AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0247780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0247780 MtrunA17_Chr2g0303151 95.522 201 9 0 1 201 1 201 3.37e-133 371
Msa0247780 MtrunA17_Chr8g0381001 74.227 194 49 1 1 194 1 193 1.05e-95 276
Msa0247780 MtrunA17_Chr4g0066721 36.301 146 87 3 29 171 35 177 3.71e-22 89.4
Msa0247780 MtrunA17_Chr7g0268681 33.333 174 109 4 17 189 18 185 1.72e-21 87.4
Msa0247780 MtrunA17_Chr4g0021111 32.927 164 94 2 29 192 10 157 5.06e-21 85.5
Msa0247780 MtrunA17_Chr2g0286341 28.659 164 106 3 31 189 27 184 8.75e-16 72.0
Msa0247780 MtrunA17_Chr7g0217691 27.419 186 122 3 6 188 10 185 1.08e-13 66.6
Msa0247780 MtrunA17_Chr4g0042551 26.452 155 107 1 31 185 63 210 1.38e-11 61.2
Msa0247780 MtrunA17_Chr5g0417761 29.677 155 102 1 31 185 32 179 2.09e-11 60.5
Msa0247780 MtrunA17_Chr2g0321671 29.268 123 71 2 71 185 99 213 6.16e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0247780 AT5G44550.1 58.140 172 72 0 23 194 14 185 4.60e-66 202
Msa0247780 AT4G20390.1 55.294 170 75 1 22 190 12 181 3.81e-53 169
Msa0247780 AT4G15620.1 29.570 186 124 4 5 189 10 189 3.12e-18 79.0
Msa0247780 AT4G15630.1 28.022 182 125 3 9 189 13 189 1.87e-17 77.0
Msa0247780 AT4G15610.1 31.250 144 92 3 31 172 33 171 7.46e-17 75.5
Msa0247780 AT1G03700.1 27.439 164 103 3 29 192 11 158 1.16e-16 74.3
Msa0247780 AT1G14160.1 28.302 159 99 2 31 185 55 202 2.58e-15 71.6
Msa0247780 AT5G15290.1 31.469 143 89 3 31 172 32 166 4.62e-15 70.5
Msa0247780 AT3G06390.1 30.597 134 83 4 32 161 42 169 4.19e-14 68.2
Msa0247780 AT4G03540.1 28.244 131 78 3 44 174 26 140 9.63e-13 63.9

Find 42 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTGGAGTTTGATTAAATT+TGG 0.215698 2_2:+30504974 None:intergenic
GCCCTTATTGCTTCTTTCAT+TGG 0.228754 2_2:-30504165 Msa0247780:CDS
GCAGAAATAGTAGCAGTTAT+TGG 0.231666 2_2:+30504996 None:intergenic
CAGAAATAGTAGCAGTTATT+GGG 0.254239 2_2:+30504997 None:intergenic
AAGTCCTTTGTAATCATATT+GGG 0.274380 2_2:+30504463 None:intergenic
ATGATTGCATTGGATATATT+AGG 0.293339 2_2:-30504488 Msa0247780:CDS
TACAAAATGGCTTCAAGAAA+TGG 0.318606 2_2:-30505191 None:intergenic
GAAGTCCTTTGTAATCATAT+TGG 0.328703 2_2:+30504462 None:intergenic
AGCCAATGAAAGAAGCAATA+AGG 0.340360 2_2:+30504163 None:intergenic
GGTGCCAATAACAAAACTTT+TGG 0.354514 2_2:+30505031 None:intergenic
TTTGAAAGCTATTGCAATAG+AGG 0.418883 2_2:-30504195 Msa0247780:CDS
ATGTCAGCATTGGGAAGAAA+TGG 0.423404 2_2:-30504255 Msa0247780:CDS
