AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1008670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1008670 MtrunA17_Chr5g0410931 93.204 103 1 1 1 97 1 103 4.13e-60 183
Msa1008670 MtrunA17_Chr5g0410931 79.048 105 7 1 97 186 25 129 6.71e-52 162
Msa1008670 MtrunA17_Chr5g0410951 93.204 103 1 1 1 97 1 103 4.13e-60 183
Msa1008670 MtrunA17_Chr5g0410951 79.048 105 7 1 97 186 25 129 6.71e-52 162
Msa1008670 MtrunA17_Chr8g0383851 93.204 103 1 1 1 97 1 103 4.13e-60 183
Msa1008670 MtrunA17_Chr8g0383851 79.048 105 7 1 97 186 25 129 6.71e-52 162
Msa1008670 MtrunA17_Chr8g0383781 93.204 103 1 1 1 97 1 103 4.13e-60 183
Msa1008670 MtrunA17_Chr8g0383781 79.048 105 7 1 97 186 25 129 6.71e-52 162
Msa1008670 MtrunA17_Chr8g0390361 93.204 103 1 1 1 97 1 103 4.13e-60 183
Msa1008670 MtrunA17_Chr8g0390361 79.048 105 7 1 97 186 25 129 6.71e-52 162
Msa1008670 MtrunA17_Chr2g0295191 93.204 103 1 1 1 97 1 103 4.13e-60 183
Msa1008670 MtrunA17_Chr2g0295191 79.048 105 7 1 97 186 25 129 6.71e-52 162
Msa1008670 MtrunA17_Chr7g0237661 93.204 103 1 1 1 97 1 103 4.13e-60 183
Msa1008670 MtrunA17_Chr7g0237661 79.048 105 7 1 97 186 25 129 6.71e-52 162
Msa1008670 MtrunA17_Chr4g0033041 93.204 103 1 1 1 97 1 103 4.13e-60 183
Msa1008670 MtrunA17_Chr4g0033041 79.048 105 7 1 97 186 25 129 6.71e-52 162
Msa1008670 MtrunA17_Chr7g0218971 93.204 103 1 1 1 97 1 103 4.13e-60 183
Msa1008670 MtrunA17_Chr7g0218971 79.048 105 7 1 97 186 25 129 6.71e-52 162
Msa1008670 MtrunA17_Chr4g0046301 93.204 103 1 1 1 97 1 103 4.13e-60 183
Msa1008670 MtrunA17_Chr4g0046301 79.048 105 7 1 97 186 25 129 6.71e-52 162
Msa1008670 MtrunA17_Chr8g0364801 93.204 103 1 1 1 97 1 103 4.13e-60 183
Msa1008670 MtrunA17_Chr8g0364801 79.048 105 7 1 97 186 25 129 6.71e-52 162
Msa1008670 MtrunA17_Chr4g0054151 89.320 103 5 1 1 97 4 106 2.85e-57 176
Msa1008670 MtrunA17_Chr4g0054151 75.238 105 11 1 97 186 28 132 6.40e-49 155
Msa1008670 MtrunA17_Chr4g0054161 89.320 103 5 1 1 97 1 103 3.51e-57 176
Msa1008670 MtrunA17_Chr4g0054161 75.238 105 11 1 97 186 25 129 7.57e-49 155
Msa1008670 MtrunA17_Chr8g0363741 89.320 103 5 1 1 97 1 103 3.51e-57 176
Msa1008670 MtrunA17_Chr8g0363741 75.238 105 11 1 97 186 25 129 7.57e-49 155
Msa1008670 MtrunA17_Chr1g0156021 89.320 103 5 1 1 97 1 103 3.51e-57 176
Msa1008670 MtrunA17_Chr1g0156021 75.238 105 11 1 97 186 25 129 7.57e-49 155
Msa1008670 MtrunA17_Chr8g0388121 88.350 103 6 1 1 97 1 103 1.25e-56 174
Msa1008670 MtrunA17_Chr8g0388121 74.286 105 12 1 97 186 25 129 3.16e-48 153
Msa1008670 MtrunA17_Chr2g0319141 82.524 103 12 1 1 97 1 103 8.33e-53 165
Msa1008670 MtrunA17_Chr2g0319141 68.571 105 18 1 97 186 25 129 4.09e-45 145
Msa1008670 MtrunA17_Chr2g0319151 82.524 103 12 1 1 97 1 103 8.33e-53 165
Msa1008670 MtrunA17_Chr2g0319151 68.571 105 18 1 97 186 25 129 4.09e-45 145
Msa1008670 MtrunA17_Chr2g0319131 50.249 201 23 4 1 186 1 139 2.59e-49 156
Msa1008670 MtrunA17_Chr7g0218961 70.476 105 16 1 96 185 1 105 6.19e-44 142
