AlfalfaGEDB | Msa0506940

M. sativa cultivar zhongmu-4 / Msa0506940

KEGG: K07766
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
PFAM: PF00293.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0506940	XP_003600707.2	98.974	195	2	0	1	195	23	217	2.58e-137	392

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0506940	sp\|Q9LQU5\|NUD18_ARATH	68.354	158	48	1	10	167	1	156	1.84e-73	222

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0506940	A0A396IVT9	98.974	195	2	0	1	195	23	217	1.23e-137	392

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0506940	-0.839006	2.050718e-57	-8.615850e-47
Msa0006880	Msa0506940	0.814255	1.690823e-51	-8.615850e-47
Msa0010020	Msa0506940	0.801101	1.055416e-48	-8.615850e-47
Msa0015680	Msa0506940	0.807075	6.032812e-50	-8.615850e-47
Msa0027580	Msa0506940	0.816476	5.422184e-52	-8.615850e-47
Msa0030280	Msa0506940	0.807398	5.153132e-50	-8.615850e-47
Msa0032370	Msa0506940	0.854412	1.252663e-61	-8.615850e-47
Msa0055150	Msa0506940	0.810024	1.415670e-50	-8.615850e-47
Msa0057140	Msa0506940	0.800703	1.272873e-48	-8.615850e-47
Msa0075340	Msa0506940	0.816583	5.132590e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0506940	MtrunA17_Chr3g0110281	98.974	195	2	0	1	195	23	217	2.37e-141	392
Msa0506940	MtrunA17_Chr5g0434521	70.984	193	52	2	1	191	1	191	1.13e-95	276
Msa0506940	MtrunA17_Chr1g0161131	66.871	163	51	2	10	171	1	161	1.15e-73	219
Msa0506940	MtrunA17_Chr8g0391621	63.190	163	57	2	10	171	1	161	3.17e-70	211
Msa0506940	MtrunA17_Chr6g0479111	62.500	160	55	3	8	166	70	225	9.26e-67	204
Msa0506940	MtrunA17_Chr8g0353331	50.314	159	70	3	13	164	4	160	4.13e-48	155
Msa0506940	MtrunA17_Chr7g0252391	45.614	171	84	4	15	177	6	175	1.08e-38	132
Msa0506940	MtrunA17_Chr1g0189471	50.000	62	30	1	13	74	4	64	2.46e-14	65.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0506940	AT1G14860.1	68.354	158	48	1	10	167	1	156	1.87e-74	222
Msa0506940	AT2G01670.1	65.000	160	54	1	8	167	4	161	7.97e-73	218
Msa0506940	AT1G18300.1	64.151	159	55	2	8	165	38	195	4.43e-71	214
Msa0506940	AT1G73540.1	60.870	161	55	3	8	166	39	193	1.12e-64	198
Msa0506940	AT3G26690.1	46.629	178	81	5	12	177	3	178	1.39e-44	147
Msa0506940	AT3G26690.2	46.629	178	81	5	12	177	3	178	1.39e-44	147
Msa0506940	AT1G12880.1	48.171	164	72	4	13	164	4	166	8.14e-43	142
Msa0506940	AT3G12600.1	50.311	161	67	3	10	160	1	158	5.70e-39	132
Msa0506940	AT3G12600.2	50.336	149	61	3	22	160	4	149	3.79e-35	122

