AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0288730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0288730 MtrunA17_Chr2g0308791 96.757 185 6 0 159 343 5 189 2.85e-134 380
Msa0288730 MtrunA17_Chr2g0308781 94.340 159 6 1 1 159 36 191 7.26e-107 310
Msa0288730 MtrunA17_Chr7g0257311 35.933 359 189 9 1 339 31 368 9.87e-63 204
Msa0288730 MtrunA17_Chr7g0259841 24.876 201 133 4 1 196 104 291 1.98e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0288730 AT4G10650.1 52.770 343 149 5 1 338 33 367 5.20e-117 343
Msa0288730 AT2G41670.1 38.218 348 197 6 1 339 33 371 5.62e-74 234
Msa0288730 AT2G41670.2 39.592 245 136 4 102 339 16 255 2.74e-53 177

Find 87 sgRNAs with CRISPR-Local

Find 448 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTTCTCGTTCCACTTTAC+AGG 0.138085 2_3:+34334899 Msa0288730:CDS
AAGAGCGTTGAGAGAAAATT+AGG 0.185032 2_3:-34334273 None:intergenic
CAATGGTCAGTGAATATTTC+TGG 0.186267 2_3:-34341021 None:intergenic
TTCCCACCTGCCGCTGTATA+AGG 0.254111 2_3:-34337451 None:intergenic
TAAATGGCAGCGACGCAATT+TGG 0.264214 2_3:+34334639 Msa0288730:intron
GAAAATTAGGTTTCGAAGAC+TGG 0.272909 2_3:-34334260 None:intergenic
TTATCTAAATTACTCTTAAC+AGG 0.277356 2_3:+34338722 Msa0288730:CDS
GCGTTATAAGTGATGGATTA+TGG 0.301811 2_3:+34334712 Msa0288730:five_prime_UTR
TAAAGACATTAGAAGTTATA+AGG 0.302966 2_3:+34337779 Msa0288730:CDS
GAAACGATTTCATCCTTTGA+TGG 0.307728 2_3:+34340822 Msa0288730:CDS
TATCGTTATGCAGGAGCAAT+TGG 0.349223 2_3:+34339992 Msa0288730:intron
AGTGTCTAACACATAAATAT+TGG 0.352105 2_3:-34338660 None:intergenic
GATGCTCATGTCGTGGTTGC+CGG 0.365316 2_3:+34340939 Msa0288730:CDS
ACAGAGTGCTTGACTACATC+TGG 0.370782 2_3:+34340142 Msa0288730:CDS
ACTGCAACAGTATTGTTAAT+CGG 0.377755 2_3:+34337506 Msa0288730:CDS
TGGTCAGTTTACCGCGTTGC+AGG 0.378740 2_3:+34340884 Msa0288730:CDS
GATACCTGTGTGTGATCGTT+AGG 0.386084 2_3:-34340193 None:intergenic
AAATATTCACTGACCATTGC+AGG 0.389069 2_3:+34341025 Msa0288730:exon
TATAAGATGCGAAGTTGAAA+TGG 0.398108 2_3:+34340848 Msa0288730:CDS
AGCACTCTGTTGTGCTGTTA+AGG 0.399466 2_3:-34340129 None:intergenic
TCTTTAGTCTCCCCTGGCTC+TGG 0.404503 2_3:-34337762 None:intergenic
CATTGCAGAAAGAATCCCTT+TGG 0.406410 2_3:+34334767 Msa0288730:CDS
ATTATGGAACGATCCTTTCA+TGG 0.422457 2_3:+34334728 Msa0288730:exon
GTGTCTAACACATAAATATT+GGG 0.426667 2_3:-34338659 None:intergenic
GCTTCCAAATGTTGGAAAAT+CGG 0.431180 2_3:+34337529 Msa0288730:CDS
ATCGTTATGCAGGAGCAATT+GGG 0.434008 2_3:+34339993 Msa0288730:intron
CTGCAACAGTATTGTTAATC+GGG 0.442179 2_3:+34337507 Msa0288730:CDS
AGGAGCAATTGGGGACTGTT+TGG 0.446243 2_3:+34340003 Msa0288730:intron
GAAATGGAAGCACTTATTGC+TGG 0.449784 2_3:+34340864 Msa0288730:CDS
GTTTGTGTTGCTGTGATATG+AGG 0.462512 2_3:-34334232 None:intergenic
ATGCTCATGTCGTGGTTGCC+GGG 0.464219 2_3:+34340940 Msa0288730:CDS
CTAATGCCTTGCATCATGTT+GGG 0.465694 2_3:+34337558 Msa0288730:CDS
CTAATGTCTTTAGTCTCCCC+TGG 0.467223 2_3:-34337768 None:intergenic
AATGGTCAGTGAATATTTCT+GGG 0.476571 2_3:-34341020 None:intergenic
ACTAATGCCTTGCATCATGT+TGG 0.483339 2_3:+34337557 Msa0288730:CDS
TTAATCGGGCTTCCAAATGT+TGG 0.483825 2_3:+34337521 Msa0288730:CDS
ACCTCAGGAGGTAAAACAGC+TGG 0.495588 2_3:-34338683 None:intergenic
GCATCTTATATTACCATCAA+AGG 0.498242 2_3:-34340835 None:intergenic
GCTACTGTGAGTCCAGAGCC+AGG 0.501011 2_3:+34337750 Msa0288730:CDS
CGAGTTGAAGCAACCATGAA+AGG 0.501601 2_3:-34334741 None:intergenic
TGAAAGAAAGAATCGAAAGA+AGG 0.507621 2_3:+34334682 Msa0288730:five_prime_UTR
CCTGCCGCTGTATAAGGCTT+AGG 0.514944 2_3:-34337445 None:intergenic
GTTGGGAGAATTAGTGCTGC+AGG 0.519473 2_3:+34337575 Msa0288730:CDS
AAATGACATTGAGAGGAGAA+TGG 0.521380 2_3:-34334825 None:intergenic
TTAGATAAAACATCAACATC+AGG 0.521854 2_3:-34338707 None:intergenic
ACATCAACATCAGGAACCTC+AGG 0.525166 2_3:-34338698 None:intergenic
CCTAAGCCTTATACAGCGGC+AGG 0.528951 2_3:+34337445 Msa0288730:CDS
GAAGTAACGAACCTGTAAAG+TGG 0.530617 2_3:-34334910 None:intergenic
CAAAGGGATTCTTTCTGCAA+TGG 0.532384 2_3:-34334766 None:intergenic
AAAAGCAGCGTTATAAGTGA+TGG 0.533825 2_3:+34334705 Msa0288730:five_prime_UTR
GTTGCTGTGATATGAGGAGA+TGG 0.537397 2_3:-34334226 None:intergenic
CACAATGCATTGGCCTGCAA+TGG 0.544881 2_3:-34341038 None:intergenic
GTCAGTGAATATTTCTGGGA+AGG 0.545922 2_3:-34341016 None:intergenic
ATACCTGTGTGTGATCGTTA+GGG 0.555887 2_3:-34340192 None:intergenic
TTTGCAGGACGACATGGTGC+AGG 0.557475 2_3:+34340779 Msa0288730:intron
TTGCTGTGATATGAGGAGAT+GGG 0.562096 2_3:-34334225 None:intergenic
GAATCCTCGCATCAGTGACA+TGG 0.567312 2_3:-34334803 None:intergenic
GAGACCAACACACAATGCAT+TGG 0.568272 2_3:-34341048 None:intergenic
TAACAAGGAGAGCATCAGAC+AGG 0.569310 2_3:+34336954 Msa0288730:CDS
AGCGGCAGGTGGGAAAATTG+AGG 0.576728 2_3:+34337459 Msa0288730:CDS
TCGTTATGCAGGAGCAATTG+GGG 0.580997 2_3:+34339994 Msa0288730:intron
CTTCACGTTCAGTTGAAACG+TGG 0.582669 2_3:-34340914 None:intergenic
GAAACGAACTGCATATCTTG+TGG 0.585601 2_3:+34336919 Msa0288730:CDS
CTACTGTGAGTCCAGAGCCA+GGG 0.590849 2_3:+34337751 Msa0288730:CDS
TGGCAGCGACGCAATTTGGA+AGG 0.591327 2_3:+34334643 Msa0288730:intron
GGACTATGAGATCAACCAAA+GGG 0.592573 2_3:-34334782 None:intergenic
ATGGGCAAAGTTATCGAGCA+AGG 0.599511 2_3:+34340090 Msa0288730:CDS
AGAGAGAACGAAGAAAATTG+AGG 0.603627 2_3:-34334305 None:intergenic
GACGCAATTTGGAAGGCGAG+TGG 0.606245 2_3:+34334650 Msa0288730:five_prime_UTR
CTGTGATATGAGGAGATGGG+TGG 0.607375 2_3:-34334222 None:intergenic
TACTGTGAGTCCAGAGCCAG+GGG 0.608126 2_3:+34337752 Msa0288730:CDS
CAGAGTGCTTGACTACATCT+GGG 0.608348 2_3:+34340143 Msa0288730:CDS
AAGCCTTATACAGCGGCAGG+TGG 0.616733 2_3:+34337448 Msa0288730:CDS
ACGCAATTTGGAAGGCGAGT+GGG 0.617392 2_3:+34334651 Msa0288730:five_prime_UTR
