Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0821260 | XP_003617219.1 | 96.457 | 254 | 2 | 1 | 1 | 247 | 1 | 254 | 1.19e-179 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0821260 | sp|Q7XHZ0|HFB4B_ORYSJ | 48.013 | 302 | 101 | 7 | 1 | 247 | 1 | 301 | 4.06e-78 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0821260 | G7KCV7 | 96.457 | 254 | 2 | 1 | 1 | 247 | 1 | 254 | 5.69e-180 | 503 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0821260 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0688620 | Msa0821260 | 0.813994 | 1.931253e-51 | -8.615850e-47 |
| Msa0707260 | Msa0821260 | 0.804161 | 2.467087e-49 | -8.615850e-47 |
| Msa0717900 | Msa0821260 | 0.804421 | 2.178178e-49 | -8.615850e-47 |
| Msa0720280 | Msa0821260 | 0.812957 | 3.264386e-51 | -8.615850e-47 |
| Msa0740790 | Msa0821260 | 0.805556 | 1.261245e-49 | -8.615850e-47 |
| Msa0749190 | Msa0821260 | 0.810244 | 1.269074e-50 | -8.615850e-47 |
| Msa0750520 | Msa0821260 | 0.809231 | 2.095633e-50 | -8.615850e-47 |
| Msa0780820 | Msa0821260 | 0.843501 | 1.348186e-58 | -8.615850e-47 |
| Msa0803140 | Msa0821260 | 0.809304 | 2.022146e-50 | -8.615850e-47 |
| Msa0821260 | Msa0821350 | 0.924233 | 9.254621e-90 | -8.615850e-47 |
| Msa0821260 | Msa0837680 | 0.803773 | 2.969827e-49 | -8.615850e-47 |
| Msa0821260 | Msa0841500 | 0.808563 | 2.912964e-50 | -8.615850e-47 |
| Msa0821260 | Msa1008670 | 0.806749 | 7.071896e-50 | -8.615850e-47 |
| Msa0821260 | Msa1071410 | 0.813391 | 2.620796e-51 | -8.615850e-47 |
| Msa0821260 | Msa1266690 | 0.815023 | 1.143275e-51 | -8.615850e-47 |
| Msa0821260 | Msa1294790 | 0.807523 | 4.849491e-50 | -8.615850e-47 |
| Msa0821260 | Msa1333360 | 0.811723 | 6.070718e-51 | -8.615850e-47 |
| Msa0821260 | Msa1381800 | 0.808193 | 3.492200e-50 | -8.615850e-47 |
| Msa0821260 | Msa1393560 | 0.818615 | 1.787320e-52 | -8.615850e-47 |
| Msa0821260 | Msa1426320 | 0.803398 | 3.553341e-49 | -8.615850e-47 |
| Msa0373170 | Msa0821260 | 0.823766 | 1.160402e-53 | -8.615850e-47 |
| Msa0416210 | Msa0821260 | 0.805992 | 1.021077e-49 | -8.615850e-47 |
| Msa0421750 | Msa0821260 | 0.804576 | 2.021976e-49 | -8.615850e-47 |
| Msa0433630 | Msa0821260 | 0.803268 | 3.779853e-49 | -8.615850e-47 |
| Msa0467690 | Msa0821260 | 0.821662 | 3.584498e-53 | -8.615850e-47 |
| Msa0507920 | Msa0821260 | 0.802093 | 6.607336e-49 | -8.615850e-47 |
| Msa0514020 | Msa0821260 | 0.817016 | 4.103866e-52 | -8.615850e-47 |
| Msa0521510 | Msa0821260 | 0.817862 | 2.645661e-52 | -8.615850e-47 |
| Msa0572830 | Msa0821260 | 0.821908 | 3.143411e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0821260 | MtrunA17_Chr5g0441531 | 96.457 | 254 | 2 | 1 | 1 | 247 | 1 | 254 | 0.0 | 503 |
| Msa0821260 | MtrunA17_Chr3g0134031 | 46.471 | 340 | 81 | 13 | 1 | 243 | 1 | 336 | 7.15e-85 | 257 |
| Msa0821260 | MtrunA17_Chr4g0004151 | 98.795 | 83 | 1 | 0 | 165 | 247 | 1 | 83 | 5.17e-54 | 169 |