Msa1008670 MtrunA17_Chr7g0218961 79.747 79 10 1 25 97 2 80 6.73e-36 121
Msa1008670 MtrunA17_Chr2g0319121 75.000 104 18 2 1 97 1 103 1.55e-43 141
Msa1008670 MtrunA17_Chr2g0319121 68.750 96 14 1 106 185 33 128 4.11e-39 130
Msa1008670 MtrunA17_Chr7g0240791 100.000 66 0 0 1 66 1 66 4.68e-40 133
Msa1008670 MtrunA17_Chr7g0240791 92.857 42 3 0 97 138 25 66 2.26e-20 83.2
Msa1008670 MtrunA17_Chr7g0222991 62.245 98 22 1 104 186 40 137 6.63e-34 117
Msa1008670 MtrunA17_Chr7g0222991 56.311 103 38 2 1 97 10 111 3.23e-26 97.8
Msa1008670 MtrunA17_Chr5g0407311 65.347 101 30 2 1 97 1 100 2.65e-33 114
Msa1008670 MtrunA17_Chr5g0407311 54.348 92 25 3 97 173 24 113 2.96e-21 84.0
Msa1008670 MtrunA17_Chr7g0223001 50.000 110 34 3 98 186 32 141 5.64e-25 95.1
Msa1008670 MtrunA17_Chr7g0223001 46.729 107 37 4 3 102 27 120 2.11e-15 70.1
Msa1008670 MtrunA17_Chr8g0347231 50.000 94 31 2 109 186 28 121 3.88e-19 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1008670 AT1G09200.1 92.233 103 2 1 1 97 1 103 1.98e-59 182
Msa1008670 AT1G09200.1 78.095 105 8 1 97 186 25 129 3.21e-51 161
Msa1008670 AT5G65360.1 92.233 103 2 1 1 97 1 103 1.98e-59 182
Msa1008670 AT5G65360.1 78.095 105 8 1 97 186 25 129 3.21e-51 161
Msa1008670 AT5G10390.1 92.233 103 2 1 1 97 1 103 1.98e-59 182
Msa1008670 AT5G10390.1 78.095 105 8 1 97 186 25 129 3.21e-51 161
Msa1008670 AT5G10400.1 92.233 103 2 1 1 97 1 103 1.98e-59 182
Msa1008670 AT5G10400.1 78.095 105 8 1 97 186 25 129 3.21e-51 161
Msa1008670 AT3G27360.1 92.233 103 2 1 1 97 1 103 1.98e-59 182
Msa1008670 AT3G27360.1 78.095 105 8 1 97 186 25 129 3.21e-51 161
Msa1008670 AT4G40030.3 89.320 103 5 1 1 97 1 103 4.85e-57 176
Msa1008670 AT4G40030.3 75.238 105 11 1 97 186 25 129 1.05e-48 155
Msa1008670 AT4G40030.1 89.320 103 5 1 1 97 1 103 4.85e-57 176
Msa1008670 AT4G40030.1 75.238 105 11 1 97 186 25 129 1.05e-48 155
Msa1008670 AT4G40030.4 89.320 103 5 1 1 97 1 103 4.85e-57 176
Msa1008670 AT4G40030.4 75.238 105 11 1 97 186 25 129 1.05e-48 155
Msa1008670 AT5G10980.1 89.320 103 5 1 1 97 1 103 4.85e-57 176
Msa1008670 AT5G10980.1 75.238 105 11 1 97 186 25 129 1.05e-48 155
Msa1008670 AT4G40040.2 89.320 103 5 1 1 97 1 103 4.85e-57 176
Msa1008670 AT4G40040.2 75.238 105 11 1 97 186 25 129 1.05e-48 155
Msa1008670 AT4G40040.3 89.320 103 5 1 1 97 1 103 4.85e-57 176
Msa1008670 AT4G40040.3 75.238 105 11 1 97 186 25 129 1.05e-48 155
Msa1008670 AT4G40040.1 89.320 103 5 1 1 97 1 103 4.85e-57 176
Msa1008670 AT4G40040.1 75.238 105 11 1 97 186 25 129 1.05e-48 155
Msa1008670 AT4G40030.2 89.320 103 5 1 1 97 29 131 1.01e-56 176
Msa1008670 AT4G40030.2 75.238 105 11 1 97 186 53 157 2.74e-48 155
Msa1008670 AT5G65350.1 87.379 103 7 1 1 97 1 103 6.74e-56 173
Msa1008670 AT5G65350.1 76.190 105 10 1 97 186 25 129 3.10e-50 159
Msa1008670 AT1G13370.1 86.408 103 8 1 1 97 1 103 5.77e-54 168
Msa1008670 AT1G13370.1 74.286 105 12 1 97 186 25 129 6.75e-48 153