CTAACACATAAATATTGGGA+TGG 0.619435 2_3:-34338655 None:intergenic
TGGAGTCGATGCTCATAACA+AGG 0.628893 2_3:+34336939 Msa0288730:CDS
TGTGAGTAAATGACATTGAG+AGG 0.630009 2_3:-34334832 None:intergenic
AGAACGAAGAAAATTGAGGA+CGG 0.633884 2_3:-34334301 None:intergenic
AATTCTCCCAACATGATGCA+AGG 0.637021 2_3:-34337564 None:intergenic
TAGTCCATGTCACTGATGCG+AGG 0.661016 2_3:+34334799 Msa0288730:CDS
AGTTCCTAAGCCTTATACAG+CGG 0.667477 2_3:+34337441 Msa0288730:intron
AGCCTTATACAGCGGCAGGT+GGG 0.668245 2_3:+34337449 Msa0288730:CDS
TCAACATCAGGAACCTCAGG+AGG 0.675667 2_3:-34338695 None:intergenic
TGGACTATGAGATCAACCAA+AGG 0.680919 2_3:-34334783 None:intergenic
GTGGAAAACTTCCTGCAACG+CGG 0.694980 2_3:-34340895 None:intergenic
AATCCCTAACGATCACACAC+AGG 0.703906 2_3:+34340189 Msa0288730:CDS
TGAAGAAGATGCTCATGTCG+TGG 0.731208 2_3:+34340932 Msa0288730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAAAATTGTATTTGA+GGG - chr2_3:34335444-34335463 None:intergenic 10.0%
!! AAATATAAAAATTGTATTTG+AGG - chr2_3:34335445-34335464 None:intergenic 10.0%
!!! CAAATACAATTTTTATATTT+TGG + chr2_3:34335445-34335464 Msa0288730:intron 10.0%
!!! AATACAATTTTTATATTTTG+GGG + chr2_3:34335447-34335466 Msa0288730:intron 10.0%
!! AAAAATAGTATTATAATGAT+GGG + chr2_3:34337246-34337265 Msa0288730:intron 10.0%
!! CAAATTATTTATTAAACTAT+TGG - chr2_3:34340408-34340427 None:intergenic 10.0%
!! ACAAAAAAAAAATATCATTT+CGG - chr2_3:34341093-34341112 None:intergenic 10.0%
!!! AAACTTTTTACATTTTTGTA+TGG + chr2_3:34335301-34335320 Msa0288730:intron 15.0%
!! TTTGAAAATACTAATTAGAT+AGG - chr2_3:34335874-34335893 None:intergenic 15.0%
!! CAAAAATAGTATTATAATGA+TGG + chr2_3:34337245-34337264 Msa0288730:intron 15.0%
!! AAAATAGTATTATAATGATG+GGG + chr2_3:34337247-34337266 Msa0288730:intron 15.0%
!! ATGAACTAATTTACTAATAA+AGG + chr2_3:34337403-34337422 Msa0288730:intron 15.0%
!!! GAAATAAAATTGAAATTTTG+TGG - chr2_3:34337679-34337698 None:intergenic 15.0%
!! TGAAAGAAAAATTATAGAAT+TGG - chr2_3:34337901-34337920 None:intergenic 15.0%
!!! TTTTTACAATCTCATTTATT+TGG + chr2_3:34338007-34338026 Msa0288730:intron 15.0%
!! TAAAAAAAAAAGTCAAAACT+AGG + chr2_3:34338081-34338100 Msa0288730:intron 15.0%
!! AAAAAAAAAAGTCAAAACTA+GGG + chr2_3:34338082-34338101 Msa0288730:intron 15.0%
!!! TATTTTTTTTTTGTTTGTTG+AGG + chr2_3:34341099-34341118 Msa0288730:intron 15.0%
!!! TAACTATTAAGATTGTTTTA+TGG - chr2_3:34341237-34341256 None:intergenic 15.0%
!!! ACTTTTCTTATTTTTGTTGT+TGG + chr2_3:34334419-34334438 Msa0288730:intron 20.0%
!!! CTTTTCTTATTTTTGTTGTT+GGG + chr2_3:34334420-34334439 Msa0288730:intron 20.0%
!! CAATTAAATTGGAAACTATT+TGG + chr2_3:34335164-34335183 Msa0288730:intron 20.0%
!! TAACTAATAACTAACTTAAC+TGG + chr2_3:34335565-34335584 Msa0288730:intron 20.0%
!! AACTTCAAACTCAAAATTAT+TGG - chr2_3:34335771-34335790 None:intergenic 20.0%
!! TATTTAACAAATCCTTGTAA+AGG - chr2_3:34336089-34336108 None:intergenic 20.0%
!!! TAATTAACCATTTTTTACCA+CGG + chr2_3:34336786-34336805 Msa0288730:intron 20.0%
!! AAGATATTATTCCAATTCTA+GGG + chr2_3:34337603-34337622 Msa0288730:intron 20.0%
!!! AACTTTTGTTTTGTAGAAAA+AGG + chr2_3:34337714-34337733 Msa0288730:intron 20.0%
!! TAAAGACATTAGAAGTTATA+AGG + chr2_3:34337779-34337798 Msa0288730:CDS 20.0%
!! AAAAAAAAAGTCAAAACTAG+GGG + chr2_3:34338083-34338102 Msa0288730:intron 20.0%
!!! AGTTTTTGACTTTTTGTATT+TGG - chr2_3:34338176-34338195 None:intergenic 20.0%
!!! TTTTAATTCTGTATATACAG+AGG - chr2_3:34338370-34338389 None:intergenic 20.0%
!!! TGCATATTACATACTTTTTA+TGG + chr2_3:34338510-34338529 Msa0288730:intron 20.0%
!!! GCATATTACATACTTTTTAT+GGG + chr2_3:34338511-34338530 Msa0288730:intron 20.0%
!! TAAGTAAGAAAATCACAAAA+GGG - chr2_3:34338605-34338624 None:intergenic 20.0%
!! ATAAGTAAGAAAATCACAAA+AGG - chr2_3:34338606-34338625 None:intergenic 20.0%
!! TTATCTAAATTACTCTTAAC+AGG + chr2_3:34338722-34338741 Msa0288730:CDS 20.0%
!!! TCTTAACAGGTATTTTTAAT+TGG + chr2_3:34338735-34338754 Msa0288730:intron 20.0%
!!! TTTTTTACATTCTTAGTTAG+TGG + chr2_3:34338777-34338796 Msa0288730:intron 20.0%
!!! TAGACTTTATGTTGATTAAA+AGG - chr2_3:34339205-34339224 None:intergenic 20.0%
!!! CTTTTCTACATTTCTAAATT+TGG + chr2_3:34339726-34339745 Msa0288730:intron 20.0%
!!! ATTTGCATTTCATTTAAAGT+TGG + chr2_3:34340423-34340442 Msa0288730:intron 20.0%
!!! TAAATTGTTTAACCCTTTTT+TGG + chr2_3:34341148-34341167 Msa0288730:three_prime_UTR 20.0%
! CAACAACAATAAGAAGAAAA+GGG - chr2_3:34334507-34334526 None:intergenic 25.0%
! ACAACAACAATAAGAAGAAA+AGG - chr2_3:34334508-34334527 None:intergenic 25.0%
! TGAAAAATAGCTTCTGTAAA+TGG + chr2_3:34334623-34334642 Msa0288730:intron 25.0%
! AGAAAATAGCTTATATGAGT+GGG + chr2_3:34334961-34334980 Msa0288730:intron 25.0%
! TTATATCTAGCATAAGACAA+TGG + chr2_3:34334999-34335018 Msa0288730:intron 25.0%
! TATATCTAGCATAAGACAAT+GGG + chr2_3:34335000-34335019 Msa0288730:intron 25.0%
! TTGAACAAAAATCCTTGTAA+AGG - chr2_3:34335135-34335154 None:intergenic 25.0%
!!! GCTATTTTCAACTTATATTC+AGG + chr2_3:34335191-34335210 Msa0288730:intron 25.0%
! TTTGTATAATTGTGTGACTA+CGG - chr2_3:34335282-34335301 None:intergenic 25.0%
!! AAAATTTTGTACACCGAAAT+TGG + chr2_3:34335368-34335387 Msa0288730:intron 25.0%
! TTGCATATACCAAATCTTAA+GGG - chr2_3:34335412-34335431 None:intergenic 25.0%
! GAGATTTGAAGAATTATTTG+GGG - chr2_3:34335749-34335768 None:intergenic 25.0%
! GGAGATTTGAAGAATTATTT+GGG - chr2_3:34335750-34335769 None:intergenic 25.0%
! TGGAGATTTGAAGAATTATT+TGG - chr2_3:34335751-34335770 None:intergenic 25.0%
! ACATAAGATGATGTGTAAAT+TGG + chr2_3:34335799-34335818 Msa0288730:intron 25.0%
! CATAAGATGATGTGTAAATT+GGG + chr2_3:34335800-34335819 Msa0288730:intron 25.0%
