AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0610500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610500 MtrunA17_Chr4g0043411 97.627 590 14 0 1 590 1 590 0.0 1188
Msa0610500 MtrunA17_Chr2g0311581 55.276 635 198 17 1 590 1 594 0.0 596
Msa0610500 MtrunA17_Chr7g0259201 51.692 532 117 8 31 553 1 401 1.46e-165 478
Msa0610500 MtrunA17_Chr7g0259191 49.455 459 125 10 149 590 3 371 2.33e-109 333
Msa0610500 MtrunA17_Chr1g0205721 49.721 179 90 0 35 213 141 319 1.67e-57 196
Msa0610500 MtrunA17_Chr5g0422971 33.600 250 156 6 30 277 5 246 2.69e-41 154
Msa0610500 MtrunA17_Chr5g0397381 32.800 250 158 6 30 277 5 246 4.18e-40 151
Msa0610500 MtrunA17_Chr7g0235101 26.522 230 152 4 44 273 24 236 4.08e-20 90.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610500 AT5G45190.1 55.354 607 187 14 1 582 1 548 0.0 594
Msa0610500 AT5G45190.2 53.883 618 190 15 1 582 1 559 0.0 577
Msa0610500 AT4G19600.1 55.143 593 179 13 1 586 1 513 0.0 570
Msa0610500 AT5G45190.3 51.004 498 159 14 111 582 1 439 5.69e-140 415
Msa0610500 AT4G19560.1 48.780 451 175 10 15 462 14 411 2.48e-116 354
Msa0610500 AT1G35440.1 50.607 247 113 2 34 278 7 246 8.55e-86 267
Msa0610500 AT1G27630.1 53.782 238 107 2 32 269 32 266 2.68e-85 268
Msa0610500 AT1G27630.4 53.712 229 103 2 32 260 32 257 9.28e-83 261
Msa0610500 AT4G19560.2 40.260 462 165 15 105 561 30 385 6.46e-69 228
Msa0610500 AT1G27630.6 49.457 184 90 2 86 269 1 181 4.77e-55 186
Msa0610500 AT1G27630.3 49.457 184 90 2 86 269 1 181 4.77e-55 186
Msa0610500 AT1G27630.5 49.457 184 90 2 86 269 1 181 4.77e-55 186
Msa0610500 AT1G27630.2 49.457 184 90 2 86 269 1 181 4.77e-55 186
Msa0610500 AT2G26430.1 33.200 250 157 6 30 277 5 246 9.18e-40 150
Msa0610500 AT2G26430.4 33.200 250 157 6 30 277 5 246 6.33e-37 139
Msa0610500 AT2G26430.3 31.313 198 127 5 82 277 1 191 1.78e-27 114
Msa0610500 AT2G26430.2 31.313 198 127 5 82 277 1 191 1.78e-27 114
Msa0610500 AT5G48630.1 26.009 223 148 4 51 273 31 236 1.44e-16 80.1
Msa0610500 AT5G48630.2 26.009 223 148 4 51 273 34 239 2.72e-16 79.7
Msa0610500 AT5G48640.1 25.854 205 135 3 68 272 48 235 1.36e-14 74.3
Msa0610500 AT5G48640.2 26.733 202 131 4 71 272 3 187 2.22e-14 72.8
Msa0610500 AT5G48640.5 23.626 182 122 2 91 272 3 167 1.20e-11 64.3
Msa0610500 AT5G48640.3 23.626 182 122 2 91 272 3 167 1.20e-11 64.3
Msa0610500 AT5G48640.4 23.626 182 122 2 91 272 3 167 1.20e-11 64.3

Find 173 sgRNAs with CRISPR-Local

Find 516 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCAATCTTGATTGCTTCTT+TGG 0.078252 4_2:+58250748 None:intergenic
CTGACGGAAGCTTCACTTTC+AGG 0.142810 4_2:+58251575 None:intergenic
AGCAACATTGAACTTCTTTA+TGG 0.142833 4_2:+58251809 None:intergenic
CTTCTGACATTTCTTAATTA+TGG 0.157184 4_2:-58250104 Msa0610500:three_prime_UTR
TCAAGACGTTTCTTCGTTTC+TGG 0.177305 4_2:+58250266 None:intergenic
TTCGTTTCTGGTTGACTTGC+TGG 0.211936 4_2:+58250278 None:intergenic
GGAACGGGATGCCTCAATTT+TGG 0.233829 4_2:-58250083 Msa0610500:three_prime_UTR
TTAATAGCTTATGCTTTCTT+TGG 0.244097 4_2:-58250052 Msa0610500:three_prime_UTR
TTTAGTAGTTTCACTTCTTT+AGG 0.246738 4_2:+58249890 None:intergenic
ACAAAGGAGGCTACAGAATT+AGG 0.256926 4_2:-58250857 Msa0610500:CDS
GCCACTTTAGCTGTAGTAAA+TGG 0.259714 4_2:-58249767 Msa0610500:three_prime_UTR
GATGGATTCAATGCAGAAAA+AGG 0.264458 4_2:-58250362 Msa0610500:CDS
GAGAATTTCATGCTGTTGTC+AGG 0.291019 4_2:-58250018 Msa0610500:three_prime_UTR
TGTACATTCTTACAAGATTT+AGG 0.291338 4_2:-58254934 Msa0610500:CDS
TAATAGCTTATGCTTTCTTT+GGG 0.291700 4_2:-58250051 Msa0610500:three_prime_UTR
CTTGCAATTCACGAGGCTTC+AGG 0.292854 4_2:-58256781 Msa0610500:five_prime_UTR
CTCTATCTCTATACTATTGT+TGG 0.299162 4_2:+58249826 None:intergenic
GCCTCGACAAGGGGCTTATA+TGG 0.299564 4_2:+58251831 None:intergenic
CAAGGCTTTACACATATCTA+AGG 0.302357 4_2:-58249803 Msa0610500:three_prime_UTR
CTGCACTCCCATCATTGCTT+TGG 0.304701 4_2:+58250996 None:intergenic
TCAATCTTGATTGCTTCTTT+GGG 0.317346 4_2:+58250749 None:intergenic
GGCTTCTCTTCTCTACCTTC+TGG 0.319081 4_2:-58256760 Msa0610500:intron
GAATCGATGACAAAATATTA+TGG 0.323728 4_2:+58254475 None:intergenic
GACAATAAAGAAAGATATAA+TGG 0.332960 4_2:-58250531 Msa0610500:CDS
GGGTTAGTTGCACTGTTGAC+TGG 0.342169 4_2:+58255151 None:intergenic
GAAGCAGAAGGGGCTGCTGC+AGG 0.353238 4_2:-58251148 Msa0610500:CDS
GTTTCGTCGTGTTCGGCAAT+TGG 0.356817 4_2:+58256803 None:intergenic
CCCGACAAAGATAAACTTGT+TGG 0.366292 4_2:-58250902 Msa0610500:CDS
ACTCAAAATGAATTAGAATA+GGG 0.371597 4_2:-58249941 Msa0610500:three_prime_UTR
GAACTTGGCAGCAAGGAAAA+TGG 0.372793 4_2:+58251597 None:intergenic
TTTATTTGCTTAATGTGATA+AGG 0.377884 4_2:-58250156 Msa0610500:three_prime_UTR
ACATTTCTTAATTATGGAAC+GGG 0.377979 4_2:-58250098 Msa0610500:three_prime_UTR
TTATCACATTAAGCAAATAA+AGG 0.378007 4_2:+58250158 None:intergenic
CAATGATGGGAGTGCAGAAA+TGG 0.380246 4_2:-58250990 Msa0610500:CDS
CTTCAATGTTGGTCAAAATC+TGG 0.381107 4_2:-58250801 Msa0610500:CDS
TCCAACAAGTTTATCTTTGT+CGG 0.386957 4_2:+58250901 None:intergenic
TTTATCCTCTGTGCAGCAGC+AGG 0.390517 4_2:+58253050 None:intergenic
CAGACACAAGTGCTGCCATA+TGG 0.396129 4_2:+58255130 None:intergenic
AAGAAACACTAGCAGATTAC+TGG 0.397858 4_2:+58249915 None:intergenic
TAATTCTGTAGCCTCCTTTG+TGG 0.398062 4_2:+58250859 None:intergenic
TATGATGTGGCTTAAATTGT+AGG 0.409195 4_2:+58251632 None:intergenic
GCTTCACTTCCTTGTGATTG+TGG 0.410396 4_2:+58251166 None:intergenic
TACTCAAAATGAATTAGAAT+AGG 0.411849 4_2:-58249942 Msa0610500:three_prime_UTR
TTCTGAGGTCTGAGAATCCC+TGG 0.414945 4_2:+58250931 None:intergenic
ATTGCAAGTTTCGTCGTGTT+CGG 0.419483 4_2:+58256796 None:intergenic
TGATGTCACCCCACGCCAAT+TGG 0.422376 4_2:-58251524 Msa0610500:CDS
GCATGGAACTTTGTTAATGA+TGG 0.427217 4_2:-58251765 Msa0610500:CDS
GAGGGTTGTACTTGCCACTT+TGG 0.427992 4_2:-58251877 Msa0610500:CDS
CCAACAAGTTTATCTTTGTC+GGG 0.428315 4_2:+58250902 None:intergenic
AAGCAGAAGGGGCTGCTGCA+GGG 0.429292 4_2:-58251147 Msa0610500:CDS
AGAGACTCCTCGTCCTCTTA+AGG 0.429831 4_2:-58253114 Msa0610500:CDS
AAGCTTCACTTTCAGGAACT+TGG 0.431818 4_2:+58251582 None:intergenic
TCACCATGATCTTCATCATC+AGG 0.433315 4_2:+58250410 None:intergenic
CGTCAGACGGTGAGAAGGTC+TGG 0.435777 4_2:-58251558 Msa0610500:CDS
CATATGGCAGCACTTGTGTC+TGG 0.444420 4_2:-58255129 Msa0610500:CDS
ACCTTGAGGAGGCTAGAGAC+AGG 0.452830 4_2:-58250385 Msa0610500:CDS
ACCGAAAACCAAAGCAATGA+TGG 0.455608 4_2:-58251004 Msa0610500:CDS
ACCATTTACTACAGCTAAAG+TGG 0.456702 4_2:+58249766 None:intergenic
GACGATAAAGAAAGATGTAA+TGG 0.462192 4_2:-58250672 Msa0610500:CDS
GGGAGCGAGAGCTGCTGCAA+GGG 0.466897 4_2:-58251125 Msa0610500:CDS
GATGGCACCAACCCTCCAAT+TGG 0.470978 4_2:+58251509 None:intergenic
ATGAGAATAACATCCTTAAG+AGG 0.474735 4_2:+58253101 None:intergenic
AGCAGAAGGGGCTGCTGCAG+GGG 0.477059 4_2:-58251146 Msa0610500:CDS
CGGTGAGAAGGTCTGGTGGC+AGG 0.483751 4_2:-58251551 Msa0610500:CDS
ATCCTTCCCATCCCCTTACT+CGG 0.488602 4_2:+58250220 None:intergenic
ACCAACCCTCCAATTGGCGT+GGG 0.488824 4_2:+58251515 None:intergenic
AAGAAGAAGCATTGGGTCGC+TGG 0.490936 4_2:-58255047 Msa0610500:CDS
AGAATTTCATGCTGTTGTCA+GGG 0.491351 4_2:-58250017 Msa0610500:three_prime_UTR
AATGCTCCGTCAAGAAAAGA+TGG 0.494895 4_2:-58254997 Msa0610500:CDS
TGGTCAAAATCTGGAGCGTC+GGG 0.495188 4_2:-58250792 Msa0610500:CDS
GCAGAAGGGGCTGCTGCAGG+GGG 0.499172 4_2:-58251145 Msa0610500:CDS
GACATTTCTTAATTATGGAA+CGG 0.500098 4_2:-58250099 Msa0610500:three_prime_UTR