Msa1008670 AT1G75600.1 85.437 103 9 1 1 97 1 103 1.25e-53 167
Msa1008670 AT1G75600.1 74.286 105 12 1 97 186 25 129 2.29e-48 154
Msa1008670 AT1G19890.1 80.769 104 13 2 1 97 1 104 2.70e-49 156
Msa1008670 AT1G19890.1 68.868 106 17 2 97 186 25 130 1.82e-41 136
Msa1008670 AT5G12910.1 59.048 105 28 1 97 186 20 124 1.72e-36 124
Msa1008670 AT5G12910.1 62.136 103 28 3 1 97 1 98 6.28e-35 120
Msa1008670 AT1G01370.2 48.980 98 33 1 106 186 72 169 6.31e-22 87.8
Msa1008670 AT1G01370.1 48.980 98 33 1 106 186 72 169 6.31e-22 87.8
Msa1008670 AT1G01370.4 48.980 98 33 1 106 186 72 169 6.31e-22 87.8
Msa1008670 AT1G01370.3 48.980 98 33 1 106 186 72 169 6.31e-22 87.8

Find 38 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGCGAAGTGCGACTGTTCC+TGG 0.260771 7_1:-9218554 None:intergenic
TTCTTCACTCCTCCGGTTGC+CGG 0.280449 7_1:-9218515 None:intergenic
TCATGCAATGCGACTGTTCC+TGG 0.348299 7_1:-9220760 None:intergenic
GAAACTTCCTTTCCAAAGAT+TGG 0.349801 7_1:+9220822 Msa1008670:CDS
TGATCTCACGAACCAATCTT+TGG 0.356391 7_1:-9220834 None:intergenic
GCCGCTGAAGCGTATCTTGT+TGG 0.386709 7_1:+9220916 Msa1008670:CDS
GCTGCTGAAGCGTATCTTGT+TGG 0.411498 7_1:+9218710 Msa1008670:CDS
AAAGCACTGAACTTCTCATT+AGG 0.415532 7_1:+9220800 Msa1008670:CDS
TGTTGGTTTGTTTGAAGATA+CGG 0.420490 7_1:+9220933 Msa1008670:CDS
AGAAAATCAGCTCCGGCAAC+CGG 0.422242 7_1:+9218503 Msa1008670:CDS
TTCTTCACTCCTCCCGTCGC+CGG 0.442903 7_1:-9220721 None:intergenic
AGAGCACTGAGCTTCTCATT+AGG 0.445355 7_1:+9218594 Msa1008670:CDS
AAGAAAATCAGCACCGGCGA+CGG 0.450061 7_1:+9220708 Msa1008670:CDS
AGAAAATCAGCACCGGCGAC+GGG 0.461385 7_1:+9220709 Msa1008670:CDS
TGGTGGCGAGTTGTTTCCGT+GGG 0.469293 7_1:-9218472 None:intergenic
GTGTGGCTTCTTCACTCCTC+CGG 0.469362 7_1:-9218522 None:intergenic
GCGAGTTACTATTGTGCCTA+AGG 0.504994 7_1:+9220978 Msa1008670:CDS
CGTGCAAGTTTAATATCCTT+AGG 0.509787 7_1:-9220994 None:intergenic
GTTCCTGGTTTGAATCTATG+TGG 0.516045 7_1:-9220745 None:intergenic
AGCAGCAAGAAAATCAGCTC+CGG 0.539637 7_1:+9218496 Msa1008670:CDS
AGCCGCAAGAAAATCAGCAC+CGG 0.578905 7_1:+9220702 Msa1008670:intron
TCACGAACCAATCTTTGGAA+AGG 0.588201 7_1:-9220829 None:intergenic
CAGTGCTCTTCTGATACTTG+CGG 0.590815 7_1:-9218580 None:intergenic
TCACGAACAAGACGTTGGAA+TGG 0.598115 7_1:-9218623 None:intergenic
CGATTTCACGAACAAGACGT+TGG 0.613448 7_1:-9218628 None:intergenic
TTGGTGGCGAGTTGTTTCCG+TGG 0.614040 7_1:-9218473 None:intergenic
AAATCAGCACCGGCGACGGG+AGG 0.614083 7_1:+9220712 Msa1008670:CDS
CAAACAGCAAGAAAATCCAC+CGG 0.620184 7_1:+9218440 Msa1008670:CDS
AAATCAGCTCCGGCAACCGG+AGG 0.628601 7_1:+9218506 Msa1008670:CDS
CCACCGGAGGAAAAGCCCCA+CGG 0.631926 7_1:+9218456 Msa1008670:CDS
AAGCCACACAGATTCCGTCC+AGG 0.632383 7_1:+9218536 Msa1008670:CDS
TTCAGCGGCTTTCTGAAGAG+CGG 0.638344 7_1:-9220902 None:intergenic
ACCAACAAGATACGCTTCAG+CGG 0.655224 7_1:-9220917 None:intergenic
GAAGTGCGACTGTTCCTGGA+CGG 0.664032 7_1:-9218550 None:intergenic
GTTCCTGGACGGAATCTGTG+TGG 0.677012 7_1:-9218539 None:intergenic