| Msa0821260 | MtrunA17_Chr5g0397881 | 41.410 | 227 | 99 | 4 | 15 | 208 | 14 | 239 | 1.08e-49 | 166 |
| Msa0821260 | MtrunA17_Chr1g0203601 | 38.306 | 248 | 121 | 6 | 17 | 239 | 10 | 250 | 4.83e-47 | 158 |
| Msa0821260 | MtrunA17_Chr7g0257331 | 42.289 | 201 | 99 | 3 | 18 | 211 | 15 | 205 | 2.37e-46 | 154 |
| Msa0821260 | MtrunA17_Chr6g0472421 | 36.981 | 265 | 127 | 7 | 16 | 242 | 24 | 286 | 4.45e-44 | 151 |
| Msa0821260 | MtrunA17_Chr5g0402291 | 36.327 | 245 | 119 | 7 | 18 | 235 | 2 | 236 | 3.04e-40 | 140 |
| Msa0821260 | MtrunA17_Chr8g0375041 | 35.458 | 251 | 119 | 7 | 18 | 247 | 2 | 230 | 2.82e-39 | 136 |
| Msa0821260 | MtrunA17_Chr5g0410881 | 42.932 | 191 | 90 | 3 | 22 | 205 | 29 | 207 | 2.40e-37 | 137 |
| Msa0821260 | MtrunA17_Chr6g0467041 | 63.441 | 93 | 27 | 1 | 24 | 109 | 21 | 113 | 3.13e-35 | 128 |
| Msa0821260 | MtrunA17_Chr1g0204741 | 63.918 | 97 | 28 | 1 | 23 | 112 | 38 | 134 | 3.49e-33 | 122 |
| Msa0821260 | MtrunA17_Chr7g0260331 | 58.511 | 94 | 32 | 1 | 23 | 109 | 47 | 140 | 2.53e-32 | 121 |
| Msa0821260 | MtrunA17_Chr8g0379701 | 51.587 | 126 | 52 | 3 | 18 | 136 | 6 | 129 | 8.25e-32 | 120 |
| Msa0821260 | MtrunA17_Chr8g0378061 | 61.538 | 91 | 28 | 1 | 26 | 109 | 23 | 113 | 5.25e-31 | 119 |
| Msa0821260 | MtrunA17_Chr1g0185131 | 40.351 | 171 | 64 | 4 | 23 | 185 | 30 | 170 | 7.37e-31 | 117 |
| Msa0821260 | MtrunA17_Chr4g0071051 | 40.120 | 167 | 84 | 4 | 23 | 173 | 99 | 265 | 3.35e-29 | 113 |
| Msa0821260 | MtrunA17_Chr2g0330821 | 54.902 | 102 | 39 | 1 | 15 | 109 | 69 | 170 | 8.62e-29 | 111 |
| Msa0821260 | MtrunA17_Chr4g0047421 | 36.747 | 166 | 86 | 4 | 22 | 176 | 30 | 187 | 1.39e-28 | 107 |
| Msa0821260 | MtrunA17_Chr6g0485571 | 52.041 | 98 | 40 | 1 | 19 | 109 | 5 | 102 | 3.14e-27 | 107 |
| Msa0821260 | MtrunA17_Chr3g0135831 | 37.736 | 159 | 73 | 2 | 23 | 174 | 44 | 183 | 3.41e-27 | 107 |
| Msa0821260 | MtrunA17_Chr4g0039891 | 39.241 | 158 | 74 | 3 | 25 | 174 | 12 | 155 | 5.79e-27 | 108 |
| Msa0821260 | MtrunA17_Chr8g0392001 | 54.167 | 96 | 36 | 2 | 24 | 111 | 21 | 116 | 3.25e-26 | 104 |
| Msa0821260 | MtrunA17_Chr2g0284481 | 51.000 | 100 | 41 | 2 | 18 | 110 | 9 | 107 | 4.04e-26 | 104 |
| Msa0821260 | MtrunA17_Chr1g0179321 | 61.017 | 59 | 23 | 0 | 19 | 77 | 43 | 101 | 5.61e-17 | 74.3 |
| Msa0821260 | MtrunA17_Chr4g0023771 | 60.377 | 53 | 21 | 0 | 25 | 77 | 15 | 67 | 1.01e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0821260 | AT1G46264.1 | 57.727 | 220 | 54 | 6 | 20 | 204 | 29 | 244 | 4.64e-78 | 239 |
| Msa0821260 | AT5G62020.1 | 37.600 | 250 | 130 | 4 | 18 | 242 | 16 | 264 | 1.12e-45 | 155 |
| Msa0821260 | AT4G36990.1 | 37.349 | 249 | 135 | 5 | 12 | 240 | 1 | 248 | 1.65e-45 | 154 |
| Msa0821260 | AT4G11660.1 | 65.049 | 103 | 29 | 1 | 17 | 112 | 51 | 153 | 2.55e-42 | 148 |
| Msa0821260 | AT1G32330.1 | 42.935 | 184 | 86 | 4 | 22 | 197 | 34 | 206 | 4.16e-38 | 139 |
