Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819560 | AES99814.1 | 96.667 | 210 | 6 | 1 | 1 | 210 | 1 | 209 | 4.19e-147 | 417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819560 | G7KH71 | 96.667 | 210 | 6 | 1 | 1 | 210 | 1 | 209 | 2.00e-147 | 417 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101880 | Msa0819560 | 0.804543 | 2.053602e-49 | -8.615850e-47 |
| Msa0610500 | Msa0819560 | 0.801046 | 1.083140e-48 | -8.615850e-47 |
| Msa0651150 | Msa0819560 | 0.803474 | 3.426453e-49 | -8.615850e-47 |
| Msa0677080 | Msa0819560 | 0.804920 | 1.713519e-49 | -8.615850e-47 |
| Msa0783230 | Msa0819560 | 0.805356 | 1.388954e-49 | -8.615850e-47 |
| Msa0819560 | Msa0922030 | 0.809808 | 1.575915e-50 | -8.615850e-47 |
| Msa0819560 | Msa0939000 | 0.811902 | 5.548241e-51 | -8.615850e-47 |
| Msa0819560 | Msa1083210 | 0.813276 | 2.777529e-51 | -8.615850e-47 |
| Msa0819560 | Msa1127830 | 0.804094 | 2.547836e-49 | -8.615850e-47 |
| Msa0819560 | Msa1249920 | 0.814503 | 1.490654e-51 | -8.615850e-47 |
| Msa0819560 | Msa1280620 | 0.814455 | 1.527281e-51 | -8.615850e-47 |
| Msa0819560 | Msa1390230 | 0.813622 | 2.331371e-51 | -8.615850e-47 |
| Msa0819560 | Msa1415940 | 0.802859 | 4.592181e-49 | -8.615850e-47 |
| Msa0135420 | Msa0819560 | 0.817163 | 3.801788e-52 | -8.615850e-47 |
| Msa0185590 | Msa0819560 | 0.804484 | 2.113426e-49 | -8.615850e-47 |
| Msa0208810 | Msa0819560 | 0.818928 | 1.517618e-52 | -8.615850e-47 |
| Msa0377530 | Msa0819560 | 0.805467 | 1.316604e-49 | -8.615850e-47 |
| Msa0415810 | Msa0819560 | 0.803587 | 3.247090e-49 | -8.615850e-47 |
| Msa0460930 | Msa0819560 | 0.803603 | 3.221650e-49 | -8.615850e-47 |
| Msa0464900 | Msa0819560 | 0.805530 | 1.277169e-49 | -8.615850e-47 |
| Msa0276920 | Msa0819560 | 0.803553 | 3.300276e-49 | -8.615850e-47 |
| Msa0288730 | Msa0819560 | 0.815967 | 7.048205e-52 | -8.615850e-47 |
| Msa0506940 | Msa0819560 | 0.805001 | 1.647742e-49 | -8.615850e-47 |
| Msa0517490 | Msa0819560 | 0.808202 | 3.476918e-50 | -8.615850e-47 |
| Msa0545060 | Msa0819560 | 0.807667 | 4.520281e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819560 | MtrunA17_Chr5g0438771 | 96.667 | 210 | 6 | 1 | 1 | 210 | 1 | 209 | 3.86e-151 | 417 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819560 | AT1G04985.1 | 55.102 | 196 | 82 | 2 | 1 | 196 | 1 | 190 | 5.80e-66 | 202 |
| Msa0819560 | AT1G04985.2 | 50.746 | 134 | 60 | 2 | 64 | 197 | 6 | 133 | 2.40e-38 | 129 |
Find 73 sgRNAs with CRISPR-Local
Find 363 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCATGTATTGATACTAAT+TGG | 0.119433 | 5_3:+56050968 | None:intergenic |
| CCAAGCATTTGCCATCTTCT+AGG | 0.208392 | 5_3:+56051146 | None:intergenic |
| TAAGAATAATGCAGCGATTA+AGG | 0.242778 | 5_3:-56055927 | Msa0819560:exon |
| CCAAGCATTGGCCACCCTTT+AGG | 0.263639 | 5_3:+56051113 | None:intergenic |
| GTGCAAAATCTGGCTATAAT+TGG | 0.278731 | 5_3:+56050903 | None:intergenic |
| GCCGGAACCACCTTACTTAT+CGG | 0.313619 | 5_3:-56054384 | Msa0819560:CDS |
| AAATGCACATACCTTACTTT+TGG | 0.324400 | 5_3:-56050761 | Msa0819560:three_prime_UTR |
| TCCGGCACTTTGGTTCTTCT+AGG | 0.335965 | 5_3:+56051056 | None:intergenic |
| CCCGATAAGTAAGGTGGTTC+CGG | 0.350075 | 5_3:+56054383 | None:intergenic |
| AACTTGAATTGCCATCCTTT+AGG | 0.364419 | 5_3:+56051080 | None:intergenic |
| AACATCTGAAACGACAATAA+AGG | 0.381576 | 5_3:-56051021 | Msa0819560:CDS |
| TATAATACCAGTGCAAAATC+TGG | 0.382716 | 5_3:+56050893 | None:intergenic |
| TCTGAAATCAAAGATATTGT+TGG | 0.411064 | 5_3:-56054447 | Msa0819560:CDS |
| TTCATGTATTGATACTAATT+GGG | 0.412560 | 5_3:+56050969 | None:intergenic |
| CCGGAACCACCTTACTTATC+GGG | 0.413100 | 5_3:-56054383 | Msa0819560:intron |
| GATATATACAGCTTGTTCAA+TGG | 0.421041 | 5_3:+56054583 | None:intergenic |
| GATTATGAAATTTATAATGA+AGG | 0.421066 | 5_3:-56050784 | Msa0819560:three_prime_UTR |
| CCTAAAGGGTGGCCAATGCT+TGG | 0.430902 | 5_3:-56051113 | Msa0819560:CDS |
| ATACAGCTTGTTCAATGGAT+TGG | 0.438567 | 5_3:+56054588 | None:intergenic |
| AAAGATATTGTTGGTCGTCC+TGG | 0.446008 | 5_3:-56054438 | Msa0819560:CDS |
| CTAAAGGGTGGCCAATGCTT+GGG | 0.447978 | 5_3:-56051112 | Msa0819560:CDS |
| AGCTAAGGGCAAGGAGCAGC+AGG | 0.452161 | 5_3:+56050861 | None:intergenic |
| ACACAACCAAGAAGTTCAAA+AGG | 0.463950 | 5_3:-56051199 | Msa0819560:CDS |
| CCGGCACTTTGGTTCTTCTA+GGG | 0.468972 | 5_3:+56051057 | None:intergenic |
| CCTGCTTGTGCAGCCACTGC+CGG | 0.471438 | 5_3:-56054402 | Msa0819560:CDS |
| GCATCATCGACACATATTGC+TGG | 0.474418 | 5_3:-56050996 | Msa0819560:CDS |
| TGGGATGGCGAGGTGGAAGC+TGG | 0.476493 | 5_3:-56051223 | Msa0819560:CDS |
| TATATATGAAGATATGGATT+GGG | 0.478001 | 5_3:-56051242 | Msa0819560:intron |
| CACTGCAGTATCCGGCACTT+TGG | 0.480264 | 5_3:+56051046 | None:intergenic |
| AAGTAAGGTGGTTCCGGCAG+TGG | 0.484097 | 5_3:+56054389 | None:intergenic |
| CTTGTCAAACACCAAAAGTA+AGG | 0.491045 | 5_3:+56050750 | None:intergenic |
| CTTGGCAAGTTAAAACCTAA+AGG | 0.491699 | 5_3:-56051128 | Msa0819560:CDS |
| CCGGCAGTGGCTGCACAAGC+AGG | 0.492970 | 5_3:+56054402 | None:intergenic |
| TGAAACAAACCCGATAAGTA+AGG | 0.498368 | 5_3:+56054374 | None:intergenic |
| GGATGAAGAACATGAAGCTA+AGG | 0.509109 | 5_3:+56050846 | None:intergenic |
| TTATATATGAAGATATGGAT+TGG | 0.511769 | 5_3:-56051243 | Msa0819560:intron |
| ATAATACATGTTATATAACT+TGG | 0.520380 | 5_3:+56050641 | None:intergenic |
| AGCAACGGAGAATGAATTTG+AGG | 0.522905 | 5_3:+56055888 | None:intergenic |
