AlfalfaGEDB | Msa0135420

M. sativa cultivar zhongmu-4 / Msa0135420

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363
PFAM: PF12854.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0135420	KEH41012.1	92.655	708	47	2	81	783	6	713	0.0	1368

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0135420	sp\|Q680H3\|PP170_ARATH	49.190	494	234	3	292	783	137	615	4.24e-160	481

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0135420	A0A072VGT3	92.655	708	47	2	81	783	6	713	0.0	1368

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0008220	Msa0135420	0.828868	7.077535e-55	-8.615850e-47
Msa0015120	Msa0135420	0.833639	4.752311e-56	-8.615850e-47
Msa0020930	Msa0135420	0.802702	4.949356e-49	-8.615850e-47
Msa0027390	Msa0135420	0.827301	1.687331e-54	-8.615850e-47
Msa0031180	Msa0135420	0.824258	8.900034e-54	-8.615850e-47
Msa0031820	Msa0135420	0.816668	4.911296e-52	-8.615850e-47
Msa0032320	Msa0135420	0.830659	2.592359e-55	-8.615850e-47
Msa0037160	Msa0135420	0.815258	1.013532e-51	-8.615850e-47
Msa0038000	Msa0135420	0.800152	1.647827e-48	-8.615850e-47
Msa0039250	Msa0135420	0.823731	1.182677e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0135420	MtrunA17_Chr5g0418021	91.392	395	30	1	393	783	208	602	0.0	745
Msa0135420	MtrunA17_Chr5g0418021	88.274	307	33	2	87	392	1	305	0.0	561
Msa0135420	MtrunA17_Chr1g0166031	93.838	357	18	1	431	783	1	357	0.0	700
Msa0135420	MtrunA17_Chr1g0166031	74.545	55	13	1	332	385	1	55	2.56e-17	84.3
Msa0135420	MtrunA17_Chr1g0166021	91.117	349	30	1	81	428	6	354	0.0	666
Msa0135420	MtrunA17_Chr1g0166021	72.000	100	26	1	393	490	219	318	3.83e-36	140
Msa0135420	MtrunA17_Chr2g0287621	71.503	386	100	2	402	783	77	456	0.0	562
Msa0135420	MtrunA17_Chr2g0287621	55.952	84	36	1	303	385	77	160	3.05e-22	100
Msa0135420	MtrunA17_Chr2g0287621	66.667	72	18	1	83	148	4	75	7.31e-21	96.7
Msa0135420	MtrunA17_Chr2g0287551	67.176	393	99	3	393	783	91	455	5.69e-180	523

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0135420	AT2G25580.2	49.190	494	234	3	292	783	137	615	4.31e-161	481
Msa0135420	AT2G25580.1	49.190	494	234	3	292	783	137	615	4.31e-161	481
Msa0135420	AT4G32450.1	51.662	391	186	2	393	783	150	537	6.75e-137	416
Msa0135420	AT4G32450.1	40.000	100	57	2	294	392	150	247	2.86e-13	73.6
Msa0135420	AT1G29710.1	45.780	391	209	1	393	783	88	475	2.32e-118	365
Msa0135420	AT2G34370.1	45.455	396	204	3	393	783	81	469	2.76e-108	339
Msa0135420	AT2G15690.1	38.875	391	219	5	393	783	209	579	3.05e-85	282
Msa0135420	AT4G21065.2	33.716	436	269	7	366	783	29	462	2.73e-82	271
Msa0135420	AT4G21065.2	28.221	163	112	3	463	625	27	184	7.83e-13	72.0
Msa0135420	AT2G22070.1	40.960	354	195	3	444	783	433	786	5.34e-82	278

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Find 156 sgRNAs with CRISPR-Local