| Msa0821260 | AT1G32330.2 | 42.935 | 184 | 86 | 4 | 22 | 197 | 34 | 206 | 4.57e-38 | 139 |
| Msa0821260 | AT2G41690.1 | 39.227 | 181 | 93 | 4 | 23 | 187 | 38 | 217 | 2.57e-36 | 129 |
| Msa0821260 | AT4G17750.1 | 57.944 | 107 | 38 | 1 | 15 | 114 | 42 | 148 | 1.04e-35 | 132 |
| Msa0821260 | AT3G22830.1 | 59.184 | 98 | 33 | 1 | 20 | 110 | 56 | 153 | 3.78e-32 | 122 |
| Msa0821260 | AT5G16820.1 | 60.000 | 100 | 31 | 3 | 21 | 113 | 24 | 121 | 2.66e-31 | 120 |
| Msa0821260 | AT5G16820.2 | 60.000 | 100 | 31 | 3 | 21 | 113 | 24 | 121 | 2.66e-31 | 120 |
| Msa0821260 | AT3G02990.1 | 59.375 | 96 | 31 | 2 | 21 | 109 | 20 | 114 | 2.75e-31 | 120 |
| Msa0821260 | AT5G43840.1 | 50.877 | 114 | 49 | 1 | 23 | 129 | 17 | 130 | 3.69e-31 | 116 |
| Msa0821260 | AT5G03720.2 | 56.122 | 98 | 36 | 1 | 25 | 115 | 55 | 152 | 1.75e-30 | 117 |
| Msa0821260 | AT5G03720.1 | 56.122 | 98 | 36 | 1 | 25 | 115 | 55 | 152 | 1.75e-30 | 117 |
| Msa0821260 | AT2G26150.1 | 53.608 | 97 | 38 | 1 | 20 | 109 | 39 | 135 | 2.91e-29 | 113 |
| Msa0821260 | AT2G26150.4 | 53.608 | 97 | 38 | 1 | 20 | 109 | 39 | 135 | 2.91e-29 | 113 |
| Msa0821260 | AT3G63350.1 | 47.748 | 111 | 51 | 1 | 19 | 122 | 22 | 132 | 1.23e-28 | 110 |
| Msa0821260 | AT4G13980.1 | 58.242 | 91 | 31 | 1 | 26 | 109 | 24 | 114 | 3.78e-28 | 111 |
| Msa0821260 | AT3G51910.1 | 54.167 | 96 | 37 | 1 | 20 | 108 | 24 | 119 | 4.35e-28 | 108 |
| Msa0821260 | AT5G54070.1 | 52.632 | 95 | 38 | 1 | 21 | 108 | 67 | 161 | 5.61e-28 | 109 |
| Msa0821260 | AT1G67970.1 | 47.059 | 119 | 55 | 2 | 24 | 134 | 18 | 136 | 1.26e-27 | 108 |
| Msa0821260 | AT3G24520.1 | 52.632 | 95 | 38 | 1 | 22 | 109 | 14 | 108 | 4.40e-27 | 107 |
| Msa0821260 | AT4G18880.1 | 59.596 | 99 | 32 | 2 | 18 | 109 | 9 | 106 | 4.57e-24 | 99.8 |
| Msa0821260 | AT5G45710.3 | 38.953 | 172 | 90 | 4 | 25 | 184 | 13 | 181 | 7.20e-24 | 98.6 |
| Msa0821260 | AT5G45710.1 | 38.953 | 172 | 90 | 4 | 25 | 184 | 13 | 181 | 7.20e-24 | 98.6 |
| Msa0821260 | AT4G18870.1 | 45.882 | 85 | 39 | 2 | 25 | 102 | 146 | 230 | 1.03e-17 | 80.9 |
| Msa0821260 | AT4G18870.1 | 38.739 | 111 | 59 | 3 | 26 | 130 | 14 | 121 | 1.61e-17 | 80.1 |
Find 40 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATATCAGTGTTTGATTT+AGG | 0.203557 | 5_3:+59318497 | None:intergenic |
| AGCTCTTCTGTGAAGCTATT+TGG | 0.233498 | 5_3:-59318248 | Msa0821260:CDS |
| CTATTTGGTGTTCCTCTTTG+TGG | 0.339191 | 5_3:-59318233 | Msa0821260:CDS |
| TCCTTATCATTTGGTAATTG+AGG | 0.352875 | 5_3:+59318278 | None:intergenic |
| ATGAAACTACATTTGTTGTT+TGG | 0.362655 | 5_3:-59319253 | Msa0821260:CDS |
| CTATTACAATCCTTATCATT+TGG | 0.365932 | 5_3:+59318269 | None:intergenic |
| AGAAGATCTCTAGCAAATTC+AGG | 0.373696 | 5_3:+59319224 | None:intergenic |
| TACATACTTTAACATTATCA+TGG | 0.396465 | 5_3:+59318145 | None:intergenic |
| CTTTGTTCAAAGGGTGAAGC+AGG | 0.399996 | 5_3:+59318353 | None:intergenic |
| ATTGTTGCTTCTTTGTTCAA+AGG | 0.403141 | 5_3:+59318343 | None:intergenic |