! TAGATATGCAATCTTCAAAT+GGG - chr2_3:34336149-34336168 None:intergenic 25.0%
! ATAGATATGCAATCTTCAAA+TGG - chr2_3:34336150-34336169 None:intergenic 25.0%
! CTTCTTCTTCTTTAAATTGA+TGG - chr2_3:34336452-34336471 None:intergenic 25.0%
! AGAATGTGATCTGTAAAATA+TGG + chr2_3:34336553-34336572 Msa0288730:intron 25.0%
! GAATGTGATCTGTAAAATAT+GGG + chr2_3:34336554-34336573 Msa0288730:intron 25.0%
! TGAAATTTGACGGAAAAATT+TGG + chr2_3:34336620-34336639 Msa0288730:intron 25.0%
! GAAATTTGACGGAAAAATTT+GGG + chr2_3:34336621-34336640 Msa0288730:intron 25.0%
! AATGGTTAATTAGTTGAGTT+TGG - chr2_3:34336778-34336797 None:intergenic 25.0%
! AAAACAATTATTCTGTAACC+AGG + chr2_3:34336876-34336895 Msa0288730:intron 25.0%
! TAAAATAATCTATCCATACC+TGG - chr2_3:34336897-34336916 None:intergenic 25.0%
!! AGGTATGGATAGATTATTTT+AGG + chr2_3:34336896-34336915 Msa0288730:intron 25.0%
!!! GGTATGGATAGATTATTTTA+GGG + chr2_3:34336897-34336916 Msa0288730:intron 25.0%
! ACGATCTTATGAAAATATCA+TGG + chr2_3:34337028-34337047 Msa0288730:intron 25.0%
! TATGAAAATATCATGGTGTT+TGG + chr2_3:34337035-34337054 Msa0288730:intron 25.0%
! TTAGTTCATGAACAGATAAA+AGG - chr2_3:34337392-34337411 None:intergenic 25.0%
! CAAGATATTATTCCAATTCT+AGG + chr2_3:34337602-34337621 Msa0288730:intron 25.0%
!! TAATTTTTCTTTCATGCTGA+TGG + chr2_3:34337907-34337926 Msa0288730:intron 25.0%
! TATGAAAAATGCTCAAAACT+AGG + chr2_3:34338123-34338142 Msa0288730:intron 25.0%
! ATGAAAAATGCTCAAAACTA+GGG + chr2_3:34338124-34338143 Msa0288730:intron 25.0%
!!! TTTTGACTTTTTGTATTTGG+TGG - chr2_3:34338173-34338192 None:intergenic 25.0%
! CTATGAAAAACATAATATCC+TGG - chr2_3:34338259-34338278 None:intergenic 25.0%
! CAATGATAAATTGATGAAGT+TGG - chr2_3:34338286-34338305 None:intergenic 25.0%
!! AAAGGAAAAAACTTTTGACA+CGG + chr2_3:34338398-34338417 Msa0288730:intron 25.0%
! ATGAATATCTTAGTACACAT+TGG - chr2_3:34338537-34338556 None:intergenic 25.0%
! GTGTCTAACACATAAATATT+GGG - chr2_3:34338662-34338681 None:intergenic 25.0%
! AGTGTCTAACACATAAATAT+TGG - chr2_3:34338663-34338682 None:intergenic 25.0%
! TTAGATAAAACATCAACATC+AGG - chr2_3:34338710-34338729 None:intergenic 25.0%
! AAGAATGTAAAAAAACACCA+AGG - chr2_3:34338771-34338790 None:intergenic 25.0%
! AGTGAGTATATTTAATCAAC+AGG + chr2_3:34338918-34338937 Msa0288730:intron 25.0%
! TACTTAATGCTTCATTGAAT+TGG - chr2_3:34339244-34339263 None:intergenic 25.0%
! TACACCAACATTAAACTAAA+AGG + chr2_3:34339342-34339361 Msa0288730:intron 25.0%
! ACACCAACATTAAACTAAAA+GGG + chr2_3:34339343-34339362 Msa0288730:intron 25.0%
! TGTGATAAAAGGAAAAAACA+AGG + chr2_3:34339375-34339394 Msa0288730:intron 25.0%
! TAGTGATCAGTACAAAAAAT+GGG + chr2_3:34340072-34340091 Msa0288730:CDS 25.0%
! TGAAACATTACATAAGATTG+AGG - chr2_3:34340239-34340258 None:intergenic 25.0%
!!! TTTGTTTTGATTCAATTCCT+TGG - chr2_3:34340329-34340348 None:intergenic 25.0%
! AGGAATTGAATCAAAACAAA+TGG + chr2_3:34340329-34340348 Msa0288730:intron 25.0%
! GGAAGAAAAAAAATCATTGA+TGG - chr2_3:34340539-34340558 None:intergenic 25.0%
!!! TTTTTTTCTTCCATTTCCAA+TGG + chr2_3:34340547-34340566 Msa0288730:intron 25.0%
! AAGAACAGTTGTAATGAATT+GGG + chr2_3:34340585-34340604 Msa0288730:intron 25.0%
! AAAATTCCACCATATATCAT+TGG - chr2_3:34340658-34340677 None:intergenic 25.0%
! AAAAAGATTAAGCAATTTCC+CGG - chr2_3:34340961-34340980 None:intergenic 25.0%
! CTTAATCCATAACCAAAAAA+GGG - chr2_3:34341163-34341182 None:intergenic 25.0%
! ACTTAATCCATAACCAAAAA+AGG - chr2_3:34341164-34341183 None:intergenic 25.0%
CAATTGAGAAGAATACATAG+AGG - chr2_3:34334348-34334367 None:intergenic 30.0%
TGAAAGAAAGAATCGAAAGA+AGG + chr2_3:34334682-34334701 Msa0288730:five_prime_UTR 30.0%
GAGAAAATAGCTTATATGAG+TGG + chr2_3:34334960-34334979 Msa0288730:intron 30.0%
ATAAGACAATGGGTAGATTA+TGG + chr2_3:34335010-34335029 Msa0288730:intron 30.0%
ACAAAAATCCTTGTAAAGGA+TGG - chr2_3:34335131-34335150 None:intergenic 30.0%
!! TTCGGTGTACAAAATTTTGA+GGG - chr2_3:34335366-34335385 None:intergenic 30.0%
!! TTTCGGTGTACAAAATTTTG+AGG - chr2_3:34335367-34335386 None:intergenic 30.0%
ATTCCTACACAAACCAATTT+CGG - chr2_3:34335384-34335403 None:intergenic 30.0%
CTTGCATATACCAAATCTTA+AGG - chr2_3:34335413-34335432 None:intergenic 30.0%
! CTCAGAAGTATATACAGTTT+GGG - chr2_3:34335604-34335623 None:intergenic 30.0%
ACAACATAACCTTCACAAAT+TGG - chr2_3:34335946-34335965 None:intergenic 30.0%
ATTTGTGAAGGTTATGTTGT+TGG + chr2_3:34335946-34335965 Msa0288730:intron 30.0%
TAACAAATCCTTGTAAAGGA+TGG - chr2_3:34336085-34336104 None:intergenic 30.0%
AGAACCAGTATATCATTTGT+GGG - chr2_3:34336229-34336248 None:intergenic 30.0%
TCAGAATGTTTATCGTTTGA+GGG - chr2_3:34336527-34336546 None:intergenic 30.0%
TTCAGAATGTTTATCGTTTG+AGG - chr2_3:34336528-34336547 None:intergenic 30.0%
AGGATGAAACTGAAATTTGA+CGG + chr2_3:34336610-34336629 Msa0288730:intron 30.0%
!! GTCTAATTTGCTTAGTTCAA+CGG - chr2_3:34336684-34336703 None:intergenic 30.0%
ATTTCAACCGTGGTAAAAAA+TGG - chr2_3:34336796-34336815 None:intergenic 30.0%
AATTATTCTGTAACCAGGTA+TGG + chr2_3:34336881-34336900 Msa0288730:intron 30.0%
! CTTTGTTTCACACTATACAT+TGG + chr2_3:34337058-34337077 Msa0288730:intron 30.0%
TTCACACTATACATTGGAAA+AGG + chr2_3:34337064-34337083 Msa0288730:intron 30.0%
! TTAGTTGTTGCTATTCTTCT+TGG + chr2_3:34337347-34337366 Msa0288730:intron 30.0%
TGAACAGATAAAAGGAAAGA+GGG - chr2_3:34337384-34337403 None:intergenic 30.0%
ATGAACAGATAAAAGGAAAG+AGG - chr2_3:34337385-34337404 None:intergenic 30.0%
! TAGGAACTGTCTAAAACTAA+AGG - chr2_3:34337429-34337448 None:intergenic 30.0%
ACTGCAACAGTATTGTTAAT+CGG + chr2_3:34337506-34337525 Msa0288730:CDS 30.0%
ATGAAAACATACAACTTTGG+AGG - chr2_3:34337867-34337886 None:intergenic 30.0%