GCCAATGAAAGAAGCAATAA+GGG 0.431019 2_2:+30504164 None:intergenic
TTGAAAACTTACACAAAAGC+TGG 0.437745 2_2:+30504957 None:intergenic
ATGCAATCATCACCAAGTTA+TGG 0.467360 2_2:+30504501 None:intergenic
GGAGCATGGTTAATGCGATT+AGG 0.484616 2_2:+30504090 None:intergenic
AGCAACATTCATGTCAGCAT+TGG 0.488005 2_2:-30504265 Msa0247780:CDS
ACTATGGCTCTGGCATCAGC+TGG 0.494373 2_2:-30504297 Msa0247780:CDS
GCGATTAGGCTTGAGAAGCT+TGG 0.494528 2_2:+30504104 None:intergenic
GCAACATTCATGTCAGCATT+GGG 0.495269 2_2:-30504264 Msa0247780:CDS
AAATGCTAGTCTCCATAACT+TGG 0.496794 2_2:-30504513 Msa0247780:CDS
GGTGAAGTTAACTATGGCTC+TGG 0.500555 2_2:-30504307 Msa0247780:intron
TGCAGCTGCAACACTTGTAA+TGG 0.510923 2_2:-30505069 Msa0247780:CDS
ATGTTAATCATATCAAGGAC+TGG 0.510976 2_2:+30504068 None:intergenic
TGGTAATTCACATGCAAGAT+GGG 0.512674 2_2:-30504235 Msa0247780:CDS
ATGGTAATTCACATGCAAGA+TGG 0.522902 2_2:-30504236 Msa0247780:CDS
ATGGAGACTAGCATTTCCAT+TGG 0.523367 2_2:+30504520 None:intergenic
AGGTTCTTTGTGATAGCCAA+TGG 0.529472 2_2:-30504536 Msa0247780:CDS
GCTCTGGCATCAGCTGGAGA+TGG 0.540036 2_2:-30504291 Msa0247780:CDS
TAACTTGGTGATGATTGCAT+TGG 0.550469 2_2:-30504498 Msa0247780:CDS
CATATCAAGGACTGGGAGCA+TGG 0.559515 2_2:+30504076 None:intergenic
TGTTAATCATATCAAGGACT+GGG 0.560345 2_2:+30504069 None:intergenic
AGGCTTGAGAAGCTTGGCAA+TGG 0.561801 2_2:+30504110 None:intergenic
TACAAGTGTTGCAGCTGCAG+TGG 0.571483 2_2:+30505073 None:intergenic
CTAAAATTGCAATAAATGCA+AGG 0.578209 2_2:+30504438 None:intergenic
AGCTATTGCAATAGAGGTGG+TGG 0.598102 2_2:-30504189 Msa0247780:CDS
GAAAGCTATTGCAATAGAGG+TGG 0.619990 2_2:-30504192 Msa0247780:CDS
AGTCCTTTGTAATCATATTG+GGG 0.628572 2_2:+30504464 None:intergenic
AGAAATAGTAGCAGTTATTG+GGG 0.633112 2_2:+30504998 None:intergenic
GGACCCCAATATGATTACAA+AGG 0.645480 2_2:-30504467 Msa0247780:CDS
AGTTATTGGGGTGTTACCAG+CGG 0.669954 2_2:+30505010 None:intergenic
GGTGAAGAGAAAGTTGAACG+TGG 0.756724 2_2:-30505170 Msa0247780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATAGGTAAATATTAG+TGG + chr2_2:30504537-30504556 None:intergenic 15.0%
!!! GAGTTTTTTAATTTTTTCTT+AGG - chr2_2:30504889-30504908 Msa0247780:intron 15.0%
!!! TTTTTATAGGTAAATATTAG+TGG + chr2_2:30504537-30504556 None:intergenic 15.0%
!!! GAGTTTTTTAATTTTTTCTT+AGG - chr2_2:30504889-30504908 Msa0247780:intron 15.0%
!! AAAGAAAAACAAAGAATGAT+TGG - chr2_2:30504135-30504154 Msa0247780:CDS 20.0%
!!! AATATTAGTGGTTAATTTGT+CGG + chr2_2:30504525-30504544 None:intergenic 20.0%