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Find 63 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTTCGTCAAAGAAGA+TGG	0.452927	3_4:-53787519	Msa0506940:CDS
AAAACTTCATCTCCAGTAAA+GGG	0.456071	3_4:+53786523	None:intergenic
AAAACTTCTTGAAGTCAATT+AGG	0.266342	3_4:-53786722	Msa0506940:three_prime_UTR
AAACCTTCGTCAAAGAAGAT+GGG	0.587211	3_4:-53787518	Msa0506940:intron
AAAGGTCGTCGTCAAGTTGT+TGG	0.437350	3_4:-53788673	Msa0506940:CDS
AACCTCTCTAATATGAAGAA+GGG	0.605647	3_4:-53786616	Msa0506940:three_prime_UTR
AAGGTCGTCGTCAAGTTGTT+GGG	0.471306	3_4:-53788672	Msa0506940:intron
AATAATTTGGCTCAATTCAA+TGG	0.336424	3_4:+53786948	None:intergenic
AATTCCTCTTGAACAAGTAG+AGG	0.573287	3_4:+53787559	None:intergenic
ACACACAATAATGGTTGCTT+TGG	0.348822	3_4:-53788758	Msa0506940:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAAGAAAATGTTGTCACAT+TGG	-	chr3_4:53786565-53786584	Msa0506940:three_prime_UTR	30.0%
GAGTTACAACGTTATAGAAA+AGG	-	chr3_4:53786605-53786624	Msa0506940:three_prime_UTR	30.0%
AAATTGTGACTTTCATTGTG+GGG	-	chr3_4:53786726-53786745	Msa0506940:three_prime_UTR	30.0%
CACCTCAAAATTATCAAAAG+TGG	+	chr3_4:53786778-53786797	None:intergenic	30.0%
ACCATACAGATATAAGATTG+GGG	-	chr3_4:53787104-53787123	Msa0506940:CDS	30.0%
TAACCTCTCTAATATGAAGA+AGG	-	chr3_4:53788679-53788698	Msa0506940:CDS	30.0%
AACCTCTCTAATATGAAGAA+GGG	-	chr3_4:53788680-53788699	Msa0506940:CDS	30.0%
TCTAATATGAAGAAGGGATA+AGG	-	chr3_4:53788686-53788705	Msa0506940:CDS	30.0%
ACATCACACAATACAATAAG+TGG	+	chr3_4:53788723-53788742	None:intergenic	30.0%
TGTGATGTGATTATCATTTG+TGG	-	chr3_4:53788735-53788754	Msa0506940:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	53786467	53788851	53786467	ID=Msa0506940;Name=Msa0506940
chr3_4	mRNA	53786467	53788851	53786467	ID=Msa0506940-mRNA-1;Parent=Msa0506940;Name=Msa0506940-mRNA-1;_AED=0.16;_eAED=0.16;_QI=81\|1\|1\|1\|1\|1\|5\|569\|195
chr3_4	exon	53786467	53787200	53786467	ID=Msa0506940-mRNA-1:exon:11938;Parent=Msa0506940-mRNA-1
chr3_4	exon	53787519	53787647	53787519	ID=Msa0506940-mRNA-1:exon:11937;Parent=Msa0506940-mRNA-1
chr3_4	exon	53787917	53788000	53787917	ID=Msa0506940-mRNA-1:exon:11936;Parent=Msa0506940-mRNA-1
chr3_4	exon	53788109	53788220	53788109	ID=Msa0506940-mRNA-1:exon:11935;Parent=Msa0506940-mRNA-1
chr3_4	exon	53788673	53788851	53788673	ID=Msa0506940-mRNA-1:exon:11934;Parent=Msa0506940-mRNA-1
chr3_4	five_prime_UTR	53788771	53788851	53788771	ID=Msa0506940-mRNA-1:five_prime_utr;Parent=Msa0506940-mRNA-1
chr3_4	CDS	53788673	53788770	53788673	ID=Msa0506940-mRNA-1:cds;Parent=Msa0506940-mRNA-1
chr3_4	CDS	53788109	53788220	53788109	ID=Msa0506940-mRNA-1:cds;Parent=Msa0506940-mRNA-1
chr3_4	CDS	53787917	53788000	53787917	ID=Msa0506940-mRNA-1:cds;Parent=Msa0506940-mRNA-1
chr3_4	CDS	53787519	53787647	53787519	ID=Msa0506940-mRNA-1:cds;Parent=Msa0506940-mRNA-1
chr3_4	CDS	53787036	53787200	53787036	ID=Msa0506940-mRNA-1:cds;Parent=Msa0506940-mRNA-1
chr3_4	three_prime_UTR	53786467	53787035	53786467	ID=Msa0506940-mRNA-1:three_prime_utr;Parent=Msa0506940-mRNA-1

Gene Sequence

>Msa0506940

ATGGTTGCTTTGGTTTCTCAAGAAAATGTTGTCACATTGGTTTCTCGTACTGGTAGAGAGTTACAACGTTATAGAAAAGGTCGTCGTCAAGTTGTTGGATGTATACCATACAGATATAAGATTGGGGAGAAAAATTCATTGGATGTTTTAGATGAATTGGAAGTTCTTGTTATAAGTTCTCAGAAAGGGAAAGGGATGCTATTTCCAAAGGGAGGCTGGGAATTAGATGAATCTCAAAAAGAGGCAGCTTTGAGAGAAACCATGGAGGAAGCTGGTGTACGAGGCATTGTTGAGGGTAAATTGGGTAAATGGAGTTTCAAGAGTAAAACATATGATACTTTATATGATGGTTACATGTTTCCTCTACTTGTTCAAGAGGAATTGGAGTTCTGGCCTGAACAAAACCTTCGTCAAAGAAGATGGATGAGCATATCTGAAGCAAGAGATGTTTGTCAACACTGGTGGATGAAAGAGGCTTTGGACAGACTAGTAAACCGTCTCTTAGGTCAAAAACTTGGTTCTGAGAAGCAAGTTCTACGTCCTCTAAATTGCATTGGAGATGCCAAATCTGACTTGTTAAAAGTGTAA

Protein sequence

>Msa0506940

MVALVSQENVVTLVSRTGRELQRYRKGRRQVVGCIPYRYKIGEKNSLDVLDELEVLVISSQKGKGMLFPKGGWELDESQKEAALRETMEEAGVRGIVEGKLGKWSFKSKTYDTLYDGYMFPLLVQEELEFWPEQNLRQRRWMSISEARDVCQHWWMKEALDRLVNRLLGQKLGSEKQVLRPLNCIGDAKSDLLKV*