GTGATGAAAACATACAACTT+TGG - chr2_3:34337870-34337889 None:intergenic 30.0%
AAAAAGAGAAGAATGACGAA+AGG - chr2_3:34337991-34338010 None:intergenic 30.0%
TGAAAAATGCTCAAAACTAG+GGG + chr2_3:34338125-34338144 Msa0288730:intron 30.0%
! AATAAGATGACTTGCATTGT+TGG + chr2_3:34338435-34338454 Msa0288730:intron 30.0%
CTAACACATAAATATTGGGA+TGG - chr2_3:34338658-34338677 None:intergenic 30.0%
!!! TAATTGGTTTTCTTCTTCCT+TGG + chr2_3:34338751-34338770 Msa0288730:intron 30.0%
TTTACATTCTTAGTTAGTGG+TGG + chr2_3:34338780-34338799 Msa0288730:intron 30.0%
!!! AAGTATTGAGAACTTTTGAG+AGG + chr2_3:34338869-34338888 Msa0288730:intron 30.0%
ATTCTCATAACTGAACTACA+TGG - chr2_3:34338980-34338999 None:intergenic 30.0%
ACTGTCAGTAAATTCATGTT+TGG + chr2_3:34339010-34339029 Msa0288730:intron 30.0%
CTGTCAGTAAATTCATGTTT+GGG + chr2_3:34339011-34339030 Msa0288730:intron 30.0%
!! TGTTGATTTAAGAGAGACTA+GGG - chr2_3:34339071-34339090 None:intergenic 30.0%
!! ATGTTGATTTAAGAGAGACT+AGG - chr2_3:34339072-34339091 None:intergenic 30.0%
GAAATAGTTTAACTGTCTTG+TGG - chr2_3:34339144-34339163 None:intergenic 30.0%
! AAGTCTAAAATCAACCAGAA+TGG + chr2_3:34339218-34339237 Msa0288730:intron 30.0%
ATAGTTGTCATTCAAGACTA+AGG - chr2_3:34339300-34339319 None:intergenic 30.0%
!!! TAGCCCTTTTAGTTTAATGT+TGG - chr2_3:34339349-34339368 None:intergenic 30.0%
!! TAATTCCAGAGAAGCATTAA+TGG - chr2_3:34339432-34339451 None:intergenic 30.0%
! TTTTACTTTGTCTCTTCTCT+TGG - chr2_3:34339457-34339476 None:intergenic 30.0%
! TGTGCTGATACATATTTAGA+CGG + chr2_3:34339588-34339607 Msa0288730:intron 30.0%
GAGTATATACTTGAAACAGT+TGG - chr2_3:34339657-34339676 None:intergenic 30.0%
! TTTTTGTTCATTAGGAGGTA+AGG - chr2_3:34339795-34339814 None:intergenic 30.0%
!! AATGCTTTTTGTTCATTAGG+AGG - chr2_3:34339800-34339819 None:intergenic 30.0%
!! TGGAATGCTTTTTGTTCATT+AGG - chr2_3:34339803-34339822 None:intergenic 30.0%
!! GAACAAAAAGCATTCCATAA+CGG + chr2_3:34339806-34339825 Msa0288730:intron 30.0%
!! AACAAAAAGCATTCCATAAC+GGG + chr2_3:34339807-34339826 Msa0288730:intron 30.0%
!! CTTCATTTTTATCGTTATGC+AGG + chr2_3:34339983-34340002 Msa0288730:intron 30.0%
CTAGTGATCAGTACAAAAAA+TGG + chr2_3:34340071-34340090 Msa0288730:CDS 30.0%
!! AAAACAAATGGTTCTGACAT+TGG + chr2_3:34340341-34340360 Msa0288730:intron 30.0%
TGATACTATGCCTTAGAATA+TGG + chr2_3:34340500-34340519 Msa0288730:intron 30.0%
AATCACGTATCCATATTCTA+AGG - chr2_3:34340513-34340532 None:intergenic 30.0%
ATACTATGAACCATTGGAAA+TGG - chr2_3:34340560-34340579 None:intergenic 30.0%
TCATCAATACTATGAACCAT+TGG - chr2_3:34340566-34340585 None:intergenic 30.0%
GAAGAACAGTTGTAATGAAT+TGG + chr2_3:34340584-34340603 Msa0288730:intron 30.0%
AGTAGTCTACCAATGATATA+TGG + chr2_3:34340646-34340665 Msa0288730:intron 30.0%
! CAATTAACTTTGTGTTTTGC+AGG + chr2_3:34340764-34340783 Msa0288730:intron 30.0%
GCATCTTATATTACCATCAA+AGG - chr2_3:34340838-34340857 None:intergenic 30.0%
TATAAGATGCGAAGTTGAAA+TGG + chr2_3:34340848-34340867 Msa0288730:CDS 30.0%
!! TTGCTTAATCTTTTTCGTAC+AGG + chr2_3:34340966-34340985 Msa0288730:CDS 30.0%
AATGGTCAGTGAATATTTCT+GGG - chr2_3:34341023-34341042 None:intergenic 30.0%
!!! GTTTAACCCTTTTTTGGTTA+TGG + chr2_3:34341154-34341173 Msa0288730:three_prime_UTR 30.0%
GAAAATTAGGTTTCGAAGAC+TGG - chr2_3:34334263-34334282 None:intergenic 35.0%
!! AAGAGCGTTGAGAGAAAATT+AGG - chr2_3:34334276-34334295 None:intergenic 35.0%
AGAACGAAGAAAATTGAGGA+CGG - chr2_3:34334304-34334323 None:intergenic 35.0%
AGAGAGAACGAAGAAAATTG+AGG - chr2_3:34334308-34334327 None:intergenic 35.0%
AAAAGCAGCGTTATAAGTGA+TGG + chr2_3:34334705-34334724 Msa0288730:five_prime_UTR 35.0%
!! GCGTTATAAGTGATGGATTA+TGG + chr2_3:34334712-34334731 Msa0288730:five_prime_UTR 35.0%
ATTATGGAACGATCCTTTCA+TGG + chr2_3:34334728-34334747 Msa0288730:exon 35.0%
AAATGACATTGAGAGGAGAA+TGG - chr2_3:34334828-34334847 None:intergenic 35.0%
TGTGAGTAAATGACATTGAG+AGG - chr2_3:34334835-34334854 None:intergenic 35.0%
GGATTATTGTCCATTCGATA+TGG + chr2_3:34335034-34335053 Msa0288730:intron 35.0%
AAAATCCTTGTAAAGGATGG+TGG - chr2_3:34335128-34335147 None:intergenic 35.0%
! TATGGCCGTCTCAAATATTT+TGG + chr2_3:34335319-34335338 Msa0288730:intron 35.0%
GAATTTGAGCCCTTAAGATT+TGG + chr2_3:34335400-34335419 Msa0288730:intron 35.0%
TGAGTTGTACCAAAAATGCA+GGG - chr2_3:34335520-34335539 None:intergenic 35.0%
! TTGAGTTGTACCAAAAATGC+AGG - chr2_3:34335521-34335540 None:intergenic 35.0%
GAAGTATATACAGTTTGGGA+GGG - chr2_3:34335600-34335619 None:intergenic 35.0%
! AGAAGTATATACAGTTTGGG+AGG - chr2_3:34335601-34335620 None:intergenic 35.0%
! CCTCAGAAGTATATACAGTT+TGG - chr2_3:34335605-34335624 None:intergenic 35.0%
CCAAACTGTATATACTTCTG+AGG + chr2_3:34335602-34335621 Msa0288730:intron 35.0%
CTTTCTTTGACACAAATCAG+TGG + chr2_3:34335698-34335717 Msa0288730:intron 35.0%
! GTATTTTCAAATATCCGCCA+TGG + chr2_3:34335883-34335902 Msa0288730:intron 35.0%
!! AGATATCACCAGTGGATTTT+TGG + chr2_3:34335907-34335926 Msa0288730:intron 35.0%
!! GGATTTTTGGATAACCGATA+TGG + chr2_3:34335920-34335939 Msa0288730:intron 35.0%
GTTAGCTACAATGTTGTCAA+TGG - chr2_3:34336016-34336035 None:intergenic 35.0%
ACAATCTTCTTCCCTTCAAT+TGG + chr2_3:34336116-34336135 Msa0288730:intron 35.0%
TGCCTCATGGGTTTAATAAT+GGG - chr2_3:34336188-34336207 None:intergenic 35.0%
TTGCCTCATGGGTTTAATAA+TGG - chr2_3:34336189-34336208 None:intergenic 35.0%
TCAAGAATATGTTGCCTCAT+GGG - chr2_3:34336200-34336219 None:intergenic 35.0%
ATCAAGAATATGTTGCCTCA+TGG - chr2_3:34336201-34336220 None:intergenic 35.0%
CAGAACCAGTATATCATTTG+TGG - chr2_3:34336230-34336249 None:intergenic 35.0%
!! TGCAATTAGAGCCATTTTCA+TGG + chr2_3:34336317-34336336 Msa0288730:intron 35.0%
