AlfalfaGEDB | Msa1008670

M. sativa cultivar zhongmu-4 / Msa1008670

KEGG: K11253|K11254
GO: -
PFAM: PF00125.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1008670	XP_015747477.1	77.027	222	15	3	1	186	1	222	5.98e-109	321

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1008670	sp\|P68428\|H32_WHEAT	93.204	103	1	1	1	97	1	103	5.61e-59	183
Msa1008670	sp\|P68428\|H32_WHEAT	79.048	105	7	1	97	186	25	129	9.10e-51	162

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1008670	A7T1L3	77.027	222	15	3	1	186	1	222	3.26e-109	320

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005020	Msa1008670	0.846462	2.138938e-59	-8.615850e-47
Msa0006840	Msa1008670	0.824451	8.013493e-54	-8.615850e-47
Msa0015570	Msa1008670	0.859102	5.216833e-63	-8.615850e-47
Msa0016040	Msa1008670	0.829900	3.973272e-55	-8.615850e-47
Msa0016530	Msa1008670	0.882250	1.219519e-70	-8.615850e-47
Msa0018920	Msa1008670	0.865117	7.450080e-65	-8.615850e-47
Msa0019930	Msa1008670	0.845436	4.066293e-59	-8.615850e-47
Msa0020540	Msa1008670	0.852577	4.214629e-61	-8.615850e-47
Msa0027800	Msa1008670	0.878598	2.467040e-69	-8.615850e-47
Msa0029960	Msa1008670	0.802840	4.634059e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1008670	MtrunA17_Chr5g0410931	93.204	103	1	1	1	97	1	103	4.13e-60	183
Msa1008670	MtrunA17_Chr5g0410931	79.048	105	7	1	97	186	25	129	6.71e-52	162
Msa1008670	MtrunA17_Chr5g0410951	93.204	103	1	1	1	97	1	103	4.13e-60	183
Msa1008670	MtrunA17_Chr5g0410951	79.048	105	7	1	97	186	25	129	6.71e-52	162
Msa1008670	MtrunA17_Chr8g0383851	93.204	103	1	1	1	97	1	103	4.13e-60	183
Msa1008670	MtrunA17_Chr8g0383851	79.048	105	7	1	97	186	25	129	6.71e-52	162
Msa1008670	MtrunA17_Chr8g0383781	93.204	103	1	1	1	97	1	103	4.13e-60	183
Msa1008670	MtrunA17_Chr8g0383781	79.048	105	7	1	97	186	25	129	6.71e-52	162
Msa1008670	MtrunA17_Chr8g0390361	93.204	103	1	1	1	97	1	103	4.13e-60	183
Msa1008670	MtrunA17_Chr8g0390361	79.048	105	7	1	97	186	25	129	6.71e-52	162

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1008670	AT1G09200.1	92.233	103	2	1	1	97	1	103	1.98e-59	182
Msa1008670	AT1G09200.1	78.095	105	8	1	97	186	25	129	3.21e-51	161
Msa1008670	AT5G65360.1	92.233	103	2	1	1	97	1	103	1.98e-59	182
Msa1008670	AT5G65360.1	78.095	105	8	1	97	186	25	129	3.21e-51	161
Msa1008670	AT5G10390.1	92.233	103	2	1	1	97	1	103	1.98e-59	182
Msa1008670	AT5G10390.1	78.095	105	8	1	97	186	25	129	3.21e-51	161
Msa1008670	AT5G10400.1	92.233	103	2	1	1	97	1	103	1.98e-59	182
Msa1008670	AT5G10400.1	78.095	105	8	1	97	186	25	129	3.21e-51	161
Msa1008670	AT3G27360.1	92.233	103	2	1	1	97	1	103	1.98e-59	182
Msa1008670	AT3G27360.1	78.095	105	8	1	97	186	25	129	3.21e-51	161

