AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0939000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0939000 MtrunA17_Chr6g0454711 95.515 1204 49 4 1 1200 1 1203 0.0 2132
Msa0939000 MtrunA17_Chr7g0220961 38.057 1256 643 23 1 1200 1 1177 0.0 671
Msa0939000 MtrunA17_Chr7g0274701 62.264 265 62 6 800 1057 8 241 8.97e-88 284
Msa0939000 MtrunA17_Chr4g0054401 29.005 824 558 5 43 840 6 828 5.88e-81 288
Msa0939000 MtrunA17_Chr6g0454681 92.908 141 9 1 1060 1200 22 161 9.78e-65 216
Msa0939000 MtrunA17_Chr1g0184641 63.636 143 22 2 922 1057 1 120 1.68e-45 160
Msa0939000 MtrunA17_Chr1g0184651 46.111 180 51 6 339 489 100 262 7.07e-21 95.9
Msa0939000 MtrunA17_Chr1g0184651 63.636 88 24 4 800 887 257 336 1.74e-20 94.7
Msa0939000 MtrunA17_Chr5g0421221 92.857 42 3 0 106 147 1 42 2.49e-19 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0939000 AT1G13220.3 40.801 1098 544 19 1 1066 1 1024 0.0 637
Msa0939000 AT1G67230.1 37.468 1185 642 19 43 1200 20 1132 0.0 627
Msa0939000 AT1G13220.2 40.590 1084 540 18 13 1066 2 1011 0.0 624
Msa0939000 AT1G68790.1 37.920 1221 601 19 1 1200 1 1085 0.0 604
Msa0939000 AT1G13220.1 49.741 386 174 5 1 371 1 381 1.03e-97 317
Msa0939000 AT5G65770.1 28.339 861 570 7 1 840 1 835 1.47e-79 283
Msa0939000 AT5G65770.3 28.339 861 570 7 1 840 1 835 1.47e-79 283
Msa0939000 AT5G65780.2 28.078 869 570 8 1 840 1 843 1.16e-75 272
Msa0939000 AT5G65770.2 27.703 888 568 9 1 840 1 862 7.86e-74 267

Find 278 sgRNAs with CRISPR-Local

Find 574 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACGTTCTTTCTTTACTTTC+TGG 0.120358 6_3:+10873848 None:intergenic
AGGTATCAAACACTCGATTT+AGG 0.165671 6_3:+10878726 None:intergenic
TTTGCTCATCAAGAAGTTTC+TGG 0.198103 6_3:+10874946 None:intergenic
TGGCTACTCTCCTATTTAAA+AGG 0.236080 6_3:+10870793 None:intergenic
AGTAGCCATAATCTAATCTT+TGG 0.256657 6_3:-10870778 Msa0939000:three_prime_UTR
TTTGATCTCCACAGACTTTA+CGG 0.257512 6_3:+10871201 None:intergenic
CCCTTTGCGAGGGCAGATTT+AGG 0.259378 6_3:+10878584 None:intergenic
TCTCAACAAGTGCGAGAAAA+TGG 0.273616 6_3:+10873803 None:intergenic
TGGAAGAGGTTTAGAGAAGT+TGG 0.277398 6_3:-10878464 Msa0939000:CDS
GGAAAGAGAGAGAAAATTTC+AGG 0.282006 6_3:-10874058 Msa0939000:CDS
GGTATCAAACACTCGATTTA+GGG 0.295672 6_3:+10878727 None:intergenic
ACTATCGGTCCTTCTATATT+AGG 0.297956 6_3:+10873457 None:intergenic
GATTTGAGATTTATTAATAA+AGG 0.307397 6_3:-10870731 Msa0939000:three_prime_UTR
CATGTAGCTGTGTTCATCTA+TGG 0.309600 6_3:+10873324 None:intergenic
CCCCTCTCTGGCAATGTTAT+CGG 0.310782 6_3:+10873366 None:intergenic
AAGGACAATGTTATCGCTTC+TGG 0.315795 6_3:-10873658 Msa0939000:CDS
GTCTTTGTCGACCAACCTTT+GGG 0.317806 6_3:+10873257 None:intergenic
TTGCTTTATCTAGCTTTGTA+TGG 0.318702 6_3:+10876154 None:intergenic
TTAACCCAAAGATTAGATTA+TGG 0.339623 6_3:+10870773 None:intergenic
TCAGCTACCACTGCTACTTC+AGG 0.340563 6_3:+10871262 None:intergenic
CAAACCATTCTGGATCTAAA+TGG 0.344630 6_3:-10873633 Msa0939000:CDS
GGTCTTTGTCGACCAACCTT+TGG 0.346536 6_3:+10873256 None:intergenic
TAGCAGCAAGGAGGAGGCCT+TGG 0.353756 6_3:-10874847 Msa0939000:CDS
GCTCCACCCACACAAGTTAC+AGG 0.356842 6_3:-10872944 Msa0939000:CDS
GCTTGCTGATCGGAAGAGTT+TGG 0.358553 6_3:-10874637 Msa0939000:CDS
GCTTCTGGCTCAAACCATTC+TGG 0.360128 6_3:-10873643 Msa0939000:CDS
GGAGCTTGAAAAGCTTGAAT+TGG 0.363341 6_3:-10874241 Msa0939000:CDS
GGCTTAGGTTTGAGAAAGAA+TGG 0.365881 6_3:-10874407 Msa0939000:CDS
CTCAGTGAAGGCTGTGGTTA+AGG 0.366251 6_3:-10873197 Msa0939000:CDS
CGATGAACCTCCGCCGCCGT+TGG 0.371742 6_3:-10878543 Msa0939000:CDS
CCTGTTTACCTCAGCAAGCC+TGG 0.372253 6_3:+10876065 None:intergenic
CCTGGGAGGAAAAGCAAATC+TGG 0.372959 6_3:-10873235 Msa0939000:CDS
AGGAGGAGGCCTTGGAGTAT+AGG 0.374167 6_3:-10874839 Msa0939000:CDS
AGAGAAAGAATTACATGAAC+TGG 0.379629 6_3:-10875442 Msa0939000:CDS
AGGACTGTGGGGAAGTTGTC+AGG 0.383083 6_3:-10873765 Msa0939000:CDS
CCAGGCTTGCTGAGGTAAAC+AGG 0.384351 6_3:-10876065 Msa0939000:CDS
GAGAATTTAAATGCTGAACT+TGG 0.385406 6_3:-10874615 Msa0939000:CDS
GGAGGAGGCCTTGGAGTATA+GGG 0.387491 6_3:-10874838 Msa0939000:CDS
TTGCCTCAGCCGATCGAACT+TGG 0.388572 6_3:+10877316 None:intergenic
AGAGCATTCTCGTTTGCAAT+TGG 0.391507 6_3:-10874508 Msa0939000:CDS
AGAAGCTTCTGGTGGTAAAC+AGG 0.391572 6_3:-10871302 Msa0939000:CDS
TCATTCACACCGCGTCGAAT+TGG 0.391919 6_3:-10878614 Msa0939000:CDS
GAAAGTGCTACACTGGAGTA+TGG 0.395439 6_3:-10871004 Msa0939000:CDS
ATTGGTACTTCAAATATAGC+TGG 0.403690 6_3:-10873541 Msa0939000:CDS
CTTGAAAGATGCTGCTGAAA+AGG 0.408230 6_3:-10874001 Msa0939000:CDS
CTTCTAGTTATGCTGAAGAT+TGG 0.410249 6_3:-10878484 Msa0939000:CDS
GAAAAGAGAGAAGCAAGATA+TGG 0.411646 6_3:-10874280 Msa0939000:CDS
TGACATTAGTGCAGAACAAC+AGG 0.416949 6_3:-10874361 Msa0939000:CDS
ATAGAATCTGTGTTAGTACT+AGG 0.419932 6_3:+10873562 None:intergenic
GCAGCAGTTTGAGCTTGAAA+TGG 0.421853 6_3:-10874901 Msa0939000:CDS
GTAGCCATAATCTAATCTTT+GGG 0.423050 6_3:-10870777 Msa0939000:three_prime_UTR
GAAAGATGATGAAGCGATGT+TGG 0.423626 6_3:-10878414 Msa0939000:CDS
GCTAGATAAAGCAAATGAAT+TGG 0.425018 6_3:-10876145 Msa0939000:CDS
TCGTGAAAGTTTGCTTCAAA+AGG 0.425567 6_3:-10876001 Msa0939000:CDS
ATTATCCATTAGCATTAGAA+TGG 0.425621 6_3:+10870625 None:intergenic
TACGAAGTCTGAGAGAATAA+AGG 0.426804 6_3:-10874760 Msa0939000:CDS
AGAGAGAGATCTAGAAGTGT+TGG 0.427600 6_3:-10875694 Msa0939000:CDS
TTCAAGAGCCTTTGTTTCGC+TGG 0.427609 6_3:+10871327 None:intergenic
AGGGGATAAACTGAAAATCT+TGG 0.429491 6_3:+10873582 None:intergenic
GATGAACCTCCGCCGCCGTT+GGG 0.430407 6_3:-10878542 Msa0939000:CDS
AAGATTTGAAGGAGTGGGAG+AGG 0.432343 6_3:-10875815 Msa0939000:CDS
GTGTCATCTCCTAATATAGA+AGG 0.432781 6_3:-10873466 Msa0939000:CDS
TGAGAAAGAATGGGAAGAAC+TGG 0.433982 6_3:-10874397 Msa0939000:CDS
TCGCACTTGTTGAGAAGCTC+AGG 0.436977 6_3:-10873795 Msa0939000:CDS
AACAAAGTTGAAATCATTGA+AGG 0.439065 6_3:-10874718 Msa0939000:CDS
GAGAAAATTTCAGGAGGAGA+TGG 0.442944 6_3:-10874049 Msa0939000:CDS
GAGAGAGCTGGAGAAGGAAA+AGG 0.444660 6_3:-10874667 Msa0939000:CDS
TTCCAACCTTGGTTTCCCTA+TGG 0.449849 6_3:+10874802 None:intergenic
ACTTGAGGGATGAGAGGCTT+AGG 0.450821 6_3:-10874422 Msa0939000:CDS
AGAGGAAGACGAAGAGGAGG+AGG 0.451006 6_3:-10870924 Msa0939000:CDS
CAAACAAAGGGAAGATTTGA+AGG 0.454244 6_3:-10875826 Msa0939000:CDS
CGCCGGAAAAGATGAATTCA+AGG 0.454564 6_3:+10878706 None:intergenic
AGATATGAAGTTGCGAGAGC+TGG 0.455780 6_3:-10876028 Msa0939000:CDS
GCAAATTAAATGTACTGCTT+AGG 0.458093 6_3:-10870661 Msa0939000:three_prime_UTR
GCAGAAAGATTTAATTATGA+AGG 0.459481 6_3:-10874454 Msa0939000:CDS
GCTTAGGTTTGAGAAAGAAT+GGG 0.462231 6_3:-10874406 Msa0939000:CDS
CTCTGGCAATGTTATCGGAT+TGG 0.464030 6_3:+10873371 None:intergenic
TCAGAAAAGGAAAGAGGAGA+TGG 0.464571 6_3:-10874094 Msa0939000:CDS
GAAAATAAAAGAGAGAGAGC+TGG 0.465720 6_3:-10874679 Msa0939000:CDS
AGTACTAACACAGATTCTAT+TGG 0.467255 6_3:-10873559 Msa0939000:CDS
TCTGCACTAGAGTCGTGGTT+TGG 0.467680 6_3:+10871230 None:intergenic
GATTTCGAGACTGGAGAAAG+AGG 0.467834 6_3:-10878387 Msa0939000:intron
TTGGGTTCTTTGACTGATAC+CGG 0.468029 6_3:-10878524 Msa0939000:CDS
GAAGAGGAGGAGGAGGATCC+CGG 0.468527 6_3:-10870914 Msa0939000:CDS
ATATTCAGTATTCCCCTCTC+TGG 0.468877 6_3:+10873354 None:intergenic
TCAAAGATGATCGAGTTGTA+AGG 0.470013 6_3:-10871183 Msa0939000:CDS
GCTTCAAATTCTCAGTCTCT+TGG 0.471592 6_3:+10874550 None:intergenic
GCATGTACTCACACTTTCTC+TGG 0.472735 6_3:+10875404 None:intergenic
GTTGGAGAAGATTTCGAGAC+TGG 0.473700 6_3:-10878396 Msa0939000:CDS
AAATCTTGGACGTGCATTTG+CGG 0.475636 6_3:+10873596 None:intergenic
TAATTCTTTATTAAAAGAAA+AGG 0.478156 6_3:-10875652 Msa0939000:CDS
AACTGCATGATGCAGAAGCC+AGG 0.479517 6_3:-10876083 Msa0939000:CDS
CAGCTACCACTGCTACTTCA+GGG 0.480342 6_3:+10871263 None:intergenic
AGCTACATGGAAAGTTTGAC+AGG 0.482662 6_3:-10873310 Msa0939000:CDS
AAAGAACCCAACGGCGGCGG+AGG 0.486387 6_3:+10878536 None:intergenic
TGTCCGTTATGACTGTCCTC+TGG 0.488777 6_3:-10870683 Msa0939000:three_prime_UTR
ACTGACTGTTGAGAATCATC+TGG 0.493393 6_3:+10873280 None:intergenic
TGCTTTATCTAGCTTTGTAT+GGG 0.494171 6_3:+10876155 None:intergenic
TGAAATTCAGAAAAGGAAAG+AGG 0.498030 6_3:-10874100 Msa0939000:CDS
GAGTTCTCAAGAGGAGATGT+AGG 0.498345 6_3:+10873682 None:intergenic
AAAAGAGAGAGAGCTGGAGA+AGG 0.499778 6_3:-10874673 Msa0939000:CDS
TTCTCCCCTGTAACTTGTGT+GGG 0.500234 6_3:+10872938 None:intergenic
TTTGCAATTGGAACTAAAGC+AGG 0.501696 6_3:-10874496 Msa0939000:CDS
TATGGAAGATAATTTAAAGA+AGG 0.502698 6_3:-10874262 Msa0939000:CDS
GAGAATAAAGGAGCAAGATA+AGG 0.504185 6_3:-10874748 Msa0939000:CDS
GCGAAACTCCGTTCAATCAC+CGG 0.505156 6_3:-10878686 Msa0939000:five_prime_UTR
CAGGCCATTTAGATCCAGAA+TGG 0.505160 6_3:+10873629 None:intergenic
TTGAGAATGAAATTCAGAAA+AGG 0.505300 6_3:-10874107 Msa0939000:CDS
TTCAATGCGGTCCACAGAGT+TGG 0.507071 6_3:+10871027 None:intergenic
GAAGGAAGCTGAAAACTTGA+GGG 0.507185 6_3:-10874436 Msa0939000:CDS
ACCTAAATCTGCCCTCGCAA+AGG 0.507616 6_3:-10878585 Msa0939000:CDS
GTCAAAGAACCCAACGGCGG+CGG 0.508443 6_3:+10878533 None:intergenic
