AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0364550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0364550 MtrunA17_Chr3g0107931 47.033 691 202 15 1 565 1235 1887 3.34e-165 514
Msa0364550 MtrunA17_Chr3g0091861 42.077 751 197 16 1 556 1157 1864 8.74e-146 461
Msa0364550 MtrunA17_Chr3g0108151 47.798 613 223 14 1 565 980 1543 1.81e-144 454
Msa0364550 MtrunA17_Chr3g0105521 45.765 614 220 17 29 565 1028 1605 1.68e-130 417
Msa0364550 MtrunA17_Chr3g0108071 43.192 639 225 19 1 535 357 961 9.25e-130 403
Msa0364550 MtrunA17_Chr3g0108171 63.483 356 100 3 212 565 1640 1967 9.79e-126 406
Msa0364550 MtrunA17_Chr3g0108171 37.118 458 154 14 61 409 1194 1626 3.06e-57 207
Msa0364550 MtrunA17_Chr3g0108171 52.071 169 73 2 1 168 1077 1238 1.88e-46 176
Msa0364550 MtrunA17_Chr3g0097011 64.038 317 95 4 249 565 100 397 2.28e-124 371
Msa0364550 MtrunA17_Chr3g0105591 54.479 413 122 7 193 565 49 435 2.83e-124 372
Msa0364550 MtrunA17_Chr3g0107261 61.963 326 115 2 249 565 74 399 2.33e-123 369
Msa0364550 MtrunA17_Chr3g0108821 39.673 673 222 17 1 565 1206 1802 9.36e-114 372
Msa0364550 MtrunA17_Chr3g0105551 52.323 409 118 8 205 565 1485 1864 4.73e-104 344
Msa0364550 MtrunA17_Chr3g0105551 59.286 140 54 1 29 168 1146 1282 1.88e-44 169
Msa0364550 MtrunA17_Chr2g0304131 61.940 268 90 2 310 565 48 315 1.82e-102 311
Msa0364550 MtrunA17_Chr3g0108091 43.822 518 168 17 119 535 3 498 9.43e-101 314
Msa0364550 MtrunA17_Chr3g0105471 61.481 270 73 4 301 565 3 246 4.03e-98 298
Msa0364550 MtrunA17_Chr3g0087641 52.941 323 91 3 215 508 56 346 6.96e-97 298
Msa0364550 MtrunA17_Chr3g0108811 40.727 550 196 12 62 565 1465 1930 8.68e-89 300
Msa0364550 MtrunA17_Chr3g0108811 52.128 188 73 4 1 183 1227 1402 1.99e-49 184
Msa0364550 MtrunA17_Chr3g0108811 48.571 140 57 3 42 166 1367 1506 2.50e-26 114
Msa0364550 MtrunA17_Chr3g0091851 57.544 285 103 3 281 565 1049 1315 1.23e-88 298
Msa0364550 MtrunA17_Chr3g0108761 72.396 192 39 1 374 565 3 180 4.26e-87 267
Msa0364550 MtrunA17_Chr3g0107641 72.105 190 52 1 376 565 4 192 1.45e-86 266
Msa0364550 MtrunA17_Chr3g0096771 53.441 247 80 4 331 565 66 289 3.95e-70 227
Msa0364550 MtrunA17_Chr3g0107171 67.683 164 46 2 404 565 225 383 1.96e-64 215
Msa0364550 MtrunA17_Chr3g0105481 41.414 396 139 10 23 352 1054 1422 4.22e-64 228
Msa0364550 MtrunA17_Chr3g0107271 59.880 167 62 3 1 166 13 175 6.25e-61 202
Msa0364550 MtrunA17_Chr7g0223911 62.651 166 53 2 402 565 2 160 2.63e-59 194
Msa0364550 MtrunA17_Chr3g0108111 58.683 167 68 1 1 166 158 324 1.27e-55 197