ACAGCAAGAAAATCCACCGG+AGG 0.684797 7_1:+9218443 Msa1008670:CDS
AAGCCACATAGATTCAAACC+AGG 0.701493 7_1:+9220742 Msa1008670:CDS
GGTGGCGAGTTGTTTCCGTG+GGG 0.739791 7_1:-9218471 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGATATTAAAATTGAA+TGG - chr7_1:9219106-9219125 None:intergenic 10.0%
!!! TTCAATTTTAATATCAAAAT+TGG + chr7_1:9219106-9219125 Msa1008670:intron 10.0%
!!! TCTTTAGATGTTTTATAATT+AGG + chr7_1:9218862-9218881 Msa1008670:intron 15.0%
!!! CTTTAGATGTTTTATAATTA+GGG + chr7_1:9218863-9218882 Msa1008670:intron 15.0%
!!! TTCTCTGTTATTTTTAAAAT+AGG + chr7_1:9219466-9219485 Msa1008670:intron 15.0%
!!! ATTTTGTTTATCTTGATTCA+AGG + chr7_1:9219059-9219078 Msa1008670:intron 20.0%
!!! TTATTGATTTGGTTGAAATA+GGG + chr7_1:9219147-9219166 Msa1008670:intron 20.0%
!!! ATTTTCAAACTAAATTGTAG+AGG - chr7_1:9219205-9219224 None:intergenic 20.0%
!! AAAATTGGCAGTAATATATT+TGG - chr7_1:9219967-9219986 None:intergenic 20.0%
!!! GATTTAGTTCAAATCAAAAT+TGG - chr7_1:9219982-9220001 None:intergenic 20.0%
!! TTGAACTAAATCATTTATCA+AGG + chr7_1:9219990-9220009 Msa1008670:intron 20.0%
!!! ATAATAAGCTCTAGAATATA+GGG - chr7_1:9220425-9220444 None:intergenic 20.0%
!! TTAATATATTATGACAGTCT+TGG + chr7_1:9220480-9220499 Msa1008670:intron 20.0%
!! GATGTTTTATAATTAGGGTT+TGG + chr7_1:9218868-9218887 Msa1008670:intron 25.0%
!!! TAGAGTTTAGTTTTTCTGTT+AGG + chr7_1:9218900-9218919 Msa1008670:intron 25.0%
!! TGTTGTTTAATTTCTCTGTT+AGG + chr7_1:9218942-9218961 Msa1008670:intron 25.0%
!! GTTGTTTAATTTCTCTGTTA+GGG + chr7_1:9218943-9218962 Msa1008670:intron 25.0%
! TTTAATATCAAAATTGGCCA+TGG + chr7_1:9219112-9219131 Msa1008670:intron 25.0%
!!! GTTATTGATTTGGTTGAAAT+AGG + chr7_1:9219146-9219165 Msa1008670:intron 25.0%
! TTAATTAGAGAAAGTCACAT+TGG + chr7_1:9219283-9219302 Msa1008670:intron 25.0%
! AAAAATTCAAGTCACACTAA+TGG - chr7_1:9219418-9219437 None:intergenic 25.0%
!!! CTTGAATTTTTAACTGTTTG+TGG + chr7_1:9219427-9219446 Msa1008670:intron 25.0%
! AATCGTATGTTAGTTAAATC+TGG + chr7_1:9219550-9219569 Msa1008670:intron 25.0%
! TAGTTAAATCTGGTCTAATT+AGG + chr7_1:9219560-9219579 Msa1008670:intron 25.0%
! CAAAACTACATATCAGAATT+TGG - chr7_1:9219664-9219683 None:intergenic 25.0%
!! CAAATTCTGATATGTAGTTT+TGG + chr7_1:9219662-9219681 Msa1008670:intron 25.0%
!! CAATATATCAGTAAAGGTAT+TGG + chr7_1:9219913-9219932 Msa1008670:intron 25.0%
!!! TTGGCAATTTTTATTTAGTC+TGG - chr7_1:9219948-9219967 None:intergenic 25.0%
! TCAATTTAGCAAAAAAAACC+TGG + chr7_1:9220035-9220054 Msa1008670:intron 25.0%
! AATATACACTAATTGAGCTT+TGG + chr7_1:9220085-9220104 Msa1008670:intron 25.0%
!! ATAGCTTTTGTATAGTGTAA+AGG + chr7_1:9220222-9220241 Msa1008670:intron 25.0%
!!! GATAATAAGCTCTAGAATAT+AGG - chr7_1:9220426-9220445 None:intergenic 25.0%
! ATTACCATCAACATGAATTA+TGG + chr7_1:9220454-9220473 Msa1008670:intron 25.0%
! TACCTAAATCTGTTCTTATA+AGG + chr7_1:9220515-9220534 Msa1008670:intron 25.0%
! AACCTTATAAGAACAGATTT+AGG - chr7_1:9220520-9220539 None:intergenic 25.0%