AGGGGATCAGATTAGAGAAT+GGG 0.508665 6_3:-10873957 Msa0939000:CDS
GCTTTGTATGGGAAGAAGAC+TGG 0.510495 6_3:+10876166 None:intergenic
CCTAAATCTGCCCTCGCAAA+GGG 0.513002 6_3:-10878584 Msa0939000:CDS
TGGCAATGTTATCGGATTGG+AGG 0.513095 6_3:+10873374 None:intergenic
ATCAGTATTCTACAAACAAA+GGG 0.513188 6_3:-10875838 Msa0939000:CDS
GGAAGACGAAGAGGAGGAGG+AGG 0.513977 6_3:-10870921 Msa0939000:CDS
TAGAATCTGTGTTAGTACTA+GGG 0.514155 6_3:+10873563 None:intergenic
CAACGGCGGCGGAGGTTCAT+CGG 0.515294 6_3:+10878544 None:intergenic
TCAGGAATTGCAAGGACTGT+GGG 0.515834 6_3:-10873777 Msa0939000:CDS
GAGGGGATCAGATTAGAGAA+TGG 0.517472 6_3:-10873958 Msa0939000:CDS
AAATCACCGCAATTAATCGT+TGG 0.518018 6_3:+10878784 None:intergenic
TGAAGAGGAAGACGAAGAGG+AGG 0.518337 6_3:-10870927 Msa0939000:CDS
AATCAGTATTCTACAAACAA+AGG 0.518377 6_3:-10875839 Msa0939000:CDS
AAGGGAAGATTTGAAGGAGT+GGG 0.519187 6_3:-10875820 Msa0939000:CDS
TCCGATAACATTGCCAGAGA+GGG 0.519318 6_3:-10873367 Msa0939000:CDS
TAGTGATTCAATTAAACAAG+AGG 0.520601 6_3:-10874205 Msa0939000:CDS
AGTAGCTTTCTCAGTGTGAC+TGG 0.522329 6_3:+10873099 None:intergenic
ACCCCACACTCTTTACTGTC+AGG 0.524747 6_3:+10873715 None:intergenic
GTGATTGAACGGAGTTTCGC+CGG 0.527757 6_3:+10878689 None:intergenic
TTAACATTTACATCAGACTC+AGG 0.527946 6_3:+10873511 None:intergenic
CTGGAGTATGGAGATGAAGA+TGG 0.528626 6_3:-10870992 Msa0939000:CDS
TTTCCGATAGACACCTCACC+GGG 0.528768 6_3:+10870896 None:intergenic
AAAGGGAAGATTTGAAGGAG+TGG 0.529560 6_3:-10875821 Msa0939000:CDS
AGTCAATGACGTTGAAAATG+AGG 0.532131 6_3:-10870963 Msa0939000:CDS
AGTGATGGTAGGCAAAATCT+TGG 0.532235 6_3:-10875765 Msa0939000:CDS
GGGAAATCGAAGTCAACCAT+AGG 0.532315 6_3:-10874818 Msa0939000:CDS
GGAGATGGAGAAAGACCTGC+AGG 0.533102 6_3:-10874079 Msa0939000:CDS
CAGAGAAAATCACGACCTAT+CGG 0.533991 6_3:-10878647 Msa0939000:CDS
GGAGTTTAGCAGCAAGGAGG+AGG 0.534064 6_3:-10874853 Msa0939000:CDS
CTGGTGGGCGCAAGAAGAAA+AGG 0.535720 6_3:-10872976 Msa0939000:CDS
ACTCTTGCTTCTCAATAAGA+AGG 0.535766 6_3:+10877345 None:intergenic
CTCCACCCACACAAGTTACA+GGG 0.536013 6_3:-10872943 Msa0939000:CDS
TTGTCATCAACATTGTCTCT+TGG 0.538284 6_3:+10871061 None:intergenic
GCAAGAACTAGCTGAAACTC+AGG 0.538381 6_3:-10877297 Msa0939000:CDS
AGAATTTAAATGCTGAACTT+GGG 0.538482 6_3:-10874614 Msa0939000:CDS
AAGGAGGCCAATGAGTTCCT+AGG 0.539154 6_3:-10873178 Msa0939000:CDS
AAGGTTGGTCGACAAAGACC+TGG 0.539593 6_3:-10873253 Msa0939000:CDS
CATAGATGAACACAGCTACA+TGG 0.541220 6_3:-10873323 Msa0939000:CDS
TTGTCCTTTGAGTTCTCAAG+AGG 0.541562 6_3:+10873673 None:intergenic
AAGCTACTGGTAACAGTACA+AGG 0.542179 6_3:-10873084 Msa0939000:CDS
GGGAGAAGCGTTACAACCTC+AGG 0.543273 6_3:-10872922 Msa0939000:CDS
TGAAGAACAGTGAAGAAGAA+AGG 0.543709 6_3:-10874305 Msa0939000:CDS
AGATGAAGAGGAAGACGAAG+AGG 0.545687 6_3:-10870930 Msa0939000:CDS
TGCTAGAACACGCTCAGTGA+AGG 0.548424 6_3:-10873209 Msa0939000:CDS
TCTCCTATTTAAAAGGAATG+AGG 0.550019 6_3:+10870800 None:intergenic
CTCAAGAGGAGATGTAGGCA+AGG 0.550578 6_3:+10873687 None:intergenic
AACCATAGGGAAACCAAGGT+TGG 0.551919 6_3:-10874804 Msa0939000:CDS
AGATGTAGATGCAGAAGAGA+AGG 0.555930 6_3:-10875604 Msa0939000:intron
TGAAGGAAGCTGAAAACTTG+AGG 0.556071 6_3:-10874437 Msa0939000:CDS
TTCTTATTGAGAAGCAAGAG+TGG 0.556750 6_3:-10877343 Msa0939000:CDS
CTGAAAACTTGAGGGATGAG+AGG 0.558017 6_3:-10874428 Msa0939000:CDS
TCCCCTGTAACTTGTGTGGG+TGG 0.561225 6_3:+10872941 None:intergenic
CTTCTCCCCTGTAACTTGTG+TGG 0.561940 6_3:+10872937 None:intergenic
GTTCCAAGTTCGATCGGCTG+AGG 0.564595 6_3:-10877319 Msa0939000:CDS
CAAAGATGATCGAGTTGTAA+GGG 0.564712 6_3:-10871182 Msa0939000:intron
GTTATGCTGAAGATTGGAAG+AGG 0.565774 6_3:-10878478 Msa0939000:CDS
TCTGGTGGTAAACAGGAGGC+AGG 0.569608 6_3:-10871295 Msa0939000:CDS
AGGATATGCTAAGTGATGGT+AGG 0.570303 6_3:-10875776 Msa0939000:CDS
AGATAAAGCAAATGAATTGG+TGG 0.570947 6_3:-10876142 Msa0939000:CDS
TTGCCAGAGGACAGTCATAA+CGG 0.570969 6_3:+10870680 None:intergenic
CGCTGAGGAGTTTAGCAGCA+AGG 0.571506 6_3:-10874859 Msa0939000:CDS
AAAGCAAATGAATTGGTGGA+TGG 0.572221 6_3:-10876138 Msa0939000:CDS
TACCTGACAGTAAAGAGTGT+GGG 0.574126 6_3:-10873717 Msa0939000:CDS
AATGGTTTCTTTCAGCCACA+AGG 0.575417 6_3:+10873821 None:intergenic
CATTGAAGAAAGTGCTACAC+TGG 0.575960 6_3:-10871011 Msa0939000:CDS
AGAACAACAGGAAGTTGAGA+AGG 0.576331 6_3:-10874349 Msa0939000:CDS
AGTCACACTGAGAAAGCTAC+TGG 0.580719 6_3:-10873097 Msa0939000:CDS
TAACATTTACATCAGACTCA+GGG 0.580947 6_3:+10873512 None:intergenic
AGGAGAAATTGCTTGCTGAT+CGG 0.580962 6_3:-10874647 Msa0939000:CDS
TTGGTACTTCAAATATAGCT+GGG 0.581989 6_3:-10873540 Msa0939000:CDS
CGTTCTTGAAGAGTAACTAT+CGG 0.582739 6_3:+10873442 None:intergenic
TGACGTTGAAAATGAGGACG+AGG 0.582743 6_3:-10870957 Msa0939000:CDS
AGATGCTGCTGAAAAGGAAT+GGG 0.583771 6_3:-10873995 Msa0939000:CDS
CAAGAACGACAAATAGCAGA+TGG 0.584944 6_3:-10873427 Msa0939000:CDS
CTGCGGCGTGAACATTGCGC+CGG 0.585168 6_3:+10878667 None:intergenic
AAGATGCTGCTGAAAAGGAA+TGG 0.585528 6_3:-10873996 Msa0939000:CDS
TTCGATTTCCCTATACTCCA+AGG 0.586462 6_3:+10874830 None:intergenic
GGTGGATGGAATTGAAGAGA+AGG 0.587693 6_3:-10876124 Msa0939000:CDS
CTCAGGAATTGCAAGGACTG+TGG 0.588481 6_3:-10873778 Msa0939000:CDS
AGTTGGACTGCTTGATGAAG+CGG 0.588571 6_3:-10878447 Msa0939000:CDS
GGAAATCGAAGTCAACCATA+GGG 0.591240 6_3:-10874817 Msa0939000:CDS
CATTCAGACAGTACAACAGC+TGG 0.591601 6_3:-10872995 Msa0939000:CDS
CAACAGTCAGTCCCAAAGGT+TGG 0.593294 6_3:-10873268 Msa0939000:CDS
AGAATCTGTGTTAGTACTAG+GGG 0.593869 6_3:+10873564 None:intergenic
GGAGTTATCCAGCGAAACAA+AGG 0.594698 6_3:-10871335 Msa0939000:CDS
AGTGGAGTTCCAAGTTCGAT+CGG 0.595372 6_3:-10877325 Msa0939000:CDS
TGGGAAGAAGTCAAGTCTGA+GGG 0.596327 6_3:-10873976 Msa0939000:CDS
TCAGACAGTACAACAGCTGG+TGG 0.597261 6_3:-10872992 Msa0939000:CDS
TCAAATCTCAAAAGAAAACA+TGG 0.597369 6_3:+10870747 None:intergenic
TGATACCGGCGATGATGTTG+TGG 0.598348 6_3:-10878510 Msa0939000:CDS
AGCTTGAAATGGAACAAAAG+CGG 0.598423 6_3:-10874890 Msa0939000:CDS
ACAGGAAGTTGAGAAGGAGA+AGG 0.599786 6_3:-10874343 Msa0939000:CDS
AGCCACCACAACATCATCGC+CGG 0.603055 6_3:+10878505 None:intergenic
TGCGAGGGCAGATTTAGGTG+TGG 0.604336 6_3:+10878589 None:intergenic
AGAGAGGATATGCTAAGTGA+TGG 0.606221 6_3:-10875780 Msa0939000:CDS
ACATTGCGCCGGTGATTGAA+CGG 0.608062 6_3:+10878678 None:intergenic
TCAAGAGGAGATGTAGGCAA+GGG 0.609994 6_3:+10873688 None:intergenic
AGTGAAGGCTGTGGTTAAGG+AGG 0.611402 6_3:-10873194 Msa0939000:CDS
AACACGCTCAGTGAAGGCTG+TGG 0.612656 6_3:-10873203 Msa0939000:CDS
TATGAAGTTGCGAGAGCTGG+AGG 0.612971 6_3:-10876025 Msa0939000:CDS
TGAGAAGCTCAGGAATTGCA+AGG 0.613927 6_3:-10873785 Msa0939000:CDS
GAAAGAACGTGAACGCCTTG+TGG 0.614870 6_3:-10873836 Msa0939000:CDS
AAAGTTTGCTTCAAAAGGAG+CGG 0.615802 6_3:-10875996 Msa0939000:CDS
TTCTCAACAGTCAGTCCCAA+AGG 0.615847 6_3:-10873272 Msa0939000:CDS
TATGATTATCAGTACAACAT+GGG 0.616422 6_3:-10877371 Msa0939000:CDS
GGACTGTGGGGAAGTTGTCA+GGG 0.618125 6_3:-10873764 Msa0939000:CDS
AAAGTTGAAATCATTGAAGG+AGG 0.620070 6_3:-10874715 Msa0939000:CDS
GATCTCAACCGTAAAGTCTG+TGG 0.620220 6_3:-10871209 Msa0939000:CDS
ATCTCCTCTTGAGAACTCAA+AGG 0.620651 6_3:-10873677 Msa0939000:CDS
ATGGGAAGAAGTCAAGTCTG+AGG 0.620671 6_3:-10873977 Msa0939000:CDS
TGAGATCTGCACTAGAGTCG+TGG 0.621822 6_3:+10871225 None:intergenic
GAGGAAGCTACGGCAAAGAG+AGG 0.623939 6_3:-10875796 Msa0939000:CDS
CGACGCGGTGTGAATGATGC+CGG 0.624761 6_3:+10878620 None:intergenic
AATGATGCCGGTGTACCGAT+AGG 0.624939 6_3:+10878632 None:intergenic
CTTACGTCTTATGCCGCCTG+AGG 0.630170 6_3:+10872906 None:intergenic
CTTTCCGATAGACACCTCAC+CGG 0.632952 6_3:+10870895 None:intergenic
TGAAGCTTACTCAAGATGAG+AGG 0.633299 6_3:-10874533 Msa0939000:CDS
ATCCGATAACATTGCCAGAG+AGG 0.633599 6_3:-10873368 Msa0939000:CDS
TTGATGAAGCGGTAATGAAG+AGG 0.634571 6_3:-10878436 Msa0939000:CDS
GGATTCTGCAAAGAAAACGC+TGG 0.634610 6_3:-10875472 Msa0939000:CDS
CAGTACATTTAATTTGCCAG+AGG 0.636039 6_3:+10870667 None:intergenic
AAGAGAGAGAAAATTTCAGG+AGG 0.637039 6_3:-10874055 Msa0939000:CDS
CAAACTTCTAAGATTGCTGA+AGG 0.639219 6_3:-10873046 Msa0939000:CDS
TGCAGAAGCCAGGCTTGCTG+AGG 0.640040 6_3:-10876073 Msa0939000:CDS
CATTTGCGGAACACAGACAC+AGG 0.642105 6_3:+10873610 None:intergenic
AGCTTCTGGTGGTAAACAGG+AGG 0.643491 6_3:-10871299 Msa0939000:CDS
CCGATAACATTGCCAGAGAG+GGG 0.644054 6_3:-10873366 Msa0939000:CDS
AGAAGCGTTACAACCTCAGG+CGG 0.644751 6_3:-10872919 Msa0939000:CDS
ACCTGACAGTAAAGAGTGTG+GGG 0.645197 6_3:-10873716 Msa0939000:CDS
TGGTGCTACAACCAACTCTG+TGG 0.647168 6_3:-10871038 Msa0939000:CDS
AGGAGTGGGAGAGGAAGCTA+CGG 0.647313 6_3:-10875806 Msa0939000:CDS
GACGTTGAAAATGAGGACGA+GGG 0.648902 6_3:-10870956 Msa0939000:CDS
ACTAAACCAACGATTAATTG+CGG 0.654035 6_3:-10878790 Msa0939000:five_prime_UTR
ACGTTGAAAATGAGGACGAG+GGG 0.656363 6_3:-10870955 Msa0939000:CDS
AGGTTGGTCGACAAAGACCT+GGG 0.661364 6_3:-10873252 Msa0939000:CDS
TTACCTGACAGTAAAGAGTG+TGG 0.661921 6_3:-10873718 Msa0939000:CDS
ACGACAAATAGCAGATGGAG+TGG 0.664564 6_3:-10873422 Msa0939000:CDS