GAAGAGTCTTAAAGAAACAG+AGG + chr2_3:34336480-34336499 Msa0288730:intron 35.0%
!! AAACAGAGGAGTATTCTCAA+CGG + chr2_3:34336494-34336513 Msa0288730:intron 35.0%
TGTGATCTGTAAAATATGGG+AGG + chr2_3:34336557-34336576 Msa0288730:intron 35.0%
AATGTGAGACAGATTGATGA+AGG + chr2_3:34336590-34336609 Msa0288730:intron 35.0%
! TGATTTGTCGATTACTGGTT+TGG - chr2_3:34336740-34336759 None:intergenic 35.0%
!! TCAGTTGATTTGTCGATTAC+TGG - chr2_3:34336745-34336764 None:intergenic 35.0%
AACAAACACAATTTCAACCG+TGG - chr2_3:34336806-34336825 None:intergenic 35.0%
GATAGAAGATCTCACGAAAA+AGG - chr2_3:34336993-34337012 None:intergenic 35.0%
ATACATTGGAAAAGGACATG+AGG + chr2_3:34337072-34337091 Msa0288730:intron 35.0%
AATCTGTATGTGTATGTGTG+TGG + chr2_3:34337190-34337209 Msa0288730:intron 35.0%
GTGTATAACAGACAAAACCA+TGG - chr2_3:34337226-34337245 None:intergenic 35.0%
CTGCAACAGTATTGTTAATC+GGG + chr2_3:34337507-34337526 Msa0288730:CDS 35.0%
GCTTCCAAATGTTGGAAAAT+CGG + chr2_3:34337529-34337548 Msa0288730:CDS 35.0%
! TATTCCAATTCTAGGGAAAC+AGG + chr2_3:34337610-34337629 Msa0288730:intron 35.0%
! GCACTCTTTATCATTTTGCT+AGG + chr2_3:34337824-34337843 Msa0288730:intron 35.0%
GCATATTTCCAAATGTAAGC+TGG + chr2_3:34338305-34338324 Msa0288730:intron 35.0%
ACTGAAATCCAGCTTACATT+TGG - chr2_3:34338316-34338335 None:intergenic 35.0%
! GTTGATTTAAGAGAGACTAG+GGG - chr2_3:34339070-34339089 None:intergenic 35.0%
!! TAAGCTCTGTTTTTCACACA+TGG + chr2_3:34339271-34339290 Msa0288730:intron 35.0%
TAAGAGACAAGAGAAAGAGA+TGG + chr2_3:34339403-34339422 Msa0288730:intron 35.0%
ACGCTTCTCAATATGCATTA+TGG + chr2_3:34339496-34339515 Msa0288730:intron 35.0%
TTCAGTCCATTTCATGAAAC+TGG - chr2_3:34339526-34339545 None:intergenic 35.0%
TGTATCAGCACAATGTTGTT+GGG - chr2_3:34339580-34339599 None:intergenic 35.0%
ATGTATCAGCACAATGTTGT+TGG - chr2_3:34339581-34339600 None:intergenic 35.0%
ATGTACTAGCTAGAGCAAAA+TGG - chr2_3:34339634-34339653 None:intergenic 35.0%
TAAGGTGTACTTGTTTGAGA+AGG - chr2_3:34339777-34339796 None:intergenic 35.0%
AATAAACACTTGTCCCGTTA+TGG - chr2_3:34339823-34339842 None:intergenic 35.0%
CGTGTGTTTCTTATCTGATT+TGG + chr2_3:34339959-34339978 Msa0288730:intron 35.0%
ACTACACATCAAGCTAGAAA+AGG + chr2_3:34340294-34340313 Msa0288730:intron 35.0%
ACATCAAGCTAGAAAAGGAA+AGG + chr2_3:34340299-34340318 Msa0288730:intron 35.0%
!! GTTGGTTTGTATGCTATTGA+TGG + chr2_3:34340441-34340460 Msa0288730:intron 35.0%
AGTCTACCAATGATATATGG+TGG + chr2_3:34340649-34340668 Msa0288730:intron 35.0%
! ATTTTCTGCGATATCTTCCT+CGG + chr2_3:34340689-34340708 Msa0288730:intron 35.0%
GAAACGATTTCATCCTTTGA+TGG + chr2_3:34340822-34340841 Msa0288730:CDS 35.0%
CAATGGTCAGTGAATATTTC+TGG - chr2_3:34341024-34341043 None:intergenic 35.0%
AAATATTCACTGACCATTGC+AGG + chr2_3:34341025-34341044 Msa0288730:exon 35.0%
TTGCTGTGATATGAGGAGAT+GGG - chr2_3:34334228-34334247 None:intergenic 40.0%
! GTTTGTGTTGCTGTGATATG+AGG - chr2_3:34334235-34334254 None:intergenic 40.0%
GTTACATACCACCCAGATTT+GGG + chr2_3:34334584-34334603 Msa0288730:intron 40.0%
CAAAGGGATTCTTTCTGCAA+TGG - chr2_3:34334769-34334788 None:intergenic 40.0%
CATTGCAGAAAGAATCCCTT+TGG + chr2_3:34334767-34334786 Msa0288730:CDS 40.0%
GGACTATGAGATCAACCAAA+GGG - chr2_3:34334785-34334804 None:intergenic 40.0%
TGGACTATGAGATCAACCAA+AGG - chr2_3:34334786-34334805 None:intergenic 40.0%
GAAGTAACGAACCTGTAAAG+TGG - chr2_3:34334913-34334932 None:intergenic 40.0%
AGACAATGGGTAGATTATGG+TGG + chr2_3:34335013-34335032 Msa0288730:intron 40.0%
GTGGCAAGCTTCTAAACAAT+GGG - chr2_3:34335109-34335128 None:intergenic 40.0%
GGCCTCCAAAATATTTGAGA+CGG - chr2_3:34335327-34335346 None:intergenic 40.0%
!! ACACCGAAATTGGTTTGTGT+AGG + chr2_3:34335378-34335397 Msa0288730:intron 40.0%
!! ATACAGTTTGGGAGGGTATT+AGG - chr2_3:34335593-34335612 None:intergenic 40.0%
GAGTATGTGAAGTGTGAAGT+TGG + chr2_3:34335630-34335649 Msa0288730:intron 40.0%
GAAACTATTCAAGTCGGCAA+AGG - chr2_3:34335724-34335743 None:intergenic 40.0%
AGAATAGGAGTGATCAGCAT+AGG + chr2_3:34335837-34335856 Msa0288730:intron 40.0%
TCGGTTATCCAAAAATCCAC+TGG - chr2_3:34335918-34335937 None:intergenic 40.0%
CCTTCACAAATTGGCCATAT+CGG - chr2_3:34335937-34335956 None:intergenic 40.0%
GTGAAGGTTATGTTGTTGGT+CGG + chr2_3:34335950-34335969 Msa0288730:intron 40.0%
AGCTACAATGTTGTCAATGG+CGG - chr2_3:34336013-34336032 None:intergenic 40.0%
ATCCTTGTAAAGGATGGTAG+CGG - chr2_3:34336079-34336098 None:intergenic 40.0%
TCTTCTTCCCTTCAATTGGT+TGG + chr2_3:34336120-34336139 Msa0288730:intron 40.0%
TCCCCATTATTAAACCCATG+AGG + chr2_3:34336183-34336202 Msa0288730:intron 40.0%
GCCTCATGGGTTTAATAATG+GGG - chr2_3:34336187-34336206 None:intergenic 40.0%
GAGGCAACATATTCTTGATG+TGG + chr2_3:34336202-34336221 Msa0288730:intron 40.0%
TGGACCCACAAATGATATAC+TGG + chr2_3:34336222-34336241 Msa0288730:intron 40.0%
!! TATACTGGTTCTGCTTCTGT+CGG + chr2_3:34336237-34336256 Msa0288730:intron 40.0%
AAAAATTGCAACTGCTGGTG+TGG - chr2_3:34336345-34336364 None:intergenic 40.0%
! AGTTGCAATTTTTCCCTGCA+AGG + chr2_3:34336352-34336371 Msa0288730:intron 40.0%
! GTTGCAATTTTTCCCTGCAA+GGG + chr2_3:34336353-34336372 Msa0288730:intron 40.0%
! TTGCAATTTTTCCCTGCAAG+GGG + chr2_3:34336354-34336373 Msa0288730:intron 40.0%
TCTGTAAAATATGGGAGGAG+AGG + chr2_3:34336562-34336581 Msa0288730:intron 40.0%
!! TACTGGTTTGGAAAGGATGT+TGG - chr2_3:34336728-34336747 None:intergenic 40.0%
!! TGTCGATTACTGGTTTGGAA+AGG - chr2_3:34336735-34336754 None:intergenic 40.0%
GAAACGAACTGCATATCTTG+TGG + chr2_3:34336919-34336938 Msa0288730:CDS 40.0%
! AGTTCCTAAGCCTTATACAG+CGG + chr2_3:34337441-34337460 Msa0288730:intron 40.0%
TTAATCGGGCTTCCAAATGT+TGG + chr2_3:34337521-34337540 Msa0288730:CDS 40.0%
!!! AGTGCCGATTTTCCAACATT+TGG - chr2_3:34337536-34337555 None:intergenic 40.0%