Msa0364550 MtrunA17_Chr3g0097601 55.689 167 73 1 1 166 14 180 8.41e-53 181
Msa0364550 MtrunA17_Chr7g0229711 60.248 161 41 3 393 553 2 139 2.70e-50 169
Msa0364550 MtrunA17_Chr3g0096701 37.097 372 170 10 59 375 39 401 2.25e-47 176
Msa0364550 MtrunA17_Chr3g0108011 46.544 217 80 6 1 211 1244 1430 4.56e-45 171
Msa0364550 MtrunA17_Chr3g0105501 43.519 216 105 6 31 234 1 211 3.07e-43 153
Msa0364550 MtrunA17_Chr3g0105601 57.857 140 56 1 29 168 266 402 7.96e-41 154
Msa0364550 MtrunA17_Chr3g0112521 74.648 71 18 0 480 550 6 76 1.46e-29 111
Msa0364550 MtrunA17_Chr3g0107081 52.212 113 44 1 54 166 29 131 4.74e-29 114
Msa0364550 MtrunA17_Chr3g0109131 72.368 76 21 0 490 565 97 172 4.72e-28 110
Msa0364550 MtrunA17_Chr1g0160951 36.310 168 105 1 1 166 1005 1172 6.72e-27 116
Msa0364550 MtrunA17_Chr2g0288311 58.333 96 34 2 72 166 31 121 1.13e-25 103
Msa0364550 MtrunA17_Chr3g0100241 37.324 142 81 4 32 168 11 149 7.11e-19 85.5
Msa0364550 MtrunA17_Chr5g0439121 37.410 139 85 1 29 167 1320 1456 2.44e-18 89.4
Msa0364550 MtrunA17_Chr3g0105491 56.250 80 21 2 493 565 1 73 3.27e-17 76.3
Msa0364550 MtrunA17_Chr3g0107201 29.114 316 117 9 136 375 2 286 2.06e-16 82.8
Msa0364550 MtrunA17_Chr5g0443761 30.061 163 111 2 5 166 865 1025 1.45e-15 80.5
Msa0364550 MtrunA17_Chr3g0106021 52.941 68 32 0 1 68 314 381 5.13e-15 77.0
Msa0364550 MtrunA17_Chr3g0096791 42.857 133 60 5 249 375 40 162 1.65e-12 68.6
Msa0364550 MtrunA17_Chr3g0100261 33.099 142 87 3 32 168 1027 1165 1.90e-12 70.5
Msa0364550 MtrunA17_Chr3g0099591 30.657 137 89 3 35 168 1025 1158 3.70e-12 69.7
Msa0364550 MtrunA17_Chr8g0360991 30.709 127 83 2 42 168 1036 1157 9.84e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 91 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAATTTGGAAAATCTATT+TGG 0.166062 3_1:+57743901 Msa0364550:CDS
TACTACCCTCAACCCTTCTT+TGG 0.244836 3_1:+57744374 Msa0364550:CDS
TCCATATCTTCGTTATGTTT+TGG 0.253003 3_1:-57743252 None:intergenic
TATTGAAAGGTGTGCCAATT+TGG 0.254384 3_1:+57743888 Msa0364550:CDS
GATGATGAAATATTAGTTTC+TGG 0.257696 3_1:+57745383 Msa0364550:CDS
ACCATCAAAGATGTTGTTCT+TGG 0.259574 3_1:+57745171 Msa0364550:CDS
GACATCCTCTAAAGTTGTTT+TGG 0.267757 3_1:+57746020 Msa0364550:CDS
AGTACCAGTATTGTGGCTTT+TGG 0.288039 3_1:-57743941 None:intergenic
CTAACACATCCAACACACTA+TGG 0.343716 3_1:-57745765 None:intergenic
ACGACAAGTGCTTCAAGCTT+TGG 0.351171 3_1:-57743442 None:intergenic
CTGAATTTCTTCAACTTCCT+TGG 0.352755 3_1:-57745947 None:intergenic
ACTCTCCAAAACAACTTTAG+AGG 0.354066 3_1:-57746025 None:intergenic
TCCAAAACATAACGAAGATA+TGG 0.364379 3_1:+57743251 Msa0364550:CDS