!! TTACCTATAAAAAATGTAAG+AGG - chr2_2:30504544-30504563 Msa0247780:intron 20.0%
!!! TTTCCTCTTACATTTTTTAT+AGG + chr2_2:30504550-30504569 None:intergenic 20.0%
!!! ATTTATTGCAATTTTAGACA+TGG - chr2_2:30504833-30504852 Msa0247780:intron 20.0%
!! AAAGAAAAACAAAGAATGAT+TGG - chr2_2:30504135-30504154 Msa0247780:CDS 20.0%
!!! AATATTAGTGGTTAATTTGT+CGG + chr2_2:30504525-30504544 None:intergenic 20.0%
!! TTACCTATAAAAAATGTAAG+AGG - chr2_2:30504544-30504563 Msa0247780:intron 20.0%
!!! TTTCCTCTTACATTTTTTAT+AGG + chr2_2:30504550-30504569 None:intergenic 20.0%
!!! ATTTATTGCAATTTTAGACA+TGG - chr2_2:30504833-30504852 Msa0247780:intron 20.0%
!! ATTGGATTCTTTTATCTCTT+AGG - chr2_2:30504153-30504172 Msa0247780:CDS 25.0%
!! TTGGATTCTTTTATCTCTTA+GGG - chr2_2:30504154-30504173 Msa0247780:CDS 25.0%
! AACGAACATAAATAGAAAAG+AGG + chr2_2:30504370-30504389 None:intergenic 25.0%
!!! GACACAAAAAAGTTTTATGT+AGG - chr2_2:30504457-30504476 Msa0247780:CDS 25.0%
!!! ACAAAAAAGTTTTATGTAGG+AGG - chr2_2:30504460-30504479 Msa0247780:CDS 25.0%
!!! ATATTAGTGGTTAATTTGTC+GGG + chr2_2:30504524-30504543 None:intergenic 25.0%
! AATTTCATCGCTTAATTCAA+AGG - chr2_2:30504602-30504621 Msa0247780:intron 25.0%
! TTTACATTAACACATCATTG+TGG - chr2_2:30504698-30504717 Msa0247780:intron 25.0%
! TTACATTAACACATCATTGT+GGG - chr2_2:30504699-30504718 Msa0247780:intron 25.0%
! ATGATTGCATTGGATATATT+AGG - chr2_2:30504777-30504796 Msa0247780:intron 25.0%
! AAGTCCTTTGTAATCATATT+GGG + chr2_2:30504805-30504824 None:intergenic 25.0%
! CTAAAATTGCAATAAATGCA+AGG + chr2_2:30504830-30504849 None:intergenic 25.0%
!! ATTGGATTCTTTTATCTCTT+AGG - chr2_2:30504153-30504172 Msa0247780:CDS 25.0%
!! TTGGATTCTTTTATCTCTTA+GGG - chr2_2:30504154-30504173 Msa0247780:CDS 25.0%
! AACGAACATAAATAGAAAAG+AGG + chr2_2:30504370-30504389 None:intergenic 25.0%
!!! GACACAAAAAAGTTTTATGT+AGG - chr2_2:30504457-30504476 Msa0247780:CDS 25.0%
!!! ACAAAAAAGTTTTATGTAGG+AGG - chr2_2:30504460-30504479 Msa0247780:CDS 25.0%
!!! ATATTAGTGGTTAATTTGTC+GGG + chr2_2:30504524-30504543 None:intergenic 25.0%
! AATTTCATCGCTTAATTCAA+AGG - chr2_2:30504602-30504621 Msa0247780:intron 25.0%
! TTTACATTAACACATCATTG+TGG - chr2_2:30504698-30504717 Msa0247780:intron 25.0%
! TTACATTAACACATCATTGT+GGG - chr2_2:30504699-30504718 Msa0247780:intron 25.0%
! ATGATTGCATTGGATATATT+AGG - chr2_2:30504777-30504796 Msa0247780:intron 25.0%