ACTAATGCCTTGCATCATGT+TGG + chr2_3:34337557-34337576 Msa0288730:CDS 40.0%
CTAATGCCTTGCATCATGTT+GGG + chr2_3:34337558-34337577 Msa0288730:CDS 40.0%
AATTCTCCCAACATGATGCA+AGG - chr2_3:34337567-34337586 None:intergenic 40.0%
TTAGCCTGTTTCCCTAGAAT+TGG - chr2_3:34337617-34337636 None:intergenic 40.0%
CTCAACGTTTGAGAAACAAG+TGG + chr2_3:34337645-34337664 Msa0288730:intron 40.0%
CCATCATGTTGAACAGACAA+CGG + chr2_3:34338047-34338066 Msa0288730:intron 40.0%
!! TGTATTTGGTGGTGTCGATA+CGG - chr2_3:34338162-34338181 None:intergenic 40.0%
TACCAGCATAGATAAGAACC+AGG + chr2_3:34338238-34338257 Msa0288730:intron 40.0%
! ATCCTGGTTCTTATCTATGC+TGG - chr2_3:34338243-34338262 None:intergenic 40.0%
AGTTGTAATGCACTGAACAC+AGG + chr2_3:34338333-34338352 Msa0288730:intron 40.0%
CATTCTTAGTTAGTGGTGGT+TGG + chr2_3:34338784-34338803 Msa0288730:intron 40.0%
! TTTTGTGTGTGTCGAGCTAT+AGG + chr2_3:34338825-34338844 Msa0288730:intron 40.0%
TAATCAACAGGCAACCATTC+TGG + chr2_3:34338930-34338949 Msa0288730:intron 40.0%
AATCAACAGGCAACCATTCT+GGG + chr2_3:34338931-34338950 Msa0288730:intron 40.0%
GTGAAATCAACAACCCAGAA+TGG - chr2_3:34338947-34338966 None:intergenic 40.0%
!! TCTGGGTTGTTGATTTCACT+TGG + chr2_3:34338948-34338967 Msa0288730:intron 40.0%
TAAGAGAGACTAGGGGTTTA+AGG - chr2_3:34339063-34339082 None:intergenic 40.0%
GCAATCTACTTAACGTCACA+AGG + chr2_3:34339092-34339111 Msa0288730:intron 40.0%
CTTCATTGAATTGGCCATTC+TGG - chr2_3:34339235-34339254 None:intergenic 40.0%
! GGCTAGCTACTTGTGATAAA+AGG + chr2_3:34339364-34339383 Msa0288730:intron 40.0%
!! TTCCAGAGAAGCATTAATGG+AGG - chr2_3:34339429-34339448 None:intergenic 40.0%
!! TGCATATTGAGAAGCGTTGT+AGG - chr2_3:34339493-34339512 None:intergenic 40.0%
GGAAAGCCAGTTTCATGAAA+TGG + chr2_3:34339517-34339536 Msa0288730:intron 40.0%
CAGCTCATTAGATTGCACTA+TGG - chr2_3:34339551-34339570 None:intergenic 40.0%
GTGTACTTGTTTGAGAAGGT+GGG - chr2_3:34339773-34339792 None:intergenic 40.0%
ACGGGACAAGTGTTTATTTC+TGG + chr2_3:34339825-34339844 Msa0288730:intron 40.0%
TATCGTTATGCAGGAGCAAT+TGG + chr2_3:34339992-34340011 Msa0288730:intron 40.0%
ATCGTTATGCAGGAGCAATT+GGG + chr2_3:34339993-34340012 Msa0288730:intron 40.0%
ATACCTGTGTGTGATCGTTA+GGG - chr2_3:34340195-34340214 None:intergenic 40.0%
AGAAAAGGAAAGGACAACCA+AGG + chr2_3:34340309-34340328 Msa0288730:intron 40.0%
ACAATGAAAAATCCCCATGC+AGG - chr2_3:34340481-34340500 None:intergenic 40.0%
! TTTTCTGCGATATCTTCCTC+GGG + chr2_3:34340690-34340709 Msa0288730:intron 40.0%
!! GAAATGGAAGCACTTATTGC+TGG + chr2_3:34340864-34340883 Msa0288730:CDS 40.0%
!! GTCAGTGAATATTTCTGGGA+AGG - chr2_3:34341019-34341038 None:intergenic 40.0%
GTTGCTGTGATATGAGGAGA+TGG - chr2_3:34334229-34334248 None:intergenic 45.0%
CGTTACATACCACCCAGATT+TGG + chr2_3:34334583-34334602 Msa0288730:intron 45.0%
CATCCAAACAGCCCAAATCT+GGG - chr2_3:34334598-34334617 None:intergenic 45.0%
TCATCCAAACAGCCCAAATC+TGG - chr2_3:34334599-34334618 None:intergenic 45.0%
TAAATGGCAGCGACGCAATT+TGG + chr2_3:34334639-34334658 Msa0288730:intron 45.0%
! CGAGTTGAAGCAACCATGAA+AGG - chr2_3:34334744-34334763 None:intergenic 45.0%
TTAGCTACAATGGCAGAAGG+CGG - chr2_3:34335061-34335080 None:intergenic 45.0%
GACTTAGCTACAATGGCAGA+AGG - chr2_3:34335064-34335083 None:intergenic 45.0%
CGACTTCGACTTAGCTACAA+TGG - chr2_3:34335071-34335090 None:intergenic 45.0%
GCAAGCTTCTAAACAATGGG+TGG - chr2_3:34335106-34335125 None:intergenic 45.0%
GGTGGCAAGCTTCTAAACAA+TGG - chr2_3:34335110-34335129 None:intergenic 45.0%
!! GGCCGTCTCAAATATTTTGG+AGG + chr2_3:34335322-34335341 Msa0288730:intron 45.0%
ACAGGGCCTCTAAACTTTGA+GGG - chr2_3:34335473-34335492 None:intergenic 45.0%
TTGTACCAAAAATGCAGGGC+CGG - chr2_3:34335516-34335535 None:intergenic 45.0%
TGTGAAGTGTGAAGTTGGCA+TGG + chr2_3:34335635-34335654 Msa0288730:intron 45.0%
GGGGCTGAAACTATTCAAGT+CGG - chr2_3:34335730-34335749 None:intergenic 45.0%
TAAATTGGGACTTGATCCCC+TGG + chr2_3:34335814-34335833 Msa0288730:intron 45.0%
TGATCACTCCTATTCTCCAG+GGG - chr2_3:34335833-34335852 None:intergenic 45.0%
CTGATCACTCCTATTCTCCA+GGG - chr2_3:34335834-34335853 None:intergenic 45.0%
CCGATATGGCCAATTTGTGA+AGG + chr2_3:34335934-34335953 Msa0288730:intron 45.0%
TGGTCGGTATGTCAGATTGT+TGG + chr2_3:34335966-34335985 Msa0288730:intron 45.0%
!! ATGTTGTCAATGGCGGATGA+CGG - chr2_3:34336006-34336025 None:intergenic 45.0%
TCCTTGTAAAGGATGGTAGC+GGG - chr2_3:34336078-34336097 None:intergenic 45.0%
TGGGCATCCAACCAATTGAA+GGG - chr2_3:34336130-34336149 None:intergenic 45.0%
ATGGGCATCCAACCAATTGA+AGG - chr2_3:34336131-34336150 None:intergenic 45.0%
CAGGGAAAAATTGCAACTGC+TGG - chr2_3:34336350-34336369 None:intergenic 45.0%
! AATTTTTCCCTGCAAGGGGA+TGG + chr2_3:34336358-34336377 Msa0288730:intron 45.0%
! ATTTTTCCCTGCAAGGGGAT+GGG + chr2_3:34336359-34336378 Msa0288730:intron 45.0%
GTCTGATAGGCATGCTTTGA+TGG - chr2_3:34336391-34336410 None:intergenic 45.0%
GTGTATGCGTCACTATTGGT+CGG - chr2_3:34336706-34336725 None:intergenic 45.0%
GTTGGTGTATGCGTCACTAT+TGG - chr2_3:34336710-34336729 None:intergenic 45.0%
TGGAGTCGATGCTCATAACA+AGG + chr2_3:34336939-34336958 Msa0288730:CDS 45.0%
!! TAACAAGGAGAGCATCAGAC+AGG + chr2_3:34336954-34336973 Msa0288730:CDS 45.0%
GAGATCTTCTATCGAGTCTC+AGG + chr2_3:34337000-34337019 Msa0288730:intron 45.0%
!! TGTGTGGCATGTTGTTTCCA+TGG + chr2_3:34337206-34337225 Msa0288730:intron 45.0%
CTAATGTCTTTAGTCTCCCC+TGG - chr2_3:34337771-34337790 None:intergenic 45.0%
CCGTTGTCTGTTCAACATGA+TGG - chr2_3:34338050-34338069 None:intergenic 45.0%
TGGCTAGCAATCTGAAAGGA+AGG - chr2_3:34338638-34338657 None:intergenic 45.0%
ACATCAACATCAGGAACCTC+AGG - chr2_3:34338701-34338720 None:intergenic 45.0%