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Find 38 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCACTGAACTTCTCATT+AGG	0.415532	7_1:+9220800	Msa1008670:CDS
AAATCAGCACCGGCGACGGG+AGG	0.614083	7_1:+9220712	Msa1008670:CDS
AAATCAGCTCCGGCAACCGG+AGG	0.628601	7_1:+9218506	Msa1008670:CDS
AAGAAAATCAGCACCGGCGA+CGG	0.450061	7_1:+9220708	Msa1008670:CDS
AAGCCACACAGATTCCGTCC+AGG	0.632383	7_1:+9218536	Msa1008670:CDS
AAGCCACATAGATTCAAACC+AGG	0.701493	7_1:+9220742	Msa1008670:CDS
ACAGCAAGAAAATCCACCGG+AGG	0.684797	7_1:+9218443	Msa1008670:CDS
ACCAACAAGATACGCTTCAG+CGG	0.655224	7_1:-9220917	None:intergenic
AGAAAATCAGCACCGGCGAC+GGG	0.461385	7_1:+9220709	Msa1008670:CDS
AGAAAATCAGCTCCGGCAAC+CGG	0.422242	7_1:+9218503	Msa1008670:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTCTCTGTTAGGGTTAAAA+AGG	+	chr7_1:9218952-9218971	Msa1008670:intron	30.0%
ATTGATCATCCAGAAATGTT+TGG	+	chr7_1:9219223-9219242	Msa1008670:intron	30.0%
ATATGATATGAGACTGTCTT+GGG	+	chr7_1:9219252-9219271	Msa1008670:intron	30.0%
TGAATTCAAACCCCATATAT+TGG	+	chr7_1:9219358-9219377	Msa1008670:intron	30.0%
GAATTCAAACCCCATATATT+GGG	+	chr7_1:9219359-9219378	Msa1008670:intron	30.0%
TGTTGATCTTATAACAAAGC+AGG	+	chr7_1:9219523-9219542	Msa1008670:intron	30.0%
AACTACATATCAGAATTTGG+TGG	-	chr7_1:9219661-9219680	None:intergenic	30.0%
ATAAGTCACACAATCACAAT+CGG	-	chr7_1:9219738-9219757	None:intergenic	30.0%
ACTTATTCACAAAACCCATT+TGG	-	chr7_1:9219795-9219814	None:intergenic	30.0%
GTTCTGCAATATATCAGTAA+AGG	+	chr7_1:9219907-9219926	Msa1008670:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	9218425	9221017	9218425	ID=Msa1008670;Name=Msa1008670
chr7_1	mRNA	9218425	9221017	9218425	ID=Msa1008670-mRNA-1;Parent=Msa1008670;Name=Msa1008670-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0\|0\|0\|1\|0.33\|0\|4\|0\|186
chr7_1	exon	9218425	9218637	9218425	ID=Msa1008670-mRNA-1:exon:2642;Parent=Msa1008670-mRNA-1
chr7_1	exon	9218656	9218731	9218656	ID=Msa1008670-mRNA-1:exon:2643;Parent=Msa1008670-mRNA-1
chr7_1	exon	9220704	9220843	9220704	ID=Msa1008670-mRNA-1:exon:2644;Parent=Msa1008670-mRNA-1
chr7_1	exon	9220889	9221017	9220889	ID=Msa1008670-mRNA-1:exon:2645;Parent=Msa1008670-mRNA-1
chr7_1	CDS	9218425	9218637	9218425	ID=Msa1008670-mRNA-1:cds;Parent=Msa1008670-mRNA-1
chr7_1	CDS	9218656	9218731	9218656	ID=Msa1008670-mRNA-1:cds;Parent=Msa1008670-mRNA-1
chr7_1	CDS	9220704	9220843	9220704	ID=Msa1008670-mRNA-1:cds;Parent=Msa1008670-mRNA-1
chr7_1	CDS	9220889	9221017	9220889	ID=Msa1008670-mRNA-1:cds;Parent=Msa1008670-mRNA-1

Gene Sequence

>Msa1008670

ATGGCGCGTACCAAACAAACAGCAAGAAAATCCACCGGAGGAAAAGCCCCACGGAAACAACTCGCCACCAAAGCAGCAAGAAAATCAGCTCCGGCAACCGGAGGAGTGAAGAAGCCACACAGATTCCGTCCAGGAACAGTCGCACTTCGCGAGATCCGCAAGTATCAGAAGAGCACTGAGCTTCTCATTAGGAAACTTCCATTCCAACGTCTTGATTTCAAAACTGATCTCAGATTTCAGAGTAGTGCTGTTTCTGCACTTCAAGAAGCTGCTGAAGCGTATCTTGTTGCCGCAAGAAAATCAGCACCGGCGACGGGAGGAGTGAAGAAGCCACATAGATTCAAACCAGGAACAGTCGCATTGCATGACATCAGAAAGTATCAGAAAAGCACTGAACTTCTCATTAGGAAACTTCCTTTCCAAAGATTGAGCAGTGCTGTTTCCGCTCTTCAGAAAGCCGCTGAAGCGTATCTTGTTGGTTTGTTTGAAGATACGGATCTTTGTGCTATTCATGCTAAGCGAGTTACTATTGTGCCTAAGGATATTAAACTTGCACGC

Protein sequence

>Msa1008670

MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLDFKTDLRFQSSAVSALQEAAEAYLVAARKSAPATGGVKKPHRFKPGTVALHDIRKYQKSTELLIRKLPFQRLSSAVSALQKAAEAYLVGLFEDTDLCAIHAKRVTIVPKDIKLAR