| TCTTATTAATCAAGATTACT+AGG | 0.404553 | 5_3:+59318194 | None:intergenic |
| TTGTTGCTTCTTTGTTCAAA+GGG | 0.445911 | 5_3:+59318344 | None:intergenic |
| TCAAGAAGGTTGTTGCTGAT+AGG | 0.447682 | 5_3:-59318685 | Msa0821260:CDS |
| AAACTACATTTGTTGTTTGG+AGG | 0.447885 | 5_3:-59319250 | Msa0821260:CDS |
| TGGTATGTCTTTGTCAAGAA+AGG | 0.453363 | 5_3:+59319323 | None:intergenic |
| ATTGTTGTTGATAGTGTTGA+GGG | 0.457477 | 5_3:+59318591 | None:intergenic |
| AGATAACATGGTGTTCACTA+TGG | 0.459097 | 5_3:-59319369 | Msa0821260:CDS |
| ACCTCAATTACCAAATGATA+AGG | 0.460161 | 5_3:-59318279 | Msa0821260:CDS |
| CTTCTTGCAGGGTTTCAAGA+AGG | 0.465882 | 5_3:-59318699 | Msa0821260:intron |
| TTTGATTTAGGAGATGGTAA+TGG | 0.467405 | 5_3:+59318509 | None:intergenic |
| GATAATGTTAAAGTATGTAA+TGG | 0.486727 | 5_3:-59318141 | Msa0821260:three_prime_UTR |
| CTCAGCTATACATGAAAAGA+TGG | 0.488826 | 5_3:+59318081 | None:intergenic |
| AACAAGATGAAAGTATATGC+TGG | 0.489196 | 5_3:-59318541 | Msa0821260:CDS |
| TCAGTGTTTGATTTAGGAGA+TGG | 0.490616 | 5_3:+59318503 | None:intergenic |
| TCACTGACCACATTGTATCT+TGG | 0.491347 | 5_3:-59319283 | Msa0821260:CDS |
| GTCTTTGTCAAGAAAGGAGC+AGG | 0.498324 | 5_3:+59319329 | None:intergenic |
| CTGAGGACAATCAAAGACTA+AGG | 0.512782 | 5_3:-59318463 | Msa0821260:CDS |
| ATCTATTATGTGAAATCCAC+AGG | 0.520532 | 5_3:-59318622 | Msa0821260:CDS |
| AGAAGGTTGTTGCTGATAGG+TGG | 0.520569 | 5_3:-59318682 | Msa0821260:CDS |
| TATCTTAACAGCACTTTCTG+AGG | 0.558486 | 5_3:-59318480 | Msa0821260:CDS |
| GAAGGTTGTTGCTGATAGGT+GGG | 0.581284 | 5_3:-59318681 | Msa0821260:CDS |
| TATTGTTGTTGATAGTGTTG+AGG | 0.584009 | 5_3:+59318590 | None:intergenic |
| TGAGAGGATCATCAACAAGT+TGG | 0.584975 | 5_3:+59319303 | None:intergenic |
| GATACAATGTGGTCAGTGAG+AGG | 0.630246 | 5_3:+59319287 | None:intergenic |
| TGATGGCTTTCACATTAGAG+AGG | 0.643157 | 5_3:-59319397 | Msa0821260:CDS |
| AGAGAGGTGTGAAGATAACA+TGG | 0.644284 | 5_3:-59319381 | Msa0821260:CDS |
| TTGTTGTTGATAGTGTTGAG+GGG | 0.651120 | 5_3:+59318592 | None:intergenic |
| AGATCTCTAGCAAATTCAGG+AGG | 0.698266 | 5_3:+59319227 | None:intergenic |
| AGGGTGAAGCAGGACTCACA+TGG | 0.700311 | 5_3:+59318363 | None:intergenic |
| CATCACTCCAAGATACAATG+TGG | 0.717706 | 5_3:+59319276 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTAGAAATTATATGAAAA+TGG | + | chr5_3:59318568-59318587 | None:intergenic | 15.0% |
| !! | GTTTAGAAATTATATGAAAA+TGG | + | chr5_3:59318568-59318587 | None:intergenic | 15.0% |
| !! | TAACTATAATAATGAACTGA+AGG | + | chr5_3:59318401-59318420 | None:intergenic | 20.0% |
| !! | TTATGAAAATATGCTGAAAA+CGG | - | chr5_3:59318614-59318633 | Msa0821260:CDS | 20.0% |
| !! | TCTTATTAATCAAGATTACT+AGG | + | chr5_3:59319285-59319304 | None:intergenic | 20.0% |
| !! | TACATACTTTAACATTATCA+TGG | + | chr5_3:59319334-59319353 | None:intergenic | 20.0% |
| !! | GATAATGTTAAAGTATGTAA+TGG | - | chr5_3:59319335-59319354 | Msa0821260:CDS | 20.0% |