TCTTAGTTAGTGGTGGTTGG+TGG + chr2_3:34338787-34338806 Msa0288730:intron 45.0%
! AACTGTCTTGTGGCTGCTTT+GGG - chr2_3:34339134-34339153 None:intergenic 45.0%
TAACTGTCTTGTGGCTGCTT+TGG - chr2_3:34339135-34339154 None:intergenic 45.0%
!! GAAGCGTTGTAGGAATGAGA+TGG - chr2_3:34339483-34339502 None:intergenic 45.0%
GGTGTACTTGTTTGAGAAGG+TGG - chr2_3:34339774-34339793 None:intergenic 45.0%
TCGTTATGCAGGAGCAATTG+GGG + chr2_3:34339994-34340013 Msa0288730:intron 45.0%
ATGGGCAAAGTTATCGAGCA+AGG + chr2_3:34340090-34340109 Msa0288730:CDS 45.0%
! AGCACTCTGTTGTGCTGTTA+AGG - chr2_3:34340132-34340151 None:intergenic 45.0%
! ACAGAGTGCTTGACTACATC+TGG + chr2_3:34340142-34340161 Msa0288730:CDS 45.0%
! CAGAGTGCTTGACTACATCT+GGG + chr2_3:34340143-34340162 Msa0288730:CDS 45.0%
AATCCCTAACGATCACACAC+AGG + chr2_3:34340189-34340208 Msa0288730:CDS 45.0%
GATACCTGTGTGTGATCGTT+AGG - chr2_3:34340196-34340215 None:intergenic 45.0%
TGCAAGATTGCATAAACCCG+AGG - chr2_3:34340709-34340728 None:intergenic 45.0%
! TTGTGTTTTGCAGGACGACA+TGG + chr2_3:34340773-34340792 Msa0288730:intron 45.0%
CTTCACGTTCAGTTGAAACG+TGG - chr2_3:34340917-34340936 None:intergenic 45.0%
TGAAGAAGATGCTCATGTCG+TGG + chr2_3:34340932-34340951 Msa0288730:CDS 45.0%
!! CTTTTTCGTACAGGTCGTCT+TGG + chr2_3:34340975-34340994 Msa0288730:CDS 45.0%
GAGACCAACACACAATGCAT+TGG - chr2_3:34341051-34341070 None:intergenic 45.0%
!! AATATAAAAAACAATTAAAT+TGG + chr2_3:34335153-34335172 Msa0288730:intron 5.0%
!!! AAATACAATTTTTATATTTT+GGG + chr2_3:34335446-34335465 Msa0288730:intron 5.0%
!! AGAATTAAAAAAAAAAAAAA+AGG + chr2_3:34338380-34338399 Msa0288730:intron 5.0%
!!! ATTTTTTTTTAATCTAATAA+AGG + chr2_3:34340379-34340398 Msa0288730:intron 5.0%
ACGCAATTTGGAAGGCGAGT+GGG + chr2_3:34334651-34334670 Msa0288730:five_prime_UTR 50.0%
TAGTCCATGTCACTGATGCG+AGG + chr2_3:34334799-34334818 Msa0288730:CDS 50.0%
GAATCCTCGCATCAGTGACA+TGG - chr2_3:34334806-34334825 None:intergenic 50.0%
CGCTTCTCGTTCCACTTTAC+AGG + chr2_3:34334899-34334918 Msa0288730:CDS 50.0%
AGAAGGCGGACCATATCGAA+TGG - chr2_3:34335047-34335066 None:intergenic 50.0%
GCTTGCCACCATCCTTTACA+AGG + chr2_3:34335120-34335139 Msa0288730:intron 50.0%
!! GAGGGCACTAGAAGAGAAGA+GGG - chr2_3:34335348-34335367 None:intergenic 50.0%
!! TGAGGGCACTAGAAGAGAAG+AGG - chr2_3:34335349-34335368 None:intergenic 50.0%
TTGGGGCCCTCAAAGTTTAG+AGG + chr2_3:34335464-34335483 Msa0288730:intron 50.0%
CACAGGGCCTCTAAACTTTG+AGG - chr2_3:34335474-34335493 None:intergenic 50.0%
ATAGCCCGCAGAACAACACA+GGG - chr2_3:34335490-34335509 None:intergenic 50.0%
GACTTGATCCCCTGGAGAAT+AGG + chr2_3:34335822-34335841 Msa0288730:intron 50.0%
GCTGATCACTCCTATTCTCC+AGG - chr2_3:34335835-34335854 None:intergenic 50.0%
ACTGGTGATATCTGCCATGG+CGG - chr2_3:34335900-34335919 None:intergenic 50.0%
TCCACTGGTGATATCTGCCA+TGG - chr2_3:34335903-34335922 None:intergenic 50.0%
!! GTAGCGGGCTTCTAGACAAT+GGG - chr2_3:34336063-34336082 None:intergenic 50.0%
TGCTTCTGTCGGAGCAACAT+TGG + chr2_3:34336248-34336267 Msa0288730:intron 50.0%
!! CTGGTGTGGTGCCATGAAAA+TGG - chr2_3:34336331-34336350 None:intergenic 50.0%
TTGTTTCCCATCCCCTTGCA+GGG - chr2_3:34336368-34336387 None:intergenic 50.0%
GGCAACTGCATCTGTCTGAT+AGG - chr2_3:34336404-34336423 None:intergenic 50.0%
ATCAGACAGATGCAGTTGCC+AGG + chr2_3:34336404-34336423 Msa0288730:intron 50.0%
AGATGCAGTTGCCAGGTAGA+AGG + chr2_3:34336411-34336430 Msa0288730:intron 50.0%
GATGCAGTTGCCAGGTAGAA+GGG + chr2_3:34336412-34336431 Msa0288730:intron 50.0%
ATGCAGTTGCCAGGTAGAAG+GGG + chr2_3:34336413-34336432 Msa0288730:intron 50.0%
GTTGGGAGAATTAGTGCTGC+AGG + chr2_3:34337575-34337594 Msa0288730:CDS 50.0%
GGGATGGCTAGCAATCTGAA+AGG - chr2_3:34338642-34338661 None:intergenic 50.0%
!! TCCAGCTGTTTTACCTCCTG+AGG + chr2_3:34338682-34338701 Msa0288730:CDS 50.0%
ACCTCAGGAGGTAAAACAGC+TGG - chr2_3:34338686-34338705 None:intergenic 50.0%
TCAACATCAGGAACCTCAGG+AGG - chr2_3:34338698-34338717 None:intergenic 50.0%
!! AGTGGTGGTTGGTGGTAGTA+TGG + chr2_3:34338795-34338814 Msa0288730:intron 50.0%
GTGTGTGTCGAGCTATAGGA+AGG + chr2_3:34338829-34338848 Msa0288730:intron 50.0%
GTGTCGAGCTATAGGAAGGA+CGG + chr2_3:34338833-34338852 Msa0288730:intron 50.0%
TGTCGAGCTATAGGAAGGAC+GGG + chr2_3:34338834-34338853 Msa0288730:intron 50.0%
! TCTTGTGGCTGCTTTGGGTT+TGG - chr2_3:34339129-34339148 None:intergenic 50.0%
GGCCTCCATTAATGCTTCTC+TGG + chr2_3:34339424-34339443 Msa0288730:intron 50.0%
AGGAGCAATTGGGGACTGTT+TGG + chr2_3:34340003-34340022 Msa0288730:intron 50.0%
GTGGAAAACTTCCTGCAACG+CGG - chr2_3:34340898-34340917 None:intergenic 50.0%
! CACAATGCATTGGCCTGCAA+TGG - chr2_3:34341041-34341060 None:intergenic 50.0%
CAGGCCAATGCATTGTGTGT+TGG + chr2_3:34341044-34341063 Msa0288730:intron 50.0%
CCAAACAGCCCAAATCTGGG+TGG - chr2_3:34334595-34334614 None:intergenic 55.0%
CCACCCAGATTTGGGCTGTT+TGG + chr2_3:34334592-34334611 Msa0288730:intron 55.0%
TGGCAGCGACGCAATTTGGA+AGG + chr2_3:34334643-34334662 Msa0288730:intron 55.0%
GACGCAATTTGGAAGGCGAG+TGG + chr2_3:34334650-34334669 Msa0288730:five_prime_UTR 55.0%
! AGAGGCCCTGTGTTGTTCTG+CGG + chr2_3:34335482-34335501 Msa0288730:intron 55.0%
CATAGCCCGCAGAACAACAC+AGG - chr2_3:34335491-34335510 None:intergenic 55.0%
! CTGTGTTGTTCTGCGGGCTA+TGG + chr2_3:34335489-34335508 Msa0288730:intron 55.0%
! TTGTTCTGCGGGCTATGGAC+CGG + chr2_3:34335494-34335513 Msa0288730:intron 55.0%
! ATGGACCGGCCCTGCATTTT+TGG + chr2_3:34335508-34335527 Msa0288730:intron 55.0%
GCCATGGCAGATATCACCAG+TGG + chr2_3:34335899-34335918 Msa0288730:intron 55.0%
AGATTGTTGGCCGTTCGCCA+TGG + chr2_3:34335979-34335998 Msa0288730:intron 55.0%
!! GGTAGCGGGCTTCTAGACAA+TGG - chr2_3:34336064-34336083 None:intergenic 55.0%