| TCCGTCGCTACTGCTTTCAT+CGG | 0.524613 | 5_3:-56055681 | Msa0819560:intron |
| TTGGCAAGTTAAAACCTAAA+GGG | 0.526369 | 5_3:-56051127 | Msa0819560:CDS |
| GCAGGAATACTGACCCCTCC+AGG | 0.529267 | 5_3:+56054420 | None:intergenic |
| ATATAACTTGGTCATTCCGC+AGG | 0.529280 | 5_3:+56050653 | None:intergenic |
| CTTGGGAACATAAAACCTAA+AGG | 0.531447 | 5_3:-56051095 | Msa0819560:CDS |
| AGCAGTAGCGACGGATGCAA+TGG | 0.534561 | 5_3:+56055689 | None:intergenic |
| GACAGATTAAACCTAGAAGA+TGG | 0.534682 | 5_3:-56051157 | Msa0819560:CDS |
| CCTAGAAGATGGCAAATGCT+TGG | 0.544955 | 5_3:-56051146 | Msa0819560:CDS |
| GGAGGAGCGAATTACCTTAG+TGG | 0.545515 | 5_3:+56055810 | None:intergenic |
| ATATCCCTCTCTCCTCATAG+TGG | 0.547517 | 5_3:-56056012 | Msa0819560:five_prime_UTR |
| CCCTAGAAGAACCAAAGTGC+CGG | 0.554042 | 5_3:-56051057 | Msa0819560:CDS |
| CTTAGACACTCTTCACATGA+AGG | 0.554706 | 5_3:+56050825 | None:intergenic |
| ATATTGTTGGTCGTCCTGGA+GGG | 0.567058 | 5_3:-56054434 | Msa0819560:CDS |
| ACCTTGAGTCATCCACTATG+AGG | 0.571313 | 5_3:+56056000 | None:intergenic |
| TTTGCGTTTAATGTTAGCAA+CGG | 0.573762 | 5_3:+56055873 | None:intergenic |
| TCCTCATAGTGGATGACTCA+AGG | 0.579907 | 5_3:-56056001 | Msa0819560:five_prime_UTR |
| GGAACATAAAACCTAAAGGA+TGG | 0.581849 | 5_3:-56051091 | Msa0819560:CDS |
| ATGAAACAAGAGTTAATGAA+AGG | 0.583936 | 5_3:-56054613 | Msa0819560:CDS |
| CACAACCAAGAAGTTCAAAA+GGG | 0.587225 | 5_3:-56051198 | Msa0819560:CDS |
| TCATCCACTATGAGGAGAGA+GGG | 0.587286 | 5_3:+56056008 | None:intergenic |
| AGGGAGCAGATGAAATTGCT+AGG | 0.588060 | 5_3:-56051179 | Msa0819560:CDS |
| TATTGTTGGTCGTCCTGGAG+GGG | 0.605606 | 5_3:-56054433 | Msa0819560:CDS |
| TATGGATTGGGATGGCGAGG+TGG | 0.614449 | 5_3:-56051230 | Msa0819560:CDS |
| TATGAAGATATGGATTGGGA+TGG | 0.614620 | 5_3:-56051238 | Msa0819560:intron |
| GATATTGTTGGTCGTCCTGG+AGG | 0.617569 | 5_3:-56054435 | Msa0819560:CDS |
| AGATATGGATTGGGATGGCG+AGG | 0.617890 | 5_3:-56051233 | Msa0819560:CDS |
| ACCGATGAAAGCAGTAGCGA+CGG | 0.626790 | 5_3:+56055680 | None:intergenic |
| GATGAAGAACATGAAGCTAA+GGG | 0.628168 | 5_3:+56050847 | None:intergenic |
| AGAACATGAAGCTAAGGGCA+AGG | 0.640862 | 5_3:+56050852 | None:intergenic |
| GTCATCCACTATGAGGAGAG+AGG | 0.643652 | 5_3:+56056007 | None:intergenic |
| ATAGTAATTATGTGTTCCTG+CGG | 0.657257 | 5_3:-56050669 | Msa0819560:three_prime_UTR |
| GCAAGTTAAAACCTAAAGGG+TGG | 0.665984 | 5_3:-56051124 | Msa0819560:CDS |
| AACAAACCCGATAAGTAAGG+TGG | 0.674337 | 5_3:+56054377 | None:intergenic |
| TTGTCTAATCAGATAAACTG+AGG | 0.694750 | 5_3:-56050942 | Msa0819560:three_prime_UTR |
| TTCCAACCGTGAAAACAACG+CGG | 0.823624 | 5_3:+56055715 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATTAAGTAATATAATTAA+TGG | - | chr5_3:56051850-56051869 | Msa0819560:intron | 10.0% |
| !!! | TTTTTTTGGTTTAAAATTTT+AGG | - | chr5_3:56052052-56052071 | Msa0819560:intron | 10.0% |
| !!! | TTTTTTGGTTTAAAATTTTA+GGG | - | chr5_3:56052053-56052072 | Msa0819560:intron | 10.0% |
| !!! | TATCATTTAGTTTTATTATT+AGG | - | chr5_3:56052623-56052642 | Msa0819560:intron | 10.0% |
| !!! | ATCATTTAGTTTTATTATTA+GGG | - | chr5_3:56052624-56052643 | Msa0819560:intron | 10.0% |
| !! | AATATAGTAAGTTAAGTTAT+AGG | - | chr5_3:56051258-56051277 | Msa0819560:intron | 15.0% |
| !! | ATATAGTAAGTTAAGTTATA+GGG | - | chr5_3:56051259-56051278 | Msa0819560:intron | 15.0% |
| !! | TCTATTAAACTATATCAAAT+TGG | + | chr5_3:56051318-56051337 | None:intergenic | 15.0% |
| !! | TGAATATGAATATTTGAAAA+AGG | + | chr5_3:56051349-56051368 | None:intergenic | 15.0% |
| !! | AGATTATGAATATTTCAAAA+AGG | + | chr5_3:56051689-56051708 | None:intergenic | 15.0% |
| !! | TATAAAAAGAAGTTAATCAT+AGG | + | chr5_3:56052376-56052395 | None:intergenic | 15.0% |
| !!! | ACAAAAATTAATTTAGTTCA+TGG | - | chr5_3:56053227-56053246 | Msa0819560:intron | 15.0% |
| !!! | TTTTTTTTTTTGCAAATGAT+TGG | - | chr5_3:56053586-56053605 | Msa0819560:intron | 15.0% |
| !!! | TTTTTTTTTTGCAAATGATT+GGG | - | chr5_3:56053587-56053606 | Msa0819560:intron | 15.0% |
| !!! | GAATTTTTTTAATGTAATCT+GGG | - | chr5_3:56053839-56053858 | Msa0819560:intron | 15.0% |
| !!! | TTTAATTTCACTAATATAGA+AGG | - | chr5_3:56055086-56055105 | Msa0819560:intron | 15.0% |
| !! | ATTTAAAAATTAAGACTACA+AGG | + | chr5_3:56055440-56055459 | None:intergenic | 15.0% |
| !! | GATTATGAAATTTATAATGA+AGG | - | chr5_3:56055924-56055943 | Msa0819560:exon | 15.0% |
| !! | ATAATACATGTTATATAACT+TGG | + | chr5_3:56056070-56056089 | None:intergenic | 15.0% |
| !!! | TTTATTCATTTTTTGCCTAT+TGG | + | chr5_3:56051126-56051145 | None:intergenic | 20.0% |
| !! | ATATTGAGTGGTTAAATATA+GGG | - | chr5_3:56051291-56051310 | Msa0819560:intron | 20.0% |
| !! | TGATATAGTTTAATAGAGTT+AGG | - | chr5_3:56051321-56051340 | Msa0819560:intron | 20.0% |
| !! | GATATAGTTTAATAGAGTTA+GGG | - | chr5_3:56051322-56051341 | Msa0819560:intron | 20.0% |
| !! | TATTCATATTCATAATCTCA+AGG | - | chr5_3:56051363-56051382 | Msa0819560:intron | 20.0% |
| !! | ATTCATATTCATAATCTCAA+GGG | - | chr5_3:56051364-56051383 | Msa0819560:intron | 20.0% |
| !! | GCTAAATTAAACTATCAAAT+TGG | + | chr5_3:56051655-56051674 | None:intergenic | 20.0% |
| !!! | TTTGAAATATTCATAATCTC+AGG | - | chr5_3:56051690-56051709 | Msa0819560:intron | 20.0% |
| !! | TTGAAATATTCATAATCTCA+GGG | - | chr5_3:56051691-56051710 | Msa0819560:intron | 20.0% |
| !! | ATTATTTACGAGTTAACATA+AGG | + | chr5_3:56051792-56051811 | None:intergenic | 20.0% |