TACCGGCGATGATGTTGTGG+TGG 0.665593 6_3:-10878507 Msa0939000:CDS
TTATGATTATCAGTACAACA+TGG 0.667050 6_3:-10877372 Msa0939000:CDS
AATCTTCATGCATCTCACGT+TGG 0.667214 6_3:+10873893 None:intergenic
GTGTAGCACTTTCTTCAATG+CGG 0.671316 6_3:+10871014 None:intergenic
TTGAGTTTAGAAAAGCAGTG+TGG 0.671606 6_3:-10877194 Msa0939000:CDS
ATGGGAAGAAGACTGGACTT+CGG 0.672228 6_3:+10876173 None:intergenic
AGTCAACCATAGGGAAACCA+AGG 0.673395 6_3:-10874808 Msa0939000:CDS
AGGCACAGTTTCATCAACAC+AGG 0.676532 6_3:-10871356 Msa0939000:CDS
CAGAATGCTGCTGATAGTGA+AGG 0.678423 6_3:-10873019 Msa0939000:CDS
AACATTTACATCAGACTCAG+GGG 0.678589 6_3:+10873513 None:intergenic
CAGGAATTGCAAGGACTGTG+GGG 0.681894 6_3:-10873776 Msa0939000:CDS
AGAACTAGCTGAAACTCAGG+AGG 0.683450 6_3:-10877294 Msa0939000:CDS
GCTACATGGAAAGTTTGACA+GGG 0.685346 6_3:-10873309 Msa0939000:CDS
TACATGGAAAGTTTGACAGG+GGG 0.687457 6_3:-10873307 Msa0939000:CDS
AAAGCGGAAATCTCTCGCTG+AGG 0.695563 6_3:-10874874 Msa0939000:CDS
AATGTACTGCTTAGGCACAG+AGG 0.697733 6_3:-10870653 Msa0939000:three_prime_UTR
TCTATATTAGGAGATGACAC+AGG 0.699986 6_3:+10873469 None:intergenic
GGAGGAGGAGGATCCCGGTG+AGG 0.700171 6_3:-10870909 Msa0939000:CDS
TGAGGAGTTTAGCAGCAAGG+AGG 0.705004 6_3:-10874856 Msa0939000:CDS
CAGACAGTACAACAGCTGGT+GGG 0.705347 6_3:-10872991 Msa0939000:CDS
CGTTGAAAATGAGGACGAGG+GGG 0.709289 6_3:-10870954 Msa0939000:CDS
AGAGACAATGTTGATGACAA+TGG 0.709550 6_3:-10871058 Msa0939000:CDS
GTATCAGTCAAAGAACCCAA+CGG 0.709802 6_3:+10878527 None:intergenic
GGGAAGAAGTCAAGTCTGAG+GGG 0.719282 6_3:-10873975 Msa0939000:CDS
TCCACCCACACAAGTTACAG+GGG 0.722043 6_3:-10872942 Msa0939000:CDS
CTACATGGAAAGTTTGACAG+GGG 0.722540 6_3:-10873308 Msa0939000:CDS
TCAGTCAAAGAACCCAACGG+CGG 0.753226 6_3:+10878530 None:intergenic
TTGGTCGACAAAGACCTGGG+AGG 0.780419 6_3:-10873249 Msa0939000:CDS
GGTGTGGCACCAATTCGACG+CGG 0.794836 6_3:+10878605 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTTGTTTTGAA+TGG - chr6_3:10871021-10871040 Msa0939000:CDS 10.0%
!!! ATTCTGTTTTTTTTTTTTTT+TGG - chr6_3:10871092-10871111 Msa0939000:intron 10.0%
!!! TTTTACAGATTATAATTTAA+AGG + chr6_3:10871849-10871868 None:intergenic 10.0%
!!! CATAATTGAATTTTAAATAT+TGG - chr6_3:10872803-10872822 Msa0939000:intron 10.0%
!! TAATTCTTTATTAAAAGAAA+AGG - chr6_3:10873719-10873738 Msa0939000:CDS 10.0%
!!! TAAAGGTAAAAATATTTTTT+TGG - chr6_3:10878657-10878676 Msa0939000:CDS 10.0%
!!! TTTTTTTTTGGTTTTATAGA+TGG - chr6_3:10871104-10871123 Msa0939000:intron 15.0%
!!! TTAGATAAGTTGTTTTTTTT+TGG - chr6_3:10871359-10871378 Msa0939000:CDS 15.0%
!! TTAAAAGAAATGTCAATATA+CGG - chr6_3:10871796-10871815 Msa0939000:intron 15.0%
!! TAATCTGTAAAATAATTTCA+TGG - chr6_3:10871857-10871876 Msa0939000:intron 15.0%
!! TTAATCTTGTATAAAAAATG+TGG - chr6_3:10872640-10872659 Msa0939000:intron 15.0%
!!! AATTTTAAATATTGGATATC+CGG - chr6_3:10872811-10872830 Msa0939000:intron 15.0%
!! TATTCATAAAACTTAAAACA+AGG + chr6_3:10873425-10873444 None:intergenic 15.0%
!! TAAAATTATATTATTTGGAC+TGG + chr6_3:10874096-10874115 None:intergenic 15.0%
!!! TTAGTTTTTTGAAATTTACT+TGG - chr6_3:10874187-10874206 Msa0939000:CDS 15.0%
!! AATGTTAATATAGAAAAAGT+AGG - chr6_3:10875875-10875894 Msa0939000:intron 15.0%
!!! TGTTTTATATATAGATAGAT+TGG - chr6_3:10876654-10876673 Msa0939000:intron 15.0%
!!! ACTTTTCTTTATTTCTTATT+GGG + chr6_3:10876839-10876858 None:intergenic 15.0%
!!! AACTTTTCTTTATTTCTTAT+TGG + chr6_3:10876840-10876859 None:intergenic 15.0%
!!! TTAATTTTGGATTTTTTTAC+TGG - chr6_3:10877576-10877595 Msa0939000:intron 15.0%
!!! TAATTTTGGATTTTTTTACT+GGG - chr6_3:10877577-10877596 Msa0939000:intron 15.0%
!!! GATTTGAGATTTATTAATAA+AGG - chr6_3:10878640-10878659 Msa0939000:CDS 15.0%
!!! TTTTATAGATGGTTTTTCTA+GGG - chr6_3:10871115-10871134 Msa0939000:intron 20.0%
!!! GTTTTTTGTGAATTAGATAA+CGG - chr6_3:10871381-10871400 Msa0939000:intron 20.0%
!!! TTTTTTGTGAATTAGATAAC+GGG - chr6_3:10871382-10871401 Msa0939000:intron 20.0%
!!! GTTATTGTAACAAGTTATTT+TGG - chr6_3:10871908-10871927 Msa0939000:intron 20.0%
!! ATTAACAATTGATTAACTTC+TGG - chr6_3:10871953-10871972 Msa0939000:intron 20.0%
!!! CTTTGTTTTTCTTTTTACAT+TGG - chr6_3:10872290-10872309 Msa0939000:intron 20.0%
!! TTATATCTATCTAATCATAG+GGG + chr6_3:10872875-10872894 None:intergenic 20.0%
!! CTTATATCTATCTAATCATA+GGG + chr6_3:10872876-10872895 None:intergenic 20.0%
!! ACTTATATCTATCTAATCAT+AGG + chr6_3:10872877-10872896 None:intergenic 20.0%
!!! ATTGCTTTCATTTGATTTTA+AGG - chr6_3:10873072-10873091 Msa0939000:CDS 20.0%
!! ATTTCACTTTATACTGTTTA+TGG - chr6_3:10873119-10873138 Msa0939000:CDS 20.0%
!!! CAAATTACAAGTTTTACAAA+AGG + chr6_3:10873828-10873847 None:intergenic 20.0%
!!! AGCTATTACTTTTAAACTAT+CGG + chr6_3:10874216-10874235 None:intergenic 20.0%
!!! AAGTTATGTAAATTTGCTTT+CGG + chr6_3:10874333-10874352 None:intergenic 20.0%
!! TATGGAAGATAATTTAAAGA+AGG - chr6_3:10875109-10875128 Msa0939000:intron 20.0%
!! TGAAAAGGTAAAAAATGAAA+AGG - chr6_3:10875202-10875221 Msa0939000:intron 20.0%
!! TATATTGGCATTAATTCTAA+AGG - chr6_3:10876598-10876617 Msa0939000:intron 20.0%
!! TAAGAAATAAAGAAAAGTTG+TGG - chr6_3:10876841-10876860 Msa0939000:intron 20.0%
!!! TTTTTTTTGTTGCAAAAGTT+TGG - chr6_3:10877010-10877029 Msa0939000:intron 20.0%
!!! ACAATTTTCTTACAAATCTT+GGG + chr6_3:10877299-10877318 None:intergenic 20.0%
!!! TACAATTTTCTTACAAATCT+TGG + chr6_3:10877300-10877319 None:intergenic 20.0%
!! AGATTTGTAAGAAAATTGTA+TGG - chr6_3:10877300-10877319 Msa0939000:CDS 20.0%
!!! AGTTCTAAAACTTACTATTT+TGG - chr6_3:10877371-10877390 Msa0939000:CDS 20.0%
!! TGCTAGATTGATTATTTATA+TGG - chr6_3:10877409-10877428 Msa0939000:intron 20.0%
!!! TTTGTATAGTTTTTTGATTG+AGG - chr6_3:10877541-10877560 Msa0939000:intron 20.0%
!!! TTGTATAGTTTTTTGATTGA+GGG - chr6_3:10877542-10877561 Msa0939000:intron 20.0%
!!! GGCATTTGAATTATTAATTT+TGG - chr6_3:10877563-10877582 Msa0939000:intron 20.0%
!! AGTAAGATATTCTGTATTAT+TGG + chr6_3:10877648-10877667 None:intergenic 20.0%
!! ATTAAATCAACCATCAATAA+AGG + chr6_3:10878227-10878246 None:intergenic 20.0%
!!! TTATTGATGGTTGATTTAAT+TGG - chr6_3:10878227-10878246 Msa0939000:intron 20.0%
!!! TTGTTTTGAATGGTTTTTCT+AGG - chr6_3:10871031-10871050 Msa0939000:CDS 25.0%
!!! TGTTTTGAATGGTTTTTCTA+GGG - chr6_3:10871032-10871051 Msa0939000:CDS 25.0%
!! GTTTTATAGATGGTTTTTCT+AGG - chr6_3:10871114-10871133 Msa0939000:intron 25.0%
! TAGATATTACTGTAACTTTG+AGG - chr6_3:10871215-10871234 Msa0939000:CDS 25.0%
!! TAATTTGCATTTGTTAGTTG+TGG - chr6_3:10871419-10871438 Msa0939000:intron 25.0%
! AATATTGTCATGATATTGCA+AGG - chr6_3:10871734-10871753 Msa0939000:intron 25.0%
! TTATGATTATCAGTACAACA+TGG - chr6_3:10871999-10872018 Msa0939000:intron 25.0%
! TATGATTATCAGTACAACAT+GGG - chr6_3:10872000-10872019 Msa0939000:intron 25.0%
! AGTCTATAATTGTGTTGAAT+TGG - chr6_3:10872235-10872254 Msa0939000:intron 25.0%
!!! CTTTTTACATTGGTTAGTAT+TGG - chr6_3:10872300-10872319 Msa0939000:intron 25.0%
! ATAGTTCATAGTGATGTTAA+AGG + chr6_3:10872396-10872415 None:intergenic 25.0%
!! TTACAAAAAATTTTGTGCAC+CGG - chr6_3:10872758-10872777 Msa0939000:intron 25.0%
! CTTTAGTCAAATTACTTCTT+AGG - chr6_3:10872846-10872865 Msa0939000:intron 25.0%
! ATGAAAAGACAACCAATTAA+TGG + chr6_3:10872967-10872986 None:intergenic 25.0%
!!! TTCATTGTGTTTGCTATTTT+AGG - chr6_3:10872982-10873001 Msa0939000:CDS 25.0%
! AAACACAAGACTAAATATGA+TGG + chr6_3:10873455-10873474 None:intergenic 25.0%
! AATCAGTATTCTACAAACAA+AGG - chr6_3:10873532-10873551 Msa0939000:CDS 25.0%
! ATCAGTATTCTACAAACAAA+GGG - chr6_3:10873533-10873552 Msa0939000:CDS 25.0%
!!! GTAAAACTTGTAATTTGCTT+TGG - chr6_3:10873831-10873850 Msa0939000:CDS 25.0%
!!! TTTTGGTCTTTCCATATTTA+TGG - chr6_3:10873854-10873873 Msa0939000:CDS 25.0%
! TCATAACCATACCATAAATA+TGG + chr6_3:10873868-10873887 None:intergenic 25.0%
! TTAAAAATAATCACCACTTG+TGG - chr6_3:10874244-10874263 Msa0939000:CDS 25.0%
! ATTATATATCACAGGACTAT+GGG + chr6_3:10874303-10874322 None:intergenic 25.0%
! GAAAACACATTATATATCAC+AGG + chr6_3:10874311-10874330 None:intergenic 25.0%
! CTTGTACATATATTTCTTAC+AGG - chr6_3:10874395-10874414 Msa0939000:CDS 25.0%
! TACATATATTTCTTACAGGA+AGG - chr6_3:10874399-10874418 Msa0939000:CDS 25.0%
! ACATATATTTCTTACAGGAA+GGG - chr6_3:10874400-10874419 Msa0939000:CDS 25.0%
! AACAAAGTTGAAATCATTGA+AGG - chr6_3:10874653-10874672 Msa0939000:CDS 25.0%
! AGAATTTAAATGCTGAACTT+GGG - chr6_3:10874757-10874776 Msa0939000:CDS 25.0%
! GCAGAAAGATTTAATTATGA+AGG - chr6_3:10874917-10874936 Msa0939000:CDS 25.0%
! TAGTGATTCAATTAAACAAG+AGG - chr6_3:10875166-10875185 Msa0939000:intron 25.0%
!! GGAATTTCTTTTATCTGAAA+AGG - chr6_3:10875187-10875206 Msa0939000:intron 25.0%
!! AAAAAATGAAAAGGCACAAA+TGG - chr6_3:10875211-10875230 Msa0939000:intron 25.0%
!! AAATGGTTCAAGATTTTGAA+TGG - chr6_3:10875228-10875247 Msa0939000:intron 25.0%
! TTGAGAATGAAATTCAGAAA+AGG - chr6_3:10875264-10875283 Msa0939000:intron 25.0%
!!! CTGGTTGTATTTATTTTTTG+CGG - chr6_3:10876557-10876576 Msa0939000:intron 25.0%