GCTTGAAGATGGAGTAGAGT+TGG 0.501501 4_2:-58250483 Msa0610500:CDS
TTGCATTACTACCAAAATTG+AGG 0.502018 4_2:+58249990 None:intergenic
AAGCCACATCATATTGCGGC+AGG 0.507122 4_2:-58251622 Msa0610500:CDS
CTTTCAGGAACTTGGCAGCA+AGG 0.508345 4_2:+58251590 None:intergenic
GAGCGTCGGGAAGGCCCACT+TGG 0.512626 4_2:-58250779 Msa0610500:CDS
AGATAAGCAAGAAGAAGCAT+TGG 0.512627 4_2:-58255055 Msa0610500:CDS
ATTGAGAGGGAGCTTGAAGA+TGG 0.513193 4_2:-58250494 Msa0610500:CDS
ATTGAGAGGGAGCTTGAAGA+TGG 0.513193 4_2:-58250635 Msa0610500:CDS
AACAGTGCAACTAACCCATA+TGG 0.513524 4_2:-58255145 Msa0610500:exon
TTCTTTATGGCCTCGACAAG+GGG 0.513974 4_2:+58251822 None:intergenic
AGACACAAGTGCTGCCATAT+GGG 0.513981 4_2:+58255131 None:intergenic
GGAAGATGCAGCAAAGGTCG+AGG 0.520520 4_2:+58256824 None:intergenic
AAAGAAAGATGTAATGGATG+AGG 0.521411 4_2:-58250666 Msa0610500:CDS
ACAAGATGGACTCGGAAACC+AGG 0.523113 4_2:-58250949 Msa0610500:CDS
CCCTGTCTCTAGCCTCCTCA+AGG 0.523922 4_2:+58250384 None:intergenic
TCCTGCGATGAGTGAAGAGC+AGG 0.524474 4_2:-58251101 Msa0610500:CDS
CAAGGGGCTTATATGGATGT+TGG 0.524723 4_2:+58251838 None:intergenic
CATGGAACTTTGTTAATGAT+GGG 0.529596 4_2:-58251764 Msa0610500:intron
TGTCACCCCACGCCAATTGG+AGG 0.530719 4_2:-58251521 Msa0610500:CDS
GAACAATCGCAAGAGAAAGA+AGG 0.530737 4_2:-58250309 Msa0610500:CDS
TAGCTTATGCTTTCTTTGGG+GGG 0.531506 4_2:-58250048 Msa0610500:three_prime_UTR
TAATTGCACTACCAAAATTG+AGG 0.532832 4_2:+58250072 None:intergenic
GGGGAGCGAGAGCTGCTGCA+AGG 0.533292 4_2:-58251126 Msa0610500:CDS
TTGGTCAAAATCTGGAGCGT+CGG 0.534668 4_2:-58250793 Msa0610500:CDS
AATCAAGATTGACAAAGATA+AGG 0.536877 4_2:-58250738 Msa0610500:CDS
CACCAACCCTCCAATTGGCG+TGG 0.539896 4_2:+58251514 None:intergenic
GGTTAGTTGCACTGTTGACT+GGG 0.542770 4_2:+58255152 None:intergenic
GGAGCGAGAGCTGCTGCAAG+GGG 0.545688 4_2:-58251124 Msa0610500:CDS
GCCTGCTCTTCACTCATCGC+AGG 0.545877 4_2:+58251100 None:intergenic
AATGATGGGAGTGCAGAAAT+GGG 0.546932 4_2:-58250989 Msa0610500:CDS
AACAAGTCTAGCTTCAATGT+TGG 0.549540 4_2:-58250812 Msa0610500:CDS
AGAAGTTAGCAATCAAATGT+TGG 0.552225 4_2:-58251212 Msa0610500:CDS
GATAAGCAAGAAGAAGCATT+GGG 0.552512 4_2:-58255054 Msa0610500:CDS
AGTTCCATGCAACTTGTGCA+AGG 0.554121 4_2:+58251778 None:intergenic
TCTGGAGAGTTGCCACATCA+TGG 0.557018 4_2:-58255111 Msa0610500:CDS
TTTCCACAGATGAGCACTGA+GGG 0.558715 4_2:+58251050 None:intergenic
CTTCTTTATGGCCTCGACAA+GGG 0.558922 4_2:+58251821 None:intergenic
CACAAGGAAGTGAAGCAGAA+GGG 0.559027 4_2:-58251159 Msa0610500:CDS
AACAATCGCAAGAGAAAGAA+GGG 0.561015 4_2:-58250308 Msa0610500:CDS
GATTGACAAAGATAAGGTAA+AGG 0.564547 4_2:-58250732 Msa0610500:CDS
ATAGCTTATGCTTTCTTTGG+GGG 0.565752 4_2:-58250049 Msa0610500:three_prime_UTR
AATAGCTTATGCTTTCTTTG+GGG 0.570413 4_2:-58250050 Msa0610500:three_prime_UTR
ACTTCTTTATGGCCTCGACA+AGG 0.571121 4_2:+58251820 None:intergenic
TTATCCTCTGTGCAGCAGCA+GGG 0.572300 4_2:+58253051 None:intergenic
TTCCGAGTAAGGGGATGGGA+AGG 0.576072 4_2:-58250222 Msa0610500:exon
ACGCCCTTGCACAAGTTGCA+TGG 0.578134 4_2:-58251782 Msa0610500:CDS
TGATAAGGAATTGATGACTC+TGG 0.578618 4_2:-58250141 Msa0610500:three_prime_UTR
CCGAAAACCAAAGCAATGAT+GGG 0.583069 4_2:-58251003 Msa0610500:CDS
CCGTCAGATGCTCCATGATG+TGG 0.583282 4_2:+58255099 None:intergenic
CATAATTAAGAAATGTCAGA+AGG 0.586172 4_2:+58250105 None:intergenic
AGAGAAACTTGTTGCCACAA+AGG 0.587519 4_2:-58250873 Msa0610500:CDS
CAAAATCTGGAGCGTCGGGA+AGG 0.591685 4_2:-58250788 Msa0610500:CDS
CTTTGGGTGACTGACCAAGT+GGG 0.592539 4_2:+58250765 None:intergenic
AAAGTGAAGCTTCCGTCAGA+CGG 0.595709 4_2:-58251571 Msa0610500:CDS
CGAGGATGATCTCATTGAGA+GGG 0.600498 4_2:-58250507 Msa0610500:CDS
TCACAAGGAAGTGAAGCAGA+AGG 0.601746 4_2:-58251160 Msa0610500:CDS
TCCATATAAGCCCCTTGTCG+AGG 0.604206 4_2:-58251832 Msa0610500:CDS
GCTTCCGTCAGACGGTGAGA+AGG 0.605256 4_2:-58251563 Msa0610500:CDS
GTCACCCCACGCCAATTGGA+GGG 0.605796 4_2:-58251520 Msa0610500:intron
ATTCAAGTCAAAAGCCAAAG+TGG 0.607668 4_2:+58251863 None:intergenic
ACAAGGAAGTGAAGCAGAAG+GGG 0.610265 4_2:-58251158 Msa0610500:CDS
GAATTTCATGCTGTTGTCAG+GGG 0.610576 4_2:-58250016 Msa0610500:three_prime_UTR
CTCATGCAAAGAATGACCGA+AGG 0.612140 4_2:-58254439 Msa0610500:CDS
CCACATCATGGAGCATCTGA+CGG 0.614623 4_2:-58255099 Msa0610500:CDS
GCAATTGGAAGATGCAGCAA+AGG 0.615685 4_2:+58256818 None:intergenic
TCTTTGGGTGACTGACCAAG+TGG 0.615707 4_2:+58250764 None:intergenic
TGAGGATGATCTCATTGAGA+GGG 0.615735 4_2:-58250648 Msa0610500:CDS
AATAGTATAGAGATAGAGCA+AGG 0.615978 4_2:-58249821 Msa0610500:three_prime_UTR
TGACATTACTGATCACAAGA+TGG 0.617081 4_2:-58250963 Msa0610500:CDS
AGATCATGGTGAGGACCTTG+AGG 0.617441 4_2:-58250399 Msa0610500:CDS
TCCACAGATGAGCACTGAGG+GGG 0.619491 4_2:+58251052 None:intergenic
GCTGTTGCTATAGTTACTTG+AGG 0.621138 4_2:+58254497 None:intergenic
CCTTGAGGAGGCTAGAGACA+GGG 0.621815 4_2:-58250384 Msa0610500:CDS
AGGAGGCTACAGAATTAGGA+AGG 0.622197 4_2:-58250853 Msa0610500:CDS
CAGACCTTCTCACCGTCTGA+CGG 0.622614 4_2:+58251559 None:intergenic
AAGGCTTTACACATATCTAA+GGG 0.624719 4_2:-58249802 Msa0610500:three_prime_UTR
GTTCCATGCAACTTGTGCAA+GGG 0.625785 4_2:+58251779 None:intergenic
ATGAGGATGATCTCATTGAG+AGG 0.630170 4_2:-58250649 Msa0610500:CDS
AAGCCTGATGATGAAGATCA+TGG 0.631489 4_2:-58250413 Msa0610500:CDS
ATAACATCCTTAAGAGGACG+AGG 0.631649 4_2:+58253107 None:intergenic
ACGAGGATGATCTCATTGAG+AGG 0.632466 4_2:-58250508 Msa0610500:CDS
GAAGATGCAGCAAAGGTCGA+GGG 0.632683 4_2:+58256825 None:intergenic
CAAGATGGACTCGGAAACCA+GGG 0.633256 4_2:-58250948 Msa0610500:CDS
ATTTAAGCCACATCATATTG+CGG 0.635161 4_2:-58251626 Msa0610500:CDS
GAGGAGGCTAGAGACAGGGA+TGG 0.636161 4_2:-58250380 Msa0610500:CDS
AATTTCATGCTGTTGTCAGG+GGG 0.638756 4_2:-58250015 Msa0610500:three_prime_UTR
TACTGATCACAAGATGGACT+CGG 0.641859 4_2:-58250957 Msa0610500:CDS
GAAACTTGTTGCCACAAAGG+AGG 0.646264 4_2:-58250870 Msa0610500:CDS
TGCACAGAGGATAAAACAGA+AGG 0.652187 4_2:-58253042 Msa0610500:intron
AAAGAAAGATATAATGGACG+AGG 0.653196 4_2:-58250525 Msa0610500:CDS
TCATGCAAAGAATGACCGAA+GGG 0.662631 4_2:-58254438 Msa0610500:intron
CCAACCCTCCAATTGGCGTG+GGG 0.665875 4_2:+58251516 None:intergenic
TCATGGTGAGGACCTTGAGG+AGG 0.679281 4_2:-58250396 Msa0610500:CDS
GACGAAACTTGCAATTCACG+AGG 0.693484 4_2:-58256788 Msa0610500:five_prime_UTR
TTCCACAGATGAGCACTGAG+GGG 0.694472 4_2:+58251051 None:intergenic
AATAGAATTCCACAATCACA+AGG 0.696079 4_2:-58251175 Msa0610500:CDS
TGATGATGAAGATCATGGTG+AGG 0.696108 4_2:-58250408 Msa0610500:CDS
CAGACGGTGAGAAGGTCTGG+TGG 0.696264 4_2:-58251555 Msa0610500:CDS
GCACCTGCCGCAATATGATG+TGG 0.706575 4_2:+58251619 None:intergenic
AAGACCCTGCTGCTGCACAG+AGG 0.732068 4_2:-58253055 Msa0610500:CDS
AATTTGAAACACAAATAACG+TGG 0.749299 4_2:-58256903 Msa0610500:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATATGTTTATATTTG+TGG - chr4_2:58252019-58252038 Msa0610500:intron 10.0%
!!! ATATTCTAAAAATATGTTTA+AGG - chr4_2:58253076-58253095 Msa0610500:CDS 10.0%
!!! GTTGATTATTTTTTTTTTTT+GGG - chr4_2:58253283-58253302 Msa0610500:intron 10.0%
!!! TTTATTGAATTCATTTTAAT+AGG - chr4_2:58254962-58254981 Msa0610500:CDS 10.0%
!! ATTTCAATTTCAATTTCAAT+TGG - chr4_2:58250058-58250077 Msa0610500:three_prime_UTR 15.0%
!! TTTCAATTTCAATTTCAATT+GGG - chr4_2:58250059-58250078 Msa0610500:three_prime_UTR 15.0%
!! AACAAAATAATGAATATCAT+TGG + chr4_2:58251434-58251453 None:intergenic 15.0%