| !! | TAAATAATAATTTGACAGCA+AGG | - | chr5_3:56051804-56051823 | Msa0819560:intron | 20.0% |
| !! | AAATAATAATTTGACAGCAA+GGG | - | chr5_3:56051805-56051824 | Msa0819560:intron | 20.0% |
| !! | ATAATTAATGGAGTAATTTG+AGG | - | chr5_3:56051862-56051881 | Msa0819560:intron | 20.0% |
| !! | ATCAAATATACAATCAAATC+AGG | + | chr5_3:56052026-56052045 | None:intergenic | 20.0% |
| !!! | ATTTAGTTTTATTATTAGGG+CGG | - | chr5_3:56052627-56052646 | Msa0819560:intron | 20.0% |
| !!! | AAAGATTGATTGCAATTTTA+TGG | - | chr5_3:56052666-56052685 | Msa0819560:intron | 20.0% |
| !!! | TTGTACTTGTTTAATTTACT+TGG | - | chr5_3:56052817-56052836 | Msa0819560:intron | 20.0% |
| !!! | TGTATATTCAGCATTTTTTA+TGG | - | chr5_3:56052875-56052894 | Msa0819560:intron | 20.0% |
| !! | TTCAGCAAATTAATAAAGAA+AGG | - | chr5_3:56052911-56052930 | Msa0819560:intron | 20.0% |
| !! | TCAGCAAATTAATAAAGAAA+GGG | - | chr5_3:56052912-56052931 | Msa0819560:intron | 20.0% |
| !!! | CTAAATTAATTTTTGTGATG+TGG | + | chr5_3:56053223-56053242 | None:intergenic | 20.0% |
| !!! | TTTTTCATTAAGTAAGAGTA+AGG | - | chr5_3:56053672-56053691 | Msa0819560:intron | 20.0% |
| !! | TAACAAATACTATAGCTTAA+AGG | - | chr5_3:56053727-56053746 | Msa0819560:intron | 20.0% |
| !! | TATAGCTTAAAGGTAAAAAT+TGG | - | chr5_3:56053737-56053756 | Msa0819560:intron | 20.0% |
| !!! | GGAATTTTTTTAATGTAATC+TGG | - | chr5_3:56053838-56053857 | Msa0819560:intron | 20.0% |
| !!! | AAATTTTCTTTTAAGCTTAG+TGG | + | chr5_3:56053877-56053896 | None:intergenic | 20.0% |
| !! | TGAAAATGTTAAGATTTAAG+TGG | - | chr5_3:56053988-56054007 | Msa0819560:intron | 20.0% |
| !!! | ATCACTATTTTAGTAAATGA+TGG | + | chr5_3:56054320-56054339 | None:intergenic | 20.0% |
| !!! | GAAAGTTAAATTTTGAAAGT+TGG | - | chr5_3:56054660-56054679 | Msa0819560:intron | 20.0% |
| !!! | AAACTAAAAGGGTATAAAAA+TGG | - | chr5_3:56054956-56054975 | Msa0819560:intron | 20.0% |
| !! | TTAGCTTATATATGAAGATA+TGG | - | chr5_3:56055460-56055479 | Msa0819560:intron | 20.0% |
| !! | TTATATATGAAGATATGGAT+TGG | - | chr5_3:56055465-56055484 | Msa0819560:intron | 20.0% |
| !! | TATATATGAAGATATGGATT+GGG | - | chr5_3:56055466-56055485 | Msa0819560:intron | 20.0% |
| !!! | TTCATGTATTGATACTAATT+GGG | + | chr5_3:56055742-56055761 | None:intergenic | 20.0% |
| !!! | ATTCATGTATTGATACTAAT+TGG | + | chr5_3:56055743-56055762 | None:intergenic | 20.0% |
| !!! | TTCATTGATTTTAAGATTGT+TGG | - | chr5_3:56056015-56056034 | Msa0819560:five_prime_UTR | 20.0% |
| ! | ATTCATATTAGTCATTCTGA+AGG | - | chr5_3:56051214-56051233 | Msa0819560:CDS | 25.0% |
| ! | GATATTGAGTGGTTAAATAT+AGG | - | chr5_3:56051290-56051309 | Msa0819560:intron | 25.0% |
| !! | TTTTGCATAAGCTCAAAAAA+AGG | + | chr5_3:56051448-56051467 | None:intergenic | 25.0% |
| ! | TATTATTCATAAGCTTGTCA+AGG | - | chr5_3:56051497-56051516 | Msa0819560:intron | 25.0% |
| ! | TTCAACATAATTCAAAGTCA+GGG | - | chr5_3:56051919-56051938 | Msa0819560:intron | 25.0% |
| ! | ATGAAACAAGAGTTAATGAA+AGG | - | chr5_3:56052095-56052114 | Msa0819560:intron | 25.0% |
| ! | TGTATATATCTATGTCTCTT+TGG | - | chr5_3:56052138-56052157 | Msa0819560:intron | 25.0% |
| !! | TCTGAAATCAAAGATATTGT+TGG | - | chr5_3:56052261-56052280 | Msa0819560:intron | 25.0% |
| !! | ACTTCTTTTTATAGCCAAAT+TGG | - | chr5_3:56052383-56052402 | Msa0819560:intron | 25.0% |
| ! | AGATGATGTTAACTATCAAT+TGG | + | chr5_3:56052535-56052554 | None:intergenic | 25.0% |
| ! | TTAATTTACTTGGTCAAAGT+TGG | - | chr5_3:56052827-56052846 | Msa0819560:intron | 25.0% |
| ! | CAGCAAATTAATAAAGAAAG+GGG | - | chr5_3:56052913-56052932 | Msa0819560:intron | 25.0% |
| !! | CACTCAAAAGTATGTATTAA+GGG | - | chr5_3:56053412-56053431 | Msa0819560:intron | 25.0% |
| !! | ACTCAAAAGTATGTATTAAG+GGG | - | chr5_3:56053413-56053432 | Msa0819560:intron | 25.0% |
| ! | CAAGATGAAAAGATAGATAA+AGG | + | chr5_3:56053508-56053527 | None:intergenic | 25.0% |
| !! | CTTTATCTATCTTTTCATCT+TGG | - | chr5_3:56053506-56053525 | Msa0819560:intron | 25.0% |
| ! | CATGTTTATTAAACATGTCT+TGG | + | chr5_3:56053534-56053553 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAACGTGCATTG+TGG | + | chr5_3:56053571-56053590 | None:intergenic | 25.0% |
| !! | TGAAAAATCGTGTATTTCTA+AGG | + | chr5_3:56053659-56053678 | None:intergenic | 25.0% |
| ! | GTATAATGTAGATGAAATCA+AGG | - | chr5_3:56053817-56053836 | Msa0819560:intron | 25.0% |
| !! | GAACTTGATGATTAGTTATA+AGG | - | chr5_3:56053931-56053950 | Msa0819560:intron | 25.0% |
| ! | TTATTGGACAATTCTCTATT+CGG | + | chr5_3:56054168-56054187 | None:intergenic | 25.0% |
| ! | TAGAGAATTGTCCAATAATT+AGG | - | chr5_3:56054170-56054189 | Msa0819560:intron | 25.0% |
| ! | AGAGAATTGTCCAATAATTA+GGG | - | chr5_3:56054171-56054190 | Msa0819560:intron | 25.0% |
| ! | TACTTCTAAATCTCTCTTAA+TGG | + | chr5_3:56054451-56054470 | None:intergenic | 25.0% |
| ! | AAAACAAATCCAGAACAATT+TGG | + | chr5_3:56054872-56054891 | None:intergenic | 25.0% |
| !!! | AAATTGTTCTGGATTTGTTT+TGG | - | chr5_3:56054871-56054890 | Msa0819560:intron | 25.0% |
| !! | GTTCTTTCTTTTATGTAATG+AGG | - | chr5_3:56054893-56054912 | Msa0819560:intron | 25.0% |
| ! | ATGTAGGCAAATAAACTAAA+AGG | - | chr5_3:56054944-56054963 | Msa0819560:intron | 25.0% |
| ! | TGTAGGCAAATAAACTAAAA+GGG | - | chr5_3:56054945-56054964 | Msa0819560:intron | 25.0% |
| ! | ATCATATGGAGAAAAGAATT+TGG | + | chr5_3:56054993-56055012 | None:intergenic | 25.0% |