| !! | TAACTATAATAATGAACTGA+AGG | + | chr5_3:59318401-59318420 | None:intergenic | 20.0% |
| !! | TTATGAAAATATGCTGAAAA+CGG | - | chr5_3:59318614-59318633 | Msa0821260:CDS | 20.0% |
| !! | TCTTATTAATCAAGATTACT+AGG | + | chr5_3:59319285-59319304 | None:intergenic | 20.0% |
| !! | TACATACTTTAACATTATCA+TGG | + | chr5_3:59319334-59319353 | None:intergenic | 20.0% |
| !! | GATAATGTTAAAGTATGTAA+TGG | - | chr5_3:59319335-59319354 | Msa0821260:CDS | 20.0% |
| !!! | ATGAAACTACATTTGTTGTT+TGG | - | chr5_3:59318223-59318242 | Msa0821260:CDS | 25.0% |
| ! | TTGTTGTGCTTGAAAAAATT+GGG | + | chr5_3:59318279-59318298 | None:intergenic | 25.0% |
| ! | GTACTAAAACAATATCAAGA+AGG | + | chr5_3:59318375-59318394 | None:intergenic | 25.0% |
| !!! | ATAAGCTATTTCTGTAACAA+AGG | - | chr5_3:59318526-59318545 | Msa0821260:CDS | 25.0% |
| ! | CTGACAATAATTTGAGAAAA+TGG | - | chr5_3:59318701-59318720 | Msa0821260:intron | 25.0% |
| ! | GCAAATGATTACTTCAAAAA+AGG | - | chr5_3:59318823-59318842 | Msa0821260:intron | 25.0% |
| ! | TCATCTTGTTGAAAAATTTG+TGG | + | chr5_3:59318925-59318944 | None:intergenic | 25.0% |
| !! | AAGATATCAGTGTTTGATTT+AGG | + | chr5_3:59318982-59319001 | None:intergenic | 25.0% |
| !!! | TATTTTGAAGCTTGTTGAAT+TGG | - | chr5_3:59319164-59319183 | Msa0821260:intron | 25.0% |
| ! | CTATTACAATCCTTATCATT+TGG | + | chr5_3:59319210-59319229 | None:intergenic | 25.0% |
| !!! | TTGCTTTGATTGTTTTTTGT+TGG | - | chr5_3:59319359-59319378 | Msa0821260:CDS | 25.0% |
| !!! | ATGAAACTACATTTGTTGTT+TGG | - | chr5_3:59318223-59318242 | Msa0821260:CDS | 25.0% |
| ! | TTGTTGTGCTTGAAAAAATT+GGG | + | chr5_3:59318279-59318298 | None:intergenic | 25.0% |
| ! | GTACTAAAACAATATCAAGA+AGG | + | chr5_3:59318375-59318394 | None:intergenic | 25.0% |
| !!! | ATAAGCTATTTCTGTAACAA+AGG | - | chr5_3:59318526-59318545 | Msa0821260:CDS | 25.0% |
| ! | CTGACAATAATTTGAGAAAA+TGG | - | chr5_3:59318701-59318720 | Msa0821260:intron | 25.0% |
| ! | GCAAATGATTACTTCAAAAA+AGG | - | chr5_3:59318823-59318842 | Msa0821260:intron | 25.0% |
| ! | TCATCTTGTTGAAAAATTTG+TGG | + | chr5_3:59318925-59318944 | None:intergenic | 25.0% |
| !! | AAGATATCAGTGTTTGATTT+AGG | + | chr5_3:59318982-59319001 | None:intergenic | 25.0% |
| !!! | TATTTTGAAGCTTGTTGAAT+TGG | - | chr5_3:59319164-59319183 | Msa0821260:intron | 25.0% |
| ! | CTATTACAATCCTTATCATT+TGG | + | chr5_3:59319210-59319229 | None:intergenic | 25.0% |
| !!! | TTGCTTTGATTGTTTTTTGT+TGG | - | chr5_3:59319359-59319378 | Msa0821260:CDS | 25.0% |
| !! | AAACTACATTTGTTGTTTGG+AGG | - | chr5_3:59318226-59318245 | Msa0821260:CDS | 30.0% |
| GTTGTTGTGCTTGAAAAAAT+TGG | + | chr5_3:59318280-59318299 | None:intergenic | 30.0% | |
| GAGCTTACAGAAATAACTTA+CGG | + | chr5_3:59318652-59318671 | None:intergenic | 30.0% | |
| AATTTGAGAAAATGGAACAG+CGG | - | chr5_3:59318709-59318728 | Msa0821260:intron | 30.0% | |