!!! AAAGTGATTGACTTGAAATA+TGG - chr7_1:9220627-9220646 None:intergenic 25.0%
! TCACTTTCAAAACTAAAACT+TGG + chr7_1:9220640-9220659 Msa1008670:intron 25.0%
TTTCTCTGTTAGGGTTAAAA+AGG + chr7_1:9218952-9218971 Msa1008670:intron 30.0%
! TATAGGCAGTGTTATTGATT+TGG + chr7_1:9219136-9219155 Msa1008670:intron 30.0%
ATTGATCATCCAGAAATGTT+TGG + chr7_1:9219223-9219242 Msa1008670:intron 30.0%
ATATGATATGAGACTGTCTT+GGG + chr7_1:9219252-9219271 Msa1008670:intron 30.0%
! ACATTGGTGGTTATTAATTC+TGG + chr7_1:9219299-9219318 Msa1008670:intron 30.0%
TGAATTCAAACCCCATATAT+TGG + chr7_1:9219358-9219377 Msa1008670:intron 30.0%
GAATTCAAACCCCATATATT+GGG + chr7_1:9219359-9219378 Msa1008670:intron 30.0%
! AAGTCTTTTCCCAATATATG+GGG - chr7_1:9219371-9219390 None:intergenic 30.0%
! CAAGTCTTTTCCCAATATAT+GGG - chr7_1:9219372-9219391 None:intergenic 30.0%
TGTTGATCTTATAACAAAGC+AGG + chr7_1:9219523-9219542 Msa1008670:intron 30.0%
AACTACATATCAGAATTTGG+TGG - chr7_1:9219661-9219680 None:intergenic 30.0%
!!! ATTCTGATATGTAGTTTTGG+TGG + chr7_1:9219665-9219684 Msa1008670:intron 30.0%
ATAAGTCACACAATCACAAT+CGG - chr7_1:9219738-9219757 None:intergenic 30.0%
ACTTATTCACAAAACCCATT+TGG - chr7_1:9219795-9219814 None:intergenic 30.0%
! ATATGGACTAATAGCATGTA+TGG - chr7_1:9219878-9219897 None:intergenic 30.0%
GTTCTGCAATATATCAGTAA+AGG + chr7_1:9219907-9219926 Msa1008670:intron 30.0%
!!! GATACTCTTCTTTTTTCAAC+AGG - chr7_1:9220183-9220202 None:intergenic 30.0%
ACATCCATAATTCATGTTGA+TGG - chr7_1:9220461-9220480 None:intergenic 30.0%
! ATAAGGTTTTGCACTCATTA+TGG + chr7_1:9220532-9220551 Msa1008670:intron 30.0%
!! TGTTGGTTTGTTTGAAGATA+CGG + chr7_1:9218727-9218746 Msa1008670:intron 30.0%
!!! GGATTTTCTTGCTGTTTGTT+TGG - chr7_1:9218438-9218457 None:intergenic 35.0%
GAGAGTTACTATTATGCCTA+AGG + chr7_1:9218772-9218791 Msa1008670:intron 35.0%
! CTTGCAAGTTGAATATCCTT+AGG - chr7_1:9218791-9218810 None:intergenic 35.0%
GGGCTTAGAAGATTTGATTA+TGG + chr7_1:9218828-9218847 Msa1008670:intron 35.0%
TCAAAATTGGCCATGGTTAT+AGG + chr7_1:9219119-9219138 Msa1008670:intron 35.0%
AATAACACTGCCTATAACCA+TGG - chr7_1:9219132-9219151 None:intergenic 35.0%
ATCATCCAGAAATGTTTGGT+GGG + chr7_1:9219227-9219246 Msa1008670:intron 35.0%
CATATGATATGAGACTGTCT+TGG + chr7_1:9219251-9219270 Msa1008670:intron 35.0%
TATGATATGAGACTGTCTTG+GGG + chr7_1:9219253-9219272 Msa1008670:intron 35.0%
ATTAGAGAAAGTCACATTGG+TGG + chr7_1:9219286-9219305 Msa1008670:intron 35.0%
! CCAAGTCTTTTCCCAATATA+TGG - chr7_1:9219373-9219392 None:intergenic 35.0%
CCATATATTGGGAAAAGACT+TGG + chr7_1:9219370-9219389 Msa1008670:intron 35.0%
CAATATTGGTGTATCAGTGT+TGG - chr7_1:9219620-9219639 None:intergenic 35.0%
CAACACTGATACACCAATAT+TGG + chr7_1:9219618-9219637 Msa1008670:intron 35.0%
TGCATTATCGACACCAATAT+TGG - chr7_1:9219634-9219653 None:intergenic 35.0%
TGTGATTGTGTGACTTATCA+AGG + chr7_1:9219740-9219759 Msa1008670:intron 35.0%
CAAGGTAGTTAAACCAAGAT+TGG + chr7_1:9219758-9219777 Msa1008670:intron 35.0%