!! GTTTTCTTGGATGTTTATAT+TGG - chr6_3:10876583-10876602 Msa0939000:intron 25.0%
!! TTTATTTCTTATTGGGAAGA+GGG + chr6_3:10876832-10876851 None:intergenic 25.0%
! ACTATATTAGAAACTGAAAG+GGG + chr6_3:10876908-10876927 None:intergenic 25.0%
! CACTATATTAGAAACTGAAA+GGG + chr6_3:10876909-10876928 None:intergenic 25.0%
! ACACTATATTAGAAACTGAA+AGG + chr6_3:10876910-10876929 None:intergenic 25.0%
! AAGTCATCTGAATTGATTAT+TGG - chr6_3:10876941-10876960 Msa0939000:intron 25.0%
! AGTCATCTGAATTGATTATT+GGG - chr6_3:10876942-10876961 Msa0939000:intron 25.0%
! TTTGCAACAAAAAAAAAAGC+AGG + chr6_3:10877006-10877025 None:intergenic 25.0%
! TAATAATTATTACGTTCCCA+CGG - chr6_3:10877034-10877053 Msa0939000:intron 25.0%
! TTGGCTAAATCAATTAACAT+AGG + chr6_3:10877175-10877194 None:intergenic 25.0%
! TTGACTAATCAATTAACAGT+TGG + chr6_3:10877194-10877213 None:intergenic 25.0%
! TACAAATCTTGGGATAATTT+GGG + chr6_3:10877289-10877308 None:intergenic 25.0%
! TTACAAATCTTGGGATAATT+TGG + chr6_3:10877290-10877309 None:intergenic 25.0%
! AGAAAATTGTATGGTTACAA+CGG - chr6_3:10877309-10877328 Msa0939000:CDS 25.0%
! AATATCTTACTGTGTGTAAT+AGG - chr6_3:10877657-10877676 Msa0939000:intron 25.0%
! CATTAAATAGTTTCTCAATC+GGG + chr6_3:10877697-10877716 None:intergenic 25.0%
! GCATTAAATAGTTTCTCAAT+CGG + chr6_3:10877698-10877717 None:intergenic 25.0%
! ATTGAGAAACTATTTAATGC+AGG - chr6_3:10877698-10877717 Msa0939000:intron 25.0%
! TATTATTTGTGTCTTTCATG+TGG - chr6_3:10877737-10877756 Msa0939000:intron 25.0%
! TTGGTATTTCAAACTGTAAA+AGG + chr6_3:10878294-10878313 None:intergenic 25.0%
! TTAACCCAAAGATTAGATTA+TGG + chr6_3:10878601-10878620 None:intergenic 25.0%
! TCAAATCTCAAAAGAAAACA+TGG + chr6_3:10878627-10878646 None:intergenic 25.0%
!! ATTTTCCATTCTAATGCTAA+TGG - chr6_3:10878741-10878760 Msa0939000:five_prime_UTR 25.0%
! ATTATCCATTAGCATTAGAA+TGG + chr6_3:10878749-10878768 None:intergenic 25.0%
ACTAAACCAACGATTAATTG+CGG - chr6_3:10870581-10870600 Msa0939000:three_prime_UTR 30.0%
! TACCTTGAATTCATCTTTTC+CGG - chr6_3:10870663-10870682 Msa0939000:three_prime_UTR 30.0%
!!! TTTCTAGGGTATGTTTTTCT+AGG - chr6_3:10871129-10871148 Msa0939000:intron 30.0%
CATCAATATGCTACAAAACT+CGG + chr6_3:10871192-10871211 None:intergenic 30.0%
TTGAAGACTATAAACATGTC+TGG - chr6_3:10871272-10871291 Msa0939000:CDS 30.0%
TATTCGACTCTGATACATAT+CGG + chr6_3:10871301-10871320 None:intergenic 30.0%
ATATGTATCAGAGTCGAATA+CGG - chr6_3:10871301-10871320 Msa0939000:CDS 30.0%
TGTTGTTACTATTGAGTTTG+AGG - chr6_3:10871449-10871468 Msa0939000:intron 30.0%
ACTATTGAGTTTGAGGAATT+AGG - chr6_3:10871456-10871475 Msa0939000:intron 30.0%
!! CAATAGTTTTGCGAGTATTT+AGG - chr6_3:10871516-10871535 Msa0939000:intron 30.0%
AAAATTCAAGGAAATAACCC+AGG + chr6_3:10871661-10871680 None:intergenic 30.0%
GAAATTGAATCACATGGTTT+AGG + chr6_3:10871685-10871704 None:intergenic 30.0%
AACTTCTCATTATTCTACAG+TGG + chr6_3:10871778-10871797 None:intergenic 30.0%
AAAGAAATGTCAATATACGG+TGG - chr6_3:10871799-10871818 Msa0939000:intron 30.0%
TACTGATAATCATAAAGCTG+CGG + chr6_3:10871994-10872013 None:intergenic 30.0%
! TCAAATTTTCCTCTCGTTTT+TGG + chr6_3:10872149-10872168 None:intergenic 30.0%
AAAAACGAGAGGAAAATTTG+AGG - chr6_3:10872148-10872167 Msa0939000:intron 30.0%
ATAGTGATGTTAAAGGAACA+GGG + chr6_3:10872389-10872408 None:intergenic 30.0%
TGTAAAAACATCGTATATGC+TGG - chr6_3:10872568-10872587 Msa0939000:intron 30.0%
ATGTCAAGGACAAAAATGTA+GGG + chr6_3:10872609-10872628 None:intergenic 30.0%
ATGTGGAAATGTAATTGCTT+TGG - chr6_3:10872657-10872676 Msa0939000:intron 30.0%
TTCCAACAAAAACACATGTT+TGG - chr6_3:10872704-10872723 Msa0939000:intron 30.0%
! ACTAAAGTATCAAGTATGAC+CGG + chr6_3:10872833-10872852 None:intergenic 30.0%
GTATCATTGCAGTATATAAC+AGG + chr6_3:10872916-10872935 None:intergenic 30.0%
!! TTTTAGGTGTTCATCTTGAA+TGG - chr6_3:10872998-10873017 Msa0939000:CDS 30.0%
AAACTCTGATAAAAGTCTCA+AGG + chr6_3:10873046-10873065 None:intergenic 30.0%
! AGACTTTTATCAGAGTTTTG+AGG - chr6_3:10873048-10873067 Msa0939000:CDS 30.0%
!! TGCTTTATCTAGCTTTGTAT+GGG + chr6_3:10873219-10873238 None:intergenic 30.0%
!! TTGCTTTATCTAGCTTTGTA+TGG + chr6_3:10873220-10873239 None:intergenic 30.0%
GCTAGATAAAGCAAATGAAT+TGG - chr6_3:10873226-10873245 Msa0939000:CDS 30.0%
AGATAAAGCAAATGAATTGG+TGG - chr6_3:10873229-10873248 Msa0939000:CDS 30.0%
GTGACTCAATTAATTGAAGT+TGG - chr6_3:10873476-10873495 Msa0939000:CDS 30.0%
!!! CTTGTAATTTGCTTTGGTTT+TGG - chr6_3:10873837-10873856 Msa0939000:CDS 30.0%
GTCTTTCCATATTTATGGTA+TGG - chr6_3:10873859-10873878 Msa0939000:CDS 30.0%
AGAGAAAGAATTACATGAAC+TGG - chr6_3:10873929-10873948 Msa0939000:CDS 30.0%
!! ATTATTTGGACTGGTTTGTT+TGG + chr6_3:10874087-10874106 None:intergenic 30.0%
!! AGTTGATTTGGTTTGAGTTT+GGG + chr6_3:10874125-10874144 None:intergenic 30.0%
ATTCAATTTCTTTCCACAAG+TGG + chr6_3:10874260-10874279 None:intergenic 30.0%
CATTATATATCACAGGACTA+TGG + chr6_3:10874304-10874323 None:intergenic 30.0%
AAAGTTGAAATCATTGAAGG+AGG - chr6_3:10874656-10874675 Msa0939000:CDS 30.0%
GAGAATTTAAATGCTGAACT+TGG - chr6_3:10874756-10874775 Msa0939000:CDS 30.0%
TGAAATTCAGAAAAGGAAAG+AGG - chr6_3:10875271-10875290 Msa0939000:intron 30.0%
TAGAATCTGTGTTAGTACTA+GGG + chr6_3:10875811-10875830 None:intergenic 30.0%
ATAGAATCTGTGTTAGTACT+AGG + chr6_3:10875812-10875831 None:intergenic 30.0%
AGTACTAACACAGATTCTAT+TGG - chr6_3:10875812-10875831 Msa0939000:CDS 30.0%
ATTGGTACTTCAAATATAGC+TGG - chr6_3:10875830-10875849 Msa0939000:CDS 30.0%
TTGGTACTTCAAATATAGCT+GGG - chr6_3:10875831-10875850 Msa0939000:CDS 30.0%
TAACATTTACATCAGACTCA+GGG + chr6_3:10875862-10875881 None:intergenic 30.0%
TTAACATTTACATCAGACTC+AGG + chr6_3:10875863-10875882 None:intergenic 30.0%
!!! TTTTTTGCGGATTGTTTTCT+TGG - chr6_3:10876570-10876589 Msa0939000:intron 30.0%
! CTTGCTAATTTTCACACTAA+AGG - chr6_3:10876679-10876698 Msa0939000:intron 30.0%
! TTATTTCTTATTGGGAAGAG+GGG + chr6_3:10876831-10876850 None:intergenic 30.0%
! CTTTATTTCTTATTGGGAAG+AGG + chr6_3:10876833-10876852 None:intergenic 30.0%
CTATATTAGAAACTGAAAGG+GGG + chr6_3:10876907-10876926 None:intergenic 30.0%
AATAATTATTACGTTCCCAC+GGG - chr6_3:10877035-10877054 Msa0939000:intron 30.0%
! TCTTTTATAAAAGTGAGGTG+TGG - chr6_3:10877058-10877077 Msa0939000:intron 30.0%
GTCTTCTTGTGTTTATTACA+AGG + chr6_3:10877112-10877131 None:intergenic 30.0%
!! AGTGTATGTTTAGTTTGCAA+TGG - chr6_3:10877243-10877262 Msa0939000:CDS 30.0%
ACTATACAAACTAGATAACC+AGG + chr6_3:10877531-10877550 None:intergenic 30.0%
!!! TTTTTTACTGGGTTATCTGA+AGG - chr6_3:10877588-10877607 Msa0939000:intron 30.0%
AGGCATAACATTCTATCAAA+CGG + chr6_3:10877917-10877936 None:intergenic 30.0%
AATCAGTCTTCCTTTATTGA+TGG - chr6_3:10878214-10878233 Msa0939000:intron 30.0%
! CATCCTCATTCCTTTTAAAT+AGG - chr6_3:10878568-10878587 Msa0939000:CDS 30.0%
TCTCCTATTTAAAAGGAATG+AGG + chr6_3:10878574-10878593 None:intergenic 30.0%
AGTAGCCATAATCTAATCTT+TGG - chr6_3:10878593-10878612 Msa0939000:CDS 30.0%
GTAGCCATAATCTAATCTTT+GGG - chr6_3:10878594-10878613 Msa0939000:CDS 30.0%
GCAAATTAAATGTACTGCTT+AGG - chr6_3:10878710-10878729 Msa0939000:five_prime_UTR 30.0%
AAATCACCGCAATTAATCGT+TGG + chr6_3:10870590-10870609 None:intergenic 35.0%
! CGAGTGTTTGATATCTTTTC+CGG - chr6_3:10870616-10870635 Msa0939000:three_prime_UTR 35.0%
GGTATCAAACACTCGATTTA+GGG + chr6_3:10870647-10870666 None:intergenic 35.0%
AGGTATCAAACACTCGATTT+AGG + chr6_3:10870648-10870667 None:intergenic 35.0%
! CTTCTAGTTATGCTGAAGAT+TGG - chr6_3:10870887-10870906 Msa0939000:CDS 35.0%
!! GGGTATGTTTTTCTAGGAAT+TGG - chr6_3:10871135-10871154 Msa0939000:intron 35.0%
!! TTTTTCTAGGAATTGGTCTC+CGG - chr6_3:10871142-10871161 Msa0939000:intron 35.0%
CTCGCAAAACTATTGACAAA+TGG + chr6_3:10871511-10871530 None:intergenic 35.0%
! AGTTTTGCGAGTATTTAGGA+TGG - chr6_3:10871520-10871539 Msa0939000:intron 35.0%
!! GTTTTGCGAGTATTTAGGAT+GGG - chr6_3:10871521-10871540 Msa0939000:intron 35.0%
!! TTTTGCGAGTATTTAGGATG+GGG - chr6_3:10871522-10871541 Msa0939000:intron 35.0%
! GGGGATATATTCTCTTTTGT+CGG - chr6_3:10871541-10871560 Msa0939000:intron 35.0%
! TATTCTCTTTTGTCGGAACT+AGG - chr6_3:10871548-10871567 Msa0939000:intron 35.0%
CATGGTTTAGGCAAAATTCA+AGG + chr6_3:10871673-10871692 None:intergenic 35.0%
GCAAGAGAAATTGAATCACA+TGG + chr6_3:10871691-10871710 None:intergenic 35.0%
ATTGCAAGGAAATCTTACCA+AGG - chr6_3:10871748-10871767 Msa0939000:intron 35.0%
TATTCTACAGTGGTAATCCT+TGG + chr6_3:10871768-10871787 None:intergenic 35.0%
TAATCATCGACAAAGTAACG+TGG + chr6_3:10871937-10871956 None:intergenic 35.0%
ACTCTTGCTTCTCAATAAGA+AGG + chr6_3:10872029-10872048 None:intergenic 35.0%
TTCTTATTGAGAAGCAAGAG+TGG - chr6_3:10872028-10872047 Msa0939000:intron 35.0%
TTGAGTTTAGAAAAGCAGTG+TGG - chr6_3:10872177-10872196 Msa0939000:intron 35.0%
GTATTGGATACGTTGATCAT+AGG - chr6_3:10872316-10872335 Msa0939000:intron 35.0%
!! TTGATCATAGGCTTTGAACT+GGG - chr6_3:10872328-10872347 Msa0939000:intron 35.0%