| !! | TTCTTTTCTCCATATGATAA+TGG | - | chr5_3:56054995-56055014 | Msa0819560:intron | 25.0% |
| ! | ATTTATATGTCCAAGTATAC+AGG | + | chr5_3:56055194-56055213 | None:intergenic | 25.0% |
| TAAGAATAATGCAGCGATTA+AGG | - | chr5_3:56050781-56050800 | Msa0819560:three_prime_UTR | 30.0% | |
| TTTGCGTTTAATGTTAGCAA+CGG | + | chr5_3:56050838-56050857 | None:intergenic | 30.0% | |
| ! | AGATACTTTTCATTCCACTA+AGG | - | chr5_3:56050884-56050903 | Msa0819560:three_prime_UTR | 30.0% |
| TCATCTGATTCTGTTATTAC+AGG | - | chr5_3:56050954-56050973 | Msa0819560:three_prime_UTR | 30.0% | |
| ! | TTGAAAGTGCATACAAAGTT+CGG | + | chr5_3:56051164-56051183 | None:intergenic | 30.0% |
| GGGATATAATTGATATTGAG+TGG | - | chr5_3:56051279-56051298 | Msa0819560:intron | 30.0% | |
| TTTGTAGAATGCTCTCAAAT+AGG | + | chr5_3:56051394-56051413 | None:intergenic | 30.0% | |
| !! | TATTTGAGAGCATTCTACAA+AGG | - | chr5_3:56051393-56051412 | Msa0819560:intron | 30.0% |
| ! | CAAGCTTATTTGATAGTTAG+TGG | - | chr5_3:56051616-56051635 | Msa0819560:intron | 30.0% |
| ! | TTTGATGACAAGTTATCAGA+AGG | - | chr5_3:56051890-56051909 | Msa0819560:intron | 30.0% |
| GTTCAACATAATTCAAAGTC+AGG | - | chr5_3:56051918-56051937 | Msa0819560:intron | 30.0% | |
| ! | TTTTGCCTATTCACATAACT+CGG | - | chr5_3:56051946-56051965 | Msa0819560:intron | 30.0% |
| !!! | AAATTTTAGGGTATTCGTTG+CGG | - | chr5_3:56052065-56052084 | Msa0819560:intron | 30.0% |
| ! | GATATATACAGCTTGTTCAA+TGG | + | chr5_3:56052128-56052147 | None:intergenic | 30.0% |
| TTAATCATAGGAAACACTCA+AGG | + | chr5_3:56052364-56052383 | None:intergenic | 30.0% | |
| TACCATGTTAAAATCACAAC+AGG | + | chr5_3:56052605-56052624 | None:intergenic | 30.0% | |
| TATAGTTGAAAGTTCTACCT+TGG | - | chr5_3:56052987-56053006 | Msa0819560:intron | 30.0% | |
| ATAGTTGAAAGTTCTACCTT+GGG | - | chr5_3:56052988-56053007 | Msa0819560:intron | 30.0% | |
| ! | AATCTTTTATCTCGCAGTTT+AGG | - | chr5_3:56053048-56053067 | Msa0819560:intron | 30.0% |
| !! | CAGTTTAGGTGGATTAAATT+AGG | - | chr5_3:56053062-56053081 | Msa0819560:intron | 30.0% |
| AGGTAATTGTATGTGAACTT+TGG | + | chr5_3:56053118-56053137 | None:intergenic | 30.0% | |
| ! | TTAGTCTCTCTATAATTTGC+AGG | + | chr5_3:56053138-56053157 | None:intergenic | 30.0% |
| !!! | TAAGTCATACTGTGTTGTTT+TGG | - | chr5_3:56053163-56053182 | Msa0819560:intron | 30.0% |
| TCGATAAAAAAAACATGCGT+AGG | + | chr5_3:56053306-56053325 | None:intergenic | 30.0% | |
| ! | GCACTCAAAAGTATGTATTA+AGG | - | chr5_3:56053411-56053430 | Msa0819560:intron | 30.0% |
| CAGTGCATACTTATAGTTAT+GGG | + | chr5_3:56053470-56053489 | None:intergenic | 30.0% | |
| TCAGTGCATACTTATAGTTA+TGG | + | chr5_3:56053471-56053490 | None:intergenic | 30.0% | |
| AAAAAATGAATGGAAGGTTC+AGG | - | chr5_3:56053619-56053638 | Msa0819560:intron | 30.0% | |
| ! | TACTTGAAAGTATGTGACTT+CGG | + | chr5_3:56053777-56053796 | None:intergenic | 30.0% |
| !! | ACAGTCTTTAGGATGAAAAT+TGG | - | chr5_3:56054047-56054066 | Msa0819560:intron | 30.0% |
| !! | CAGTCTTTAGGATGAAAATT+GGG | - | chr5_3:56054048-56054067 | Msa0819560:intron | 30.0% |
| GAGAATTGTCCAATAATTAG+GGG | - | chr5_3:56054172-56054191 | Msa0819560:intron | 30.0% | |
| CTAAATCTCTCTTAATGGTT+TGG | + | chr5_3:56054446-56054465 | None:intergenic | 30.0% | |
| AAGGTTCACAACTGAAATTT+AGG | + | chr5_3:56054725-56054744 | None:intergenic | 30.0% | |
| GTAAATTCAATCACATCACA+AGG | + | chr5_3:56054744-56054763 | None:intergenic | 30.0% | |
| GAGAAGAACACAAAAATCAA+GGG | + | chr5_3:56054800-56054819 | None:intergenic | 30.0% | |
| TGAGAAGAACACAAAAATCA+AGG | + | chr5_3:56054801-56054820 | None:intergenic | 30.0% | |
| TAATTATCTTCAGCTATGAC+TGG | + | chr5_3:56054846-56054865 | None:intergenic | 30.0% | |
| TAATTACTGCCAAATTGTTC+TGG | - | chr5_3:56054860-56054879 | Msa0819560:intron | 30.0% | |
| AATGAGGAAATGTATTCACA+AGG | - | chr5_3:56054909-56054928 | Msa0819560:intron | 30.0% | |
| GTGGACAACATAAATAATCA+AGG | - | chr5_3:56055043-56055062 | Msa0819560:intron | 30.0% | |
| ! | AAGGCTGTGAAGATTTATTT+TGG | - | chr5_3:56055062-56055081 | Msa0819560:intron | 30.0% |
| TACAGGAAACAGAAAAGAAA+CGG | + | chr5_3:56055177-56055196 | None:intergenic | 30.0% | |
| ! | TTTTCTGTTTCCTGTATACT+TGG | - | chr5_3:56055181-56055200 | Msa0819560:intron | 30.0% |
| TAATAGTCATGCTTCTGAAT+TGG | - | chr5_3:56055215-56055234 | Msa0819560:intron | 30.0% | |
| CAAAATGCATAATCAGTAGA+AGG | - | chr5_3:56055283-56055302 | Msa0819560:intron | 30.0% | |
| ATGTGACTCTAATATCTAGT+TGG | + | chr5_3:56055336-56055355 | None:intergenic | 30.0% | |
| TTGGCAAGTTAAAACCTAAA+GGG | - | chr5_3:56055581-56055600 | Msa0819560:intron | 30.0% | |
| ! | AACATCTGAAACGACAATAA+AGG | - | chr5_3:56055687-56055706 | Msa0819560:CDS | 30.0% |
| TTGTCTAATCAGATAAACTG+AGG | - | chr5_3:56055766-56055785 | Msa0819560:intron | 30.0% | |
| TATAATACCAGTGCAAAATC+TGG | + | chr5_3:56055818-56055837 | None:intergenic | 30.0% | |
| ! | AAATGCACATACCTTACTTT+TGG | - | chr5_3:56055947-56055966 | Msa0819560:five_prime_UTR | 30.0% |
| ATAGTAATTATGTGTTCCTG+CGG | - | chr5_3:56056039-56056058 | Msa0819560:five_prime_UTR | 30.0% | |
| !!! | GAAGCAGTTTTGAATGTTTC+AGG | - | chr5_3:56050668-56050687 | Msa0819560:three_prime_UTR | 35.0% |
| AGTAGGACATTTACACCAAT+AGG | - | chr5_3:56051108-56051127 | Msa0819560:CDS | 35.0% | |
| CTTTGTATGCACTTTCAAAC+AGG | - | chr5_3:56051166-56051185 | Msa0819560:CDS | 35.0% | |