! AAGTCCTTTGTAATCATATT+GGG + chr2_2:30504805-30504824 None:intergenic 25.0%
! CTAAAATTGCAATAAATGCA+AGG + chr2_2:30504830-30504849 None:intergenic 25.0%
!!! CAGACCAAAAGTTTTGTTAT+TGG - chr2_2:30504230-30504249 Msa0247780:CDS 30.0%
AGAAATAGTAGCAGTTATTG+GGG + chr2_2:30504270-30504289 None:intergenic 30.0%
CAGAAATAGTAGCAGTTATT+GGG + chr2_2:30504271-30504290 None:intergenic 30.0%
AGCTGGAGTTTGATTAAATT+TGG + chr2_2:30504294-30504313 None:intergenic 30.0%
TTGAAAACTTACACAAAAGC+TGG + chr2_2:30504311-30504330 None:intergenic 30.0%
!! TATTAGTGGTTAATTTGTCG+GGG + chr2_2:30504523-30504542 None:intergenic 30.0%
TGTAAGAGGAAAATAGAGAA+AGG - chr2_2:30504558-30504577 Msa0247780:intron 30.0%
TACATTAACACATCATTGTG+GGG - chr2_2:30504700-30504719 Msa0247780:intron 30.0%
AGTCCTTTGTAATCATATTG+GGG + chr2_2:30504804-30504823 None:intergenic 30.0%
GAAGTCCTTTGTAATCATAT+TGG + chr2_2:30504806-30504825 None:intergenic 30.0%
!!! TTTTTGGGTGAAGTTAACTA+TGG - chr2_2:30504952-30504971 Msa0247780:intron 30.0%
TTTGAAAGCTATTGCAATAG+AGG - chr2_2:30505070-30505089 Msa0247780:CDS 30.0%
!!! CAGACCAAAAGTTTTGTTAT+TGG - chr2_2:30504230-30504249 Msa0247780:CDS 30.0%
AGAAATAGTAGCAGTTATTG+GGG + chr2_2:30504270-30504289 None:intergenic 30.0%
CAGAAATAGTAGCAGTTATT+GGG + chr2_2:30504271-30504290 None:intergenic 30.0%
AGCTGGAGTTTGATTAAATT+TGG + chr2_2:30504294-30504313 None:intergenic 30.0%
TTGAAAACTTACACAAAAGC+TGG + chr2_2:30504311-30504330 None:intergenic 30.0%
!! TATTAGTGGTTAATTTGTCG+GGG + chr2_2:30504523-30504542 None:intergenic 30.0%
TGTAAGAGGAAAATAGAGAA+AGG - chr2_2:30504558-30504577 Msa0247780:intron 30.0%
TACATTAACACATCATTGTG+GGG - chr2_2:30504700-30504719 Msa0247780:intron 30.0%
AGTCCTTTGTAATCATATTG+GGG + chr2_2:30504804-30504823 None:intergenic 30.0%
GAAGTCCTTTGTAATCATAT+TGG + chr2_2:30504806-30504825 None:intergenic 30.0%
!!! TTTTTGGGTGAAGTTAACTA+TGG - chr2_2:30504952-30504971 Msa0247780:intron 30.0%
TTTGAAAGCTATTGCAATAG+AGG - chr2_2:30505070-30505089 Msa0247780:CDS 30.0%
! GGTGCCAATAACAAAACTTT+TGG + chr2_2:30504237-30504256 None:intergenic 35.0%
GCAGAAATAGTAGCAGTTAT+TGG + chr2_2:30504272-30504291 None:intergenic 35.0%
TAGTAGAAGAGGTCGAATTT+CGG + chr2_2:30504487-30504506 None:intergenic 35.0%
!! ATTAGTGGTTAATTTGTCGG+GGG + chr2_2:30504522-30504541 None:intergenic 35.0%
! AAATGCTAGTCTCCATAACT+TGG - chr2_2:30504752-30504771 Msa0247780:intron 35.0%
ATGCAATCATCACCAAGTTA+TGG + chr2_2:30504767-30504786 None:intergenic 35.0%