TAGTGATGTTAAAGGAACAG+GGG + chr6_3:10872388-10872407 None:intergenic 35.0%
CATAGTGATGTTAAAGGAAC+AGG + chr6_3:10872390-10872409 None:intergenic 35.0%
GATGTCAAGGACAAAAATGT+AGG + chr6_3:10872610-10872629 None:intergenic 35.0%
! TTTTTGTCCTTGACATCATC+AGG - chr6_3:10872613-10872632 Msa0939000:intron 35.0%
!! CTCCAAACATGTGTTTTTGT+TGG + chr6_3:10872709-10872728 None:intergenic 35.0%
CAACAAAAACACATGTTTGG+AGG - chr6_3:10872707-10872726 Msa0939000:intron 35.0%
CAAGTATAATGCCCTTTGTA+CGG + chr6_3:10872736-10872755 None:intergenic 35.0%
TCTCGATTATGCATTCTAAC+CGG + chr6_3:10872780-10872799 None:intergenic 35.0%
CTTTAGTCAAACTACTTCCT+AGG - chr6_3:10872935-10872954 Msa0939000:CDS 35.0%
AAAGCAAATGAATTGGTGGA+TGG - chr6_3:10873233-10873252 Msa0939000:CDS 35.0%
! TCGTGAAAGTTTGCTTCAAA+AGG - chr6_3:10873370-10873389 Msa0939000:CDS 35.0%
! AAAGTTTGCTTCAAAAGGAG+CGG - chr6_3:10873375-10873394 Msa0939000:CDS 35.0%
CTTAAAACAAGGTCCATACT+CGG + chr6_3:10873414-10873433 None:intergenic 35.0%
CAAACAAAGGGAAGATTTGA+AGG - chr6_3:10873545-10873564 Msa0939000:CDS 35.0%
ATGGTTATGATTGCAGAAAG+TGG - chr6_3:10873878-10873897 Msa0939000:CDS 35.0%
!! GAGTTGATTTGGTTTGAGTT+TGG + chr6_3:10874126-10874145 None:intergenic 35.0%
!! ATATTGACCTCAAAGGTACT+AGG + chr6_3:10874162-10874181 None:intergenic 35.0%
!! TAGTACCTTTGAGGTCAATA+TGG - chr6_3:10874161-10874180 Msa0939000:CDS 35.0%
AATCACCATATTGACCTCAA+AGG + chr6_3:10874169-10874188 None:intergenic 35.0%
TTTGCTCATCAAGAAGTTTC+TGG + chr6_3:10874428-10874447 None:intergenic 35.0%
TGATGAGCAAAAACATACTC+TGG - chr6_3:10874437-10874456 Msa0939000:CDS 35.0%
AGCTTGAAATGGAACAAAAG+CGG - chr6_3:10874481-10874500 Msa0939000:CDS 35.0%
TACGAAGTCTGAGAGAATAA+AGG - chr6_3:10874611-10874630 Msa0939000:CDS 35.0%
GAGAATAAAGGAGCAAGATA+AGG - chr6_3:10874623-10874642 Msa0939000:CDS 35.0%
GAAAATAAAAGAGAGAGAGC+TGG - chr6_3:10874692-10874711 Msa0939000:CDS 35.0%
TTTGCAATTGGAACTAAAGC+AGG - chr6_3:10874875-10874894 Msa0939000:CDS 35.0%
GCTTAGGTTTGAGAAAGAAT+GGG - chr6_3:10874965-10874984 Msa0939000:intron 35.0%
TGAAGAACAGTGAAGAAGAA+AGG - chr6_3:10875066-10875085 Msa0939000:intron 35.0%
GAAAAGAGAGAAGCAAGATA+TGG - chr6_3:10875091-10875110 Msa0939000:intron 35.0%
GGAAAGAGAGAGAAAATTTC+AGG - chr6_3:10875313-10875332 Msa0939000:intron 35.0%
AAGAGAGAGAAAATTTCAGG+AGG - chr6_3:10875316-10875335 Msa0939000:intron 35.0%
CACGTTCTTTCTTTACTTTC+TGG + chr6_3:10875526-10875545 None:intergenic 35.0%
CAAACCATTCTGGATCTAAA+TGG - chr6_3:10875738-10875757 Msa0939000:CDS 35.0%
AGGGGATAAACTGAAAATCT+TGG + chr6_3:10875792-10875811 None:intergenic 35.0%
AGAATCTGTGTTAGTACTAG+GGG + chr6_3:10875810-10875829 None:intergenic 35.0%
AACATTTACATCAGACTCAG+GGG + chr6_3:10875861-10875880 None:intergenic 35.0%
TCTATATTAGGAGATGACAC+AGG + chr6_3:10875905-10875924 None:intergenic 35.0%
GTGTCATCTCCTAATATAGA+AGG - chr6_3:10875905-10875924 Msa0939000:intron 35.0%
ACTATCGGTCCTTCTATATT+AGG + chr6_3:10875917-10875936 None:intergenic 35.0%
CGTTCTTGAAGAGTAACTAT+CGG + chr6_3:10875932-10875951 None:intergenic 35.0%
!! TTTGCAAACTCGTTTTTCCT+AGG + chr6_3:10876213-10876232 None:intergenic 35.0%
!! CAAACTTCTAAGATTGCTGA+AGG - chr6_3:10876325-10876344 Msa0939000:intron 35.0%
TAAGACGTAAGTTTAGTCTC+AGG - chr6_3:10876477-10876496 Msa0939000:intron 35.0%
AAGACGTAAGTTTAGTCTCA+GGG - chr6_3:10876478-10876497 Msa0939000:intron 35.0%
TATTGTATCAGTGTACACAC+TGG - chr6_3:10876538-10876557 Msa0939000:intron 35.0%
! CACTTTTATAAAAGACCCGT+GGG + chr6_3:10877053-10877072 None:intergenic 35.0%
!! TCACTTTTATAAAAGACCCG+TGG + chr6_3:10877054-10877073 None:intergenic 35.0%
! ACGGGTCTTTTATAAAAGTG+AGG - chr6_3:10877053-10877072 Msa0939000:intron 35.0%
TATGATCTGCGGAGAAAATA+TGG + chr6_3:10877146-10877165 None:intergenic 35.0%
ATAGGAACAGTTATGATCTG+CGG + chr6_3:10877157-10877176 None:intergenic 35.0%
ATGGAAAAACTGCAAGTCTT+TGG - chr6_3:10877262-10877281 Msa0939000:CDS 35.0%
AAATACGACAACACCTAATG+CGG + chr6_3:10877349-10877368 None:intergenic 35.0%
AACTAGATAACCAGGATTGA+GGG + chr6_3:10877523-10877542 None:intergenic 35.0%
AAACTAGATAACCAGGATTG+AGG + chr6_3:10877524-10877543 None:intergenic 35.0%
! TTATCTGAAGGAAGTGCATT+TGG - chr6_3:10877600-10877619 Msa0939000:intron 35.0%
ATCTTACTGTGTGTAATAGG+AGG - chr6_3:10877660-10877679 Msa0939000:intron 35.0%
GAGAAACTATTTAATGCAGG+AGG - chr6_3:10877701-10877720 Msa0939000:intron 35.0%
!! TGACAGTTTTATGTTGACTG+TGG - chr6_3:10877861-10877880 Msa0939000:intron 35.0%
TTTGATCTCCACAGACTTTA+CGG + chr6_3:10878173-10878192 None:intergenic 35.0%
! TCAAAGATGATCGAGTTGTA+AGG - chr6_3:10878188-10878207 Msa0939000:intron 35.0%
! CAAAGATGATCGAGTTGTAA+GGG - chr6_3:10878189-10878208 Msa0939000:intron 35.0%
TTGTCATCAACATTGTCTCT+TGG + chr6_3:10878313-10878332 None:intergenic 35.0%
!! AGAGACAATGTTGATGACAA+TGG - chr6_3:10878313-10878332 Msa0939000:intron 35.0%
AGTCAATGACGTTGAAAATG+AGG - chr6_3:10878408-10878427 Msa0939000:CDS 35.0%
TGGCTACTCTCCTATTTAAA+AGG + chr6_3:10878581-10878600 None:intergenic 35.0%
!! CAGTACATTTAATTTGCCAG+AGG + chr6_3:10878707-10878726 None:intergenic 35.0%
! ATAGGTCGTGATTTTCTCTG+CGG + chr6_3:10870724-10870743 None:intergenic 40.0%
CAGAGAAAATCACGACCTAT+CGG - chr6_3:10870724-10870743 Msa0939000:three_prime_UTR 40.0%
GTATCAGTCAAAGAACCCAA+CGG + chr6_3:10870847-10870866 None:intergenic 40.0%
TTGGGTTCTTTGACTGATAC+CGG - chr6_3:10870847-10870866 Msa0939000:three_prime_UTR 40.0%
GTTATGCTGAAGATTGGAAG+AGG - chr6_3:10870893-10870912 Msa0939000:CDS 40.0%
TGGAAGAGGTTTAGAGAAGT+TGG - chr6_3:10870907-10870926 Msa0939000:CDS 40.0%
TTGATGAAGCGGTAATGAAG+AGG - chr6_3:10870935-10870954 Msa0939000:CDS 40.0%
GAAAGATGATGAAGCGATGT+TGG - chr6_3:10870957-10870976 Msa0939000:CDS 40.0%
CGTTCAAAAACCAACTCATC+CGG + chr6_3:10871164-10871183 None:intergenic 40.0%
!!! CGGATGAGTTGGTTTTTGAA+CGG - chr6_3:10871162-10871181 Msa0939000:intron 40.0%
!!! GGATGAGTTGGTTTTTGAAC+GGG - chr6_3:10871163-10871182 Msa0939000:intron 40.0%
GAGCTATAAGTAGAGAGAGA+TGG - chr6_3:10871583-10871602 Msa0939000:intron 40.0%
GTAGAGAGAGATGGTATGAA+AGG - chr6_3:10871592-10871611 Msa0939000:intron 40.0%
GGATAATCGAGAGAACTCTT+TGG - chr6_3:10871820-10871839 Msa0939000:intron 40.0%
!! GTTGATCATAGGCTTTGAAC+TGG - chr6_3:10872327-10872346 Msa0939000:intron 40.0%
CATAAGAAGACAAAACCCAG+AGG + chr6_3:10872474-10872493 None:intergenic 40.0%
! TAACGATCCTGATGATGTCA+AGG + chr6_3:10872623-10872642 None:intergenic 40.0%
TTTGGAGGATACCGTACAAA+GGG - chr6_3:10872722-10872741 Msa0939000:intron 40.0%
!! CGTACAAAGGGCATTATACT+TGG - chr6_3:10872734-10872753 Msa0939000:intron 40.0%
CCAATTAATGGCAGTTTCCT+AGG + chr6_3:10872955-10872974 None:intergenic 40.0%
CCTAGGAAACTGCCATTAAT+TGG - chr6_3:10872952-10872971 Msa0939000:CDS 40.0%
AAAGGGAAGATTTGAAGGAG+TGG - chr6_3:10873550-10873569 Msa0939000:CDS 40.0%
AAGGGAAGATTTGAAGGAGT+GGG - chr6_3:10873551-10873570 Msa0939000:CDS 40.0%
AGAGAGGATATGCTAAGTGA+TGG - chr6_3:10873591-10873610 Msa0939000:CDS 40.0%
AGGATATGCTAAGTGATGGT+AGG - chr6_3:10873595-10873614 Msa0939000:CDS 40.0%
AGTGATGGTAGGCAAAATCT+TGG - chr6_3:10873606-10873625 Msa0939000:CDS 40.0%
! AGAGAGAGATCTAGAAGTGT+TGG - chr6_3:10873677-10873696 Msa0939000:CDS 40.0%
AGATGTAGATGCAGAAGAGA+AGG - chr6_3:10873767-10873786 Msa0939000:CDS 40.0%
AAAGTGTGAGTACATGCACT+TGG - chr6_3:10873973-10873992 Msa0939000:CDS 40.0%
! CCATAACAATGGACTTGGAT+TGG + chr6_3:10874035-10874054 None:intergenic 40.0%
CCAATCCAAGTCCATTGTTA+TGG - chr6_3:10874032-10874051 Msa0939000:CDS 40.0%
! CCAAACCATAACAATGGACT+TGG + chr6_3:10874040-10874059 None:intergenic 40.0%
CCAAGTCCATTGTTATGGTT+TGG - chr6_3:10874037-10874056 Msa0939000:CDS 40.0%
GCAACTCCAAACCATAACAA+TGG + chr6_3:10874046-10874065 None:intergenic 40.0%
!! GGGGTGTTAATGAGTTGATT+TGG + chr6_3:10874137-10874156 None:intergenic 40.0%
TTCGATTTCCCTATACTCCA+AGG + chr6_3:10874544-10874563 None:intergenic 40.0%
GGAAATCGAAGTCAACCATA+GGG - chr6_3:10874554-10874573 Msa0939000:CDS 40.0%
! TTGCTCTTCTTTTCCAACCT+TGG + chr6_3:10874583-10874602 None:intergenic 40.0%
! AGGAGAAATTGCTTGCTGAT+CGG - chr6_3:10874724-10874743 Msa0939000:CDS 40.0%
GCTTCAAATTCTCAGTCTCT+TGG + chr6_3:10874824-10874843 None:intergenic 40.0%
TGAAGCTTACTCAAGATGAG+AGG - chr6_3:10874838-10874857 Msa0939000:CDS 40.0%
! AGAGCATTCTCGTTTGCAAT+TGG - chr6_3:10874863-10874882 Msa0939000:CDS 40.0%
TGAAGGAAGCTGAAAACTTG+AGG - chr6_3:10874934-10874953 Msa0939000:CDS 40.0%
GAAGGAAGCTGAAAACTTGA+GGG - chr6_3:10874935-10874954 Msa0939000:CDS 40.0%
GGCTTAGGTTTGAGAAAGAA+TGG - chr6_3:10874964-10874983 Msa0939000:intron 40.0%
TGAGAAAGAATGGGAAGAAC+TGG - chr6_3:10874974-10874993 Msa0939000:intron 40.0%
TGACATTAGTGCAGAACAAC+AGG - chr6_3:10875010-10875029 Msa0939000:intron 40.0%
AGAACAACAGGAAGTTGAGA+AGG - chr6_3:10875022-10875041 Msa0939000:intron 40.0%
GGAGCTTGAAAAGCTTGAAT+TGG - chr6_3:10875130-10875149 Msa0939000:intron 40.0%
TCAGAAAAGGAAAGAGGAGA+TGG - chr6_3:10875277-10875296 Msa0939000:intron 40.0%