| ! | AGTCATTCTGAAGGTATGTT+AGG | - | chr5_3:56051223-56051242 | Msa0819560:CDS | 35.0% |
| ! | GTCATTCTGAAGGTATGTTA+GGG | - | chr5_3:56051224-56051243 | Msa0819560:CDS | 35.0% |
| !! | GACCCTAATTTTGATGAAGT+CGG | - | chr5_3:56051756-56051775 | Msa0819560:intron | 35.0% |
| !! | ACCCTAATTTTGATGAAGTC+GGG | - | chr5_3:56051757-56051776 | Msa0819560:intron | 35.0% |
| TTTGCCTATTCACATAACTC+GGG | - | chr5_3:56051947-56051966 | Msa0819560:intron | 35.0% | |
| ! | ATACAGCTTGTTCAATGGAT+TGG | + | chr5_3:56052123-56052142 | None:intergenic | 35.0% |
| TGAAACAAACCCGATAAGTA+AGG | + | chr5_3:56052337-56052356 | None:intergenic | 35.0% | |
| ! | TTTTATAGCCAAATTGGCAG+TGG | - | chr5_3:56052389-56052408 | Msa0819560:intron | 35.0% |
| CAAATTAACCACTGCCAATT+TGG | + | chr5_3:56052400-56052419 | None:intergenic | 35.0% | |
| !! | TTGGCAGTGGTTAATTTGTT+AGG | - | chr5_3:56052402-56052421 | Msa0819560:intron | 35.0% |
| !! | TGGCAGTGGTTAATTTGTTA+GGG | - | chr5_3:56052403-56052422 | Msa0819560:intron | 35.0% |
| CGTGTTATATAGGACATTCA+AGG | + | chr5_3:56052460-56052479 | None:intergenic | 35.0% | |
| TGTCCTATATAACACGACTT+CGG | - | chr5_3:56052464-56052483 | Msa0819560:intron | 35.0% | |
| !! | TGCCTGTTGTGATTTTAACA+TGG | - | chr5_3:56052600-56052619 | Msa0819560:intron | 35.0% |
| ! | TGCTACAGTTTTCCATGTTT+CGG | + | chr5_3:56052757-56052776 | None:intergenic | 35.0% |
| TTACTTGGTCAAAGTTGGAA+AGG | - | chr5_3:56052832-56052851 | Msa0819560:intron | 35.0% | |
| ! | AAAGTTGGAAAGGATTTGGT+GGG | - | chr5_3:56052842-56052861 | Msa0819560:intron | 35.0% |
| !!! | CAGCATTTTTTATGGTAAGC+TGG | - | chr5_3:56052883-56052902 | Msa0819560:intron | 35.0% |
| TATTTCTCCATCAGTGTTTC+AGG | + | chr5_3:56053265-56053284 | None:intergenic | 35.0% | |
| ! | AAGACATATGATAGAGTACC+TGG | - | chr5_3:56053333-56053352 | Msa0819560:intron | 35.0% |
| AAGTATGTATTAAGGGGTCA+TGG | - | chr5_3:56053419-56053438 | Msa0819560:intron | 35.0% | |
| GAGTTGTGGGAAAAAATGAA+TGG | - | chr5_3:56053609-56053628 | Msa0819560:intron | 35.0% | |
| TGTGGGAAAAAATGAATGGA+AGG | - | chr5_3:56053613-56053632 | Msa0819560:intron | 35.0% | |
| ! | ACTTGAAAGTATGTGACTTC+GGG | + | chr5_3:56053776-56053795 | None:intergenic | 35.0% |
| ACTAGACATACAGTACTCTA+TGG | - | chr5_3:56053909-56053928 | Msa0819560:intron | 35.0% | |
| CTAAAGACTGTATTCCTAAC+TGG | + | chr5_3:56054038-56054057 | None:intergenic | 35.0% | |
| CAGTTAGGAATACAGTCTTT+AGG | - | chr5_3:56054036-56054055 | Msa0819560:intron | 35.0% | |
| TAGCTGATATGGACAATATG+TGG | - | chr5_3:56054107-56054126 | Msa0819560:intron | 35.0% | |
| ATATGGACAATATGTGGAAG+AGG | - | chr5_3:56054113-56054132 | Msa0819560:intron | 35.0% | |
| ! | TCATATAAGCTCTGGTAAGA+AGG | - | chr5_3:56054137-56054156 | Msa0819560:intron | 35.0% |
| ! | CATATAAGCTCTGGTAAGAA+GGG | - | chr5_3:56054138-56054157 | Msa0819560:intron | 35.0% |
| AGGGAAAAGACAAACAATTG+AGG | + | chr5_3:56054226-56054245 | None:intergenic | 35.0% | |
| CTAACTTGAATAAGGCTGAA+GGG | + | chr5_3:56054245-56054264 | None:intergenic | 35.0% | |
| AGCAGAAGCTAACTTGAATA+AGG | + | chr5_3:56054253-56054272 | None:intergenic | 35.0% | |
| AACCAAACAAGTGTTTAGCA+AGG | + | chr5_3:56054588-56054607 | None:intergenic | 35.0% | |
| ! | TTTTTCATTTCCTCAGTGAG+TGG | + | chr5_3:56054628-56054647 | None:intergenic | 35.0% |
| TTCAGGACACCATTATCATA+TGG | + | chr5_3:56055007-56055026 | None:intergenic | 35.0% | |
| CGAGGATCAAATTTATGTTC+AGG | + | chr5_3:56055024-56055043 | None:intergenic | 35.0% | |
| GAACATAAATTTGATCCTCG+TGG | - | chr5_3:56055024-56055043 | Msa0819560:intron | 35.0% | |
| GATTATTTATGTTGTCCACG+AGG | + | chr5_3:56055042-56055061 | None:intergenic | 35.0% | |
| TAATATAGAAGGACTGTGAG+TGG | - | chr5_3:56055097-56055116 | Msa0819560:intron | 35.0% | |
| AATATAGAAGGACTGTGAGT+GGG | - | chr5_3:56055098-56055117 | Msa0819560:intron | 35.0% | |
| CTGAATTGGAAATACAGAAC+TGG | - | chr5_3:56055229-56055248 | Msa0819560:intron | 35.0% | |
| AACTCAATACTCTCAACACA+GGG | + | chr5_3:56055378-56055397 | None:intergenic | 35.0% | |
| AAACTCAATACTCTCAACAC+AGG | + | chr5_3:56055379-56055398 | None:intergenic | 35.0% | |
| !!! | GTGTTGAGAGTATTGAGTTT+TGG | - | chr5_3:56055379-56055398 | Msa0819560:intron | 35.0% |
| !! | TATGAAGATATGGATTGGGA+TGG | - | chr5_3:56055470-56055489 | Msa0819560:intron | 35.0% |
| ACACAACCAAGAAGTTCAAA+AGG | - | chr5_3:56055509-56055528 | Msa0819560:intron | 35.0% | |
| CACAACCAAGAAGTTCAAAA+GGG | - | chr5_3:56055510-56055529 | Msa0819560:intron | 35.0% | |
| GACAGATTAAACCTAGAAGA+TGG | - | chr5_3:56055551-56055570 | Msa0819560:intron | 35.0% | |
| CTTGGCAAGTTAAAACCTAA+AGG | - | chr5_3:56055580-56055599 | Msa0819560:intron | 35.0% | |
| CTTGGGAACATAAAACCTAA+AGG | - | chr5_3:56055613-56055632 | Msa0819560:intron | 35.0% | |
| GGAACATAAAACCTAAAGGA+TGG | - | chr5_3:56055617-56055636 | Msa0819560:intron | 35.0% | |
| AACTTGAATTGCCATCCTTT+AGG | + | chr5_3:56055631-56055650 | None:intergenic | 35.0% | |
| GTGCAAAATCTGGCTATAAT+TGG | + | chr5_3:56055808-56055827 | None:intergenic | 35.0% | |
| ! | ATTATAGCCAGATTTTGCAC+TGG | - | chr5_3:56055808-56055827 | Msa0819560:intron | 35.0% |
| GATGAAGAACATGAAGCTAA+GGG | + | chr5_3:56055864-56055883 | None:intergenic | 35.0% | |
| CTTGTCAAACACCAAAAGTA+AGG | + | chr5_3:56055961-56055980 | None:intergenic | 35.0% | |
| AGCAACGGAGAATGAATTTG+AGG | + | chr5_3:56050823-56050842 | None:intergenic | 40.0% | |