CGACAAGTGCTTCAAGCTTT+GGG 0.365055 3_1:-57743441 None:intergenic
TCTTGAGAGAACTGCAAATC+AGG 0.373429 3_1:-57745886 None:intergenic
CATGGAACATTGGCTCGCTT+TGG 0.373468 3_1:+57743075 None:intergenic
TAAATGAGTTGATGATGTTC+TGG 0.384496 3_1:-57744775 None:intergenic
ATTACATTATTTCCCAAAGA+AGG 0.384791 3_1:-57744387 None:intergenic
ACCTTGGTCATTATTAGTCT+TGG 0.387328 3_1:-57745211 None:intergenic
TAGCTCAGCTAGACAGTTGT+AGG 0.394123 3_1:-57745725 None:intergenic
ACTACCCTCAACCCTTCTTT+GGG 0.394886 3_1:+57744375 Msa0364550:CDS
TTCCTTGGTAACTCGTTGCT+TGG 0.396164 3_1:-57745932 None:intergenic
ATTGAAGAGCAGGTGAACTT+AGG 0.405945 3_1:+57743154 Msa0364550:CDS
ACTAATATTTCATCATCCTT+AGG 0.411379 3_1:-57745377 None:intergenic
ATTGAAGTTGACGCGGCATC+AGG 0.428897 3_1:+57743982 Msa0364550:CDS
TCCAAGAACAACATCTTTGA+TGG 0.430115 3_1:-57745172 None:intergenic
CCATTTGTAATGAGCTTCCT+AGG 0.430441 3_1:+57743503 Msa0364550:CDS
TTGAAGAGCAGGTGAACTTA+GGG 0.434330 3_1:+57743155 Msa0364550:CDS
TAATGAGCTTCCTAGGCTAA+AGG 0.442635 3_1:+57743510 Msa0364550:CDS
CATCCAACACACTATGGGTT+TGG 0.445633 3_1:-57745759 None:intergenic
TGTTGTTCTTGGAGACTCTC+AGG 0.448134 3_1:+57745182 Msa0364550:CDS
GAATCCAAAAGCCACAATAC+TGG 0.452643 3_1:+57743937 Msa0364550:CDS
CCTAGGAAGCTCATTACAAA+TGG 0.457828 3_1:-57743503 None:intergenic
ATACCTTTAGATGGTATTGA+AGG 0.458241 3_1:-57745437 None:intergenic
TTTCAAATTCCTTGTCCTCA+AGG 0.461592 3_1:+57743410 Msa0364550:CDS
CATAGTGTGTTGGATGTGTT+AGG 0.467513 3_1:+57745766 Msa0364550:CDS
AGTTGATGATGTTCTGGTCT+TGG 0.469473 3_1:-57744769 None:intergenic
CAATATAAAATACCTTTAGA+TGG 0.469682 3_1:-57745446 None:intergenic
TTTGATAAGGATTGGTTGGA+TGG 0.470107 3_1:+57745841 Msa0364550:CDS
TTTCCTTCAATACCATCTAA+AGG 0.485018 3_1:+57745434 Msa0364550:CDS
TATTTCCCAAAGAAGGGTTG+AGG 0.487302 3_1:-57744380 None:intergenic
TTACATTATTTCCCAAAGAA+GGG 0.493954 3_1:-57744386 None:intergenic
AGAGTTAATAAGTTCTTCAT+CGG 0.497388 3_1:+57744797 Msa0364550:CDS
AAAATTTAGTACCAGTATTG+TGG 0.502009 3_1:-57743948 None:intergenic
GCTCGCTTTGGAAAGAATCA+TGG 0.506077 3_1:+57743087 Msa0364550:CDS
ACACAAGTTGATTTCCTCCC+AGG 0.509075 3_1:+57744005 Msa0364550:CDS
ATTTCCCAAAGAAGGGTTGA+GGG 0.513085 3_1:-57744379 None:intergenic
GAAAGTAGGCTCAAATATTG+AGG 0.522263 3_1:+57745346 Msa0364550:CDS
TGAGCATAAAACAACTTCAC+AGG 0.524686 3_1:+57744836 Msa0364550:CDS
TAAAGTGTCCTTTAAAAGAA+CGG 0.529189 3_1:-57745677 None:intergenic
CCAACACACTATGGGTTTGG+AGG 0.537807 3_1:-57745756 None:intergenic
AGCTCATTACAAATGGAGAC+AGG 0.540685 3_1:-57743496 None:intergenic
TAATTTAATTATAGCCAAGA+GGG 0.540789 3_1:-57746098 None:intergenic