!! TAACTTGGTGATGATTGCAT+TGG - chr2_2:30504767-30504786 Msa0247780:intron 35.0%
ATGGTAATTCACATGCAAGA+TGG - chr2_2:30505029-30505048 Msa0247780:CDS 35.0%
TGGTAATTCACATGCAAGAT+GGG - chr2_2:30505030-30505049 Msa0247780:CDS 35.0%
GCCAATGAAAGAAGCAATAA+GGG + chr2_2:30505104-30505123 None:intergenic 35.0%
AGCCAATGAAAGAAGCAATA+AGG + chr2_2:30505105-30505124 None:intergenic 35.0%
! GGTGCCAATAACAAAACTTT+TGG + chr2_2:30504237-30504256 None:intergenic 35.0%
GCAGAAATAGTAGCAGTTAT+TGG + chr2_2:30504272-30504291 None:intergenic 35.0%
TAGTAGAAGAGGTCGAATTT+CGG + chr2_2:30504487-30504506 None:intergenic 35.0%
!! ATTAGTGGTTAATTTGTCGG+GGG + chr2_2:30504522-30504541 None:intergenic 35.0%
! AAATGCTAGTCTCCATAACT+TGG - chr2_2:30504752-30504771 Msa0247780:intron 35.0%
ATGCAATCATCACCAAGTTA+TGG + chr2_2:30504767-30504786 None:intergenic 35.0%
!! TAACTTGGTGATGATTGCAT+TGG - chr2_2:30504767-30504786 Msa0247780:intron 35.0%
ATGGTAATTCACATGCAAGA+TGG - chr2_2:30505029-30505048 Msa0247780:CDS 35.0%
TGGTAATTCACATGCAAGAT+GGG - chr2_2:30505030-30505049 Msa0247780:CDS 35.0%
GCCAATGAAAGAAGCAATAA+GGG + chr2_2:30505104-30505123 None:intergenic 35.0%
AGCCAATGAAAGAAGCAATA+AGG + chr2_2:30505105-30505124 None:intergenic 35.0%
ATACGATTGGACTACTCGTT+CGG + chr2_2:30504430-30504449 None:intergenic 40.0%
TGTGTCTGAATCGATACGAT+TGG + chr2_2:30504443-30504462 None:intergenic 40.0%
GAGAGAGTTGTTAGTAGAAG+AGG + chr2_2:30504498-30504517 None:intergenic 40.0%
AGGTTCTTTGTGATAGCCAA+TGG - chr2_2:30504729-30504748 Msa0247780:intron 40.0%
ATGGAGACTAGCATTTCCAT+TGG + chr2_2:30504748-30504767 None:intergenic 40.0%
GGACCCCAATATGATTACAA+AGG - chr2_2:30504798-30504817 Msa0247780:intron 40.0%
AGCAACATTCATGTCAGCAT+TGG - chr2_2:30505000-30505019 Msa0247780:CDS 40.0%
GCAACATTCATGTCAGCATT+GGG - chr2_2:30505001-30505020 Msa0247780:CDS 40.0%
! ATGTCAGCATTGGGAAGAAA+TGG - chr2_2:30505010-30505029 Msa0247780:CDS 40.0%
GAAAGCTATTGCAATAGAGG+TGG - chr2_2:30505073-30505092 Msa0247780:CDS 40.0%
GCCCTTATTGCTTCTTTCAT+TGG - chr2_2:30505100-30505119 Msa0247780:CDS 40.0%
ATACGATTGGACTACTCGTT+CGG + chr2_2:30504430-30504449 None:intergenic 40.0%
TGTGTCTGAATCGATACGAT+TGG + chr2_2:30504443-30504462 None:intergenic 40.0%
GAGAGAGTTGTTAGTAGAAG+AGG + chr2_2:30504498-30504517 None:intergenic 40.0%
AGGTTCTTTGTGATAGCCAA+TGG - chr2_2:30504729-30504748 Msa0247780:intron 40.0%
ATGGAGACTAGCATTTCCAT+TGG + chr2_2:30504748-30504767 None:intergenic 40.0%