! ATTTTCTCTCTCTTTCCTGC+AGG + chr6_3:10875310-10875329 None:intergenic 40.0%
GAGAAAATTTCAGGAGGAGA+TGG - chr6_3:10875322-10875341 Msa0939000:intron 40.0%
CTTGAAAGATGCTGCTGAAA+AGG - chr6_3:10875370-10875389 Msa0939000:intron 40.0%
AAGATGCTGCTGAAAAGGAA+TGG - chr6_3:10875375-10875394 Msa0939000:intron 40.0%
AGATGCTGCTGAAAAGGAAT+GGG - chr6_3:10875376-10875395 Msa0939000:intron 40.0%
AGGGGATCAGATTAGAGAAT+GGG - chr6_3:10875414-10875433 Msa0939000:intron 40.0%
AATCTTCATGCATCTCACGT+TGG + chr6_3:10875481-10875500 None:intergenic 40.0%
TTACCTGACAGTAAAGAGTG+TGG - chr6_3:10875653-10875672 Msa0939000:CDS 40.0%
! TACCTGACAGTAAAGAGTGT+GGG - chr6_3:10875654-10875673 Msa0939000:CDS 40.0%
ATCTCCTCTTGAGAACTCAA+AGG - chr6_3:10875694-10875713 Msa0939000:CDS 40.0%
! TTGTCCTTTGAGTTCTCAAG+AGG + chr6_3:10875701-10875720 None:intergenic 40.0%
AAGGACAATGTTATCGCTTC+TGG - chr6_3:10875713-10875732 Msa0939000:CDS 40.0%
AAATCTTGGACGTGCATTTG+CGG + chr6_3:10875778-10875797 None:intergenic 40.0%
CAAGAACGACAAATAGCAGA+TGG - chr6_3:10875944-10875963 Msa0939000:intron 40.0%
ATATTCAGTATTCCCCTCTC+TGG + chr6_3:10876020-10876039 None:intergenic 40.0%
CATGTAGCTGTGTTCATCTA+TGG + chr6_3:10876050-10876069 None:intergenic 40.0%
CATAGATGAACACAGCTACA+TGG - chr6_3:10876048-10876067 Msa0939000:CDS 40.0%
AGCTACATGGAAAGTTTGAC+AGG - chr6_3:10876061-10876080 Msa0939000:CDS 40.0%
GCTACATGGAAAGTTTGACA+GGG - chr6_3:10876062-10876081 Msa0939000:CDS 40.0%
CTACATGGAAAGTTTGACAG+GGG - chr6_3:10876063-10876082 Msa0939000:CDS 40.0%
TACATGGAAAGTTTGACAGG+GGG - chr6_3:10876064-10876083 Msa0939000:CDS 40.0%
ACTGACTGTTGAGAATCATC+TGG + chr6_3:10876094-10876113 None:intergenic 40.0%
! CGTTTTTCCTAGGAACTCAT+TGG + chr6_3:10876203-10876222 None:intergenic 40.0%
AAGCTACTGGTAACAGTACA+AGG - chr6_3:10876287-10876306 Msa0939000:intron 40.0%
AGACGTAAGTTTAGTCTCAG+GGG - chr6_3:10876479-10876498 Msa0939000:intron 40.0%
!! AAGCTTTATTGCCCCAAACA+AGG + chr6_3:10876505-10876524 None:intergenic 40.0%
CTGCGGAGAAAATATGGTTA+GGG + chr6_3:10877140-10877159 None:intergenic 40.0%
TCTGCGGAGAAAATATGGTT+AGG + chr6_3:10877141-10877160 None:intergenic 40.0%
AATCCAAACATACCCGCATT+AGG - chr6_3:10877333-10877352 Msa0939000:CDS 40.0%
AATACGACAACACCTAATGC+GGG + chr6_3:10877348-10877367 None:intergenic 40.0%
ACTAGATAACCAGGATTGAG+GGG + chr6_3:10877522-10877541 None:intergenic 40.0%
!! AAGTGCATTTGGCTTTACTG+TGG - chr6_3:10877611-10877630 Msa0939000:intron 40.0%
ACTGTGTGTAATAGGAGGAA+TGG - chr6_3:10877665-10877684 Msa0939000:intron 40.0%
TTTAATGCAGGAGGATGTCA+AGG - chr6_3:10877710-10877729 Msa0939000:intron 40.0%
TTAATGCAGGAGGATGTCAA+GGG - chr6_3:10877711-10877730 Msa0939000:intron 40.0%
TTAGCACCATGCATCATTGT+CGG - chr6_3:10877785-10877804 Msa0939000:intron 40.0%
! CCTTGGATAACTCCTGTTTT+AGG + chr6_3:10877891-10877910 None:intergenic 40.0%
CCTAAAACAGGAGTTATCCA+AGG - chr6_3:10877888-10877907 Msa0939000:intron 40.0%
ATTCTATCAAACGGCATCCT+TGG + chr6_3:10877908-10877927 None:intergenic 40.0%
GCTCTTGAAAAAGAAGCTTC+TGG - chr6_3:10878058-10878077 Msa0939000:intron 40.0%
CTTGAAAAAGAAGCTTCTGG+TGG - chr6_3:10878061-10878080 Msa0939000:intron 40.0%
TAAAAACCCTGAAGTAGCAG+TGG - chr6_3:10878102-10878121 Msa0939000:intron 40.0%
GTGTAGCACTTTCTTCAATG+CGG + chr6_3:10878360-10878379 None:intergenic 40.0%
!! CATTGAAGAAAGTGCTACAC+TGG - chr6_3:10878360-10878379 Msa0939000:intron 40.0%
!! CACTCGATTTAGGGTTTTGC+CGG + chr6_3:10870638-10870657 None:intergenic 45.0%
CGCCGGAAAAGATGAATTCA+AGG + chr6_3:10870668-10870687 None:intergenic 45.0%
! AACAGCTTTTCCCTTTGCGA+GGG + chr6_3:10870800-10870819 None:intergenic 45.0%
AGTTGGACTGCTTGATGAAG+CGG - chr6_3:10870924-10870943 Msa0939000:CDS 45.0%
GTTGGAGAAGATTTCGAGAC+TGG - chr6_3:10870975-10870994 Msa0939000:CDS 45.0%
GATTTCGAGACTGGAGAAAG+AGG - chr6_3:10870984-10871003 Msa0939000:CDS 45.0%
AGTCGAATACGGACACAACA+CGG - chr6_3:10871312-10871331 Msa0939000:CDS 45.0%
TGGTATGAAAGGAGTGAGCT+AGG - chr6_3:10871603-10871622 Msa0939000:intron 45.0%
GGTATGAAAGGAGTGAGCTA+GGG - chr6_3:10871604-10871623 Msa0939000:intron 45.0%
AAAGGAGTGAGCTAGGGAAT+TGG - chr6_3:10871610-10871629 Msa0939000:intron 45.0%
AAGGAGTGAGCTAGGGAATT+GGG - chr6_3:10871611-10871630 Msa0939000:intron 45.0%
AAATAACCCAGGCCCACAAA+AGG + chr6_3:10871650-10871669 None:intergenic 45.0%
AGTGGAGTTCCAAGTTCGAT+CGG - chr6_3:10872046-10872065 Msa0939000:intron 45.0%
GCAAGAACTAGCTGAAACTC+AGG - chr6_3:10872074-10872093 Msa0939000:intron 45.0%
AGAACTAGCTGAAACTCAGG+AGG - chr6_3:10872077-10872096 Msa0939000:intron 45.0%
! GTCTGAAGTCCAAAAACGAG+AGG - chr6_3:10872137-10872156 Msa0939000:intron 45.0%
CATCGTATATGCTGGAAGTC+TGG - chr6_3:10872576-10872595 Msa0939000:intron 45.0%
GTTTGGAGGATACCGTACAA+AGG - chr6_3:10872721-10872740 Msa0939000:intron 45.0%
ATGGGAAGAAGACTGGACTT+CGG + chr6_3:10873201-10873220 None:intergenic 45.0%
GCTTTGTATGGGAAGAAGAC+TGG + chr6_3:10873208-10873227 None:intergenic 45.0%
GGTGGATGGAATTGAAGAGA+AGG - chr6_3:10873247-10873266 Msa0939000:CDS 45.0%
AGATATGAAGTTGCGAGAGC+TGG - chr6_3:10873343-10873362 Msa0939000:CDS 45.0%
TTGTCAGTAGCTACCGAGTA+TGG - chr6_3:10873398-10873417 Msa0939000:CDS 45.0%
AAGATTTGAAGGAGTGGGAG+AGG - chr6_3:10873556-10873575 Msa0939000:CDS 45.0%
GGATTCTGCAAAGAAAACGC+TGG - chr6_3:10873899-10873918 Msa0939000:CDS 45.0%
GCATGTACTCACACTTTCTC+TGG + chr6_3:10873970-10873989 None:intergenic 45.0%
GCAGCAGTTTGAGCTTGAAA+TGG - chr6_3:10874470-10874489 Msa0939000:CDS 45.0%
GGGAAATCGAAGTCAACCAT+AGG - chr6_3:10874553-10874572 Msa0939000:CDS 45.0%
AGTCAACCATAGGGAAACCA+AGG - chr6_3:10874563-10874582 Msa0939000:CDS 45.0%
AACCATAGGGAAACCAAGGT+TGG - chr6_3:10874567-10874586 Msa0939000:CDS 45.0%
TTCCAACCTTGGTTTCCCTA+TGG + chr6_3:10874572-10874591 None:intergenic 45.0%
AAAAGAGAGAGAGCTGGAGA+AGG - chr6_3:10874698-10874717 Msa0939000:CDS 45.0%
CTGAAAACTTGAGGGATGAG+AGG - chr6_3:10874943-10874962 Msa0939000:CDS 45.0%
ACAGGAAGTTGAGAAGGAGA+AGG - chr6_3:10875028-10875047 Msa0939000:intron 45.0%
ATGGGAAGAAGTCAAGTCTG+AGG - chr6_3:10875394-10875413 Msa0939000:intron 45.0%
TGGGAAGAAGTCAAGTCTGA+GGG - chr6_3:10875395-10875414 Msa0939000:intron 45.0%
GAGGGGATCAGATTAGAGAA+TGG - chr6_3:10875413-10875432 Msa0939000:intron 45.0%
TGAGAAGCTCAGGAATTGCA+AGG - chr6_3:10875586-10875605 Msa0939000:intron 45.0%
TCAGGAATTGCAAGGACTGT+GGG - chr6_3:10875594-10875613 Msa0939000:intron 45.0%
! ACCTGACAGTAAAGAGTGTG+GGG - chr6_3:10875655-10875674 Msa0939000:CDS 45.0%
TCAAGAGGAGATGTAGGCAA+GGG + chr6_3:10875686-10875705 None:intergenic 45.0%
GAGTTCTCAAGAGGAGATGT+AGG + chr6_3:10875692-10875711 None:intergenic 45.0%
CAGGCCATTTAGATCCAGAA+TGG + chr6_3:10875745-10875764 None:intergenic 45.0%
ACGACAAATAGCAGATGGAG+TGG - chr6_3:10875949-10875968 Msa0939000:intron 45.0%
! TGGCAATGTTATCGGATTGG+AGG + chr6_3:10876000-10876019 None:intergenic 45.0%
CTCTGGCAATGTTATCGGAT+TGG + chr6_3:10876003-10876022 None:intergenic 45.0%
ATCCGATAACATTGCCAGAG+AGG - chr6_3:10876003-10876022 Msa0939000:CDS 45.0%
TCCGATAACATTGCCAGAGA+GGG - chr6_3:10876004-10876023 Msa0939000:CDS 45.0%
TTCTCAACAGTCAGTCCCAA+AGG - chr6_3:10876099-10876118 Msa0939000:CDS 45.0%
GTCTTTGTCGACCAACCTTT+GGG + chr6_3:10876117-10876136 None:intergenic 45.0%
AGTAGCTTTCTCAGTGTGAC+TGG + chr6_3:10876275-10876294 None:intergenic 45.0%
AGTCACACTGAGAAAGCTAC+TGG - chr6_3:10876274-10876293 Msa0939000:intron 45.0%
! CAGAATGCTGCTGATAGTGA+AGG - chr6_3:10876352-10876371 Msa0939000:intron 45.0%
CATTCAGACAGTACAACAGC+TGG - chr6_3:10876376-10876395 Msa0939000:intron 45.0%
! TTCTCCCCTGTAACTTGTGT+GGG + chr6_3:10876436-10876455 None:intergenic 45.0%
TCTTATTGGGAAGAGGGGAA+CGG + chr6_3:10876826-10876845 None:intergenic 45.0%
GGTGCAATCAATGAGACGAT+TGG + chr6_3:10876871-10876890 None:intergenic 45.0%
TAGAAACTGAAAGGGGGCAA+CGG + chr6_3:10876901-10876920 None:intergenic 45.0%
TGAGGTGTGGATGTAGTTCT+AGG - chr6_3:10877071-10877090 Msa0939000:intron 45.0%
ACACCTAATGCGGGTATGTT+TGG + chr6_3:10877339-10877358 None:intergenic 45.0%
!! TGCATTTGGCTTTACTGTGG+TGG - chr6_3:10877614-10877633 Msa0939000:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr6_3:10877953-10877972 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr6_3:10877954-10877973 None:intergenic 45.0%
TGTCTTTCTTTGAGCAGTGC+AGG - chr6_3:10877995-10878014 Msa0939000:intron 45.0%
AGGCACAGTTTCATCAACAC+AGG - chr6_3:10878015-10878034 Msa0939000:intron 45.0%
GGAGTTATCCAGCGAAACAA+AGG - chr6_3:10878036-10878055 Msa0939000:intron 45.0%
! TTCAAGAGCCTTTGTTTCGC+TGG + chr6_3:10878047-10878066 None:intergenic 45.0%
AGAAGCTTCTGGTGGTAAAC+AGG - chr6_3:10878069-10878088 Msa0939000:intron 45.0%
GATCTCAACCGTAAAGTCTG+TGG - chr6_3:10878162-10878181 Msa0939000:intron 45.0%
!! GAAAGTGCTACACTGGAGTA+TGG - chr6_3:10878367-10878386 Msa0939000:intron 45.0%
CTGGAGTATGGAGATGAAGA+TGG - chr6_3:10878379-10878398 Msa0939000:intron 45.0%
TGACGTTGAAAATGAGGACG+AGG - chr6_3:10878414-10878433 Msa0939000:CDS 45.0%