Find 592 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGGCTATGCTCCTGC+AGG	0.490065	1_3:-67044612	Msa0135420:CDS
AAACAACGATCCAAATCCAC+AGG	0.611637	1_3:+67045669	None:intergenic
AAAGGCTGAGTTTCTTGAAG+AGG	0.590362	1_3:-67045922	Msa0135420:CDS
AAATGGGCTATGCTCCTGCA+GGG	0.683989	1_3:-67044611	Msa0135420:CDS
AAATGTGAAGAAGCTGAATT+AGG	0.325531	1_3:-67052225	Msa0135420:intron
AAGAGAATTAACAGTAACTA+AGG	0.466113	1_3:+67046649	None:intergenic
AAGATTATTTCTGATCTTGT+GGG	0.464953	1_3:-67044679	Msa0135420:CDS
AATATACCAATATGCTAGCT+AGG	0.498706	1_3:+67042397	None:intergenic
AATGCAACATAAAGTTGGGG+TGG	0.580999	1_3:-67046294	Msa0135420:CDS
AATGTCATAGTCCCTACTCA+TGG	0.560874	1_3:+67045281	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAACAAACATACGAAGTTA+TGG	-	chr1_3:67042385-67042404	Msa0135420:three_prime_UTR	30.0%
AAATGTGAAGAAGCTGAATT+AGG	-	chr1_3:67042497-67042516	Msa0135420:three_prime_UTR	30.0%
AGAAGAAATTTACCTTTGAG+TGG	+	chr1_3:67042784-67042803	None:intergenic	30.0%
CTCTACAAATTTAATCAGCT+AGG	+	chr1_3:67043082-67043101	None:intergenic	30.0%
TAAACGTACATAAGAACGAT+TGG	-	chr1_3:67043459-67043478	Msa0135420:intron	30.0%
GAAAGTAAAAATGTCATCAC+TGG	+	chr1_3:67043538-67043557	None:intergenic	30.0%
GATCAAATCTCTCTCTTAAA+TGG	-	chr1_3:67043597-67043616	Msa0135420:intron	30.0%
AAGCATCAAACGAATGAAAT+TGG	+	chr1_3:67043629-67043648	None:intergenic	30.0%
CATTTATCTCAAGTTAGAGA+GGG	+	chr1_3:67044335-67044354	None:intergenic	30.0%
ATTTGTGCTTCAAAGAGAAT+GGG	-	chr1_3:67044383-67044402	Msa0135420:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	67042278	67052466	67042278	ID=Msa0135420;Name=Msa0135420
chr1_3	mRNA	67042278	67052466	67042278	ID=Msa0135420-mRNA-1;Parent=Msa0135420;Name=Msa0135420-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0\|0.5\|0.66\|0.66\|0.5\|0.33\|3\|371\|783
chr1_3	exon	67042278	67042636	67042278	ID=Msa0135420-mRNA-1:exon:22968;Parent=Msa0135420-mRNA-1
chr1_3	exon	67044588	67046710	67044588	ID=Msa0135420-mRNA-1:exon:22967;Parent=Msa0135420-mRNA-1
chr1_3	exon	67052226	67052466	67052226	ID=Msa0135420-mRNA-1:exon:22966;Parent=Msa0135420-mRNA-1
chr1_3	CDS	67052226	67052466	67052226	ID=Msa0135420-mRNA-1:cds;Parent=Msa0135420-mRNA-1
chr1_3	CDS	67044600	67046710	67044600	ID=Msa0135420-mRNA-1:cds;Parent=Msa0135420-mRNA-1
chr1_3	three_prime_UTR	67044588	67044599	67044588	ID=Msa0135420-mRNA-1:three_prime_utr;Parent=Msa0135420-mRNA-1
chr1_3	three_prime_UTR	67042278	67042636	67042278	ID=Msa0135420-mRNA-1:three_prime_utr;Parent=Msa0135420-mRNA-1

