233 32084471 32084233 ID=Msa0325260-mRNA-1:exon:10542;Parent=Msa0325260-mRNA-1
chr2_4 exon 32083696 32083819 32083696 ID=Msa0325260-mRNA-1:exon:10541;Parent=Msa0325260-mRNA-1
chr2_4 exon 32083343 32083585 32083343 ID=Msa0325260-mRNA-1:exon:10540;Parent=Msa0325260-mRNA-1
chr2_4 CDS 32084233 32084471 32084233 ID=Msa0325260-mRNA-1:cds;Parent=Msa0325260-mRNA-1
chr2_4 CDS 32083696 32083819 32083696 ID=Msa0325260-mRNA-1:cds;Parent=Msa0325260-mRNA-1
chr2_4 CDS 32083343 32083585 32083343 ID=Msa0325260-mRNA-1:cds;Parent=Msa0325260-mRNA-1
Gene Sequence

>Msa0325260

ATGGCTTCAAGAAATGGTGAAGAGAAAGTTGAACGTGGCTTCAATGATGTTCATGAAAGAAAAACAAAGAATGATTGGATTCTTTTATCTCTTAGGGTTGTTGCATTTTTTGCCACTGCAGCTGCAACACTTGTAATGGCACTCAACAAACAGACCAAAAGTTTTGTTATTGGCACCGCTGGTAACACCCCAATAACTGCTACTATTTCTGCCAAATTTAATCAAACTCCAGCTTTTGTGTTCTTTGTGATAGCCAATGGAAATGCTAGTCTCCATAACTTGGTGATGATTGCATTGGATATATTAGGACCCCAATATGATTACAAAGGACTTCGCCTTGCATTTATTGCAATTTTAGACATGTTAACTATGGCTCTGGCATCAGCTGGAGATGGTGCAGCAACATTCATGTCAGCATTGGGAAGAAATGGTAATTCACATGCAAGATGGGATAAGATTTGTGACAAATTTGAAAGCTATTGCAATAGAGGTGGTGGTGCCCTTATTGCTTCTTTCATTGGCTTCATTCTTCTCTTGATTATCACTGTGATGTCCATTGCCAAGCTTCTCAAGCCTAATCGCATTAACCATGCTCCCAGTCCTTGA

Protein sequence

>Msa0325260

MASRNGEEKVERGFNDVHERKTKNDWILLSLRVVAFFATAAATLVMALNKQTKSFVIGTAGNTPITATISAKFNQTPAFVFFVIANGNASLHNLVMIALDILGPQYDYKGLRLAFIAILDMLTMALASAGDGAATFMSALGRNGNSHARWDKICDKFESYCNRGGGALIASFIGFILLLIITVMSIAKLLKPNRINHAPSP*