GGACCCCAATATGATTACAA+AGG - chr2_2:30504798-30504817 Msa0247780:intron 40.0%
AGCAACATTCATGTCAGCAT+TGG - chr2_2:30505000-30505019 Msa0247780:CDS 40.0%
GCAACATTCATGTCAGCATT+GGG - chr2_2:30505001-30505020 Msa0247780:CDS 40.0%
! ATGTCAGCATTGGGAAGAAA+TGG - chr2_2:30505010-30505029 Msa0247780:CDS 40.0%
GAAAGCTATTGCAATAGAGG+TGG - chr2_2:30505073-30505092 Msa0247780:CDS 40.0%
GCCCTTATTGCTTCTTTCAT+TGG - chr2_2:30505100-30505119 Msa0247780:CDS 40.0%
GGTGAAGAGAAAGTTGAACG+TGG - chr2_2:30504095-30504114 Msa0247780:CDS 45.0%
TGCAGCTGCAACACTTGTAA+TGG - chr2_2:30504196-30504215 Msa0247780:CDS 45.0%
!!! AGTTTTGTTATTGGCACCGC+TGG - chr2_2:30504239-30504258 Msa0247780:CDS 45.0%
! AGTTATTGGGGTGTTACCAG+CGG + chr2_2:30504258-30504277 None:intergenic 45.0%
TACGATTGGACTACTCGTTC+GGG + chr2_2:30504429-30504448 None:intergenic 45.0%
ACATCATTGTGGGGTGAAAC+AGG - chr2_2:30504709-30504728 Msa0247780:intron 45.0%
GGTGAAGTTAACTATGGCTC+TGG - chr2_2:30504958-30504977 Msa0247780:intron 45.0%
AGCTATTGCAATAGAGGTGG+TGG - chr2_2:30505076-30505095 Msa0247780:CDS 45.0%
GGAGCATGGTTAATGCGATT+AGG + chr2_2:30505178-30505197 None:intergenic 45.0%
GGTGAAGAGAAAGTTGAACG+TGG - chr2_2:30504095-30504114 Msa0247780:CDS 45.0%
TGCAGCTGCAACACTTGTAA+TGG - chr2_2:30504196-30504215 Msa0247780:CDS 45.0%
!!! AGTTTTGTTATTGGCACCGC+TGG - chr2_2:30504239-30504258 Msa0247780:CDS 45.0%
! AGTTATTGGGGTGTTACCAG+CGG + chr2_2:30504258-30504277 None:intergenic 45.0%
TACGATTGGACTACTCGTTC+GGG + chr2_2:30504429-30504448 None:intergenic 45.0%
ACATCATTGTGGGGTGAAAC+AGG - chr2_2:30504709-30504728 Msa0247780:intron 45.0%
GGTGAAGTTAACTATGGCTC+TGG - chr2_2:30504958-30504977 Msa0247780:intron 45.0%
AGCTATTGCAATAGAGGTGG+TGG - chr2_2:30505076-30505095 Msa0247780:CDS 45.0%
GGAGCATGGTTAATGCGATT+AGG + chr2_2:30505178-30505197 None:intergenic 45.0%
!!! ATTGATAAATAATATTTTTT+TGG - chr2_2:30504936-30504955 Msa0247780:intron 5.0%
!!! TTGATAAATAATATTTTTTT+GGG - chr2_2:30504937-30504956 Msa0247780:intron 5.0%
!!! ATTGATAAATAATATTTTTT+TGG - chr2_2:30504936-30504955 Msa0247780:intron 5.0%
!!! TTGATAAATAATATTTTTTT+GGG - chr2_2:30504937-30504956 Msa0247780:intron 5.0%
! TACAAGTGTTGCAGCTGCAG+TGG + chr2_2:30504195-30504214 None:intergenic 50.0%
ACGATTGGACTACTCGTTCG+GGG + chr2_2:30504428-30504447 None:intergenic 50.0%
AGGCTTGAGAAGCTTGGCAA+TGG + chr2_2:30505158-30505177 None:intergenic 50.0%
GCGATTAGGCTTGAGAAGCT+TGG + chr2_2:30505164-30505183 None:intergenic 50.0%