Gene Sequence

>Msa0135420

ATGAATTTCTTAGATTTCTTAGATTTACATAGTAATGCTCCAAATAACCAGGGAACGAAGGCAAGTTTAATATGTTCCAAAGAAAATGAAGAATCTAATCCTTATGCTCAACAAACATACGAAGTTATGGCAAACACAGAGATGGAAACTTCTTTATCGTCTAATCTTCATCCACATAGCTACCATGTTCATTCGCAAACTAACGGTGCTCAAGCAACAAAATGTGAAGAAGCTGAATTAGATTATTCCAAGTTTCTAATGATGTCTTCTAAGAAAGCTTCCTTAGTTACTGTTAATTCTCTTATGAGATTGTGCAATCGATGTTGTTCTCACCACGTTGCAAATTGTATCAAAGGGTCTAATACATCAAAGAATATTTCCACCGCTGCTGAAAGGTGGGATTATCAAGCTAATGATTCTTCGGATTACCAGCAAAATCGTCCTAGGTTTCATCAGCAAAATGCAAATGGATACTTTCCGAATAATCATGCTAGTTCAGAGCGAATTTATTATGGATCTGGTCAAACTGCACGTGGAGGACATGTAAATAATAATGTCACCCAGAATGTAGTTCAAAGTAATTTGGCAGAGCATAATGGAAGTGTCAATGGGGACTTTGGTCAAAGAAACTTCAAAATGCAACATAAAGTTGGGGTGGGTGTTGATAATTCAAGGGGCTTTGGGATGCATCCTTATGGTTCTTTTGAGAGACATGATTGGAGACTAGAATCCGGAGAAACGATGAAGTATCCCAATTCACATAGTTTACTTAGGCCTATAGAGTATCAGGGACATCATGGGAACCTTACTCAAAACAGTGGTCGTTGTCAGCAGACTCCAAATATGAATACTCAAAACTCTGCTCCATATAAAGATAAACTTAACAAACTAGATGAATTTTGCAAGGAGGGTGAAGTGAAGAAAGCAATTGCTGTTTTGCAAGAGTTAGAAAAGCTTCATGCTTATGTGGATTTGTATTTTTGTTTGCGATTAATACAACTGTGTGGAAAGGCTGAGTTTCTTGAAGAGGCAAAAGTTGTACACAGATATGTTTTACAACATTTGTCACCTCTCACAGTTCGCACGTGCGTTAGAATATTAGAGATGTATTTTCAATGTGGTTCTGTAGATGTAGTCAACGTGTTCAGGAACATGAACATGACTGAGCGCAAATTGATTGAGGAACTTGATAGTTCTTGCATGGAGGGTGAAGTGAAGGAAGCAATTGTTGTTTTGCAAGTGTTAGAAAGGTTTCATATTCCTGTGGATTTGGATCGTTGTTTGCGATTAATGCAACAATGTGGGAAGGTTGAGTCTCTTGAAGAGTTAAAAGTTGTACACAGATATGTTTTACAACATTTGTCACCTCTTAAAGTCAGCACATGCAATGGAATATTGGAGATGTATTTTCAATGTGGTTCTGTAGATGCTGCAGTAAACGTGTTCAAGAACATGACTGAGCGCGATTTGACTACTATATATATTATGATAAAGCAGCTCGCCAAGAATGGGTTTGCAGAAGATTCAATTGATTTATTTACTGAATTTAAAAGGAGTGGACTAAAACCTGATGGCCAAATGTTTATTGGGGTTTTTGGTGCATGTAGTATGCTGGGAGATATTGTTGAGGGAATGCTACACTTTGAATCCATGAGTAGGGACTATGACATTGTACCAACTATGGCACATTATGTAAGTTTAGTAGACATGATTGGTAGTATTGGGAATCTTGATGAAGCCTTGGAGTTCATTGAAAAGATGCCAATGGAACCAAGTGTAGAGGTATGGGAGACTTTGATGAATAGTTGTAGAGTTCATGGAAACACTGAGCTGGGGGATCGTTGTGCTGAACTGGTTGAGAAGTTGGATCCATCTCGTTTAAATGAGAAATCAAAAGTTGGTCTTTTACTCATAGAAACTTCAGACATAACAAAAAACAAAAAGCAGAACAAATCACCAGACAATAATCTTAGCCGTATCCATGAATATCGAGCAGGAGATACTTCACTTCCAGAAAATAACATGATCTATACTTTGCTTAGACGTTTGAGGGTGCACATGAAAGAAGCTGGCTATGTTGCAGAGACAAGATTTTGTTTACATGACGTAGATCAAGAAGATAAAGAAGATGCTCTCCTTGGCCACAGTGAGAGACTTGCTATTGCTAAGGGTCTCCTTAACAGTCCTGCTCGTAGTACCATCAGAGTAATTAAGAATCTCCGTGTTTGTGGTGATTGTCATACTGCATTGAAGATTATTTCTGATCTTGTGGGAAGAGAATTCATCATCCGAGATGCTAAAAGGTTCCATCATTTTAAAAATGGGCTATGCTCCTGCAGGGATTATTGGTGA

Protein sequence

>Msa0135420

MNFLDFLDLHSNAPNNQGTKASLICSKENEESNPYAQQTYEVMANTEMETSLSSNLHPHSYHVHSQTNGAQATKCEEAELDYSKFLMMSSKKASLVTVNSLMRLCNRCCSHHVANCIKGSNTSKNISTAAERWDYQANDSSDYQQNRPRFHQQNANGYFPNNHASSERIYYGSGQTARGGHVNNNVTQNVVQSNLAEHNGSVNGDFGQRNFKMQHKVGVGVDNSRGFGMHPYGSFERHDWRLESGETMKYPNSHSLLRPIEYQGHHGNLTQNSGRCQQTPNMNTQNSAPYKDKLNKLDEFCKEGEVKKAIAVLQELEKLHAYVDLYFCLRLIQLCGKAEFLEEAKVVHRYVLQHLSPLTVRTCVRILEMYFQCGSVDVVNVFRNMNMTERKLIEELDSSCMEGEVKEAIVVLQVLERFHIPVDLDRCLRLMQQCGKVESLEELKVVHRYVLQHLSPLKVSTCNGILEMYFQCGSVDAAVNVFKNMTERDLTTIYIMIKQLAKNGFAEDSIDLFTEFKRSGLKPDGQMFIGVFGACSMLGDIVEGMLHFESMSRDYDIVPTMAHYVSLVDMIGSIGNLDEALEFIEKMPMEPSVEVWETLMNSCRVHGNTELGDRCAELVEKLDPSRLNEKSKVGLLLIETSDITKNKKQNKSPDNNLSRIHEYRAGDTSLPENNMIYTLLRRLRVHMKEAGYVAETRFCLHDVDQEDKEDALLGHSERLAIAKGLLNSPARSTIRVIKNLRVCGDCHTALKIISDLVGREFIIRDAKRFHHFKNGLCSCRDYW*