| TGATGAGAGAGAGAAGAAGA+AGG | + | chr5_3:56050922-56050941 | None:intergenic | 40.0% | |
| TCCTACTCCTACAATTTCAG+GGG | + | chr5_3:56051095-56051114 | None:intergenic | 40.0% | |
| GTCCTACTCCTACAATTTCA+GGG | + | chr5_3:56051096-56051115 | None:intergenic | 40.0% | |
| TGTCCTACTCCTACAATTTC+AGG | + | chr5_3:56051097-56051116 | None:intergenic | 40.0% | |
| AAGTTCGGCAAACAATGTTG+TGG | + | chr5_3:56051149-56051168 | None:intergenic | 40.0% | |
| TAGAATGCTCTCAAATAGGC+AGG | + | chr5_3:56051390-56051409 | None:intergenic | 40.0% | |
| TACAAAGGCCGTAGATACAA+GGG | - | chr5_3:56051408-56051427 | Msa0819560:intron | 40.0% | |
| CAAACAGACCCTTGTATCTA+CGG | + | chr5_3:56051419-56051438 | None:intergenic | 40.0% | |
| ATACAAGGGTCTGTTTGGAT+TGG | - | chr5_3:56051422-56051441 | Msa0819560:intron | 40.0% | |
| TTTGTAGGACACTCTCAAAC+AGG | + | chr5_3:56051718-56051737 | None:intergenic | 40.0% | |
| !! | TGTTTGAGAGTGTCCTACAA+AGG | - | chr5_3:56051717-56051736 | Msa0819560:intron | 40.0% |
| GCCCGACTTCATCAAAATTA+GGG | + | chr5_3:56051761-56051780 | None:intergenic | 40.0% | |
| TGCCCGACTTCATCAAAATT+AGG | + | chr5_3:56051762-56051781 | None:intergenic | 40.0% | |
| ACAGCAAGGGATATACTTCA+GGG | - | chr5_3:56051818-56051837 | Msa0819560:intron | 40.0% | |
| TACACCCGAGTTATGTGAAT+AGG | + | chr5_3:56051954-56051973 | None:intergenic | 40.0% | |
| CATAACTCGGGTGTAAATGT+CGG | - | chr5_3:56051959-56051978 | Msa0819560:intron | 40.0% | |
| ATCCATCCCCTGAAATTACA+GGG | + | chr5_3:56051987-56052006 | None:intergenic | 40.0% | |
| AATCCATCCCCTGAAATTAC+AGG | + | chr5_3:56051988-56052007 | None:intergenic | 40.0% | |
| TGTAATTTCAGGGGATGGAT+TGG | - | chr5_3:56051987-56052006 | Msa0819560:intron | 40.0% | |
| AAAGATATTGTTGGTCGTCC+TGG | - | chr5_3:56052270-56052289 | Msa0819560:intron | 40.0% | |
| AACAAACCCGATAAGTAAGG+TGG | + | chr5_3:56052334-56052353 | None:intergenic | 40.0% | |
| !! | GGCAGTGGTTAATTTGTTAG+GGG | - | chr5_3:56052404-56052423 | Msa0819560:intron | 40.0% |
| !! | GCAGTGGTTAATTTGTTAGG+GGG | - | chr5_3:56052405-56052424 | Msa0819560:intron | 40.0% |
| !! | TGGTTAATTTGTTAGGGGGA+GGG | - | chr5_3:56052409-56052428 | Msa0819560:intron | 40.0% |
| ACACCGAAGTCGTGTTATAT+AGG | + | chr5_3:56052470-56052489 | None:intergenic | 40.0% | |
| GGTCAAAGTTGGAAAGGATT+TGG | - | chr5_3:56052838-56052857 | Msa0819560:intron | 40.0% | |
| CAAAGTTGGAAAGGATTTGG+TGG | - | chr5_3:56052841-56052860 | Msa0819560:intron | 40.0% | |
| TCAAGTAAATGAGTAGCCCA+AGG | + | chr5_3:56053007-56053026 | None:intergenic | 40.0% | |
| ! | CTTTTATCTCGCAGTTTAGG+TGG | - | chr5_3:56053051-56053070 | Msa0819560:intron | 40.0% |
| ! | ATTTTTGTGATGTGGAGACC+TGG | + | chr5_3:56053215-56053234 | None:intergenic | 40.0% |
| CACTGATGGAGAAATATCAG+TGG | - | chr5_3:56053269-56053288 | Msa0819560:intron | 40.0% | |
| AGTACCTGGAGATATGTTGT+GGG | - | chr5_3:56053347-56053366 | Msa0819560:intron | 40.0% | |
| TTGCAAATGATTGGGAGTTG+TGG | - | chr5_3:56053595-56053614 | Msa0819560:intron | 40.0% | |
| TGCAAATGATTGGGAGTTGT+GGG | - | chr5_3:56053596-56053615 | Msa0819560:intron | 40.0% | |
| GTGGACAAAGAAGACAAGAT+AGG | - | chr5_3:56054007-56054026 | Msa0819560:intron | 40.0% | |
| !! | CAAGATAGGATTAGCCAGTT+AGG | - | chr5_3:56054021-56054040 | Msa0819560:intron | 40.0% |
| GAATCTCGACTTAGCTGATA+TGG | - | chr5_3:56054096-56054115 | Msa0819560:intron | 40.0% | |
| GCTAACTTGAATAAGGCTGA+AGG | + | chr5_3:56054246-56054265 | None:intergenic | 40.0% | |
| !! | AGAGTTTGTTGTGCTTCTTG+TGG | - | chr5_3:56054279-56054298 | Msa0819560:intron | 40.0% |
| ! | TTACCCATTGTTGGTTGGTA+AGG | - | chr5_3:56054384-56054403 | Msa0819560:CDS | 40.0% |
| ! | GGTCTTTCGTTCTAAATCTC+AGG | + | chr5_3:56054425-56054444 | None:intergenic | 40.0% |
| GTCAAACCACTAGCATGATA+AGG | - | chr5_3:56054511-56054530 | Msa0819560:intron | 40.0% | |
| ACCACTAGCATGATAAGGTT+TGG | - | chr5_3:56054516-56054535 | Msa0819560:intron | 40.0% | |
| ACCAAACCTTATCATGCTAG+TGG | + | chr5_3:56054520-56054539 | None:intergenic | 40.0% | |
| TGCCTTGCTAAACACTTGTT+TGG | - | chr5_3:56054583-56054602 | Msa0819560:intron | 40.0% | |
| ! | GCTGGGTCGATTTCAAATTT+AGG | + | chr5_3:56054824-56054843 | None:intergenic | 40.0% |
| TATTCACAAGGTAACACTGC+AGG | - | chr5_3:56054921-56054940 | Msa0819560:intron | 40.0% | |
| GCAAGTTAAAACCTAAAGGG+TGG | - | chr5_3:56055584-56055603 | Msa0819560:intron | 40.0% | |
| !! | GGTTTTATGTTCCCAAGCAT+TGG | + | chr5_3:56055610-56055629 | None:intergenic | 40.0% |
| ! | GATGTTTTCACTGCAGTATC+CGG | + | chr5_3:56055673-56055692 | None:intergenic | 40.0% |
| GGATGAAGAACATGAAGCTA+AGG | + | chr5_3:56055865-56055884 | None:intergenic | 40.0% | |
| CTTAGACACTCTTCACATGA+AGG | + | chr5_3:56055886-56055905 | None:intergenic | 40.0% | |
| ATATAACTTGGTCATTCCGC+AGG | + | chr5_3:56056058-56056077 | None:intergenic | 40.0% | |
| ATATCCCTCTCTCCTCATAG+TGG | - | chr5_3:56050696-56050715 | Msa0819560:three_prime_UTR | 45.0% | |
| TCATCCACTATGAGGAGAGA+GGG | + | chr5_3:56050703-56050722 | None:intergenic | 45.0% | |
| !! | TCCTCATAGTGGATGACTCA+AGG | - | chr5_3:56050707-56050726 | Msa0819560:three_prime_UTR | 45.0% |
| ACCTTGAGTCATCCACTATG+AGG | + | chr5_3:56050711-56050730 | None:intergenic | 45.0% | |
| TGAGAGAGAGAAGAAGAAGG+AGG | + | chr5_3:56050919-56050938 | None:intergenic | 45.0% | |
| !! | AAGACACCGCGTTGTTTTCA+CGG | - | chr5_3:56050987-56051006 | Msa0819560:CDS | 45.0% |