!! GAATAGGAAATAAATATTTA+CGG + chr4_2:58252099-58252118 None:intergenic 15.0%
!!! GGTTGATTATTTTTTTTTTT+TGG - chr4_2:58253282-58253301 Msa0610500:intron 15.0%
!! AAACTTAAAAGAATACTTAT+TGG - chr4_2:58253454-58253473 Msa0610500:intron 15.0%
!! AACTTAAAAGAATACTTATT+GGG - chr4_2:58253455-58253474 Msa0610500:intron 15.0%
!! AATAAATAGAATTAATTGCA+TGG - chr4_2:58254516-58254535 Msa0610500:intron 15.0%
!! TCAACAAACAAATATAATAA+GGG + chr4_2:58254708-58254727 None:intergenic 15.0%
!! TTCAACAAACAAATATAATA+AGG + chr4_2:58254709-58254728 None:intergenic 15.0%
!! AAGTTTACTATTATTTAAAC+AGG - chr4_2:58255362-58255381 Msa0610500:intron 15.0%
!! AAAAAAACCTATTTCCTATA+CGG + chr4_2:58250657-58250676 None:intergenic 20.0%
!!! TTTTCTATAATCTCATGATT+TGG - chr4_2:58251218-58251237 Msa0610500:intron 20.0%
!! TTTCTATAATCTCATGATTT+GGG - chr4_2:58251219-58251238 Msa0610500:intron 20.0%
!! TTACATGCATATTATGTATT+TGG - chr4_2:58251818-58251837 Msa0610500:CDS 20.0%
!!! AAATTCCTTTTAAATGTACT+TGG - chr4_2:58252059-58252078 Msa0610500:intron 20.0%
!!! AATTCCTTTTAAATGTACTT+GGG - chr4_2:58252060-58252079 Msa0610500:intron 20.0%
!!! CTTTCAAATAGATATTTTGT+AGG - chr4_2:58252262-58252281 Msa0610500:intron 20.0%
!! AAAAAAATTCAAAACCAAAC+AGG + chr4_2:58252516-58252535 None:intergenic 20.0%
!!! ATCTAGCTCAAATTTTAAAA+TGG - chr4_2:58252696-58252715 Msa0610500:intron 20.0%
!!! ATGCTAATTACAATTTTAGT+TGG - chr4_2:58252942-58252961 Msa0610500:intron 20.0%
!! AAAAACTCAACTTAAAAACA+TGG + chr4_2:58253193-58253212 None:intergenic 20.0%
!! ATCTATCATTCATATAAACT+AGG + chr4_2:58253421-58253440 None:intergenic 20.0%
!!! TTTTTTTGCTTGTATTTGAA+AGG + chr4_2:58254014-58254033 None:intergenic 20.0%
!! ATATGAATAAAAGAGGTTAT+TGG - chr4_2:58254364-58254383 Msa0610500:intron 20.0%
!! TAAGCATGATATCATTAAAT+AGG - chr4_2:58254412-58254431 Msa0610500:intron 20.0%
!! AAGCATGATATCATTAAATA+GGG - chr4_2:58254413-58254432 Msa0610500:intron 20.0%
!! AATCACAAAAATTTCGAATT+CGG + chr4_2:58254474-58254493 None:intergenic 20.0%
!!! TTTGTGATTATATTTGAAAC+TGG - chr4_2:58254485-58254504 Msa0610500:CDS 20.0%
!! ATAGAATTTGTAAATGATGT+AGG - chr4_2:58254728-58254747 Msa0610500:intron 20.0%
!!! CAGAAAGAATTAATTTTACT+TGG - chr4_2:58254765-58254784 Msa0610500:intron 20.0%
!! GACAATAAAGAAAGATATAA+TGG - chr4_2:58256137-58256156 Msa0610500:intron 20.0%
!! TTATCACATTAAGCAAATAA+AGG + chr4_2:58256513-58256532 None:intergenic 20.0%
!! TTTATTTGCTTAATGTGATA+AGG - chr4_2:58256512-58256531 Msa0610500:intron 20.0%
!!! ATTTTGAGTAATTCTTAACA+GGG + chr4_2:58256716-58256735 None:intergenic 20.0%
!! TACTCAAAATGAATTAGAAT+AGG - chr4_2:58256726-58256745 Msa0610500:intron 20.0%
!! ACTCAAAATGAATTAGAATA+GGG - chr4_2:58256727-58256746 Msa0610500:intron 20.0%
!! AATTTGAAACACAAATAACG+TGG - chr4_2:58249765-58249784 Msa0610500:three_prime_UTR 25.0%
! AGATAAAGAAAACAAATCGA+AGG + chr4_2:58249947-58249966 None:intergenic 25.0%
!!! TTTATTGATTCAAACCCTAT+CGG - chr4_2:58250128-58250147 Msa0610500:three_prime_UTR 25.0%
! TAAAAATCTTATCTGAGTTG+TGG - chr4_2:58250220-58250239 Msa0610500:exon 25.0%
! GAATTCGTATATTAGATGTT+GGG - chr4_2:58250242-58250261 Msa0610500:CDS 25.0%
!! GTTTTACACAAATTTGACAA+AGG + chr4_2:58250278-58250297 None:intergenic 25.0%
! ATTTGTGTAAAACGAAGATT+AGG - chr4_2:58250285-58250304 Msa0610500:CDS 25.0%
! TTTGTGTAAAACGAAGATTA+GGG - chr4_2:58250286-58250305 Msa0610500:CDS 25.0%
!!! AACGAACAGTTTTGAAAATT+AGG - chr4_2:58250323-58250342 Msa0610500:CDS 25.0%
!! AGTATACACTGAATGTTTTT+CGG - chr4_2:58250466-58250485 Msa0610500:CDS 25.0%
! AAAAAACCTATTTCCTATAC+GGG + chr4_2:58250656-58250675 None:intergenic 25.0%
! CAATCATATGCTATCTTTAT+GGG - chr4_2:58250713-58250732 Msa0610500:CDS 25.0%
!!! GATTTTTGTCATTTTCATCT+GGG - chr4_2:58250735-58250754 Msa0610500:CDS 25.0%
!!! ATTTTTGTCATTTTCATCTG+GGG - chr4_2:58250736-58250755 Msa0610500:CDS 25.0%
! AAAAACCCTATTTCCTATAT+GGG + chr4_2:58250876-58250895 None:intergenic 25.0%
! AAAAAACCCTATTTCCTATA+TGG + chr4_2:58250877-58250896 None:intergenic 25.0%
!! ATGCAATGTATTTAAAATCG+AGG + chr4_2:58251297-58251316 None:intergenic 25.0%
! AAATAATGAATATCATTGGC+CGG + chr4_2:58251430-58251449 None:intergenic 25.0%
! TGTACATTCTTACAAGATTT+AGG - chr4_2:58251734-58251753 Msa0610500:intron 25.0%
! ATACATAATATGCATGTAAC+TGG + chr4_2:58251817-58251836 None:intergenic 25.0%
!!! ATGTATTTGGAATTCTTTTG+AGG - chr4_2:58251831-58251850 Msa0610500:CDS 25.0%
!!! TGTATTTGGAATTCTTTTGA+GGG - chr4_2:58251832-58251851 Msa0610500:CDS 25.0%
!! CATACGATTTTGTATCTTAA+TGG - chr4_2:58251903-58251922 Msa0610500:CDS 25.0%
! AAAACCCAAGTACATTTAAA+AGG + chr4_2:58252067-58252086 None:intergenic 25.0%
! TCCTATTCTTGAAATTCAAT+TGG - chr4_2:58252111-58252130 Msa0610500:intron 25.0%
! TCCAATTGAATTTCAAGAAT+AGG + chr4_2:58252115-58252134 None:intergenic 25.0%
! TATTCTTGAAATTCAATTGG+AGG - chr4_2:58252114-58252133 Msa0610500:intron 25.0%
! GAATCGATGACAAAATATTA+TGG + chr4_2:58252196-58252215 None:intergenic 25.0%
! TCAAATTAAAAACAACACAC+AGG + chr4_2:58252408-58252427 None:intergenic 25.0%
! AAATAGTTCTTACAAAGCTT+AGG - chr4_2:58252630-58252649 Msa0610500:intron 25.0%
! CTTAAAGACATTCAAGAAAA+AGG + chr4_2:58253216-58253235 None:intergenic 25.0%
!!! TAGTCAAATTTGCACTTTTT+GGG - chr4_2:58253259-58253278 Msa0610500:intron 25.0%
!!! AGAAGGTGTTTTAATATTGT+TGG - chr4_2:58253643-58253662 Msa0610500:intron 25.0%
! CACAGATAAATCAAGAAATT+GGG + chr4_2:58253702-58253721 None:intergenic 25.0%
! TCACAGATAAATCAAGAAAT+TGG + chr4_2:58253703-58253722 None:intergenic 25.0%
! GAAAAGCAAGAAAAAAATGT+TGG + chr4_2:58253749-58253768 None:intergenic 25.0%
!! ACTCAGTTTAAGACTATAAT+TGG + chr4_2:58253777-58253796 None:intergenic 25.0%
! TGTATAGGATTTCAATATTG+AGG + chr4_2:58253917-58253936 None:intergenic 25.0%
! TGTTTCATGTGTTGAAATTT+AGG - chr4_2:58254127-58254146 Msa0610500:intron 25.0%
! GTTTCATGTGTTGAAATTTA+GGG - chr4_2:58254128-58254147 Msa0610500:intron 25.0%
! TCCAACAATATGAATAAAAG+AGG - chr4_2:58254357-58254376 Msa0610500:intron 25.0%
!! ACCTCTTTTATTCATATTGT+TGG + chr4_2:58254361-58254380 None:intergenic 25.0%
! AGAGCAACTATAGAATAAAA+TGG + chr4_2:58254577-58254596 None:intergenic 25.0%
! ATAAACAAAATACAAAGAGC+GGG + chr4_2:58254675-58254694 None:intergenic 25.0%
! GATAAACAAAATACAAAGAG+CGG + chr4_2:58254676-58254695 None:intergenic 25.0%
! AACAAATATAATAAGGGTCA+TGG + chr4_2:58254702-58254721 None:intergenic 25.0%
!! AATTAATTTTACTTGGAGAG+AGG - chr4_2:58254772-58254791 Msa0610500:intron 25.0%
!! ATTAATTTTACTTGGAGAGA+GGG - chr4_2:58254773-58254792 Msa0610500:intron 25.0%
! AAGTAAAATTAGAACAAGTG+TGG + chr4_2:58254944-58254963 None:intergenic 25.0%
! TTAGTATGCAAATGAATTGA+GGG + chr4_2:58255185-58255204 None:intergenic 25.0%
! AAAAAGCCTAATGAAAAAGT+GGG + chr4_2:58255336-58255355 None:intergenic 25.0%
! AAAAAAGCCTAATGAAAAAG+TGG + chr4_2:58255337-58255356 None:intergenic 25.0%
! AATCAAGATTGACAAAGATA+AGG - chr4_2:58255930-58255949 Msa0610500:intron 25.0%
! TAAAGGCCATATTAGAAAAA+AGG - chr4_2:58255953-58255972 Msa0610500:intron 25.0%
!!! CTTTCTCCTTTTTTCTAATA+TGG + chr4_2:58255962-58255981 None:intergenic 25.0%
! CATATTAGAAAAAAGGAGAA+AGG - chr4_2:58255960-58255979 Msa0610500:intron 25.0%
! GGAAAAATCATTGTGATAAT+TGG + chr4_2:58256430-58256449 None:intergenic 25.0%
!! GAAGAGAAAAATATTTGTTG+AGG - chr4_2:58256472-58256491 Msa0610500:intron 25.0%