| ATCTATTATGTGAAATCCAC+AGG | - | chr5_3:59318854-59318873 | Msa0821260:intron | 30.0% | |
| !! | ATTGTTGTTGATAGTGTTGA+GGG | + | chr5_3:59318888-59318907 | None:intergenic | 30.0% |
| !! | TATTGTTGTTGATAGTGTTG+AGG | + | chr5_3:59318889-59318908 | None:intergenic | 30.0% |
| ! | AACAAGATGAAAGTATATGC+TGG | - | chr5_3:59318935-59318954 | Msa0821260:intron | 30.0% |
| ! | TTTGATTTAGGAGATGGTAA+TGG | + | chr5_3:59318970-59318989 | None:intergenic | 30.0% |
| ! | TTGTTGCTTCTTTGTTCAAA+GGG | + | chr5_3:59319135-59319154 | None:intergenic | 30.0% |
| ! | ATTGTTGCTTCTTTGTTCAA+AGG | + | chr5_3:59319136-59319155 | None:intergenic | 30.0% |
| ACCTCAATTACCAAATGATA+AGG | - | chr5_3:59319197-59319216 | Msa0821260:CDS | 30.0% | |
| ! | TCCTTATCATTTGGTAATTG+AGG | + | chr5_3:59319201-59319220 | None:intergenic | 30.0% |
| !! | AAACTACATTTGTTGTTTGG+AGG | - | chr5_3:59318226-59318245 | Msa0821260:CDS | 30.0% |
| GTTGTTGTGCTTGAAAAAAT+TGG | + | chr5_3:59318280-59318299 | None:intergenic | 30.0% | |
| GAGCTTACAGAAATAACTTA+CGG | + | chr5_3:59318652-59318671 | None:intergenic | 30.0% | |
| AATTTGAGAAAATGGAACAG+CGG | - | chr5_3:59318709-59318728 | Msa0821260:intron | 30.0% | |
| ATCTATTATGTGAAATCCAC+AGG | - | chr5_3:59318854-59318873 | Msa0821260:intron | 30.0% | |
| !! | ATTGTTGTTGATAGTGTTGA+GGG | + | chr5_3:59318888-59318907 | None:intergenic | 30.0% |
| !! | TATTGTTGTTGATAGTGTTG+AGG | + | chr5_3:59318889-59318908 | None:intergenic | 30.0% |
| ! | AACAAGATGAAAGTATATGC+TGG | - | chr5_3:59318935-59318954 | Msa0821260:intron | 30.0% |
| ! | TTTGATTTAGGAGATGGTAA+TGG | + | chr5_3:59318970-59318989 | None:intergenic | 30.0% |
| ! | TTGTTGCTTCTTTGTTCAAA+GGG | + | chr5_3:59319135-59319154 | None:intergenic | 30.0% |
| ! | ATTGTTGCTTCTTTGTTCAA+AGG | + | chr5_3:59319136-59319155 | None:intergenic | 30.0% |
| ACCTCAATTACCAAATGATA+AGG | - | chr5_3:59319197-59319216 | Msa0821260:CDS | 30.0% | |
| ! | TCCTTATCATTTGGTAATTG+AGG | + | chr5_3:59319201-59319220 | None:intergenic | 30.0% |
| AGATAACATGGTGTTCACTA+TGG | - | chr5_3:59318107-59318126 | Msa0821260:three_prime_UTR | 35.0% | |
| TGGTATGTCTTTGTCAAGAA+AGG | + | chr5_3:59318156-59318175 | None:intergenic | 35.0% | |
| AGAAGATCTCTAGCAAATTC+AGG | + | chr5_3:59318255-59318274 | None:intergenic | 35.0% | |
| !! | ACAACTTCTCAAGCTTTGTT+AGG | - | chr5_3:59318295-59318314 | Msa0821260:CDS | 35.0% |
| CACATGTATCAATGTAGTGT+TGG | - | chr5_3:59318740-59318759 | Msa0821260:intron | 35.0% | |
| !! | TTGTTGTTGATAGTGTTGAG+GGG | + | chr5_3:59318887-59318906 | None:intergenic | 35.0% |
| ! | TCAGTGTTTGATTTAGGAGA+TGG | + | chr5_3:59318976-59318995 | None:intergenic | 35.0% |
| TATCTTAACAGCACTTTCTG+AGG | - | chr5_3:59318996-59319015 | Msa0821260:intron | 35.0% | |
| TTCCTCTTTGTGGAAAAAAG+AGG | - | chr5_3:59319253-59319272 | Msa0821260:CDS | 35.0% | |
| TCCTCTTTGTGGAAAAAAGA+GGG | - | chr5_3:59319254-59319273 | Msa0821260:CDS | 35.0% | |