ATGATCAAAGCCTTTAGCCT+AGG 0.541792 3_1:-57743520 None:intergenic
TAACGACATAATTGAAGAGC+AGG 0.543277 3_1:+57743144 Msa0364550:CDS
GCAGCTTTAAGTGCCCCTCT+TGG 0.545989 3_1:+57746084 Msa0364550:CDS
TATTGAGGAACAATTTCCTA+AGG 0.547849 3_1:+57745361 Msa0364550:CDS
ATCGAGATAAGTGTTGAAGA+AGG 0.549049 3_1:+57744729 Msa0364550:CDS
TTCTTCTTTACTTGTCACAA+GGG 0.549364 3_1:+57745573 Msa0364550:CDS
ATAATTAGATCAAGCAATTG+TGG 0.552708 3_1:-57743331 None:intergenic
TAACACATCCAACACACTAT+GGG 0.560461 3_1:-57745764 None:intergenic
TTTCTTCAAGCGGACACTGT+TGG 0.565458 3_1:-57744347 None:intergenic
ATGTGTAGAAATATGGTGAT+GGG 0.568100 3_1:+57745109 Msa0364550:intron
GAAGCATGTCCTTGAGGACA+AGG 0.568791 3_1:-57743419 None:intergenic
TTTGATGAATAAACAATCGA+TGG 0.571395 3_1:+57744305 Msa0364550:CDS
GGAGAGTATCATTCAACAAG+AGG 0.573832 3_1:+57746041 Msa0364550:CDS
GAACAACATCTTTGATGGTG+AGG 0.581399 3_1:-57745167 None:intergenic
GTGTCCTTTAAAAGAACGGT+AGG 0.582573 3_1:-57745673 None:intergenic
TATGTGTAGAAATATGGTGA+TGG 0.582817 3_1:+57745108 Msa0364550:intron
TTATGCTCAGAAATAACTAA+CGG 0.585164 3_1:-57744822 None:intergenic
TTACTAAGTAATAGATACAA+AGG 0.593895 3_1:+57745697 Msa0364550:CDS
CTTTGGGAAGCATGTCCTTG+AGG 0.603631 3_1:-57743425 None:intergenic
GAACGGTAGGATGCTTAACA+AGG 0.604566 3_1:-57745660 None:intergenic
CTAACTCGACAAATTCAGAC+TGG 0.606041 3_1:-57745795 None:intergenic
GATGACGCTTTCATGAAAGT+AGG 0.608695 3_1:+57745332 Msa0364550:CDS
GTTCTTCTTTACTTGTCACA+AGG 0.609081 3_1:+57745572 Msa0364550:CDS
TTAGATCAAGCAATTGTGGT+AGG 0.610690 3_1:-57743327 None:intergenic
GTAGTATCAGTTTCTTCAAG+CGG 0.611305 3_1:-57744357 None:intergenic
ATTGGTTGGATGGTGTTGAA+AGG 0.611641 3_1:+57745851 Msa0364550:CDS
CCTCCAAACCCATAGTGTGT+TGG 0.615763 3_1:+57745756 Msa0364550:CDS
TGATCATAAGAGAAGCAGAT+GGG 0.621099 3_1:+57743536 Msa0364550:CDS
GATGGTGAGGAGCTCTGTAG+TGG 0.625405 3_1:-57745154 None:intergenic
CTAATTTAATTATAGCCAAG+AGG 0.633662 3_1:-57746099 None:intergenic
AGCTGGGATTGAAGTTGACG+CGG 0.638258 3_1:+57743975 Msa0364550:CDS
TGTGTGGGAACATGGAACAT+TGG 0.641819 3_1:+57743065 None:intergenic
TTCCAAGCAACGAGTTACCA+AGG 0.652242 3_1:+57745930 Msa0364550:CDS
AATTTAATTATAGCCAAGAG+GGG 0.661722 3_1:-57746097 None:intergenic
ACCAAGACTAATAATGACCA+AGG 0.661732 3_1:+57745210 Msa0364550:CDS
TTGATCATAAGAGAAGCAGA+TGG 0.663678 3_1:+57743535 Msa0364550:CDS
TGTGTAGAAATATGGTGATG+GGG 0.680375 3_1:+57745110 Msa0364550:intron
TAGACTAGCATTGACCTGGG+AGG 0.726576 3_1:-57744019 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATACAATGAAAATGAA+GGG - chr3_1:57744649-57744668 None:intergenic 15.0%