CAATCTTGGTTTAACTACGT+TGG - chr7_1:9219833-9219852 None:intergenic 35.0%
GAGTTTGTCATAGTCAATCT+TGG - chr7_1:9219847-9219866 None:intergenic 35.0%
GATATATTGCAGAACAGCAT+TGG - chr7_1:9219902-9219921 None:intergenic 35.0%
!! TCAGTAAAGGTATTGGCATT+TGG + chr7_1:9219920-9219939 Msa1008670:intron 35.0%
!! CATTGATTCACATCGAGAAA+AGG - chr7_1:9220152-9220171 None:intergenic 35.0%
AAGGCAATTCTCAAGACATA+TGG + chr7_1:9220241-9220260 Msa1008670:intron 35.0%
TACAAAGTCAAGGACAAGTT+TGG - chr7_1:9220279-9220298 None:intergenic 35.0%
AAACTTGTCCTTGACTTTGT+AGG + chr7_1:9220278-9220297 Msa1008670:intron 35.0%
ATGGAACAGCATTAATCAAC+GGG - chr7_1:9220370-9220389 None:intergenic 35.0%
GATGGAACAGCATTAATCAA+CGG - chr7_1:9220371-9220390 None:intergenic 35.0%
GCATTCAAAACTCTGTACTA+AGG + chr7_1:9220554-9220573 Msa1008670:intron 35.0%
!! AAAGCACTGAACTTCTCATT+AGG + chr7_1:9220800-9220819 Msa1008670:CDS 35.0%
GAAACTTCCTTTCCAAAGAT+TGG + chr7_1:9220822-9220841 Msa1008670:CDS 35.0%
CGTGCAAGTTTAATATCCTT+AGG - chr7_1:9220997-9221016 None:intergenic 35.0%
CAAACAGCAAGAAAATCCAC+CGG + chr7_1:9218440-9218459 Msa1008670:CDS 40.0%
!!! TGATTTTCTTGCTGCTTTGG+TGG - chr7_1:9218492-9218511 None:intergenic 40.0%
!! AGCTGATTTTCTTGCTGCTT+TGG - chr7_1:9218495-9218514 None:intergenic 40.0%
CAACTTGCAAGAAGAATCAG+AGG + chr7_1:9218800-9218819 Msa1008670:intron 40.0%
AAGAAGAATCAGAGGCGAAA+GGG + chr7_1:9218808-9218827 Msa1008670:intron 40.0%
GATCATCCAGAAATGTTTGG+TGG + chr7_1:9219226-9219245 Msa1008670:intron 40.0%
! TCATCCAGAAATGTTTGGTG+GGG + chr7_1:9219228-9219247 Msa1008670:intron 40.0%
!! TGCAGAACAGCATTGGTATA+TGG - chr7_1:9219895-9219914 None:intergenic 40.0%
CCTATTAATCAGTGCATACC+AGG - chr7_1:9220056-9220075 None:intergenic 40.0%
!! CCTGGTATGCACTGATTAAT+AGG + chr7_1:9220053-9220072 Msa1008670:intron 40.0%
GATTCACATCGAGAAAAGGA+GGG - chr7_1:9220148-9220167 None:intergenic 40.0%
TGATTCACATCGAGAAAAGG+AGG - chr7_1:9220149-9220168 None:intergenic 40.0%
GACAACATCCTACAAAGTCA+AGG - chr7_1:9220289-9220308 None:intergenic 40.0%
AATCAACGGGTGTTAACAGA+AGG - chr7_1:9220357-9220376 None:intergenic 40.0%
ATTGAGTCAATTGACAGTGG+CGG - chr7_1:9220397-9220416 None:intergenic 40.0%
CGAATTGAGTCAATTGACAG+TGG - chr7_1:9220400-9220419 None:intergenic 40.0%
TCAAAACTCTGTACTAAGGC+TGG + chr7_1:9220558-9220577 Msa1008670:intron 40.0%
TCTGTACTAAGGCTGGTATA+CGG + chr7_1:9220565-9220584 Msa1008670:intron 40.0%
! GATTTTCTTGCGGCTTTTGA+GGG - chr7_1:9220697-9220716 None:intergenic 40.0%
! TGATTTTCTTGCGGCTTTTG+AGG - chr7_1:9220698-9220717 None:intergenic 40.0%
AAGCCACATAGATTCAAACC+AGG + chr7_1:9220742-9220761 Msa1008670:CDS 40.0%
! GTTCCTGGTTTGAATCTATG+TGG - chr7_1:9220748-9220767 None:intergenic 40.0%
! TCACGAACCAATCTTTGGAA+AGG - chr7_1:9220832-9220851 None:intergenic 40.0%
TGATCTCACGAACCAATCTT+TGG - chr7_1:9220837-9220856 None:intergenic 40.0%
AGCAGCAAGAAAATCAGCTC+CGG + chr7_1:9218496-9218515 Msa1008670:CDS 45.0%
CAGTGCTCTTCTGATACTTG+CGG - chr7_1:9218583-9218602 None:intergenic 45.0%