! TACAAGTGTTGCAGCTGCAG+TGG + chr2_2:30504195-30504214 None:intergenic 50.0%
ACGATTGGACTACTCGTTCG+GGG + chr2_2:30504428-30504447 None:intergenic 50.0%
AGGCTTGAGAAGCTTGGCAA+TGG + chr2_2:30505158-30505177 None:intergenic 50.0%
GCGATTAGGCTTGAGAAGCT+TGG + chr2_2:30505164-30505183 None:intergenic 50.0%
CGATTGGACTACTCGTTCGG+GGG + chr2_2:30504427-30504446 None:intergenic 55.0%
!! ACTATGGCTCTGGCATCAGC+TGG - chr2_2:30504968-30504987 Msa0247780:intron 55.0%
CGATTGGACTACTCGTTCGG+GGG + chr2_2:30504427-30504446 None:intergenic 55.0%
!! ACTATGGCTCTGGCATCAGC+TGG - chr2_2:30504968-30504987 Msa0247780:intron 55.0%
GCTCTGGCATCAGCTGGAGA+TGG - chr2_2:30504974-30504993 Msa0247780:CDS 60.0%
GCTCTGGCATCAGCTGGAGA+TGG - chr2_2:30504974-30504993 Msa0247780:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 30504080 30505207 30504080 ID=Msa0247780;Name=Msa0247780
chr2_2 mRNA 30504080 30505207 30504080 ID=Msa0247780-mRNA-1;Parent=Msa0247780;Name=Msa0247780-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|201
chr2_2 exon 30504969 30505207 30504969 ID=Msa0247780-mRNA-1:exon:10726;Parent=Msa0247780-mRNA-1
chr2_2 exon 30504433 30504556 30504433 ID=Msa0247780-mRNA-1:exon:10725;Parent=Msa0247780-mRNA-1
chr2_2 exon 30504080 30504322 30504080 ID=Msa0247780-mRNA-1:exon:10724;Parent=Msa0247780-mRNA-1
chr2_2 CDS 30504969 30505207 30504969 ID=Msa0247780-mRNA-1:cds;Parent=Msa0247780-mRNA-1
chr2_2 CDS 30504433 30504556 30504433 ID=Msa0247780-mRNA-1:cds;Parent=Msa0247780-mRNA-1
chr2_2 CDS 30504080 30504322 30504080 ID=Msa0247780-mRNA-1:cds;Parent=Msa0247780-mRNA-1
Gene Sequence

>Msa0247780

ATGGCTTCAAGAAATGGTGAAGAGAAAGTTGAACGTGGCTTCAATGATGTTCATGAAAGAAAAACAAAGAATGATTGGATTCTTTTATCTCTTAGGGTTGTTGCATTTTTTGCCACTGCAGCTGCAACACTTGTAATGGCACTCAACAAACAGACCAAAAGTTTTGTTATTGGCACCGCTGGTAACACCCCAATAACTGCTACTATTTCTGCCAAATTTAATCAAACTCCAGCTTTTGTGTTCTTTGTGATAGCCAATGGAAATGCTAGTCTCCATAACTTGGTGATGATTGCATTGGATATATTAGGACCCCAATATGATTACAAAGGACTTCGCCTTGCATTTATTGCAATTTTAGACATGTTAACTATGGCTCTGGCATCAGCTGGAGATGGTGCAGCAACATTCATGTCAGCATTGGGAAGAAATGGTAATTCACATGCAAGATGGGATAAGATTTGTGACAAATTTGAAAGCTATTGCAATAGAGGTGGTGGTGCCCTTATTGCTTCTTTCATTGGCTTCATTCTTCTCTTGATTATCACTGTGATGTCCATTGCCAAGCTTCTCAAGCCTAATCGCATTAACCATGCTCCCAGTCCTTGA

Protein sequence

>Msa0247780

MASRNGEEKVERGFNDVHERKTKNDWILLSLRVVAFFATAAATLVMALNKQTKSFVIGTAGNTPITATISAKFNQTPAFVFFVIANGNASLHNLVMIALDILGPQYDYKGLRLAFIAILDMLTMALASAGDGAATFMSALGRNGNSHARWDKICDKFESYCNRGGGALIASFIGFILLLIITVMSIAKLLKPNRINHAPSP*