!! AAAAAATACAATGAAAATGA+AGG - chr3_1:57744650-57744669 None:intergenic 15.0%
!! AATTAAAAGGATATTTAAGT+TGG - chr3_1:57744698-57744717 None:intergenic 15.0%
!! TCTAAATTGTTAATATATGT+AGG - chr3_1:57745061-57745080 None:intergenic 15.0%
!!! TTTTAATATGTGTAGAAATA+TGG + chr3_1:57745102-57745121 Msa0364550:intron 15.0%
!! ATTGCTACAAATTTCAAAAT+TGG - chr3_1:57743607-57743626 None:intergenic 20.0%
!!! TGATATTTTAAAGTCTGAAA+TGG - chr3_1:57743667-57743686 None:intergenic 20.0%
!!! GTGATAAAATTTTAATCACT+AGG + chr3_1:57743710-57743729 Msa0364550:intron 20.0%
!!! ATATCCTTTTAATTTAAAGC+AGG + chr3_1:57744704-57744723 Msa0364550:intron 20.0%
!!! TATCCTTTTAATTTAAAGCA+GGG + chr3_1:57744705-57744724 Msa0364550:intron 20.0%
!! CAATATAAAATACCTTTAGA+TGG - chr3_1:57745449-57745468 None:intergenic 20.0%
!! TTACTAAGTAATAGATACAA+AGG + chr3_1:57745697-57745716 Msa0364550:CDS 20.0%
!!! AATTTTCTTTTGATAAGGAT+TGG + chr3_1:57745833-57745852 Msa0364550:CDS 20.0%
! ATAATTAGATCAAGCAATTG+TGG - chr3_1:57743334-57743353 None:intergenic 25.0%
! GATGAGATATTTAAAAGTGA+CGG + chr3_1:57743562-57743581 Msa0364550:intron 25.0%
! ACATTAGAGATTATCATCAT+TGG - chr3_1:57743857-57743876 None:intergenic 25.0%
!!! GTTTTGCTATAGATATTGAA+AGG + chr3_1:57743875-57743894 Msa0364550:intron 25.0%
!! TCCAAATAGATTTTCCAAAT+TGG - chr3_1:57743905-57743924 None:intergenic 25.0%
! AAAATTTAGTACCAGTATTG+TGG - chr3_1:57743951-57743970 None:intergenic 25.0%
!!! GTACTAAATTTTTTGAAGCT+GGG + chr3_1:57743959-57743978 Msa0364550:CDS 25.0%
!!! CAAATTACTTTGGAATTTGT+TGG - chr3_1:57744209-57744228 None:intergenic 25.0%
! CAAATTCCAAAGTAATTTGA+AGG + chr3_1:57744210-57744229 Msa0364550:intron 25.0%
! ATATTGAAGGGAATATAAGA+CGG - chr3_1:57744236-57744255 None:intergenic 25.0%
! ATATTCCCTTCAATATTCAA+TGG + chr3_1:57744240-57744259 Msa0364550:intron 25.0%
! TTAGACCATTGAATATTGAA+GGG - chr3_1:57744248-57744267 None:intergenic 25.0%
! TTTGATGAATAAACAATCGA+TGG + chr3_1:57744305-57744324 Msa0364550:CDS 25.0%
! TTACATTATTTCCCAAAGAA+GGG - chr3_1:57744389-57744408 None:intergenic 25.0%
! ATTACATTATTTCCCAAAGA+AGG - chr3_1:57744390-57744409 None:intergenic 25.0%
!! ATACCCTGCTTTAAATTAAA+AGG - chr3_1:57744711-57744730 None:intergenic 25.0%
! AGAGTTAATAAGTTCTTCAT+CGG + chr3_1:57744797-57744816 Msa0364550:CDS 25.0%
! TTATGCTCAGAAATAACTAA+CGG - chr3_1:57744825-57744844 None:intergenic 25.0%
!!! AAACAAATTAGTTTTAAGCC+TGG - chr3_1:57744958-57744977 None:intergenic 25.0%
! ACTAATATTTCATCATCCTT+AGG - chr3_1:57745380-57745399 None:intergenic 25.0%