!! AGAGCACTGAGCTTCTCATT+AGG + chr7_1:9218594-9218613 Msa1008670:CDS 45.0%
TCACGAACAAGACGTTGGAA+TGG - chr7_1:9218626-9218645 None:intergenic 45.0%
CGATTTCACGAACAAGACGT+TGG - chr7_1:9218631-9218650 None:intergenic 45.0%
TCTTGTTCGTGAAATCGCTC+AGG + chr7_1:9218634-9218653 Msa1008670:intron 45.0%
CAAGAAGAATCAGAGGCGAA+AGG + chr7_1:9218807-9218826 Msa1008670:intron 45.0%
TATGCCCCACCAAACATTTC+TGG - chr7_1:9219235-9219254 None:intergenic 45.0%
ATATGAGACTGTCTTGGGGT+TGG + chr7_1:9219257-9219276 Msa1008670:intron 45.0%
ACTGTTTGTGGCTTCTTGCT+TGG + chr7_1:9219439-9219458 Msa1008670:intron 45.0%
CTGTTTGTGGCTTCTTGCTT+GGG + chr7_1:9219440-9219459 Msa1008670:intron 45.0%
TTGGCATCAGCTTGACCAAA+TGG + chr7_1:9219777-9219796 Msa1008670:intron 45.0%
TGGCATCAGCTTGACCAAAT+GGG + chr7_1:9219778-9219797 Msa1008670:intron 45.0%
TTGTGATAAGCCTCTCCCAA+GGG + chr7_1:9220113-9220132 Msa1008670:intron 45.0%
ACGGGTGTTAACAGAAGGAT+GGG - chr7_1:9220352-9220371 None:intergenic 45.0%
AACGGGTGTTAACAGAAGGA+TGG - chr7_1:9220353-9220372 None:intergenic 45.0%
CTGTACTAAGGCTGGTATAC+GGG + chr7_1:9220566-9220585 Msa1008670:intron 45.0%
!! ATTGGTTCGTGAGATCACTC+AGG + chr7_1:9220840-9220859 Msa1008670:intron 45.0%
ACCAACAAGATACGCTTCAG+CGG - chr7_1:9218714-9218733 None:intergenic 45.0%
GCGAGTTACTATTGTGCCTA+AGG + chr7_1:9220978-9220997 Msa1008670:CDS 45.0%
ACAGCAAGAAAATCCACCGG+AGG + chr7_1:9218443-9218462 Msa1008670:CDS 50.0%
AGAAAATCAGCTCCGGCAAC+CGG + chr7_1:9218503-9218522 Msa1008670:CDS 50.0%
GCTGCTGAAGCGTATCTTGT+TGG + chr7_1:9218710-9218729 Msa1008670:CDS 50.0%
GGTCAAGCTGATGCCAATCT+TGG - chr7_1:9219774-9219793 None:intergenic 50.0%
CTTGTGATAAGCCTCTCCCA+AGG + chr7_1:9220112-9220131 Msa1008670:intron 50.0%
ATCGAGAAAAGGAGGGACTC+AGG - chr7_1:9220141-9220160 None:intergenic 50.0%
! AATTGACAGTGGCGGAAGGA+TGG - chr7_1:9220389-9220408 None:intergenic 50.0%
! AGTCAATTGACAGTGGCGGA+AGG - chr7_1:9220393-9220412 None:intergenic 50.0%
TACTAAGGCTGGTATACGGG+TGG + chr7_1:9220569-9220588 Msa1008670:intron 50.0%
!!! GGCTTTTGAGGGCATTGGTA+TGG - chr7_1:9220686-9220705 None:intergenic 50.0%
AGCCGCAAGAAAATCAGCAC+CGG + chr7_1:9220702-9220721 Msa1008670:intron 50.0%
!! AAGAAAATCAGCACCGGCGA+CGG + chr7_1:9220708-9220727 Msa1008670:CDS 50.0%
TCATGCAATGCGACTGTTCC+TGG - chr7_1:9220763-9220782 None:intergenic 50.0%
! TTCAGCGGCTTTCTGAAGAG+CGG - chr7_1:9220905-9220924 None:intergenic 50.0%
! TTTCCGTGGGGCTTTTCCTC+CGG - chr7_1:9218462-9218481 None:intergenic 55.0%
! TGGTGGCGAGTTGTTTCCGT+GGG - chr7_1:9218475-9218494 None:intergenic 55.0%
!! TTGGTGGCGAGTTGTTTCCG+TGG - chr7_1:9218476-9218495 None:intergenic 55.0%
TTCTTCACTCCTCCGGTTGC+CGG - chr7_1:9218518-9218537 None:intergenic 55.0%
GTGTGGCTTCTTCACTCCTC+CGG - chr7_1:9218525-9218544 None:intergenic 55.0%
AAGCCACACAGATTCCGTCC+AGG + chr7_1:9218536-9218555 Msa1008670:CDS 55.0%
GTTCCTGGACGGAATCTGTG+TGG - chr7_1:9218542-9218561 None:intergenic 55.0%