! CATAATTAAGAAATGTCAGA+AGG + chr4_2:58256566-58256585 None:intergenic 25.0%
! CTTCTGACATTTCTTAATTA+TGG - chr4_2:58256564-58256583 Msa0610500:intron 25.0%
! GACATTTCTTAATTATGGAA+CGG - chr4_2:58256569-58256588 Msa0610500:intron 25.0%
! ACATTTCTTAATTATGGAAC+GGG - chr4_2:58256570-58256589 Msa0610500:intron 25.0%
! TTAATAGCTTATGCTTTCTT+TGG - chr4_2:58256616-58256635 Msa0610500:intron 25.0%
! TAATAGCTTATGCTTTCTTT+GGG - chr4_2:58256617-58256636 Msa0610500:intron 25.0%
!!! CATTTTGAGTAATTCTTAAC+AGG + chr4_2:58256717-58256736 None:intergenic 25.0%
! TTTAGTAGTTTCACTTCTTT+AGG + chr4_2:58256781-58256800 None:intergenic 25.0%
CAAAATCGAAAAAACGAAAG+AGG + chr4_2:58249980-58249999 None:intergenic 30.0%
GTATGAGATAAAGCGATAAA+TGG + chr4_2:58250022-58250041 None:intergenic 30.0%
GGAATTCGTATATTAGATGT+TGG - chr4_2:58250241-58250260 Msa0610500:CDS 30.0%
!! TGAATGTTTTTCGGTGAAAT+TGG - chr4_2:58250475-58250494 Msa0610500:CDS 30.0%
!! GAATGTTTTTCGGTGAAATT+GGG - chr4_2:58250476-58250495 Msa0610500:CDS 30.0%
TACTAACCTGCATGTAAAAA+CGG + chr4_2:58250599-58250618 None:intergenic 30.0%
!!! TGATGGGCTTGTTTTTTTAA+GGG + chr4_2:58250683-58250702 None:intergenic 30.0%
!!! TTGATGGGCTTGTTTTTTTA+AGG + chr4_2:58250684-58250703 None:intergenic 30.0%
TGATTGCACGAATAATTGAT+GGG + chr4_2:58250699-58250718 None:intergenic 30.0%
ATGATTGCACGAATAATTGA+TGG + chr4_2:58250700-58250719 None:intergenic 30.0%
GCAATCATATGCTATCTTTA+TGG - chr4_2:58250712-58250731 Msa0610500:CDS 30.0%
!!! GGATTTTTGTCATTTTCATC+TGG - chr4_2:58250734-58250753 Msa0610500:CDS 30.0%
!!! AAAAGACCTGTTTTTACATG+CGG - chr4_2:58250809-58250828 Msa0610500:CDS 30.0%
AGAAAACCCATATAGGAAAT+AGG - chr4_2:58250867-58250886 Msa0610500:CDS 30.0%
GAAAACCCATATAGGAAATA+GGG - chr4_2:58250868-58250887 Msa0610500:CDS 30.0%
AAAAAGTTGTAGGGAACATA+GGG + chr4_2:58250983-58251002 None:intergenic 30.0%
! GTTTTGCGCAAAATTTGAAA+GGG + chr4_2:58251275-58251294 None:intergenic 30.0%
!!! CCTTTGCTATTGATTTTGTA+CGG - chr4_2:58251372-58251391 Msa0610500:intron 30.0%
AATAATGAATATCATTGGCC+GGG + chr4_2:58251429-58251448 None:intergenic 30.0%
! TCAATTCCATCTTTTCTTGA+CGG + chr4_2:58251680-58251699 None:intergenic 30.0%
!! GTATTTGGAATTCTTTTGAG+GGG - chr4_2:58251833-58251852 Msa0610500:CDS 30.0%
ATGCAACTTACAAAAGATCA+GGG + chr4_2:58252299-58252318 None:intergenic 30.0%
AATGCAACTTACAAAAGATC+AGG + chr4_2:58252300-58252319 None:intergenic 30.0%
!!! AGTTGCATTTTGATTTAGTG+TGG - chr4_2:58252311-58252330 Msa0610500:intron 30.0%
TGTTTGTGCAATTGATATAG+TGG - chr4_2:58252336-58252355 Msa0610500:intron 30.0%
AACTCATAGTTTAAGAGCTT+CGG + chr4_2:58252660-58252679 None:intergenic 30.0%
AAGCTCTTAAACTATGAGTT+GGG - chr4_2:58252660-58252679 Msa0610500:intron 30.0%
CTATAGAAGAACAACAAATC+TGG + chr4_2:58253135-58253154 None:intergenic 30.0%
!! CAGATTTGTTGTTCTTCTAT+AGG - chr4_2:58253133-58253152 Msa0610500:CDS 30.0%
! GTAGTCAAATTTGCACTTTT+TGG - chr4_2:58253258-58253277 Msa0610500:intron 30.0%
!! AGTCAAATTTGCACTTTTTG+GGG - chr4_2:58253260-58253279 Msa0610500:intron 30.0%
!! GTATTTGTGTAAGTTGATTG+TGG - chr4_2:58253388-58253407 Msa0610500:intron 30.0%
TGCAAAAGAAATTCGTCAAT+TGG + chr4_2:58253492-58253511 None:intergenic 30.0%
ATGAGAATAACATCCTTAAG+AGG + chr4_2:58253570-58253589 None:intergenic 30.0%
ATCTGTGATCTTATTGCTAT+TGG - chr4_2:58253715-58253734 Msa0610500:intron 30.0%
! TCATAATTTGTGCTCAAACA+TGG - chr4_2:58253882-58253901 Msa0610500:intron 30.0%
! GTTTTCGTATGTCTTTTACT+CGG - chr4_2:58253964-58253983 Msa0610500:intron 30.0%
! TTTTCGTATGTCTTTTACTC+GGG - chr4_2:58253965-58253984 Msa0610500:intron 30.0%
GTATTTGAAAGGAAACAGAA+TGG + chr4_2:58254003-58254022 None:intergenic 30.0%
TAACTCATCCTTACAAAAAC+CGG - chr4_2:58254153-58254172 Msa0610500:intron 30.0%
CTTGAGAAGAGTTTATAAAG+AGG + chr4_2:58254200-58254219 None:intergenic 30.0%
TAAACAAAATACAAAGAGCG+GGG + chr4_2:58254674-58254693 None:intergenic 30.0%
AGCAACATTGAACTTCTTTA+TGG + chr4_2:58254862-58254881 None:intergenic 30.0%
CATGGAACTTTGTTAATGAT+GGG - chr4_2:58254904-58254923 Msa0610500:intron 30.0%
TATGATGTGGCTTAAATTGT+AGG + chr4_2:58255039-58255058 None:intergenic 30.0%
ATTTAAGCCACATCATATTG+CGG - chr4_2:58255042-58255061 Msa0610500:CDS 30.0%
TAGTATGCAAATGAATTGAG+GGG + chr4_2:58255184-58255203 None:intergenic 30.0%
CTTAGTATGCAAATGAATTG+AGG + chr4_2:58255186-58255205 None:intergenic 30.0%
! ACTAAGAAAGTTGATCCAAT+TGG - chr4_2:58255200-58255219 Msa0610500:intron 30.0%
AACACACAAAACTATCCAAT+TGG + chr4_2:58255218-58255237 None:intergenic 30.0%
!!! AATTGGATAGTTTTGTGTGT+TGG - chr4_2:58255217-58255236 Msa0610500:intron 30.0%
CCTAACTTGATATGAAAACA+GGG + chr4_2:58255293-58255312 None:intergenic 30.0%
AGAAGTTAGCAATCAAATGT+TGG - chr4_2:58255456-58255475 Msa0610500:intron 30.0%
AATAGAATTCCACAATCACA+AGG - chr4_2:58255493-58255512 Msa0610500:intron 30.0%
TCCAACAAGTTTATCTTTGT+CGG + chr4_2:58255770-58255789 None:intergenic 30.0%
TCAATCTTGATTGCTTCTTT+GGG + chr4_2:58255922-58255941 None:intergenic 30.0%
GATTGACAAAGATAAGGTAA+AGG - chr4_2:58255936-58255955 Msa0610500:intron 30.0%
GACGATAAAGAAAGATGTAA+TGG - chr4_2:58255996-58256015 Msa0610500:intron 30.0%
!! AAAGAAAGATGTAATGGATG+AGG - chr4_2:58256002-58256021 Msa0610500:intron 30.0%
!!! CTTTCTCATTTTTTCTAACG+CGG + chr4_2:58256103-58256122 None:intergenic 30.0%
!! AAAGAAAGATATAATGGACG+AGG - chr4_2:58256143-58256162 Msa0610500:intron 30.0%
ATGGATTCAATGCAGAAAAA+GGG - chr4_2:58256307-58256326 Msa0610500:intron 30.0%
! ACAATGATTTTTCCGAGTAA+GGG - chr4_2:58256436-58256455 Msa0610500:intron 30.0%
TAATTGCACTACCAAAATTG+AGG + chr4_2:58256599-58256618 None:intergenic 30.0%
AATAGCTTATGCTTTCTTTG+GGG - chr4_2:58256618-58256637 Msa0610500:intron 30.0%
TTGCATTACTACCAAAATTG+AGG + chr4_2:58256681-58256700 None:intergenic 30.0%
! CTGAATCTTTACTGCATTTT+TGG + chr4_2:58256817-58256836 None:intergenic 30.0%
CTCTATCTCTATACTATTGT+TGG + chr4_2:58256845-58256864 None:intergenic 30.0%
AATAGTATAGAGATAGAGCA+AGG - chr4_2:58256847-58256866 Msa0610500:five_prime_UTR 30.0%
AAGGCTTTACACATATCTAA+GGG - chr4_2:58256866-58256885 Msa0610500:five_prime_UTR 30.0%
GAAAACAAATCGAAGGAACT+GGG + chr4_2:58249940-58249959 None:intergenic 35.0%
AGAAAACAAATCGAAGGAAC+TGG + chr4_2:58249941-58249960 None:intergenic 35.0%
! AAAACGAAAGAGGCGTAAAA+AGG + chr4_2:58249970-58249989 None:intergenic 35.0%
! GGGTTGATTAATTTCCCAAA+CGG + chr4_2:58250180-58250199 None:intergenic 35.0%
GTAAAACGAAGATTAGGGTT+TGG - chr4_2:58250291-58250310 Msa0610500:CDS 35.0%
!! AAAAACCCGTTTTTACATGC+AGG - chr4_2:58250590-58250609 Msa0610500:CDS 35.0%
ACTAACCTGCATGTAAAAAC+GGG + chr4_2:58250598-58250617 None:intergenic 35.0%
AGAAAACCCGTATAGGAAAT+AGG - chr4_2:58250647-58250666 Msa0610500:CDS 35.0%
!!! AAAGACCTGTTTTTACATGC+GGG - chr4_2:58250810-58250829 Msa0610500:CDS 35.0%
GGTCATAAGAAAACCCATAT+AGG - chr4_2:58250860-58250879 Msa0610500:CDS 35.0%
GAAAAAGTTGTAGGGAACAT+AGG + chr4_2:58250984-58251003 None:intergenic 35.0%
ACTGGACAGAAAAAGTTGTA+GGG + chr4_2:58250992-58251011 None:intergenic 35.0%
! GGTTTTGCGCAAAATTTGAA+AGG + chr4_2:58251276-58251295 None:intergenic 35.0%
GCATACATGTAATTGATGTG+CGG - chr4_2:58251313-58251332 Msa0610500:intron 35.0%
CATACATGTAATTGATGTGC+GGG - chr4_2:58251314-58251333 Msa0610500:intron 35.0%
ATACATGTAATTGATGTGCG+GGG - chr4_2:58251315-58251334 Msa0610500:intron 35.0%