GACGTTGAAAATGAGGACGA+GGG - chr6_3:10878415-10878434 Msa0939000:CDS 45.0%
ACGTTGAAAATGAGGACGAG+GGG - chr6_3:10878416-10878435 Msa0939000:CDS 45.0%
AGATGAAGAGGAAGACGAAG+AGG - chr6_3:10878441-10878460 Msa0939000:CDS 45.0%
TTGCCAGAGGACAGTCATAA+CGG + chr6_3:10878694-10878713 None:intergenic 45.0%
AATGTACTGCTTAGGCACAG+AGG - chr6_3:10878718-10878737 Msa0939000:five_prime_UTR 45.0%
!! TAGAATAAAATTATATTATT+TGG + chr6_3:10874101-10874120 None:intergenic 5.0%
GTGATTGAACGGAGTTTCGC+CGG + chr6_3:10870685-10870704 None:intergenic 50.0%
GCGAAACTCCGTTCAATCAC+CGG - chr6_3:10870685-10870704 Msa0939000:three_prime_UTR 50.0%
! ACATTGCGCCGGTGATTGAA+CGG + chr6_3:10870696-10870715 None:intergenic 50.0%
ATCACGACCTATCGGTACAC+CGG - chr6_3:10870732-10870751 Msa0939000:three_prime_UTR 50.0%
! AATGATGCCGGTGTACCGAT+AGG + chr6_3:10870742-10870761 None:intergenic 50.0%
TCATTCACACCGCGTCGAAT+TGG - chr6_3:10870757-10870776 Msa0939000:three_prime_UTR 50.0%
ACCTAAATCTGCCCTCGCAA+AGG - chr6_3:10870786-10870805 Msa0939000:three_prime_UTR 50.0%
CCTAAATCTGCCCTCGCAAA+GGG - chr6_3:10870787-10870806 Msa0939000:three_prime_UTR 50.0%
! CAACAGCTTTTCCCTTTGCG+AGG + chr6_3:10870801-10870820 None:intergenic 50.0%
TCAGTCAAAGAACCCAACGG+CGG + chr6_3:10870844-10870863 None:intergenic 50.0%
TGATACCGGCGATGATGTTG+TGG - chr6_3:10870861-10870880 Msa0939000:exon 50.0%
! GAATTGGTCTCCGGATGAGT+TGG - chr6_3:10871151-10871170 Msa0939000:intron 50.0%
CGGAACTAGGAAACGTACAC+AGG - chr6_3:10871561-10871580 Msa0939000:intron 50.0%
AGGAGTGAGCTAGGGAATTG+GGG - chr6_3:10871612-10871631 Msa0939000:intron 50.0%
! GGAGAGACCATGCCTTTTGT+GGG - chr6_3:10871635-10871654 Msa0939000:intron 50.0%
AACTGCATGATGCAGAAGCC+AGG - chr6_3:10873288-10873307 Msa0939000:CDS 50.0%
TATGAAGTTGCGAGAGCTGG+AGG - chr6_3:10873346-10873365 Msa0939000:CDS 50.0%
!! ACCTCAAAGGTACTAGGCAG+GGG + chr6_3:10874156-10874175 None:intergenic 50.0%
!! GACCTCAAAGGTACTAGGCA+GGG + chr6_3:10874157-10874176 None:intergenic 50.0%
!! TGACCTCAAAGGTACTAGGC+AGG + chr6_3:10874158-10874177 None:intergenic 50.0%
AAAGCGGAAATCTCTCGCTG+AGG - chr6_3:10874497-10874516 Msa0939000:CDS 50.0%
TGAGGAGTTTAGCAGCAAGG+AGG - chr6_3:10874515-10874534 Msa0939000:CDS 50.0%
GAGAGAGCTGGAGAAGGAAA+AGG - chr6_3:10874704-10874723 Msa0939000:CDS 50.0%
! GCTTGCTGATCGGAAGAGTT+TGG - chr6_3:10874734-10874753 Msa0939000:CDS 50.0%
ACTTGAGGGATGAGAGGCTT+AGG - chr6_3:10874949-10874968 Msa0939000:CDS 50.0%
GGGAAGAAGTCAAGTCTGAG+GGG - chr6_3:10875396-10875415 Msa0939000:intron 50.0%
GAAAGAACGTGAACGCCTTG+TGG - chr6_3:10875535-10875554 Msa0939000:intron 50.0%
! TCGCACTTGTTGAGAAGCTC+AGG - chr6_3:10875576-10875595 Msa0939000:intron 50.0%
CTCAGGAATTGCAAGGACTG+TGG - chr6_3:10875593-10875612 Msa0939000:intron 50.0%
CAGGAATTGCAAGGACTGTG+GGG - chr6_3:10875595-10875614 Msa0939000:intron 50.0%
ACCCCACACTCTTTACTGTC+AGG + chr6_3:10875659-10875678 None:intergenic 50.0%
CTCAAGAGGAGATGTAGGCA+AGG + chr6_3:10875687-10875706 None:intergenic 50.0%
!! GCTTCTGGCTCAAACCATTC+TGG - chr6_3:10875728-10875747 Msa0939000:CDS 50.0%
CATTTGCGGAACACAGACAC+AGG + chr6_3:10875764-10875783 None:intergenic 50.0%
CCCCTCTCTGGCAATGTTAT+CGG + chr6_3:10876008-10876027 None:intergenic 50.0%
CCGATAACATTGCCAGAGAG+GGG - chr6_3:10876005-10876024 Msa0939000:CDS 50.0%
ATGGAAAGTTTGACAGGGGG+AGG - chr6_3:10876067-10876086 Msa0939000:CDS 50.0%
CAACAGTCAGTCCCAAAGGT+TGG - chr6_3:10876103-10876122 Msa0939000:CDS 50.0%
GGTCTTTGTCGACCAACCTT+TGG + chr6_3:10876118-10876137 None:intergenic 50.0%
! AAGGTTGGTCGACAAAGACC+TGG - chr6_3:10876118-10876137 Msa0939000:CDS 50.0%
! AGGTTGGTCGACAAAGACCT+GGG - chr6_3:10876119-10876138 Msa0939000:CDS 50.0%
!! CCAGATTTGCTTTTCCTCCC+AGG + chr6_3:10876139-10876158 None:intergenic 50.0%
CCTGGGAGGAAAAGCAAATC+TGG - chr6_3:10876136-10876155 Msa0939000:CDS 50.0%
TGCTAGAACACGCTCAGTGA+AGG - chr6_3:10876162-10876181 Msa0939000:CDS 50.0%
CTCAGTGAAGGCTGTGGTTA+AGG - chr6_3:10876174-10876193 Msa0939000:CDS 50.0%
AGTGAAGGCTGTGGTTAAGG+AGG - chr6_3:10876177-10876196 Msa0939000:CDS 50.0%
AAGGAGGCCAATGAGTTCCT+AGG - chr6_3:10876193-10876212 Msa0939000:CDS 50.0%
TCAGACAGTACAACAGCTGG+TGG - chr6_3:10876379-10876398 Msa0939000:intron 50.0%
CAGACAGTACAACAGCTGGT+GGG - chr6_3:10876380-10876399 Msa0939000:intron 50.0%
CTCCACCCACACAAGTTACA+GGG - chr6_3:10876428-10876447 Msa0939000:intron 50.0%
TCCACCCACACAAGTTACAG+GGG - chr6_3:10876429-10876448 Msa0939000:intron 50.0%
! CTTCTCCCCTGTAACTTGTG+TGG + chr6_3:10876437-10876456 None:intergenic 50.0%
!! AGAAGCGTTACAACCTCAGG+CGG - chr6_3:10876452-10876471 Msa0939000:intron 50.0%
!! TTAGTCTCAGGGGCCTTGTT+TGG - chr6_3:10876489-10876508 Msa0939000:intron 50.0%
!! TAGTCTCAGGGGCCTTGTTT+GGG - chr6_3:10876490-10876509 Msa0939000:intron 50.0%
CTTATTGGGAAGAGGGGAAC+GGG + chr6_3:10876825-10876844 None:intergenic 50.0%
AGAAACTGAAAGGGGGCAAC+GGG + chr6_3:10876900-10876919 None:intergenic 50.0%
TAATTGCAGCCCCTCAATCC+TGG - chr6_3:10877510-10877529 Msa0939000:intron 50.0%
CCACAACCGACAATGATGCA+TGG + chr6_3:10877794-10877813 None:intergenic 50.0%
! CCATGCATCATTGTCGGTTG+TGG - chr6_3:10877791-10877810 Msa0939000:intron 50.0%
! CATCATTGTCGGTTGTGGTC+TGG - chr6_3:10877796-10877815 Msa0939000:intron 50.0%
! GACTGTGGACTGCCTAAAAC+AGG - chr6_3:10877876-10877895 Msa0939000:intron 50.0%
TTGAGCTGACCCCACTTAGT+GGG - chr6_3:10877941-10877960 Msa0939000:intron 50.0%
TGACCCCACTTAGTGGGATA+AGG - chr6_3:10877947-10877966 Msa0939000:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr6_3:10877955-10877974 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr6_3:10877952-10877971 Msa0939000:intron 50.0%
AGCTTCTGGTGGTAAACAGG+AGG - chr6_3:10878072-10878091 Msa0939000:intron 50.0%
! CAGCTACCACTGCTACTTCA+GGG + chr6_3:10878111-10878130 None:intergenic 50.0%
! TCAGCTACCACTGCTACTTC+AGG + chr6_3:10878112-10878131 None:intergenic 50.0%
TCTGCACTAGAGTCGTGGTT+TGG + chr6_3:10878144-10878163 None:intergenic 50.0%
TGAGATCTGCACTAGAGTCG+TGG + chr6_3:10878149-10878168 None:intergenic 50.0%
!! TGGTGCTACAACCAACTCTG+TGG - chr6_3:10878333-10878352 Msa0939000:intron 50.0%
TTCAATGCGGTCCACAGAGT+TGG + chr6_3:10878347-10878366 None:intergenic 50.0%
CGTTGAAAATGAGGACGAGG+GGG - chr6_3:10878417-10878436 Msa0939000:CDS 50.0%
TGAAGAGGAAGACGAAGAGG+AGG - chr6_3:10878444-10878463 Msa0939000:CDS 50.0%
TTTCCGATAGACACCTCACC+GGG + chr6_3:10878478-10878497 None:intergenic 50.0%
CTTTCCGATAGACACCTCAC+CGG + chr6_3:10878479-10878498 None:intergenic 50.0%
TGTCCGTTATGACTGTCCTC+TGG - chr6_3:10878688-10878707 Msa0939000:five_prime_UTR 50.0%
TGCGAGGGCAGATTTAGGTG+TGG + chr6_3:10870785-10870804 None:intergenic 55.0%
CCCTTTGCGAGGGCAGATTT+AGG + chr6_3:10870790-10870809 None:intergenic 55.0%
TACCGGCGATGATGTTGTGG+TGG - chr6_3:10870864-10870883 Msa0939000:exon 55.0%
AGCCACCACAACATCATCGC+CGG + chr6_3:10870869-10870888 None:intergenic 55.0%
GGAGTGAGCTAGGGAATTGG+GGG - chr6_3:10871613-10871632 Msa0939000:intron 55.0%
GAGTGAGCTAGGGAATTGGG+GGG - chr6_3:10871614-10871633 Msa0939000:intron 55.0%
! GGGAGAGACCATGCCTTTTG+TGG - chr6_3:10871634-10871653 Msa0939000:intron 55.0%
! ACCATGCCTTTTGTGGGCCT+GGG - chr6_3:10871641-10871660 Msa0939000:intron 55.0%
GTTCCAAGTTCGATCGGCTG+AGG - chr6_3:10872052-10872071 Msa0939000:intron 55.0%
TTGCCTCAGCCGATCGAACT+TGG + chr6_3:10872058-10872077 None:intergenic 55.0%
! AGAGTACCACTCAGCTCCTC+TGG - chr6_3:10872455-10872474 Msa0939000:intron 55.0%
GAGTACCACTCAGCTCCTCT+GGG - chr6_3:10872456-10872475 Msa0939000:intron 55.0%
CAAAACCCAGAGGAGCTGAG+TGG + chr6_3:10872464-10872483 None:intergenic 55.0%
CCTGTTTACCTCAGCAAGCC+TGG + chr6_3:10873309-10873328 None:intergenic 55.0%
!! CCAGGCTTGCTGAGGTAAAC+AGG - chr6_3:10873306-10873325 Msa0939000:CDS 55.0%
AGGAGTGGGAGAGGAAGCTA+CGG - chr6_3:10873565-10873584 Msa0939000:CDS 55.0%
GAGGAAGCTACGGCAAAGAG+AGG - chr6_3:10873575-10873594 Msa0939000:CDS 55.0%
ACCCCTGCCTAGTACCTTTG+AGG - chr6_3:10874152-10874171 Msa0939000:CDS 55.0%
CGCTGAGGAGTTTAGCAGCA+AGG - chr6_3:10874512-10874531 Msa0939000:CDS 55.0%
GGAGTTTAGCAGCAAGGAGG+AGG - chr6_3:10874518-10874537 Msa0939000:CDS 55.0%
AGGAGGAGGCCTTGGAGTAT+AGG - chr6_3:10874532-10874551 Msa0939000:CDS 55.0%
GGAGGAGGCCTTGGAGTATA+GGG - chr6_3:10874533-10874552 Msa0939000:CDS 55.0%
GGAGATGGAGAAAGACCTGC+AGG - chr6_3:10875292-10875311 Msa0939000:intron 55.0%
AGGACTGTGGGGAAGTTGTC+AGG - chr6_3:10875606-10875625 Msa0939000:CDS 55.0%
GGACTGTGGGGAAGTTGTCA+GGG - chr6_3:10875607-10875626 Msa0939000:CDS 55.0%
TTGGTCGACAAAGACCTGGG+AGG - chr6_3:10876122-10876141 Msa0939000:CDS 55.0%
AACACGCTCAGTGAAGGCTG+TGG - chr6_3:10876168-10876187 Msa0939000:CDS 55.0%
! CTGGTGGGCGCAAGAAGAAA+AGG - chr6_3:10876395-10876414 Msa0939000:intron 55.0%
GCTCCACCCACACAAGTTAC+AGG - chr6_3:10876427-10876446 Msa0939000:intron 55.0%
! TCCCCTGTAACTTGTGTGGG+TGG + chr6_3:10876433-10876452 None:intergenic 55.0%
!! GGGAGAAGCGTTACAACCTC+AGG - chr6_3:10876449-10876468 Msa0939000:intron 55.0%