| TTCCAACCGTGAAAACAACG+CGG | + | chr5_3:56050996-56051015 | None:intergenic | 45.0% | |
| CAATTTCAGGGGGGGTAAAA+TGG | + | chr5_3:56051084-56051103 | None:intergenic | 45.0% | |
| TTTACCCCCCCTGAAATTGT+AGG | - | chr5_3:56051085-56051104 | Msa0819560:CDS | 45.0% | |
| TACTCCTACAATTTCAGGGG+GGG | + | chr5_3:56051092-56051111 | None:intergenic | 45.0% | |
| CTACTCCTACAATTTCAGGG+GGG | + | chr5_3:56051093-56051112 | None:intergenic | 45.0% | |
| CCTACTCCTACAATTTCAGG+GGG | + | chr5_3:56051094-56051113 | None:intergenic | 45.0% | |
| CTACAAAGGCCGTAGATACA+AGG | - | chr5_3:56051407-56051426 | Msa0819560:intron | 45.0% | |
| CGTAGATACAAGGGTCTGTT+TGG | - | chr5_3:56051417-56051436 | Msa0819560:intron | 45.0% | |
| TTTGATGAAGTCGGGCAACT+TGG | - | chr5_3:56051765-56051784 | Msa0819560:intron | 45.0% | |
| GACAGCAAGGGATATACTTC+AGG | - | chr5_3:56051817-56051836 | Msa0819560:intron | 45.0% | |
| TCCATCCCCTGAAATTACAG+GGG | + | chr5_3:56051986-56052005 | None:intergenic | 45.0% | |
| ATATTGTTGGTCGTCCTGGA+GGG | - | chr5_3:56052274-56052293 | Msa0819560:intron | 45.0% | |
| !! | GTGGTTAATTTGTTAGGGGG+AGG | - | chr5_3:56052408-56052427 | Msa0819560:intron | 45.0% |
| !! | GGTTAATTTGTTAGGGGGAG+GGG | - | chr5_3:56052410-56052429 | Msa0819560:intron | 45.0% |
| !! | GTTAATTTGTTAGGGGGAGG+GGG | - | chr5_3:56052411-56052430 | Msa0819560:intron | 45.0% |
| !! | TAACACGACTTCGGTGTCTT+AGG | - | chr5_3:56052473-56052492 | Msa0819560:intron | 45.0% |
| GGAGTAGCTCAGTGGTAATT+AGG | + | chr5_3:56052499-56052518 | None:intergenic | 45.0% | |
| ATTGTGCAGAGATTGAAGCC+AGG | - | chr5_3:56053194-56053213 | Msa0819560:intron | 45.0% | |
| GTACTTGCCTGAAACACTGA+TGG | - | chr5_3:56053255-56053274 | Msa0819560:intron | 45.0% | |
| GAGTACCTGGAGATATGTTG+TGG | - | chr5_3:56053346-56053365 | Msa0819560:intron | 45.0% | |
| GTTGTGGGAGGGTTTAGAAA+AGG | - | chr5_3:56053362-56053381 | Msa0819560:intron | 45.0% | |
| GAAGAGGCTCATATAAGCTC+TGG | - | chr5_3:56054129-56054148 | Msa0819560:intron | 45.0% | |
| GTCCAATAATTAGGGGTTGC+AGG | - | chr5_3:56054179-56054198 | Msa0819560:intron | 45.0% | |
| CTCCTGCAACCCCTAATTAT+TGG | + | chr5_3:56054184-56054203 | None:intergenic | 45.0% | |
| ! | ATGGGCGGTTTTGCTAGAAT+AGG | + | chr5_3:56054353-56054372 | None:intergenic | 45.0% |
| CAACCAACAATGGGTAACGA+TGG | + | chr5_3:56054381-56054400 | None:intergenic | 45.0% | |
| CATCGTTACCCATTGTTGGT+TGG | - | chr5_3:56054379-56054398 | Msa0819560:intron | 45.0% | |
| ACGCCTTACCAACCAACAAT+GGG | + | chr5_3:56054390-56054409 | None:intergenic | 45.0% | |
| TACGCCTTACCAACCAACAA+TGG | + | chr5_3:56054391-56054410 | None:intergenic | 45.0% | |
| ! | ATCTTCAGCTATGACTGGCT+GGG | + | chr5_3:56054841-56054860 | None:intergenic | 45.0% |
| TATCTTCAGCTATGACTGGC+TGG | + | chr5_3:56054842-56054861 | None:intergenic | 45.0% | |
| AAGGTAACACTGCAGGATGT+AGG | - | chr5_3:56054928-56054947 | Msa0819560:intron | 45.0% | |
| ACTGTGAGTGGGAGGAAAAT+GGG | - | chr5_3:56055109-56055128 | Msa0819560:intron | 45.0% | |
| ! | CTGCTCCCTTTTGAACTTCT+TGG | + | chr5_3:56055518-56055537 | None:intergenic | 45.0% |
| AGGGAGCAGATGAAATTGCT+AGG | - | chr5_3:56055529-56055548 | Msa0819560:intron | 45.0% | |
| CCAAGCATTTGCCATCTTCT+AGG | + | chr5_3:56055565-56055584 | None:intergenic | 45.0% | |
| CCTAGAAGATGGCAAATGCT+TGG | - | chr5_3:56055562-56055581 | Msa0819560:intron | 45.0% | |
| GCATCATCGACACATATTGC+TGG | - | chr5_3:56055712-56055731 | Msa0819560:CDS | 45.0% | |
| AGAACATGAAGCTAAGGGCA+AGG | + | chr5_3:56055859-56055878 | None:intergenic | 45.0% | |
| !!! | TATTTGATTTTTTATTTTTT+TGG | - | chr5_3:56052038-56052057 | Msa0819560:intron | 5.0% |
| GTCATCCACTATGAGGAGAG+AGG | + | chr5_3:56050704-56050723 | None:intergenic | 50.0% | |
| GGAGGAGCGAATTACCTTAG+TGG | + | chr5_3:56050901-56050920 | None:intergenic | 50.0% | |
| TCCGTCGCTACTGCTTTCAT+CGG | - | chr5_3:56051027-56051046 | Msa0819560:CDS | 50.0% | |
| ACCGATGAAAGCAGTAGCGA+CGG | + | chr5_3:56051031-56051050 | None:intergenic | 50.0% | |
| CCCCCTGAAATTGTAGGAGT+AGG | - | chr5_3:56051091-56051110 | Msa0819560:CDS | 50.0% | |
| !! | GAGAGTGTCCTACAAAGGCA+AGG | - | chr5_3:56051722-56051741 | Msa0819560:intron | 50.0% |
| CCACAAGTCCTTGCCTTTGT+AGG | + | chr5_3:56051733-56051752 | None:intergenic | 50.0% | |
| CCTACAAAGGCAAGGACTTG+TGG | - | chr5_3:56051730-56051749 | Msa0819560:intron | 50.0% | |
| TGTCGGACCCCTGTAATTTC+AGG | - | chr5_3:56051976-56051995 | Msa0819560:intron | 50.0% | |
| GTCGGACCCCTGTAATTTCA+GGG | - | chr5_3:56051977-56051996 | Msa0819560:intron | 50.0% | |
| TCGGACCCCTGTAATTTCAG+GGG | - | chr5_3:56051978-56051997 | Msa0819560:intron | 50.0% | |
| ACCCCTGTAATTTCAGGGGA+TGG | - | chr5_3:56051982-56052001 | Msa0819560:intron | 50.0% | |
| GATATTGTTGGTCGTCCTGG+AGG | - | chr5_3:56052273-56052292 | Msa0819560:intron | 50.0% | |
| TATTGTTGGTCGTCCTGGAG+GGG | - | chr5_3:56052275-56052294 | Msa0819560:intron | 50.0% | |
| GCCGGAACCACCTTACTTAT+CGG | - | chr5_3:56052324-56052343 | Msa0819560:intron | 50.0% | |
| CCCGATAAGTAAGGTGGTTC+CGG | + | chr5_3:56052328-56052347 | None:intergenic | 50.0% | |
| CCGGAACCACCTTACTTATC+GGG | - | chr5_3:56052325-56052344 | Msa0819560:intron | 50.0% | |
| AGGGGGATTCATTAGTCGGA+GGG | - | chr5_3:56052428-56052447 | Msa0819560:intron | 50.0% | |
| TCAATTGGCAGAGTCGCAGA+AGG | + | chr5_3:56052520-56052539 | None:intergenic | 50.0% | |
| ! | GAGAGTGACTTGCCGAAACA+TGG | - | chr5_3:56052742-56052761 | Msa0819560:intron | 50.0% |