CCGTACAAAATCAATAGCAA+AGG + chr4_2:58251375-58251394 None:intergenic 35.0%
GTTATAGCACTCTAAATTCC+CGG - chr4_2:58251408-58251427 Msa0610500:intron 35.0%
ATCAACAAGCAGAAAGATTC+TGG + chr4_2:58251472-58251491 None:intergenic 35.0%
! AGATAAGCAAGAAGAAGCAT+TGG - chr4_2:58251613-58251632 Msa0610500:CDS 35.0%
!! GATAAGCAAGAAGAAGCATT+GGG - chr4_2:58251614-58251633 Msa0610500:CDS 35.0%
CAAAATCGTATGTGTATGAG+AGG + chr4_2:58251895-58251914 None:intergenic 35.0%
!! CGCTTTAAGATTGCATAGTT+GGG + chr4_2:58251933-58251952 None:intergenic 35.0%
TGCAACTTACAAAAGATCAG+GGG + chr4_2:58252298-58252317 None:intergenic 35.0%
TTGAAGTTGAAATGCTGTGT+TGG - chr4_2:58252438-58252457 Msa0610500:intron 35.0%
ATCAAGACACACAAGTTCTA+GGG + chr4_2:58252595-58252614 None:intergenic 35.0%
GAAGCTCTTAAACTATGAGT+TGG - chr4_2:58252659-58252678 Msa0610500:intron 35.0%
AGCTCTTAAACTATGAGTTG+GGG - chr4_2:58252661-58252680 Msa0610500:intron 35.0%
TATGATCCAACAGCAAATCT+AGG + chr4_2:58252735-58252754 None:intergenic 35.0%
TCCCATATCAACTAGAGATA+TGG - chr4_2:58252808-58252827 Msa0610500:intron 35.0%
! CCCATATCTCTAGTTGATAT+GGG + chr4_2:58252812-58252831 None:intergenic 35.0%
CCCATATCAACTAGAGATAT+GGG - chr4_2:58252809-58252828 Msa0610500:intron 35.0%
! CACAAATTTCTGACAGCTTT+TGG + chr4_2:58252913-58252932 None:intergenic 35.0%
TATTCTTGCAAAGCTCAAGT+TGG - chr4_2:58252995-58253014 Msa0610500:intron 35.0%
!! GTCAAATTTGCACTTTTTGG+GGG - chr4_2:58253261-58253280 Msa0610500:intron 35.0%
AGAACACTTTGAGTAGAAGT+TGG + chr4_2:58253332-58253351 None:intergenic 35.0%
! TGCTACAGTTTGCATGTTTT+TGG - chr4_2:58253518-58253537 Msa0610500:intron 35.0%
CTAGAAACTGACAAATTGGA+GGG + chr4_2:58253841-58253860 None:intergenic 35.0%
ATGCCTAGAAACTGACAAAT+TGG + chr4_2:58253845-58253864 None:intergenic 35.0%
AGGCATCACATCATCTATAT+TGG - chr4_2:58253859-58253878 Msa0610500:intron 35.0%
GAGCTACAAAAACACTGTAT+AGG + chr4_2:58253932-58253951 None:intergenic 35.0%
CATGAAACAGATTTCCATGA+AGG + chr4_2:58254116-58254135 None:intergenic 35.0%
! GGTTTTTGTAAGGATGAGTT+AGG + chr4_2:58254154-58254173 None:intergenic 35.0%
GAGAAGAGTTTATAAAGAGG+AGG + chr4_2:58254197-58254216 None:intergenic 35.0%
AGTTCTATATCTATCCGATG+TGG - chr4_2:58254220-58254239 Msa0610500:intron 35.0%
GTTCTATATCTATCCGATGT+GGG - chr4_2:58254221-58254240 Msa0610500:intron 35.0%
CTAACTAAATGTCGCAACTT+AGG - chr4_2:58254301-58254320 Msa0610500:intron 35.0%
CACAAAAATTTCGAATTCGG+TGG + chr4_2:58254471-58254490 None:intergenic 35.0%
TATAGCAGTTTGAGTGCAAT+GGG + chr4_2:58254607-58254626 None:intergenic 35.0%
ATATAGCAGTTTGAGTGCAA+TGG + chr4_2:58254608-58254627 None:intergenic 35.0%
GCACTCAAACTGCTATATAT+CGG - chr4_2:58254610-58254629 Msa0610500:intron 35.0%
ATTCAAGTCAAAAGCCAAAG+TGG + chr4_2:58254808-58254827 None:intergenic 35.0%
GCATGGAACTTTGTTAATGA+TGG - chr4_2:58254903-58254922 Msa0610500:intron 35.0%
!!! TAGGTTTTTTGTTCACACAC+TGG - chr4_2:58254981-58255000 Msa0610500:CDS 35.0%
! CCCTGTTTTCATATCAAGTT+AGG - chr4_2:58255290-58255309 Msa0610500:intron 35.0%
GCCTAACTTGATATGAAAAC+AGG + chr4_2:58255294-58255313 None:intergenic 35.0%
TTAAACAGGATGCTATCCTT+CGG - chr4_2:58255376-58255395 Msa0610500:intron 35.0%
TGACATTACTGATCACAAGA+TGG - chr4_2:58255705-58255724 Msa0610500:intron 35.0%
CCAACAAGTTTATCTTTGTC+GGG + chr4_2:58255769-58255788 None:intergenic 35.0%
! AACAAGTCTAGCTTCAATGT+TGG - chr4_2:58255856-58255875 Msa0610500:intron 35.0%
CTTCAATGTTGGTCAAAATC+TGG - chr4_2:58255867-58255886 Msa0610500:intron 35.0%
GTCAATCTTGATTGCTTCTT+TGG + chr4_2:58255923-58255942 None:intergenic 35.0%
AAAAAAGGAGAAAGGAACGA+GGG - chr4_2:58255968-58255987 Msa0610500:intron 35.0%
CGCGTTAGAAAAAATGAGAA+AGG - chr4_2:58256101-58256120 Msa0610500:intron 35.0%
GAAAAAATGAGAAAGGAACG+AGG - chr4_2:58256108-58256127 Msa0610500:intron 35.0%
! GATGGATTCAATGCAGAAAA+AGG - chr4_2:58256306-58256325 Msa0610500:intron 35.0%
TGGATTCAATGCAGAAAAAG+GGG - chr4_2:58256308-58256327 Msa0610500:intron 35.0%
AACAATCGCAAGAGAAAGAA+GGG - chr4_2:58256360-58256379 Msa0610500:intron 35.0%
! CACAATGATTTTTCCGAGTA+AGG - chr4_2:58256435-58256454 Msa0610500:intron 35.0%
! CAATGATTTTTCCGAGTAAG+GGG - chr4_2:58256437-58256456 Msa0610500:intron 35.0%
! TGATAAGGAATTGATGACTC+TGG - chr4_2:58256527-58256546 Msa0610500:intron 35.0%
ATAGCTTATGCTTTCTTTGG+GGG - chr4_2:58256619-58256638 Msa0610500:intron 35.0%
AGAATTTCATGCTGTTGTCA+GGG - chr4_2:58256651-58256670 Msa0610500:intron 35.0%
AAGAAACACTAGCAGATTAC+TGG + chr4_2:58256756-58256775 None:intergenic 35.0%
CAAGGCTTTACACATATCTA+AGG - chr4_2:58256865-58256884 Msa0610500:five_prime_UTR 35.0%
ACCATTTACTACAGCTAAAG+TGG + chr4_2:58256905-58256924 None:intergenic 35.0%
ATTGCAAGTTTCGTCGTGTT+CGG + chr4_2:58249875-58249894 None:intergenic 40.0%
CATGGTCAATAGTTCCGATA+GGG + chr4_2:58250145-58250164 None:intergenic 40.0%
ACATGGTCAATAGTTCCGAT+AGG + chr4_2:58250146-58250165 None:intergenic 40.0%
AAACGGAGCAGAGAAAAACA+TGG + chr4_2:58250163-58250182 None:intergenic 40.0%
! ATGTTTTTCTCTGCTCCGTT+TGG - chr4_2:58250162-58250181 Msa0610500:three_prime_UTR 40.0%
! TGTTTTTCTCTGCTCCGTTT+GGG - chr4_2:58250163-58250182 Msa0610500:three_prime_UTR 40.0%
! GAAAGACCGTTTTATGCACT+CGG - chr4_2:58250561-58250580 Msa0610500:CDS 40.0%
! AAAGACCGTTTTATGCACTC+GGG - chr4_2:58250562-58250581 Msa0610500:CDS 40.0%
!!! TTTGTCATTTTCATCTGGGG+AGG - chr4_2:58250739-58250758 Msa0610500:CDS 40.0%
ACTAACCCGCATGTAAAAAC+AGG + chr4_2:58250818-58250837 None:intergenic 40.0%
AGAATACCCATTTATGCACG+CGG - chr4_2:58250838-58250857 Msa0610500:CDS 40.0%
!! CAAAGGCATCATAACGCATA+GGG + chr4_2:58250950-58250969 None:intergenic 40.0%
GACTGGACAGAAAAAGTTGT+AGG + chr4_2:58250993-58251012 None:intergenic 40.0%
AAGGATGGAACAAACAAGGA+AGG + chr4_2:58251015-58251034 None:intergenic 40.0%
GAAGAAGGATGGAACAAACA+AGG + chr4_2:58251019-58251038 None:intergenic 40.0%
AACAAGCAGAAAGATTCTGG+AGG + chr4_2:58251469-58251488 None:intergenic 40.0%
AACAGTGCAACTAACCCATA+TGG - chr4_2:58251523-58251542 Msa0610500:CDS 40.0%
AATGCTCCGTCAAGAAAAGA+TGG - chr4_2:58251671-58251690 Msa0610500:intron 40.0%
!! GCGCTTTAAGATTGCATAGT+TGG + chr4_2:58251934-58251953 None:intergenic 40.0%
GCTGTTGCTATAGTTACTTG+AGG + chr4_2:58252174-58252193 None:intergenic 40.0%
TCATGCAAAGAATGACCGAA+GGG - chr4_2:58252230-58252249 Msa0610500:intron 40.0%
AACTTACAAAAGATCAGGGG+AGG + chr4_2:58252295-58252314 None:intergenic 40.0%
!!! GATACATGGTGGATGGTTTT+TGG - chr4_2:58252463-58252482 Msa0610500:intron 40.0%
! TCAAGACACACAAGTTCTAG+GGG + chr4_2:58252594-58252613 None:intergenic 40.0%
CATCAAGACACACAAGTTCT+AGG + chr4_2:58252596-58252615 None:intergenic 40.0%
TGTGTCTTGATGTCTAGAGA+TGG - chr4_2:58252604-58252623 Msa0610500:intron 40.0%
!! GACTATCCTAGATTTGCTGT+TGG - chr4_2:58252726-58252745 Msa0610500:intron 40.0%
! GCCCATATCTCTAGTTGATA+TGG + chr4_2:58252813-58252832 None:intergenic 40.0%
TATGGGCAAAGTAGTCTTTG+AGG - chr4_2:58252826-58252845 Msa0610500:intron 40.0%
AGAAGAACAACAAATCTGGC+AGG + chr4_2:58253131-58253150 None:intergenic 40.0%
!!! ACAGTTTGCATGTTTTTGGC+TGG - chr4_2:58253522-58253541 Msa0610500:intron 40.0%
!!! TTGCATGTTTTTGGCTGGAA+AGG - chr4_2:58253527-58253546 Msa0610500:intron 40.0%
ATAACATCCTTAAGAGGACG+AGG + chr4_2:58253564-58253583 None:intergenic 40.0%
TGCACAGAGGATAAAACAGA+AGG - chr4_2:58253626-58253645 Msa0610500:intron 40.0%
ATTCTATTCGCTTCAAGAGC+AGG - chr4_2:58253812-58253831 Msa0610500:intron 40.0%