CTTACGTCTTATGCCGCCTG+AGG + chr6_3:10876468-10876487 None:intergenic 55.0%
!! AGTCTCAGGGGCCTTGTTTG+GGG - chr6_3:10876491-10876510 Msa0939000:intron 55.0%
AAAGGGGGCAACGGGACAAT+TGG + chr6_3:10876892-10876911 None:intergenic 55.0%
AGTGGGGTCAGCTCAAGGAA+AGG + chr6_3:10877937-10877956 None:intergenic 55.0%
CACTAAGTGGGGTCAGCTCA+AGG + chr6_3:10877942-10877961 None:intergenic 55.0%
CTTGAGCTGACCCCACTTAG+TGG - chr6_3:10877940-10877959 Msa0939000:intron 55.0%
TCTGGTGGTAAACAGGAGGC+AGG - chr6_3:10878076-10878095 Msa0939000:intron 55.0%
AGAGGAAGACGAAGAGGAGG+AGG - chr6_3:10878447-10878466 Msa0939000:CDS 55.0%
! GATCCCGGTGAGGTGTCTAT+CGG - chr6_3:10878472-10878491 Msa0939000:CDS 55.0%
CGACGCGGTGTGAATGATGC+CGG + chr6_3:10870754-10870773 None:intergenic 60.0%
GGTGTGGCACCAATTCGACG+CGG + chr6_3:10870769-10870788 None:intergenic 60.0%
GTCAAAGAACCCAACGGCGG+CGG + chr6_3:10870841-10870860 None:intergenic 60.0%
! GACCATGCCTTTTGTGGGCC+TGG - chr6_3:10871640-10871659 Msa0939000:intron 60.0%
ACCCAGGCCCACAAAAGGCA+TGG + chr6_3:10871645-10871664 None:intergenic 60.0%
!! TGCAGAAGCCAGGCTTGCTG+AGG - chr6_3:10873298-10873317 Msa0939000:CDS 60.0%
TAGCAGCAAGGAGGAGGCCT+TGG - chr6_3:10874524-10874543 Msa0939000:CDS 60.0%
GGACGAGGGGGAAGATGAAG+AGG - chr6_3:10878429-10878448 Msa0939000:CDS 60.0%
GGAAGACGAAGAGGAGGAGG+AGG - chr6_3:10878450-10878469 Msa0939000:CDS 60.0%
GAAGAGGAGGAGGAGGATCC+CGG - chr6_3:10878457-10878476 Msa0939000:CDS 60.0%
CTGCGGCGTGAACATTGCGC+CGG + chr6_3:10870707-10870726 None:intergenic 65.0%
CAACGGCGGCGGAGGTTCAT+CGG + chr6_3:10870830-10870849 None:intergenic 65.0%
GATGAACCTCCGCCGCCGTT+GGG - chr6_3:10870829-10870848 Msa0939000:three_prime_UTR 65.0%
AAAGAACCCAACGGCGGCGG+AGG + chr6_3:10870838-10870857 None:intergenic 65.0%
CGATGAACCTCCGCCGCCGT+TGG - chr6_3:10870828-10870847 Msa0939000:three_prime_UTR 70.0%
GGAGGAGGAGGATCCCGGTG+AGG - chr6_3:10878462-10878481 Msa0939000:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 10870569 10878824 10870569 ID=Msa0939000;Name=Msa0939000
chr6_3 mRNA 10870569 10878824 10870569 ID=Msa0939000-mRNA-1;Parent=Msa0939000;Name=Msa0939000-mRNA-1;_AED=0.07;_eAED=0.07;_QI=143|1|1|1|1|1|8|299|1200
chr6_3 exon 10870569 10871092 10870569 ID=Msa0939000-mRNA-1:exon:3508;Parent=Msa0939000-mRNA-1
chr6_3 exon 10871183 10871381 10871183 ID=Msa0939000-mRNA-1:exon:3507;Parent=Msa0939000-mRNA-1
chr6_3 exon 10872911 10874976 10872911 ID=Msa0939000-mRNA-1:exon:3506;Parent=Msa0939000-mRNA-1
chr6_3 exon 10875416 10875499 10875416 ID=Msa0939000-mRNA-1:exon:3505;Parent=Msa0939000-mRNA-1
chr6_3 exon 10875605 10875875 10875605 ID=Msa0939000-mRNA-1:exon:3504;Parent=Msa0939000-mRNA-1
chr6_3 exon 10875979 10876232 10875979 ID=Msa0939000-mRNA-1:exon:3503;Parent=Msa0939000-mRNA-1
chr6_3 exon 10877187 10877396 10877187 ID=Msa0939000-mRNA-1:exon:3502;Parent=Msa0939000-mRNA-1
chr6_3 exon 10878388 10878824 10878388 ID=Msa0939000-mRNA-1:exon:3501;Parent=Msa0939000-mRNA-1
chr6_3 five_prime_UTR 10878682 10878824 10878682 ID=Msa0939000-mRNA-1:five_prime_utr;Parent=Msa0939000-mRNA-1
chr6_3 CDS 10878388 10878681 10878388 ID=Msa0939000-mRNA-1:cds;Parent=Msa0939000-mRNA-1
chr6_3 CDS 10877187 10877396 10877187 ID=Msa0939000-mRNA-1:cds;Parent=Msa0939000-mRNA-1
chr6_3 CDS 10875979 10876232 10875979 ID=Msa0939000-mRNA-1:cds;Parent=Msa0939000-mRNA-1
chr6_3 CDS 10875605 10875875 10875605 ID=Msa0939000-mRNA-1:cds;Parent=Msa0939000-mRNA-1
chr6_3 CDS 10875416 10875499 10875416 ID=Msa0939000-mRNA-1:cds;Parent=Msa0939000-mRNA-1
chr6_3 CDS 10872911 10874976 10872911 ID=Msa0939000-mRNA-1:cds;Parent=Msa0939000-mRNA-1
chr6_3 CDS 10871183 10871381 10871183 ID=Msa0939000-mRNA-1:cds;Parent=Msa0939000-mRNA-1
chr6_3 CDS 10870868 10871092 10870868 ID=Msa0939000-mRNA-1:cds;Parent=Msa0939000-mRNA-1
chr6_3 three_prime_UTR 10870569 10870867 10870569 ID=Msa0939000-mRNA-1:three_prime_utr;Parent=Msa0939000-mRNA-1
Gene Sequence

>Msa0939000

ATGTTCACGCCGCAGAGAAAATCACGACCTATCGGTACACCGGCATCATTCACACCGCGTCGAATTGGTGCCACACCTAAATCTGCCCTCGCAAAGGGAAAAGCTGTTGTCATCGCCGATGAACCTCCGCCGCCGTTGGGTTCTTTGACTGATACCGGCGATGATGTTGTGGTGGCTTCTAGTTATGCTGAAGATTGGAAGAGGTTTAGAGAAGTTGGACTGCTTGATGAAGCGGTAATGAAGAGGAAAGATGATGAAGCGATGTTGGAGAAGATTTCGAGACTGGAGAAAGAGCTTTATGATTATCAGTACAACATGGGTCTCCTTCTTATTGAGAAGCAAGAGTGGAGTTCCAAGTTCGATCGGCTGAGGCAAGAACTAGCTGAAACTCAGGAGGTTCTAAAACGAGATCAATCATCGCATTTGATTGCATTGTCTGAAGTCCAAAAACGAGAGGAAAATTTGAGGAAAGCTTTGAGTTTAGAAAAGCAGTGTGGAGCTGATCTTGAGAGAGCTTTGCGTGCAATGCAAGAAGAGCTTGCCGAAGTCCAGTCTTCTTCCCATACAAAGCTAGATAAAGCAAATGAATTGGTGGATGGAATTGAAGAGAAGGCTTCAACAGTTAACAAGAAACTGCATGATGCAGAAGCCAGGCTTGCTGAGGTAAACAGGAAAAATACAGAGCTAGATATGAAGTTGCGAGAGCTGGAGGTTCGTGAAAGTTTGCTTCAAAAGGAGCGGTTGTCAGTAGCTACCGATCGAGAATCGTTTGAATCAGTATTCTACAAACAAAGGGAAGATTTGAAGGAGTGGGAGAGGAAGCTACGGCAAAGAGAGGATATGCTAAGTGATGGTAGGCAAAATCTTGGTGAGAAAGAAAAGAATGTGACTGAAACAGAAAAAAAGCTGAAGCAGAAAGAGAGAGATCTAGAAGTGTTGGAGAAGAATATTAACTCATCTAATTCTTTATTAAAAGAAAAGGAAGCTGAGATGAGTAGAAGAGTAGCAGATGTAGATGCAGAAGAGAAGAAAGTGGATTCTGCAAAGAAAACGCTGGATATTAAAGAGAAAGAATTACATGAACTGGAACTAAAGCTTAGTGCCAGAGAAAGTGAAGGGATCCAGAAACTTCTTGATGAGCAAAAACATACTCTGGATTTAAAGTTGCAGCAGTTTGAGCTTGAAATGGAACAAAAGCGGAAATCTCTCGCTGAGGAGTTTAGCAGCAAGGAGGAGGCCTTGGAGTATAGGGAAATCGAAGTCAACCATAGGGAAACCAAGGTTGGAAAAGAAGAGCAAGCTTTGAGTACGAAGTCTGAGAGAATAAAGGAGCAAGATAAGGAACTTTTAACAAAGTTGAAATCATTGAAGGAGGAAGAAAAGACTATGAAAATAAAAGAGAGAGAGCTGGAGAAGGAAAAGGAGAAATTGCTTGCTGATCGGAAGAGTTTGGAGAATTTAAATGCTGAACTTGGGAAGCTTAAAGCTGAGATTTCTCAGCAGAAGCTGCAAATATGCCAAGAGACTGAGAATTTGAAGCTTACTCAAGATGAGAGGTCAGAGCATTCTCGTTTGCAATTGGAACTAAAGCAGGAGATAGAGCATACGAGAACGCAGAAAGATTTAATTATGAAGGAAGCTGAAAACTTGAGGGATGAGAGGCTTAGGTTTGAGAAAGAATGGGAAGAACTGGATAAGAAAAGAGCTGACATTAGTGCAGAACAACAGGAAGTTGAGAAGGAGAAGGAAAAGTTAAGAAAACTGAAGAACAGTGAAGAAGAAAGGTTGAAAAGAGAGAAGCAAGATATGGAAGATAATTTAAAGAAGGAGCTTGAAAAGCTTGAATTGGATAAGAAATCATTTAGTGATTCAATTAAACAAGAGGAATTTCTTTTATCTGAAAAGGTAAAAAATGAAAAGGCACAAATGGTTCAAGATTTTGAATGGAAAACAAGAAATCTTGAGAATGAAATTCAGAAAAGGAAAGAGGAGATGGAGAAAGACCTGCAGGAAAGAGAGAGAAAATTTCAGGAGGAGATGGAAAAAGAGCTTAATAATATTAATATCTTGAAAGATGCTGCTGAAAAGGAATGGGAAGAAGTCAAGTCTGAGGGGATCAGATTAGAGAATGGGAGAAAAGAACTCGAGACAAACAAGCAACAGCTGAAGTCTGACCAACGTGAGATGCATGAAGATTCTGAAATGCTTATGAATCTTAGCCAGAAAGTAAAGAAAGAACGTGAACGCCTTGTGGCTGAAAGAAACCATTTTCTCGCACTTGTTGAGAAGCTCAGGAATTGCAAGGACTGTGGGGAAGTTGTCAGGGACGTTGTTGTGTCTGATCTTCAGTTACCTGACAGTAAAGAGTGTGGGGTTCTTCCCTTGCCTACATCTCCTCTTGAGAACTCAAAGGACAATGTTATCGCTTCTGGCTCAAACCATTCTGGATCTAAATGGCCTGTGTCTGTGTTCCGCAAATGCACGTCCAAGATTTTCAGTTTATCCCCTAGTACTAACACAGATTCTATTGGTACTTCAAATATAGCTGGGACGTCCCCTGAGTCTGATGTAAATGTTAATATAGAAAAAGTAGGAGAGCCTGTGTCATCTCCTAATATAGAAGGACCGATAGTTACTCTTCAAGAACGACAAATAGCAGATGGAGTGGCTTTTCACTCTTCTGATACAGCACACCTCCAATCCGATAACATTGCCAGAGAGGGGAATACTGAATATTCTTTATCCATAGATGAACACAGCTACATGGAAAGTTTGACAGGGGGAGGTCCAGATGATTCTCAACAGTCAGTCCCAAAGGTTGGTCGACAAAGACCTGGGAGGAAAAGCAAATCTGGAATTGCTAGAACACGCTCAGTGAAGGCTGTGGTTAAGGAGGCCAATGAGTTCCTAGGAAAAACGAGTTTGCAAAATCTTGATACTGATCATATCAAAGAAAATAGTCAAGAGTCCAGTCACACTGAGAAAGCTACTGGTAACAGTACAAGGAAGCGACAACGTGCACAAACTTCTAAGATTGCTGAAGGTGAGCAGAATGCTGCTGATAGTGAAGGACATTCAGACAGTACAACAGCTGGTGGGCGCAAGAAGAAAAGGTCAACAGTTGCTCCACCCACACAAGTTACAGGGGAGAAGCGTTACAACCTCAGGCGGCATAAGACTGCAGGCACAGTTTCATCAACACAGGAGTTATCCAGCGAAACAAAGGCTCTTGAAAAAGAAGCTTCTGGTGGTAAACAGGAGGCAGGTGATAAAAACCCTGAAGTAGCAGTGGTAGCTGATGACAATATCCAAACCACGACTCTAGTGCAGATCTCAACCGTAAAGTCTGTGGAGATCAAAGATGATCGAGTTGTAAGGTTTGAAATACCAAGAGACAATGTTGATGACAATGGTGCTACAACCAACTCTGTGGACCGCATTGAAGAAAGTGCTACACTGGAGTATGGAGATGAAGATGGAAGCATAGTCAATGACGTTGAAAATGAGGACGAGGGGGAAGATGAAGAGGAAGACGAAGAGGAGGAGGAGGATCCCGGTGAGGTGTCTATCGGAAAGAAGATCTTCAAATTTTTCACAACATGA
Protein sequence

>Msa0939000

MFTPQRKSRPIGTPASFTPRRIGATPKSALAKGKAVVIADEPPPPLGSLTDTGDDVVVASSYAEDWKRFREVGLLDEAVMKRKDDEAMLEKISRLEKELYDYQYNMGLLLIEKQEWSSKFDRLRQELAETQEVLKRDQSSHLIALSEVQKREENLRKALSLEKQCGADLERALRAMQEELAEVQSSSHTKLDKANELVDGIEEKASTVNKKLHDAEARLAEVNRKNTELDMKLRELEVRESLLQKERLSVATDRESFESVFYKQREDLKEWERKLRQREDMLSDGRQNLGEKEKNVTETEKKLKQKERDLEVLEKNINSSNSLLKEKEAEMSRRVADVDAEEKKVDSAKKTLDIKEKELHELELKLSARESEGIQKLLDEQKHTLDLKLQQFELEMEQKRKSLAEEFSSKEEALEYREIEVNHRETKVGKEEQALSTKSERIKEQDKELLTKLKSLKEEEKTMKIKERELEKEKEKLLADRKSLENLNAELGKLKAEISQQKLQICQETENLKLTQDERSEHSRLQLELKQEIEHTRTQKDLIMKEAENLRDERLRFEKEWEELDKKRADISAEQQEVEKEKEKLRKLKNSEEERLKREKQDMEDNLKKELEKLELDKKSFSDSIKQEEFLLSEKVKNEKAQMVQDFEWKTRNLENEIQKRKEEMEKDLQERERKFQEEMEKELNNINILKDAAEKEWEEVKSEGIRLENGRKELETNKQQLKSDQREMHEDSEMLMNLSQKVKKERERLVAERNHFLALVEKLRNCKDCGEVVRDVVVSDLQLPDSKECGVLPLPTSPLENSKDNVIASGSNHSGSKWPVSVFRKCTSKIFSLSPSTNTDSIGTSNIAGTSPESDVNVNIEKVGEPVSSPNIEGPIVTLQERQIADGVAFHSSDTAHLQSDNIAREGNTEYSLSIDEHSYMESLTGGGPDDSQQSVPKVGRQRPGRKSKSGIARTRSVKAVVKEANEFLGKTSLQNLDTDHIKENSQESSHTEKATGNSTRKRQRAQTSKIAEGEQNAADSEGHSDSTTAGGRKKKRSTVAPPTQVTGEKRYNLRRHKTAGTVSSTQELSSETKALEKEASGGKQEAGDKNPEVAVVADDNIQTTTLVQISTVKSVEIKDDRVVRFEIPRDNVDDNGATTNSVDRIEESATLEYGDEDGSIVNDVENEDEGEDEEEDEEEEEDPGEVSIGKKIFKFFTT*