| CTCAGCTATACATGAAAAGA+TGG | + | chr5_3:59319398-59319417 | None:intergenic | 35.0% | |
| AGATAACATGGTGTTCACTA+TGG | - | chr5_3:59318107-59318126 | Msa0821260:three_prime_UTR | 35.0% | |
| TGGTATGTCTTTGTCAAGAA+AGG | + | chr5_3:59318156-59318175 | None:intergenic | 35.0% | |
| AGAAGATCTCTAGCAAATTC+AGG | + | chr5_3:59318255-59318274 | None:intergenic | 35.0% | |
| !! | ACAACTTCTCAAGCTTTGTT+AGG | - | chr5_3:59318295-59318314 | Msa0821260:CDS | 35.0% |
| CACATGTATCAATGTAGTGT+TGG | - | chr5_3:59318740-59318759 | Msa0821260:intron | 35.0% | |
| !! | TTGTTGTTGATAGTGTTGAG+GGG | + | chr5_3:59318887-59318906 | None:intergenic | 35.0% |
| ! | TCAGTGTTTGATTTAGGAGA+TGG | + | chr5_3:59318976-59318995 | None:intergenic | 35.0% |
| TATCTTAACAGCACTTTCTG+AGG | - | chr5_3:59318996-59319015 | Msa0821260:intron | 35.0% | |
| TTCCTCTTTGTGGAAAAAAG+AGG | - | chr5_3:59319253-59319272 | Msa0821260:CDS | 35.0% | |
| TCCTCTTTGTGGAAAAAAGA+GGG | - | chr5_3:59319254-59319273 | Msa0821260:CDS | 35.0% | |
| CTCAGCTATACATGAAAAGA+TGG | + | chr5_3:59319398-59319417 | None:intergenic | 35.0% | |
| ! | AGAGAGGTGTGAAGATAACA+TGG | - | chr5_3:59318095-59318114 | Msa0821260:three_prime_UTR | 40.0% |
| TGAGAGGATCATCAACAAGT+TGG | + | chr5_3:59318176-59318195 | None:intergenic | 40.0% | |
| TCACTGACCACATTGTATCT+TGG | - | chr5_3:59318193-59318212 | Msa0821260:exon | 40.0% | |
| CATCACTCCAAGATACAATG+TGG | + | chr5_3:59318203-59318222 | None:intergenic | 40.0% | |
| AGATCTCTAGCAAATTCAGG+AGG | + | chr5_3:59318252-59318271 | None:intergenic | 40.0% | |
| !! | GCTGAAAACGGCTTTTGAAA+AGG | - | chr5_3:59318626-59318645 | Msa0821260:CDS | 40.0% |
| TCAAGAAGGTTGTTGCTGAT+AGG | - | chr5_3:59318791-59318810 | Msa0821260:intron | 40.0% | |
| CTGAGGACAATCAAAGACTA+AGG | - | chr5_3:59319013-59319032 | Msa0821260:intron | 40.0% | |
| AGCTCTTCTGTGAAGCTATT+TGG | - | chr5_3:59319228-59319247 | Msa0821260:CDS | 40.0% | |
| !! | CTATTTGGTGTTCCTCTTTG+TGG | - | chr5_3:59319243-59319262 | Msa0821260:CDS | 40.0% |
| !!! | ACCCTCTTTTTTCCACAAAG+AGG | + | chr5_3:59319258-59319277 | None:intergenic | 40.0% |
| ! | AGAGAGGTGTGAAGATAACA+TGG | - | chr5_3:59318095-59318114 | Msa0821260:three_prime_UTR | 40.0% |
| TGAGAGGATCATCAACAAGT+TGG | + | chr5_3:59318176-59318195 | None:intergenic | 40.0% | |
| TCACTGACCACATTGTATCT+TGG | - | chr5_3:59318193-59318212 | Msa0821260:exon | 40.0% | |
| CATCACTCCAAGATACAATG+TGG | + | chr5_3:59318203-59318222 | None:intergenic | 40.0% | |
| AGATCTCTAGCAAATTCAGG+AGG | + | chr5_3:59318252-59318271 | None:intergenic | 40.0% | |
| !! | GCTGAAAACGGCTTTTGAAA+AGG | - | chr5_3:59318626-59318645 | Msa0821260:CDS | 40.0% |
| TCAAGAAGGTTGTTGCTGAT+AGG | - | chr5_3:59318791-59318810 | Msa0821260:intron | 40.0% | |
| CTGAGGACAATCAAAGACTA+AGG | - | chr5_3:59319013-59319032 | Msa0821260:intron | 40.0% | |
| AGCTCTTCTGTGAAGCTATT+TGG | - | chr5_3:59319228-59319247 | Msa0821260:CDS | 40.0% | |