CCTAGAAACTGACAAATTGG+AGG + chr4_2:58253842-58253861 None:intergenic 40.0%
CCTCCAATTTGTCAGTTTCT+AGG - chr4_2:58253839-58253858 Msa0610500:intron 40.0%
TTGTGCTCAAACATGGTAGA+TGG - chr4_2:58253889-58253908 Msa0610500:intron 40.0%
TGTGCTCAAACATGGTAGAT+GGG - chr4_2:58253890-58253909 Msa0610500:intron 40.0%
!!! TGAAGGCATTTTGCAGAATG+CGG + chr4_2:58254099-58254118 None:intergenic 40.0%
CATTCTGCAAAATGCCTTCA+TGG - chr4_2:58254099-58254118 Msa0610500:intron 40.0%
!! CTTACAAGCCGGTTTTTGTA+AGG + chr4_2:58254164-58254183 None:intergenic 40.0%
!! CTTACAAAAACCGGCTTGTA+AGG - chr4_2:58254162-58254181 Msa0610500:intron 40.0%
!! TCATTGTGTAGGCTTTGAGA+GGG + chr4_2:58254257-58254276 None:intergenic 40.0%
!! TTCATTGTGTAGGCTTTGAG+AGG + chr4_2:58254258-58254277 None:intergenic 40.0%
TCTCAAAGCCTACACAATGA+AGG - chr4_2:58254257-58254276 Msa0610500:intron 40.0%
TGGAAATTCCGCCTTAATTG+CGG + chr4_2:58254341-58254360 None:intergenic 40.0%
CAAGGATTCAAAAGCTGACA+GGG + chr4_2:58254644-58254663 None:intergenic 40.0%
ACAAGGATTCAAAAGCTGAC+AGG + chr4_2:58254645-58254664 None:intergenic 40.0%
AAAGAGCGGGGTTAAAAACA+AGG + chr4_2:58254662-58254681 None:intergenic 40.0%
TTTGTTCACACACTGGAAAG+TGG - chr4_2:58254988-58255007 Msa0610500:CDS 40.0%
AAGCTTCACTTTCAGGAACT+TGG + chr4_2:58255089-58255108 None:intergenic 40.0%
ATGCAAATGAATTGAGGGGA+TGG + chr4_2:58255180-58255199 None:intergenic 40.0%
!!! CACAGACCCACTTTTTCATT+AGG - chr4_2:58255327-58255346 Msa0610500:intron 40.0%
AAAAACAGCAAGGACTCAGA+AGG + chr4_2:58255429-58255448 None:intergenic 40.0%
TCTGCAAGAGAAAAACAGCA+AGG + chr4_2:58255439-58255458 None:intergenic 40.0%
! TGGTTTTCGGTTCTTGAAAC+TGG + chr4_2:58255655-58255674 None:intergenic 40.0%
ACCGAAAACCAAAGCAATGA+TGG - chr4_2:58255664-58255683 Msa0610500:intron 40.0%
!!! CCCATCATTGCTTTGGTTTT+CGG + chr4_2:58255668-58255687 None:intergenic 40.0%
CCGAAAACCAAAGCAATGAT+GGG - chr4_2:58255665-58255684 Msa0610500:intron 40.0%
! AATGATGGGAGTGCAGAAAT+GGG - chr4_2:58255679-58255698 Msa0610500:intron 40.0%
! TACTGATCACAAGATGGACT+CGG - chr4_2:58255711-58255730 Msa0610500:intron 40.0%
! TTTGTCGGGTAACTTTTCTG+AGG + chr4_2:58255755-58255774 None:intergenic 40.0%
CCCGACAAAGATAAACTTGT+TGG - chr4_2:58255766-58255785 Msa0610500:intron 40.0%
!! AGAGAAACTTGTTGCCACAA+AGG - chr4_2:58255795-58255814 Msa0610500:intron 40.0%
TAATTCTGTAGCCTCCTTTG+TGG + chr4_2:58255812-58255831 None:intergenic 40.0%
ACAAAGGAGGCTACAGAATT+AGG - chr4_2:58255811-58255830 Msa0610500:intron 40.0%
GAAAAAAGGAGAAAGGAACG+AGG - chr4_2:58255967-58255986 Msa0610500:intron 40.0%
AAAAAGGAGAAAGGAACGAG+GGG - chr4_2:58255969-58255988 Msa0610500:intron 40.0%
ATGAGGATGATCTCATTGAG+AGG - chr4_2:58256019-58256038 Msa0610500:intron 40.0%
TGAGGATGATCTCATTGAGA+GGG - chr4_2:58256020-58256039 Msa0610500:intron 40.0%
! AAGCCTGATGATGAAGATCA+TGG - chr4_2:58256255-58256274 Msa0610500:intron 40.0%
TCACCATGATCTTCATCATC+AGG + chr4_2:58256261-58256280 None:intergenic 40.0%
! TGATGATGAAGATCATGGTG+AGG - chr4_2:58256260-58256279 Msa0610500:intron 40.0%
GAACAATCGCAAGAGAAAGA+AGG - chr4_2:58256359-58256378 Msa0610500:intron 40.0%
TCAAGACGTTTCTTCGTTTC+TGG + chr4_2:58256405-58256424 None:intergenic 40.0%
! ATTTTTCCGAGTAAGGGGAT+GGG - chr4_2:58256442-58256461 Msa0610500:intron 40.0%
TAGCTTATGCTTTCTTTGGG+GGG - chr4_2:58256620-58256639 Msa0610500:intron 40.0%
GAGAATTTCATGCTGTTGTC+AGG - chr4_2:58256650-58256669 Msa0610500:intron 40.0%
GAATTTCATGCTGTTGTCAG+GGG - chr4_2:58256652-58256671 Msa0610500:intron 40.0%
AATTTCATGCTGTTGTCAGG+GGG - chr4_2:58256653-58256672 Msa0610500:intron 40.0%
! GCCACTTTAGCTGTAGTAAA+TGG - chr4_2:58256901-58256920 Msa0610500:five_prime_UTR 40.0%
GCAATTGGAAGATGCAGCAA+AGG + chr4_2:58249853-58249872 None:intergenic 45.0%
GACGAAACTTGCAATTCACG+AGG - chr4_2:58249880-58249899 Msa0610500:three_prime_UTR 45.0%
AGACGAAGTGTGTATGAGCA+TGG - chr4_2:58250374-58250393 Msa0610500:CDS 45.0%
GCCCAATCACCACAGTAAAT+CGG - chr4_2:58250498-58250517 Msa0610500:CDS 45.0%
! GCCGATTTACTGTGGTGATT+GGG + chr4_2:58250502-58250521 None:intergenic 45.0%
AGAAGACCCATTTATGCTCG+CGG - chr4_2:58250618-58250637 Msa0610500:CDS 45.0%
GGTCTTGAGAAAACCCGTAT+AGG - chr4_2:58250640-58250659 Msa0610500:CDS 45.0%
TCTGACCTGCATGCAGAAAA+CGG + chr4_2:58250790-58250809 None:intergenic 45.0%
GAATACCCATTTATGCACGC+GGG - chr4_2:58250839-58250858 Msa0610500:CDS 45.0%
TATGACCCGCGTGCATAAAT+GGG + chr4_2:58250847-58250866 None:intergenic 45.0%
TTATGACCCGCGTGCATAAA+TGG + chr4_2:58250848-58250867 None:intergenic 45.0%
!! GCAAAGGCATCATAACGCAT+AGG + chr4_2:58250951-58250970 None:intergenic 45.0%
TGGAACAAACAAGGAAGGAC+TGG + chr4_2:58251010-58251029 None:intergenic 45.0%
! GGTTAGTTGCACTGTTGACT+GGG + chr4_2:58251519-58251538 None:intergenic 45.0%
! AGACACAAGTGCTGCCATAT+GGG + chr4_2:58251540-58251559 None:intergenic 45.0%
ATAGTTACTTGAGGCCTGCA+GGG + chr4_2:58252165-58252184 None:intergenic 45.0%
TATAGTTACTTGAGGCCTGC+AGG + chr4_2:58252166-58252185 None:intergenic 45.0%
CTCATGCAAAGAATGACCGA+AGG - chr4_2:58252229-58252248 Msa0610500:intron 45.0%
! TGAAAGCATAACCCACCCTT+CGG + chr4_2:58252248-58252267 None:intergenic 45.0%
! ATGCTGTGTTGGCAGATACA+TGG - chr4_2:58252449-58252468 Msa0610500:intron 45.0%
TTCAACTGCAGATGCCTGTT+TGG - chr4_2:58252499-58252518 Msa0610500:intron 45.0%
! CTGTCCATGCTCTAGATGTA+CGG - chr4_2:58252758-58252777 Msa0610500:intron 45.0%
! AAGACCGTACATCTAGAGCA+TGG + chr4_2:58252765-58252784 None:intergenic 45.0%
TCTAGATGTACGGTCTTGAG+TGG - chr4_2:58252768-58252787 Msa0610500:intron 45.0%
CTAGATGTACGGTCTTGAGT+GGG - chr4_2:58252769-58252788 Msa0610500:intron 45.0%
!! CAAAGTAGTCTTTGAGGCCT+GGG - chr4_2:58252832-58252851 Msa0610500:intron 45.0%
!! AAAAACCGGCTTGTAAGGTG+AGG - chr4_2:58254167-58254186 Msa0610500:intron 45.0%
! AGCCTACACAATGAAGGTGT+TGG - chr4_2:58254263-58254282 Msa0610500:intron 45.0%
CTCCAACACCTTCATTGTGT+AGG + chr4_2:58254268-58254287 None:intergenic 45.0%
!! CTACACAATGAAGGTGTTGG+AGG - chr4_2:58254266-58254285 Msa0610500:intron 45.0%
ATGTCGCAACTTAGGTGACT+AGG - chr4_2:58254309-58254328 Msa0610500:intron 45.0%
TGTCGCAACTTAGGTGACTA+GGG - chr4_2:58254310-58254329 Msa0610500:intron 45.0%
CAAGGGGCTTATATGGATGT+TGG + chr4_2:58254833-58254852 None:intergenic 45.0%
TTCTTTATGGCCTCGACAAG+GGG + chr4_2:58254849-58254868 None:intergenic 45.0%
CTTCTTTATGGCCTCGACAA+GGG + chr4_2:58254850-58254869 None:intergenic 45.0%
ACTTCTTTATGGCCTCGACA+AGG + chr4_2:58254851-58254870 None:intergenic 45.0%
GTTCCATGCAACTTGTGCAA+GGG + chr4_2:58254892-58254911 None:intergenic 45.0%
AGTTCCATGCAACTTGTGCA+AGG + chr4_2:58254893-58254912 None:intergenic 45.0%
GAACTTGGCAGCAAGGAAAA+TGG + chr4_2:58255074-58255093 None:intergenic 45.0%
AAAGTGAAGCTTCCGTCAGA+CGG - chr4_2:58255097-58255116 Msa0610500:CDS 45.0%
CATTCATAGAGAGACACCGA+AGG + chr4_2:58255395-58255414 None:intergenic 45.0%
GCTTCACTTCCTTGTGATTG+TGG + chr4_2:58255505-58255524 None:intergenic 45.0%
TCACAAGGAAGTGAAGCAGA+AGG - chr4_2:58255508-58255527 Msa0610500:intron 45.0%
CACAAGGAAGTGAAGCAGAA+GGG - chr4_2:58255509-58255528 Msa0610500:intron 45.0%
ACAAGGAAGTGAAGCAGAAG+GGG - chr4_2:58255510-58255529 Msa0610500:intron 45.0%
!! TTTCCACAGATGAGCACTGA+GGG + chr4_2:58255621-58255640 None:intergenic 45.0%
!! TTTTCCACAGATGAGCACTG+AGG + chr4_2:58255622-58255641 None:intergenic 45.0%