GCCCGCTACCATCCTTTACA+AGG + chr2_3:34336074-34336093 Msa0288730:intron 55.0%
! GTTGTTTCCCATCCCCTTGC+AGG - chr2_3:34336369-34336388 None:intergenic 55.0%
CCTGCCGCTGTATAAGGCTT+AGG - chr2_3:34337448-34337467 None:intergenic 55.0%
! CCTAAGCCTTATACAGCGGC+AGG + chr2_3:34337445-34337464 Msa0288730:CDS 55.0%
! AAGCCTTATACAGCGGCAGG+TGG + chr2_3:34337448-34337467 Msa0288730:CDS 55.0%
! AGCCTTATACAGCGGCAGGT+GGG + chr2_3:34337449-34337468 Msa0288730:CDS 55.0%
TTCCCACCTGCCGCTGTATA+AGG - chr2_3:34337454-34337473 None:intergenic 55.0%
AGCGGCAGGTGGGAAAATTG+AGG + chr2_3:34337459-34337478 Msa0288730:CDS 55.0%
CTACTGTGAGTCCAGAGCCA+GGG + chr2_3:34337751-34337770 Msa0288730:CDS 55.0%
TACTGTGAGTCCAGAGCCAG+GGG + chr2_3:34337752-34337771 Msa0288730:CDS 55.0%
TCTTTAGTCTCCCCTGGCTC+TGG - chr2_3:34337765-34337784 None:intergenic 55.0%
ATCCAGCAGCAGAACCTGCA+TGG + chr2_3:34340464-34340483 Msa0288730:intron 55.0%
TCCAGCAGCAGAACCTGCAT+GGG + chr2_3:34340465-34340484 Msa0288730:intron 55.0%
TTTGCAGGACGACATGGTGC+AGG + chr2_3:34340779-34340798 Msa0288730:intron 55.0%
TGGTCAGTTTACCGCGTTGC+AGG + chr2_3:34340884-34340903 Msa0288730:CDS 55.0%
GATGCTCATGTCGTGGTTGC+CGG + chr2_3:34340939-34340958 Msa0288730:CDS 55.0%
ATGCTCATGTCGTGGTTGCC+GGG + chr2_3:34340940-34340959 Msa0288730:CDS 55.0%
! GAGGCCCTGTGTTGTTCTGC+GGG + chr2_3:34335483-34335502 Msa0288730:intron 60.0%
!! GGATGACGGACCATGGCGAA+CGG - chr2_3:34335992-34336011 None:intergenic 60.0%
!! CAATGGCGGATGACGGACCA+TGG - chr2_3:34335999-34336018 None:intergenic 60.0%
AGTTGCCAGGTAGAAGGGGC+TGG + chr2_3:34336417-34336436 Msa0288730:intron 60.0%
TCACTCCAGCCCCTTCTACC+TGG - chr2_3:34336425-34336444 None:intergenic 60.0%
GCTACTGTGAGTCCAGAGCC+AGG + chr2_3:34337750-34337769 Msa0288730:CDS 60.0%
CCAGCAGCAGAACCTGCATG+GGG + chr2_3:34340466-34340485 Msa0288730:intron 60.0%
CCCCATGCAGGTTCTGCTGC+TGG - chr2_3:34340469-34340488 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 34334223 34341263 34334223 ID=Msa0288730;Name=Msa0288730
chr2_3 mRNA 34334223 34341263 34334223 ID=Msa0288730-mRNA-1;Parent=Msa0288730;Name=Msa0288730-mRNA-1;_AED=0.21;_eAED=0.21;_QI=203|1|1|1|0.62|0.55|9|167|343
chr2_3 exon 34334223 34334327 34334223 ID=Msa0288730-mRNA-1:exon:11202;Parent=Msa0288730-mRNA-1
chr2_3 exon 34334649 34334920 34334649 ID=Msa0288730-mRNA-1:exon:11203;Parent=Msa0288730-mRNA-1
chr2_3 exon 34336898 34336975 34336898 ID=Msa0288730-mRNA-1:exon:11204;Parent=Msa0288730-mRNA-1
chr2_3 exon 34337443 34337596 34337443 ID=Msa0288730-mRNA-1:exon:11205;Parent=Msa0288730-mRNA-1
chr2_3 exon 34337730 34337800 34337730 ID=Msa0288730-mRNA-1:exon:11206;Parent=Msa0288730-mRNA-1
chr2_3 exon 34338647 34338743 34338647 ID=Msa0288730-mRNA-1:exon:11207;Parent=Msa0288730-mRNA-1
chr2_3 exon 34340005 34340210 34340005 ID=Msa0288730-mRNA-1:exon:11208;Parent=Msa0288730-mRNA-1
chr2_3 exon 34340786 34341061 34340786 ID=Msa0288730-mRNA-1:exon:11209;Parent=Msa0288730-mRNA-1
chr2_3 exon 34341121 34341263 34341121 ID=Msa0288730-mRNA-1:exon:11210;Parent=Msa0288730-mRNA-1
chr2_3 five_prime_UTR 34334223 34334327 34334223 ID=Msa0288730-mRNA-1:five_prime_utr;Parent=Msa0288730-mRNA-1
chr2_3 five_prime_UTR 34334649 34334746 34334649 ID=Msa0288730-mRNA-1:five_prime_utr;Parent=Msa0288730-mRNA-1
chr2_3 CDS 34334747 34334920 34334747 ID=Msa0288730-mRNA-1:cds;Parent=Msa0288730-mRNA-1
chr2_3 CDS 34336898 34336975 34336898 ID=Msa0288730-mRNA-1:cds;Parent=Msa0288730-mRNA-1
chr2_3 CDS 34337443 34337596 34337443 ID=Msa0288730-mRNA-1:cds;Parent=Msa0288730-mRNA-1
chr2_3 CDS 34337730 34337800 34337730 ID=Msa0288730-mRNA-1:cds;Parent=Msa0288730-mRNA-1
chr2_3 CDS 34338647 34338743 34338647 ID=Msa0288730-mRNA-1:cds;Parent=Msa0288730-mRNA-1
chr2_3 CDS 34340005 34340210 34340005 ID=Msa0288730-mRNA-1:cds;Parent=Msa0288730-mRNA-1
chr2_3 CDS 34340786 34341037 34340786 ID=Msa0288730-mRNA-1:cds;Parent=Msa0288730-mRNA-1
chr2_3 three_prime_UTR 34341038 34341061 34341038 ID=Msa0288730-mRNA-1:three_prime_utr;Parent=Msa0288730-mRNA-1
chr2_3 three_prime_UTR 34341121 34341263 34341121 ID=Msa0288730-mRNA-1:three_prime_utr;Parent=Msa0288730-mRNA-1
Gene Sequence

>Msa0288730

ATGGTTGCTTCAACTCGCGCCATTGCAGAAAGAATCCCTTTGGTTGATCTCATAGTCCATGTCACTGATGCGAGGATTCCATTCTCCTCTCAATGTCATTTACTCACACAAACTTCAGACAATCATATTATAGCTCTCAATAAAGCTGATCTCGCTTCTCGTTCCACTTTACAGGTATGGATAGATTATTTTAGGGAAACGAACTGCATATCTTGTGGAGTCGATGCTCATAACAAGGAGAGCATCAGACAGTTCCTAAGCCTTATACAGCGGCAGGTGGGAAAATTGAGGAGAACTGATCAAGCTAATAAATATACTGCAACAGTATTGTTAATCGGGCTTCCAAATGTTGGAAAATCGGCACTTACTAATGCCTTGCATCATGTTGGGAGAATTAGTGCTGCAGAAAAAGGAAAGTTAAAGCATGCTACTGTGAGTCCAGAGCCAGGGGAGACTAAAGACATTAGAAGTTATAAGATTGCTAGCCATCCCAATATTTATGTGTTAGACACTCCAGCTGTTTTACCTCCTGAGGTTCCTGATGTTGATGTTTTATCTAAATTACTCTTAACAGGAGCAATTGGGGACTGTTTGGTTGAGAGAAAAGAAACTGCTGAATATTTTCTAGCTATTCACAACTCTAGTGATCAGTACAAAAAATGGGCAAAGTTATCGAGCAAGGAAAACGACATATTTTTCCTTAACAGCACAACAGAGTGCTTGACTACATCTGGGTTACAAATGAAACAGAAAAAGCAAATCCCTAACGATCACACACAGGACGACATGGTGCAGGATGTTAGAAGAACACTCTATGAAACGATTTCATCCTTTGATGGTAATATAAGATGCGAAGTTGAAATGGAAGCACTTATTGCTGGTCAGTTTACCGCGTTGCAGGAAGTTTTCCACGTTTCAACTGAACGTGAAGAAGATGCTCATGTCGTGGTTGCCGGGAAATTGCTTAATCTTTTTCGTACAGGTCGTCTTGGACATTATATTTTAGATAACCTTCCCAGAAATATTCACTGA

Protein sequence

>Msa0288730

MVASTRAIAERIPLVDLIVHVTDARIPFSSQCHLLTQTSDNHIIALNKADLASRSTLQVWIDYFRETNCISCGVDAHNKESIRQFLSLIQRQVGKLRRTDQANKYTATVLLIGLPNVGKSALTNALHHVGRISAAEKGKLKHATVSPEPGETKDIRSYKIASHPNIYVLDTPAVLPPEVPDVDVLSKLLLTGAIGDCLVERKETAEYFLAIHNSSDQYKKWAKLSSKENDIFFLNSTTECLTTSGLQMKQKKQIPNDHTQDDMVQDVRRTLYETISSFDGNIRCEVEMEALIAGQFTALQEVFHVSTEREEDAHVVVAGKLLNLFRTGRLGHYILDNLPRNIH*