| !! | CTATTTGGTGTTCCTCTTTG+TGG | - | chr5_3:59319243-59319262 | Msa0821260:CDS | 40.0% |
| !!! | ACCCTCTTTTTTCCACAAAG+AGG | + | chr5_3:59319258-59319277 | None:intergenic | 40.0% |
| GTCTTTGTCAAGAAAGGAGC+AGG | + | chr5_3:59318150-59318169 | None:intergenic | 45.0% | |
| GATACAATGTGGTCAGTGAG+AGG | + | chr5_3:59318192-59318211 | None:intergenic | 45.0% | |
| CTTCTTGCAGGGTTTCAAGA+AGG | - | chr5_3:59318777-59318796 | Msa0821260:intron | 45.0% | |
| AGAAGGTTGTTGCTGATAGG+TGG | - | chr5_3:59318794-59318813 | Msa0821260:intron | 45.0% | |
| GAAGGTTGTTGCTGATAGGT+GGG | - | chr5_3:59318795-59318814 | Msa0821260:intron | 45.0% | |
| CTTTGTTCAAAGGGTGAAGC+AGG | + | chr5_3:59319126-59319145 | None:intergenic | 45.0% | |
| GTCTTTGTCAAGAAAGGAGC+AGG | + | chr5_3:59318150-59318169 | None:intergenic | 45.0% | |
| GATACAATGTGGTCAGTGAG+AGG | + | chr5_3:59318192-59318211 | None:intergenic | 45.0% | |
| CTTCTTGCAGGGTTTCAAGA+AGG | - | chr5_3:59318777-59318796 | Msa0821260:intron | 45.0% | |
| AGAAGGTTGTTGCTGATAGG+TGG | - | chr5_3:59318794-59318813 | Msa0821260:intron | 45.0% | |
| GAAGGTTGTTGCTGATAGGT+GGG | - | chr5_3:59318795-59318814 | Msa0821260:intron | 45.0% | |
| CTTTGTTCAAAGGGTGAAGC+AGG | + | chr5_3:59319126-59319145 | None:intergenic | 45.0% | |
| TCTGATGCGTGTCTTCTTGC+AGG | - | chr5_3:59318765-59318784 | Msa0821260:intron | 50.0% | |
| CTGATGCGTGTCTTCTTGCA+GGG | - | chr5_3:59318766-59318785 | Msa0821260:intron | 50.0% | |
| ! | GTTGAGGGGTTTTTCTCCTG+TGG | + | chr5_3:59318873-59318892 | None:intergenic | 50.0% |
| TCTGATGCGTGTCTTCTTGC+AGG | - | chr5_3:59318765-59318784 | Msa0821260:intron | 50.0% | |
| CTGATGCGTGTCTTCTTGCA+GGG | - | chr5_3:59318766-59318785 | Msa0821260:intron | 50.0% | |
| ! | GTTGAGGGGTTTTTCTCCTG+TGG | + | chr5_3:59318873-59318892 | None:intergenic | 50.0% |
| AGGGTGAAGCAGGACTCACA+TGG | + | chr5_3:59319116-59319135 | None:intergenic | 55.0% | |
| AGGGTGAAGCAGGACTCACA+TGG | + | chr5_3:59319116-59319135 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 59318081 | 59319417 | 59318081 | ID=Msa0821260;Name=Msa0821260 |
| chr5_3 | mRNA | 59318081 | 59319417 | 59318081 | ID=Msa0821260-mRNA-1;Parent=Msa0821260;Name=Msa0821260-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0.5|1|1|1|2|118|247 |
| chr5_3 | exon | 59318081 | 59318711 | 59318081 | ID=Msa0821260-mRNA-1:exon:18071;Parent=Msa0821260-mRNA-1 |
| chr5_3 | exon | 59319187 | 59319417 | 59319187 | ID=Msa0821260-mRNA-1:exon:18070;Parent=Msa0821260-mRNA-1 |
| chr5_3 | CDS | 59319187 | 59319417 | 59319187 | ID=Msa0821260-mRNA-1:cds;Parent=Msa0821260-mRNA-1 |
| chr5_3 | CDS | 59318199 | 59318711 | 59318199 | ID=Msa0821260-mRNA-1:cds;Parent=Msa0821260-mRNA-1 |
| chr5_3 | three_prime_UTR | 59318081 | 59318198 | 59318081 | ID=Msa0821260-mRNA-1:three_prime_utr;Parent=Msa0821260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