! CAATGATGGGAGTGCAGAAA+TGG - chr4_2:58255678-58255697 Msa0610500:intron 45.0%
!! GAAACTTGTTGCCACAAAGG+AGG - chr4_2:58255798-58255817 Msa0610500:intron 45.0%
AGGAGGCTACAGAATTAGGA+AGG - chr4_2:58255815-58255834 Msa0610500:intron 45.0%
! TTGGTCAAAATCTGGAGCGT+CGG - chr4_2:58255875-58255894 Msa0610500:intron 45.0%
ATTGAGAGGGAGCTTGAAGA+TGG - chr4_2:58256033-58256052 Msa0610500:intron 45.0%
ACGAGGATGATCTCATTGAG+AGG - chr4_2:58256160-58256179 Msa0610500:intron 45.0%
CGAGGATGATCTCATTGAGA+GGG - chr4_2:58256161-58256180 Msa0610500:intron 45.0%
ATTGAGAGGGAGCTTGAAGA+TGG - chr4_2:58256033-58256052 Msa0610500:intron 45.0%
GCTTGAAGATGGAGTAGAGT+TGG - chr4_2:58256185-58256204 Msa0610500:intron 45.0%
!! TTCGTTTCTGGTTGACTTGC+TGG + chr4_2:58256393-58256412 None:intergenic 45.0%
! GATTTTTCCGAGTAAGGGGA+TGG - chr4_2:58256441-58256460 Msa0610500:intron 45.0%
!!! TAAAATAAAAAACAAATTTT+GGG + chr4_2:58250200-58250219 None:intergenic 5.0%
!!! ATAAAATAAAAAACAAATTT+TGG + chr4_2:58250201-58250220 None:intergenic 5.0%
!!! CTATTTTTTAAATAATTAAT+AGG + chr4_2:58250916-58250935 None:intergenic 5.0%
GAAGATGCAGCAAAGGTCGA+GGG + chr4_2:58249846-58249865 None:intergenic 50.0%
GTTTCGTCGTGTTCGGCAAT+TGG + chr4_2:58249868-58249887 None:intergenic 50.0%
CTTGCAATTCACGAGGCTTC+AGG - chr4_2:58249887-58249906 Msa0610500:three_prime_UTR 50.0%
GGCTTCTCTTCTCTACCTTC+TGG - chr4_2:58249908-58249927 Msa0610500:three_prime_UTR 50.0%
GGAACTGGGAACATACCAGA+AGG + chr4_2:58249926-58249945 None:intergenic 50.0%
CGAAGTGTGTATGAGCATGG+TGG - chr4_2:58250377-58250396 Msa0610500:CDS 50.0%
! GGCCGATTTACTGTGGTGAT+TGG + chr4_2:58250503-58250522 None:intergenic 50.0%
TAAATCGGCCGCAAAGGTGA+TGG - chr4_2:58250513-58250532 Msa0610500:CDS 50.0%
CCTGACCCGAGTGCATAAAA+CGG + chr4_2:58250570-58250589 None:intergenic 50.0%
GAAGACCCATTTATGCTCGC+GGG - chr4_2:58250619-58250638 Msa0610500:CDS 50.0%
CAAGACCCGCGAGCATAAAT+GGG + chr4_2:58250627-58250646 None:intergenic 50.0%
TCAAGACCCGCGAGCATAAA+TGG + chr4_2:58250628-58250647 None:intergenic 50.0%
! AGAACCCGTTTTCTGCATGC+AGG - chr4_2:58250782-58250801 Msa0610500:CDS 50.0%
CTGACCTGCATGCAGAAAAC+GGG + chr4_2:58250789-58250808 None:intergenic 50.0%
GGCATCATAACGCATAGGGA+AGG + chr4_2:58250946-58250965 None:intergenic 50.0%
GTAGGGAACATAGGGTTGCA+GGG + chr4_2:58250975-58250994 None:intergenic 50.0%
TGTAGGGAACATAGGGTTGC+AGG + chr4_2:58250976-58250995 None:intergenic 50.0%
CGAACGAGAGAGAAGAAGGA+TGG + chr4_2:58251030-58251049 None:intergenic 50.0%
GAGACGAACGAGAGAGAAGA+AGG + chr4_2:58251034-58251053 None:intergenic 50.0%
CTCTCTCGTTCGTCTCTGTT+CGG - chr4_2:58251038-58251057 Msa0610500:CDS 50.0%
!! GGGTTAGTTGCACTGTTGAC+TGG + chr4_2:58251520-58251539 None:intergenic 50.0%
! CAGACACAAGTGCTGCCATA+TGG + chr4_2:58251541-58251560 None:intergenic 50.0%
CATATGGCAGCACTTGTGTC+TGG - chr4_2:58251539-58251558 Msa0610500:CDS 50.0%
TCTGGAGAGTTGCCACATCA+TGG - chr4_2:58251557-58251576 Msa0610500:CDS 50.0%
! CCACATCATGGAGCATCTGA+CGG - chr4_2:58251569-58251588 Msa0610500:CDS 50.0%
!! AAGAAGAAGCATTGGGTCGC+TGG - chr4_2:58251621-58251640 Msa0610500:CDS 50.0%
ATTGTAGCTTCATCCCCTGC+AGG - chr4_2:58252148-58252167 Msa0610500:intron 50.0%
TAGTTACTTGAGGCCTGCAG+GGG + chr4_2:58252164-58252183 None:intergenic 50.0%
TGCAAAGAATGACCGAAGGG+TGG - chr4_2:58252233-58252252 Msa0610500:intron 50.0%
GCAAAGAATGACCGAAGGGT+GGG - chr4_2:58252234-58252253 Msa0610500:intron 50.0%
! CTGTGTTGGCAGATACATGG+TGG - chr4_2:58252452-58252471 Msa0610500:intron 50.0%
! GTTGGCAGATACATGGTGGA+TGG - chr4_2:58252456-58252475 Msa0610500:intron 50.0%
!! GCAAAGTAGTCTTTGAGGCC+TGG - chr4_2:58252831-58252850 Msa0610500:intron 50.0%
TGTGAGTGTGAAGATAGCCC+AGG + chr4_2:58252852-58252871 None:intergenic 50.0%
!!! TCACACCTCGAGCTAGCTTT+TGG - chr4_2:58252867-58252886 Msa0610500:intron 50.0%
!!! CACACCTCGAGCTAGCTTTT+GGG - chr4_2:58252868-58252887 Msa0610500:intron 50.0%
TCAACCCAAAAGCTAGCTCG+AGG + chr4_2:58252875-58252894 None:intergenic 50.0%
AGAGACTCCTCGTCCTCTTA+AGG - chr4_2:58253554-58253573 Msa0610500:intron 50.0%
TTATCCTCTGTGCAGCAGCA+GGG + chr4_2:58253620-58253639 None:intergenic 50.0%
TTTATCCTCTGTGCAGCAGC+AGG + chr4_2:58253621-58253640 None:intergenic 50.0%
! GGGTGGATTTAGTCCCACAT+CGG + chr4_2:58254237-58254256 None:intergenic 50.0%
!! TTGTGTAGGCTTTGAGAGGG+TGG + chr4_2:58254254-58254273 None:intergenic 50.0%
!! ACAATGAAGGTGTTGGAGGC+TGG - chr4_2:58254270-58254289 Msa0610500:intron 50.0%
GTCGCAACTTAGGTGACTAG+GGG - chr4_2:58254311-58254330 Msa0610500:intron 50.0%
! GAGGGTTGTACTTGCCACTT+TGG - chr4_2:58254791-58254810 Msa0610500:intron 50.0%
TCCATATAAGCCCCTTGTCG+AGG - chr4_2:58254836-58254855 Msa0610500:intron 50.0%
CACACTGGAAAGTGGCTTTC+AGG - chr4_2:58254996-58255015 Msa0610500:CDS 50.0%
AAGCCACATCATATTGCGGC+AGG - chr4_2:58255046-58255065 Msa0610500:CDS 50.0%
CTTTCAGGAACTTGGCAGCA+AGG + chr4_2:58255081-58255100 None:intergenic 50.0%
CTGACGGAAGCTTCACTTTC+AGG + chr4_2:58255096-58255115 None:intergenic 50.0%
CTACTGTCACATGTCTCGAC+TGG - chr4_2:58255262-58255281 Msa0610500:intron 50.0%
!! TTCCACAGATGAGCACTGAG+GGG + chr4_2:58255620-58255639 None:intergenic 50.0%
CTGCACTCCCATCATTGCTT+TGG + chr4_2:58255675-58255694 None:intergenic 50.0%
! ACAAGATGGACTCGGAAACC+AGG - chr4_2:58255719-58255738 Msa0610500:intron 50.0%
! CAAGATGGACTCGGAAACCA+GGG - chr4_2:58255720-58255739 Msa0610500:intron 50.0%
!! TTCTGAGGTCTGAGAATCCC+TGG + chr4_2:58255740-58255759 None:intergenic 50.0%
! TGGTCAAAATCTGGAGCGTC+GGG - chr4_2:58255876-58255895 Msa0610500:intron 50.0%
CTTTGGGTGACTGACCAAGT+GGG + chr4_2:58255906-58255925 None:intergenic 50.0%
TCTTTGGGTGACTGACCAAG+TGG + chr4_2:58255907-58255926 None:intergenic 50.0%
AGATCATGGTGAGGACCTTG+AGG - chr4_2:58256269-58256288 Msa0610500:intron 50.0%
ATCCTTCCCATCCCCTTACT+CGG + chr4_2:58256451-58256470 None:intergenic 50.0%
! GGAACGGGATGCCTCAATTT+TGG - chr4_2:58256585-58256604 Msa0610500:intron 50.0%
GGAAGATGCAGCAAAGGTCG+AGG + chr4_2:58249847-58249866 None:intergenic 55.0%
! CCTTTGCGGCCGATTTACTG+TGG + chr4_2:58250510-58250529 None:intergenic 55.0%
CCACAGTAAATCGGCCGCAA+AGG - chr4_2:58250507-58250526 Msa0610500:CDS 55.0%
! CCGTTTTATGCACTCGGGTC+AGG - chr4_2:58250567-58250586 Msa0610500:CDS 55.0%
CATAGGGTTGCAGGGAGCAA+AGG + chr4_2:58250967-58250986 None:intergenic 55.0%
CCGTCAGATGCTCCATGATG+TGG + chr4_2:58251572-58251591 None:intergenic 55.0%
GCACTCCTCACCTTACAAGC+CGG + chr4_2:58254175-58254194 None:intergenic 55.0%
! GGTGTTGGAGGCTGGAATGA+AGG - chr4_2:58254278-58254297 Msa0610500:intron 55.0%
CTAGGGGCGAACCGCAATTA+AGG - chr4_2:58254327-58254346 Msa0610500:intron 55.0%
GCCTCGACAAGGGGCTTATA+TGG + chr4_2:58254840-58254859 None:intergenic 55.0%
ACGCCCTTGCACAAGTTGCA+TGG - chr4_2:58254886-58254905 Msa0610500:intron 55.0%
GGAAAGTGGCTTTCAGGCTG+AGG - chr4_2:58255002-58255021 Msa0610500:CDS 55.0%
GCACCTGCCGCAATATGATG+TGG + chr4_2:58255052-58255071 None:intergenic 55.0%
CAGACCTTCTCACCGTCTGA+CGG + chr4_2:58255112-58255131 None:intergenic 55.0%
TGATGTCACCCCACGCCAAT+TGG - chr4_2:58255144-58255163 Msa0610500:exon 55.0%
ACCAACCCTCCAATTGGCGT+GGG + chr4_2:58255156-58255175 None:intergenic 55.0%
GATGGCACCAACCCTCCAAT+TGG + chr4_2:58255162-58255181 None:intergenic 55.0%
TCCTGCGATGAGTGAAGAGC+AGG - chr4_2:58255567-58255586 Msa0610500:intron 55.0%