GAAGTGCGACTGTTCCTGGA+CGG - chr7_1:9218553-9218572 None:intergenic 55.0%
TAAGGCTGGTATACGGGTGG+TGG + chr7_1:9220572-9220591 Msa1008670:intron 55.0%
!! CTTGCGGCTTTTGAGGGCAT+TGG - chr7_1:9220691-9220710 None:intergenic 55.0%
!!! CGCCGGTGCTGATTTTCTTG+CGG - chr7_1:9220707-9220726 None:intergenic 55.0%
!! AGAAAATCAGCACCGGCGAC+GGG + chr7_1:9220709-9220728 Msa1008670:CDS 55.0%
GCCGCTGAAGCGTATCTTGT+TGG + chr7_1:9220916-9220935 Msa1008670:CDS 55.0%
! GGTGGCGAGTTGTTTCCGTG+GGG - chr7_1:9218474-9218493 None:intergenic 60.0%
AAATCAGCTCCGGCAACCGG+AGG + chr7_1:9218506-9218525 Msa1008670:CDS 60.0%
TCGCGAAGTGCGACTGTTCC+TGG - chr7_1:9218557-9218576 None:intergenic 60.0%
GACTCAGGTACCCTTGGGAG+AGG - chr7_1:9220126-9220145 None:intergenic 60.0%
GGAGGGACTCAGGTACCCTT+GGG - chr7_1:9220131-9220150 None:intergenic 60.0%
AGGAGGGACTCAGGTACCCT+TGG - chr7_1:9220132-9220151 None:intergenic 60.0%
TTCTTCACTCCTCCCGTCGC+CGG - chr7_1:9220724-9220743 None:intergenic 60.0%
CCACCGGAGGAAAAGCCCCA+CGG + chr7_1:9218456-9218475 Msa1008670:CDS 65.0%
!! AAATCAGCACCGGCGACGGG+AGG + chr7_1:9220712-9220731 Msa1008670:CDS 65.0%
! CCGTGGGGCTTTTCCTCCGG+TGG - chr7_1:9218459-9218478 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 9218425 9221017 9218425 ID=Msa1008670;Name=Msa1008670
chr7_1 mRNA 9218425 9221017 9218425 ID=Msa1008670-mRNA-1;Parent=Msa1008670;Name=Msa1008670-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0|1|0.33|0|4|0|186
chr7_1 exon 9218425 9218637 9218425 ID=Msa1008670-mRNA-1:exon:2642;Parent=Msa1008670-mRNA-1
chr7_1 exon 9218656 9218731 9218656 ID=Msa1008670-mRNA-1:exon:2643;Parent=Msa1008670-mRNA-1
chr7_1 exon 9220704 9220843 9220704 ID=Msa1008670-mRNA-1:exon:2644;Parent=Msa1008670-mRNA-1
chr7_1 exon 9220889 9221017 9220889 ID=Msa1008670-mRNA-1:exon:2645;Parent=Msa1008670-mRNA-1
chr7_1 CDS 9218425 9218637 9218425 ID=Msa1008670-mRNA-1:cds;Parent=Msa1008670-mRNA-1
chr7_1 CDS 9218656 9218731 9218656 ID=Msa1008670-mRNA-1:cds;Parent=Msa1008670-mRNA-1
chr7_1 CDS 9220704 9220843 9220704 ID=Msa1008670-mRNA-1:cds;Parent=Msa1008670-mRNA-1
chr7_1 CDS 9220889 9221017 9220889 ID=Msa1008670-mRNA-1:cds;Parent=Msa1008670-mRNA-1
Gene Sequence

>Msa1008670

ATGGCGCGTACCAAACAAACAGCAAGAAAATCCACCGGAGGAAAAGCCCCACGGAAACAACTCGCCACCAAAGCAGCAAGAAAATCAGCTCCGGCAACCGGAGGAGTGAAGAAGCCACACAGATTCCGTCCAGGAACAGTCGCACTTCGCGAGATCCGCAAGTATCAGAAGAGCACTGAGCTTCTCATTAGGAAACTTCCATTCCAACGTCTTGATTTCAAAACTGATCTCAGATTTCAGAGTAGTGCTGTTTCTGCACTTCAAGAAGCTGCTGAAGCGTATCTTGTTGCCGCAAGAAAATCAGCACCGGCGACGGGAGGAGTGAAGAAGCCACATAGATTCAAACCAGGAACAGTCGCATTGCATGACATCAGAAAGTATCAGAAAAGCACTGAACTTCTCATTAGGAAACTTCCTTTCCAAAGATTGAGCAGTGCTGTTTCCGCTCTTCAGAAAGCCGCTGAAGCGTATCTTGTTGGTTTGTTTGAAGATACGGATCTTTGTGCTATTCATGCTAAGCGAGTTACTATTGTGCCTAAGGATATTAAACTTGCACGC

Protein sequence

>Msa1008670

MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLDFKTDLRFQSSAVSALQEAAEAYLVAARKSAPATGGVKKPHRFKPGTVALHDIRKYQKSTELLIRKLPFQRLSSAVSALQKAAEAYLVGLFEDTDLCAIHAKRVTIVPKDIKLAR