| ACCTGGAGATATGTTGTGGG+AGG | - | chr5_3:56053350-56053369 | Msa0819560:intron | 50.0% | |
| CCTGGAGATATGTTGTGGGA+GGG | - | chr5_3:56053351-56053370 | Msa0819560:intron | 50.0% | |
| !! | TGGGTAACGATGGCTCTGAT+GGG | + | chr5_3:56054371-56054390 | None:intergenic | 50.0% |
| !! | ATGGGTAACGATGGCTCTGA+TGG | + | chr5_3:56054372-56054391 | None:intergenic | 50.0% |
| GAGCCATCGTTACCCATTGT+TGG | - | chr5_3:56054375-56054394 | Msa0819560:intron | 50.0% | |
| ATTTCCTCAGTGAGTGGCAG+TGG | + | chr5_3:56054622-56054641 | None:intergenic | 50.0% | |
| ATAGAAGGACTGTGAGTGGG+AGG | - | chr5_3:56055101-56055120 | Msa0819560:intron | 50.0% | |
| GACTGTGAGTGGGAGGAAAA+TGG | - | chr5_3:56055108-56055127 | Msa0819560:intron | 50.0% | |
| CTGTGAGTGGGAGGAAAATG+GGG | - | chr5_3:56055110-56055129 | Msa0819560:intron | 50.0% | |
| !! | AGATATGGATTGGGATGGCG+AGG | - | chr5_3:56055475-56055494 | Msa0819560:intron | 50.0% |
| CTAAAGGGTGGCCAATGCTT+GGG | - | chr5_3:56055596-56055615 | Msa0819560:intron | 50.0% | |
| !! | CCGGCACTTTGGTTCTTCTA+GGG | + | chr5_3:56055654-56055673 | None:intergenic | 50.0% |
| CCCTAGAAGAACCAAAGTGC+CGG | - | chr5_3:56055651-56055670 | Msa0819560:intron | 50.0% | |
| !! | TCCGGCACTTTGGTTCTTCT+AGG | + | chr5_3:56055655-56055674 | None:intergenic | 50.0% |
| !! | CACCGCGTTGTTTTCACGGT+TGG | - | chr5_3:56050991-56051010 | Msa0819560:CDS | 55.0% |
| AGCAGTAGCGACGGATGCAA+TGG | + | chr5_3:56051022-56051041 | None:intergenic | 55.0% | |
| AAGTAAGGTGGTTCCGGCAG+TGG | + | chr5_3:56052322-56052341 | None:intergenic | 55.0% | |
| GGGGAGGGGGATTCATTAGT+CGG | - | chr5_3:56052424-56052443 | Msa0819560:intron | 55.0% | |
| GAGGGGGATTCATTAGTCGG+AGG | - | chr5_3:56052427-56052446 | Msa0819560:intron | 55.0% | |
| TCGCAGAAGGAGTAGCTCAG+TGG | + | chr5_3:56052507-56052526 | None:intergenic | 55.0% | |
| CCCTCCCACAACATATCTCC+AGG | + | chr5_3:56053354-56053373 | None:intergenic | 55.0% | |
| !! | GTAACGATGGCTCTGATGGG+CGG | + | chr5_3:56054368-56054387 | None:intergenic | 55.0% |
| AGGAAAATGGGGCCTCGTGT+GGG | - | chr5_3:56055121-56055140 | Msa0819560:intron | 55.0% | |
| !! | TATGGATTGGGATGGCGAGG+TGG | - | chr5_3:56055478-56055497 | Msa0819560:intron | 55.0% |
| !! | CCAAGCATTGGCCACCCTTT+AGG | + | chr5_3:56055598-56055617 | None:intergenic | 55.0% |
| CCTAAAGGGTGGCCAATGCT+TGG | - | chr5_3:56055595-56055614 | Msa0819560:intron | 55.0% | |
| CACTGCAGTATCCGGCACTT+TGG | + | chr5_3:56055665-56055684 | None:intergenic | 55.0% | |
| GCAGGAATACTGACCCCTCC+AGG | + | chr5_3:56052291-56052310 | None:intergenic | 60.0% | |
| CCTCAGTGAGTGGCAGTGGT+TGG | + | chr5_3:56054618-56054637 | None:intergenic | 60.0% | |
| CCAACCACTGCCACTCACTG+AGG | - | chr5_3:56054615-56054634 | Msa0819560:CDS | 60.0% | |
| GAGGAAAATGGGGCCTCGTG+TGG | - | chr5_3:56055120-56055139 | Msa0819560:intron | 60.0% | |
| AAAATGGGGCCTCGTGTGGG+AGG | - | chr5_3:56055124-56055143 | Msa0819560:intron | 60.0% | |
| AAATGGGGCCTCGTGTGGGA+GGG | - | chr5_3:56055125-56055144 | Msa0819560:intron | 60.0% | |
| AGCTAAGGGCAAGGAGCAGC+AGG | + | chr5_3:56055850-56055869 | None:intergenic | 60.0% | |
| CCTGCTTGTGCAGCCACTGC+CGG | - | chr5_3:56052306-56052325 | Msa0819560:intron | 65.0% | |
| AATGGGGCCTCGTGTGGGAG+GGG | - | chr5_3:56055126-56055145 | Msa0819560:intron | 65.0% | |
| TGGGATGGCGAGGTGGAAGC+TGG | - | chr5_3:56055485-56055504 | Msa0819560:intron | 65.0% | |
| CCGGCAGTGGCTGCACAAGC+AGG | + | chr5_3:56052309-56052328 | None:intergenic | 70.0% | |
| ATGGGGCCTCGTGTGGGAGG+GGG | - | chr5_3:56055127-56055146 | Msa0819560:intron | 70.0% | |
| GACCTACCCCCTCCCACACG+AGG | + | chr5_3:56055136-56055155 | None:intergenic | 70.0% | |
| GGCCTCGTGTGGGAGGGGGT+AGG | - | chr5_3:56055131-56055150 | Msa0819560:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 56050633 | 56056097 | 56050633 | ID=Msa0819560;Name=Msa0819560 |
| chr5_3 | mRNA | 56050633 | 56056097 | 56050633 | ID=Msa0819560-mRNA-1;Parent=Msa0819560;Name=Msa0819560-mRNA-1;_AED=0.08;_eAED=0.08;_QI=156|1|1|1|1|1|5|350|212 |
| chr5_3 | exon | 56050633 | 56051253 | 56050633 | ID=Msa0819560-mRNA-1:exon:16950;Parent=Msa0819560-mRNA-1 |
| chr5_3 | exon | 56054384 | 56054496 | 56054384 | ID=Msa0819560-mRNA-1:exon:16949;Parent=Msa0819560-mRNA-1 |
| chr5_3 | exon | 56054592 | 56054656 | 56054592 | ID=Msa0819560-mRNA-1:exon:16948;Parent=Msa0819560-mRNA-1 |
| chr5_3 | exon | 56055682 | 56055754 | 56055682 | ID=Msa0819560-mRNA-1:exon:16947;Parent=Msa0819560-mRNA-1 |
| chr5_3 | exon | 56055825 | 56056097 | 56055825 | ID=Msa0819560-mRNA-1:exon:16946;Parent=Msa0819560-mRNA-1 |
| chr5_3 | five_prime_UTR | 56055942 | 56056097 | 56055942 | ID=Msa0819560-mRNA-1:five_prime_utr;Parent=Msa0819560-mRNA-1 |
| chr5_3 | CDS | 56055825 | 56055941 | 56055825 | ID=Msa0819560-mRNA-1:cds;Parent=Msa0819560-mRNA-1 |
| chr5_3 | CDS | 56055682 | 56055754 | 56055682 | ID=Msa0819560-mRNA-1:cds;Parent=Msa0819560-mRNA-1 |
| chr5_3 | CDS | 56054592 | 56054656 | 56054592 | ID=Msa0819560-mRNA-1:cds;Parent=Msa0819560-mRNA-1 |
| chr5_3 | CDS | 56054384 | 56054496 | 56054384 | ID=Msa0819560-mRNA-1:cds;Parent=Msa0819560-mRNA-1 |
| chr5_3 | CDS | 56050983 | 56051253 | 56050983 | ID=Msa0819560-mRNA-1:cds;Parent=Msa0819560-mRNA-1 |
| chr5_3 | three_prime_UTR | 56050633 | 56050982 | 56050633 | ID=Msa0819560-mRNA-1:three_prime_utr;Parent=Msa0819560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