!! TCCACAGATGAGCACTGAGG+GGG + chr4_2:58255619-58255638 None:intergenic 55.0%
!! CAAAATCTGGAGCGTCGGGA+AGG - chr4_2:58255880-58255899 Msa0610500:intron 55.0%
TCATGGTGAGGACCTTGAGG+AGG - chr4_2:58256272-58256291 Msa0610500:intron 55.0%
ACCTTGAGGAGGCTAGAGAC+AGG - chr4_2:58256283-58256302 Msa0610500:intron 55.0%
CCTTGAGGAGGCTAGAGACA+GGG - chr4_2:58256284-58256303 Msa0610500:intron 55.0%
TTCCGAGTAAGGGGATGGGA+AGG - chr4_2:58256446-58256465 Msa0610500:intron 55.0%
!!! GTCAGGGGGTGCCTCAATTT+TGG - chr4_2:58256667-58256686 Msa0610500:intron 55.0%
CGCGGCGCACATTAGGGTTT+GGG - chr4_2:58250539-58250558 Msa0610500:CDS 60.0%
! ATCTGGGGAGGCGCACACTA+GGG - chr4_2:58250751-58250770 Msa0610500:CDS 60.0%
! GGAGGCGCACACTAGGGTTT+GGG - chr4_2:58250757-58250776 Msa0610500:CDS 60.0%
AAGACCCTGCTGCTGCACAG+AGG - chr4_2:58253613-58253632 Msa0610500:intron 60.0%
GGGGCGAACCGCAATTAAGG+CGG - chr4_2:58254330-58254349 Msa0610500:intron 60.0%
GCTTCCGTCAGACGGTGAGA+AGG - chr4_2:58255105-58255124 Msa0610500:CDS 60.0%
CGTCAGACGGTGAGAAGGTC+TGG - chr4_2:58255110-58255129 Msa0610500:CDS 60.0%
CAGACGGTGAGAAGGTCTGG+TGG - chr4_2:58255113-58255132 Msa0610500:CDS 60.0%
TGTCACCCCACGCCAATTGG+AGG - chr4_2:58255147-58255166 Msa0610500:exon 60.0%
GTCACCCCACGCCAATTGGA+GGG - chr4_2:58255148-58255167 Msa0610500:exon 60.0%
CCAACCCTCCAATTGGCGTG+GGG + chr4_2:58255155-58255174 None:intergenic 60.0%
CACCAACCCTCCAATTGGCG+TGG + chr4_2:58255157-58255176 None:intergenic 60.0%
AAGCAGAAGGGGCTGCTGCA+GGG - chr4_2:58255521-58255540 Msa0610500:intron 60.0%
GCCTGCTCTTCACTCATCGC+AGG + chr4_2:58255571-58255590 None:intergenic 60.0%
ACCCCCTCAGTGCTCATCTG+TGG - chr4_2:58255615-58255634 Msa0610500:intron 60.0%
CCCTGTCTCTAGCCTCCTCA+AGG + chr4_2:58256287-58256306 None:intergenic 60.0%
GAGGAGGCTAGAGACAGGGA+TGG - chr4_2:58256288-58256307 Msa0610500:intron 60.0%
CCGCGCAGCCATCACCTTTG+CGG + chr4_2:58250524-58250543 None:intergenic 65.0%
! CCGCAAAGGTGATGGCTGCG+CGG - chr4_2:58250521-58250540 Msa0610500:CDS 65.0%
ATGGCTGCGCGGCGCACATT+AGG - chr4_2:58250532-58250551 Msa0610500:CDS 65.0%
TGGCTGCGCGGCGCACATTA+GGG - chr4_2:58250533-58250552 Msa0610500:CDS 65.0%
GCGCGGCGCACATTAGGGTT+TGG - chr4_2:58250538-58250557 Msa0610500:CDS 65.0%
! CATCTGGGGAGGCGCACACT+AGG - chr4_2:58250750-58250769 Msa0610500:CDS 65.0%
! GGGAGGCGCACACTAGGGTT+TGG - chr4_2:58250756-58250775 Msa0610500:CDS 65.0%
CGGTGAGAAGGTCTGGTGGC+AGG - chr4_2:58255117-58255136 Msa0610500:CDS 65.0%
CCCCACGCCAATTGGAGGGT+TGG - chr4_2:58255152-58255171 Msa0610500:five_prime_UTR 65.0%
GAAGCAGAAGGGGCTGCTGC+AGG - chr4_2:58255520-58255539 Msa0610500:intron 65.0%
AGCAGAAGGGGCTGCTGCAG+GGG - chr4_2:58255522-58255541 Msa0610500:intron 65.0%
GGGAGCGAGAGCTGCTGCAA+GGG - chr4_2:58255543-58255562 Msa0610500:intron 65.0%
GGAGCGAGAGCTGCTGCAAG+GGG - chr4_2:58255544-58255563 Msa0610500:intron 65.0%
GCAGAAGGGGCTGCTGCAGG+GGG - chr4_2:58255523-58255542 Msa0610500:intron 70.0%
GGGGAGCGAGAGCTGCTGCA+AGG - chr4_2:58255542-58255561 Msa0610500:intron 70.0%
!! GAGCGTCGGGAAGGCCCACT+TGG - chr4_2:58255889-58255908 Msa0610500:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 58249761 58256929 58249761 ID=Msa0610500;Name=Msa0610500
chr4_2 mRNA 58249761 58256929 58249761 ID=Msa0610500-mRNA-1;Parent=Msa0610500;Name=Msa0610500-mRNA-1;_AED=0.05;_eAED=0.05;_QI=238|1|1|1|0.83|0.71|7|474|590
chr4_2 exon 58249761 58251232 58249761 ID=Msa0610500-mRNA-1:exon:15281;Parent=Msa0610500-mRNA-1
chr4_2 exon 58251521 58251672 58251521 ID=Msa0610500-mRNA-1:exon:15280;Parent=Msa0610500-mRNA-1
chr4_2 exon 58251765 58251940 58251765 ID=Msa0610500-mRNA-1:exon:15279;Parent=Msa0610500-mRNA-1
chr4_2 exon 58253043 58253177 58253043 ID=Msa0610500-mRNA-1:exon:15278;Parent=Msa0610500-mRNA-1
chr4_2 exon 58254439 58254520 58254439 ID=Msa0610500-mRNA-1:exon:15277;Parent=Msa0610500-mRNA-1
chr4_2 exon 58254919 58255217 58254919 ID=Msa0610500-mRNA-1:exon:15276;Parent=Msa0610500-mRNA-1
chr4_2 exon 58256761 58256929 58256761 ID=Msa0610500-mRNA-1:exon:15275;Parent=Msa0610500-mRNA-1
chr4_2 five_prime_UTR 58256761 58256929 58256761 ID=Msa0610500-mRNA-1:five_prime_utr;Parent=Msa0610500-mRNA-1
chr4_2 five_prime_UTR 58255149 58255217 58255149 ID=Msa0610500-mRNA-1:five_prime_utr;Parent=Msa0610500-mRNA-1
chr4_2 CDS 58254919 58255148 58254919 ID=Msa0610500-mRNA-1:cds;Parent=Msa0610500-mRNA-1
chr4_2 CDS 58254439 58254520 58254439 ID=Msa0610500-mRNA-1:cds;Parent=Msa0610500-mRNA-1
chr4_2 CDS 58253043 58253177 58253043 ID=Msa0610500-mRNA-1:cds;Parent=Msa0610500-mRNA-1
chr4_2 CDS 58251765 58251940 58251765 ID=Msa0610500-mRNA-1:cds;Parent=Msa0610500-mRNA-1
chr4_2 CDS 58251521 58251672 58251521 ID=Msa0610500-mRNA-1:cds;Parent=Msa0610500-mRNA-1
chr4_2 CDS 58250235 58251232 58250235 ID=Msa0610500-mRNA-1:cds;Parent=Msa0610500-mRNA-1
chr4_2 three_prime_UTR 58249761 58250234 58249761 ID=Msa0610500-mRNA-1:three_prime_utr;Parent=Msa0610500-mRNA-1
Gene Sequence

>Msa0610500

ATGGCAGCACTTGTGTCTGGAGAGTTGCCACATCATGGAGCATCTGACGGAAGCTCTTGTAGAAGTTCTCAAGATAAGCAAGAAGAAGCATTGGGTCGCTGGTATATGTCTAGAAAAGAAATAGAAGAAAATGCTCCGTCAAGAAAAGATGGAATTGACTTGAAGAAAGAGACATATCTGCGCAAGTCATACTGTACATTCTTACAAGATTTAGGCATGCGACTTAAAGTGCCTCAAGTAACTATAGCAACAGCCATAATATTTTGTCATCGATTCTTTCTTCGACAATCTCATGCAAAGAATGACCGAAGGACAATTGCTACAGTTTGCATGTTTTTGGCTGGAAAGGTTGAAGAGACTCCTCGTCCTCTTAAGGATGTTATTCTCATATCTTATGAGATGATTCACAAGAAAGACCCTGCTGCTGCACAGAGGATAAAACAGAAGGAAGTATATGAGCAGCAGAAAGAATTAATTTTACTTGGAGAGAGGGTTGTACTTGCCACTTTGGCTTTTGACTTGAATGTCCAACATCCATATAAGCCCCTTGTCGAGGCCATAAAGAAGTTCAATGTTGCTAAGAACGCCCTTGCACAAGTTGCATGGAACTTTGTTAATGATGGGCTGAGGACATCACTCTGCCTACAATTTAAGCCACATCATATTGCGGCAGGTGCCATTTTCCTTGCTGCCAAGTTCCTGAAAGTGAAGCTTCCGTCAGACGGTGAGAAGGTCTGGTGGCAGGAGTTTGATGTCACCCCACGCCAATTGGAGGAAGTTAGCAATCAAATGTTGGAACTTTATGAGCAGAATAGAATTCCACAATCACAAGGAAGTGAAGCAGAAGGGGCTGCTGCAGGGGGAGCGAGAGCTGCTGCAAGGGGTCCTGCGATGAGTGAAGAGCAGGCTTCAAAACAAATTTCATCTCATTCACCCCCTCAGTGCTCATCTGTGGAAAATAATGCAGTACCAGTTTCAAGAACCGAAAACCAAAGCAATGATGGGAGTGCAGAAATGGGAAGTGACATTACTGATCACAAGATGGACTCGGAAACCAGGGATTCTCAGACCTCAGAAAAGTTACCCGACAAAGATAAACTTGTTGGAGATCAAGAGAAACTTGTTGCCACAAAGGAGGCTACAGAATTAGGAAGGAGTGATGATACATCATTAAACAAGTCTAGCTTCAATGTTGGTCAAAATCTGGAGCGTCGGGAAGGCCCACTTGGTCAGTCACCCAAAGAAGCAATCAAGATTGACAAAGATAAGGTAAAGGCCATATTAGAAAAAAGGAGAAAGGAACGAGGGGAAATGACGATAAAGAAAGATGTAATGGATGAGGATGATCTCATTGAGAGGGAGCTTGAAGATGGAGTTGAAATGACAAACAAGATGATTGACAAAGACAAAGTAAAGACCGCGTTAGAAAAAATGAGAAAGGAACGAGGTGAAATGACAATAAAGAAAGATATAATGGACGAGGATGATCTCATTGAGAGGGAGCTTGAAGATGGAGTAGAGTTGGCAGTTGAGAATGAGAAAAATAAGCAACAGAGAAGACAGAGCTTGTCTAAGCCTGATGATGAAGATCATGGTGAGGACCTTGAGGAGGCTAGAGACAGGGATGGATTCAATGCAGAAAAAGGGGATATGATAGATGATGCTTCATCTTTGTTGAACAATCGCAAGAGAAAGAAGGGTAGCTCTCCAGCAAGTCAACCAGAAACGAAGAAACGTCTTGATTCCAATTATCACAATGATTTTTCCGAGTAA
Protein sequence

>Msa0610500

MAALVSGELPHHGASDGSSCRSSQDKQEEALGRWYMSRKEIEENAPSRKDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILISYEMIHKKDPAAAQRIKQKEVYEQQKELILLGERVVLATLAFDLNVQHPYKPLVEAIKKFNVAKNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRIPQSQGSEAEGAAAGGARAAARGPAMSEEQASKQISSHSPPQCSSVENNAVPVSRTENQSNDGSAEMGSDITDHKMDSETRDSQTSEKLPDKDKLVGDQEKLVATKEATELGRSDDTSLNKSSFNVGQNLERREGPLGQSPKEAIKIDKDKVKAILEKRRKERGEMTIKKDVMDEDDLIERELEDGVEMTNKMIDKDKVKTALEKMRKERGEMTIKKDIMDEDDLIERELEDGVELAVENEKNKQQRRQSLSKPDDEDHGEDLEEARDRDGFNAEKGDMIDDASSLLNNRKRKKGSSPASQPETKKRLDSNYHNDFSE*