!! GATGATGAAATATTAGTTTC+TGG + chr3_1:57745383-57745402 Msa0364550:CDS 25.0%
!! ATTCTTTCCTATACATTTTC+AGG + chr3_1:57745520-57745539 Msa0364550:intron 25.0%
!! TTCTTTCCTATACATTTTCA+GGG + chr3_1:57745521-57745540 Msa0364550:intron 25.0%
!! TAAAGTGTCCTTTAAAAGAA+CGG - chr3_1:57745680-57745699 None:intergenic 25.0%
!! AAGCATTTTTAATCAACATG+TGG + chr3_1:57745978-57745997 Msa0364550:CDS 25.0%
ACAAAAAATGCTTTCTACTG+TGG - chr3_1:57743122-57743141 None:intergenic 30.0%
!! TATCTTCGTTATGTTTTGGA+GGG - chr3_1:57743251-57743270 None:intergenic 30.0%
!! ATATCTTCGTTATGTTTTGG+AGG - chr3_1:57743252-57743271 None:intergenic 30.0%
TCCAAAACATAACGAAGATA+TGG + chr3_1:57743251-57743270 Msa0364550:CDS 30.0%
! TCCATATCTTCGTTATGTTT+TGG - chr3_1:57743255-57743274 None:intergenic 30.0%
GCCAATTTGGAAAATCTATT+TGG + chr3_1:57743901-57743920 Msa0364550:CDS 30.0%
!!! GGTACTAAATTTTTTGAAGC+TGG + chr3_1:57743958-57743977 Msa0364550:CDS 30.0%
TTGATTTCAAGACATTGTCA+TGG - chr3_1:57744078-57744097 None:intergenic 30.0%
GTTGGCAATAATGATATTGA+TGG - chr3_1:57744191-57744210 None:intergenic 30.0%
CTTAGACCATTGAATATTGA+AGG - chr3_1:57744249-57744268 None:intergenic 30.0%
CTTCAATATTCAATGGTCTA+AGG + chr3_1:57744247-57744266 Msa0364550:intron 30.0%
!! AACAGAAGCATTAGTTACTA+TGG - chr3_1:57744273-57744292 None:intergenic 30.0%
AATGCTTCTGTTCTTATCAT+AGG + chr3_1:57744281-57744300 Msa0364550:intron 30.0%
CTTTATATGCACAAAGAGTT+GGG - chr3_1:57744419-57744438 None:intergenic 30.0%
TTCCATGCTATACAATTAGT+CGG + chr3_1:57744512-57744531 Msa0364550:intron 30.0%
!! TAAATGAGTTGATGATGTTC+TGG - chr3_1:57744778-57744797 None:intergenic 30.0%
! TCTATTGATTAATTGCCATG+AGG + chr3_1:57744863-57744882 Msa0364550:intron 30.0%
TATGTGTAGAAATATGGTGA+TGG + chr3_1:57745108-57745127 Msa0364550:intron 30.0%
ATGTGTAGAAATATGGTGAT+GGG + chr3_1:57745109-57745128 Msa0364550:intron 30.0%
! GTAGTGGAAATTGAAAAAGA+AGG - chr3_1:57745141-57745160 None:intergenic 30.0%
GTGATGAGGTAATATAAGAA+AGG - chr3_1:57745259-57745278 None:intergenic 30.0%
AAGGGAGTTCAAAATCAAAA+GGG - chr3_1:57745281-57745300 None:intergenic 30.0%
TATTGAGGAACAATTTCCTA+AGG + chr3_1:57745361-57745380 Msa0364550:CDS 30.0%
TTTCCTTCAATACCATCTAA+AGG + chr3_1:57745434-57745453 Msa0364550:CDS 30.0%
! ATACCTTTAGATGGTATTGA+AGG - chr3_1:57745440-57745459 None:intergenic 30.0%
! ATTATGCTTCTTTGAGAACA+AGG - chr3_1:57745499-57745518 None:intergenic 30.0%
TTCTTCTTTACTTGTCACAA+GGG + chr3_1:57745573-57745592 Msa0364550:CDS 30.0%
! CTCATAATCCAAATGCTTTT+TGG - chr3_1:57745617-57745636 None:intergenic 30.0%
! GCGCAAATTTTCTTTTGATA+AGG + chr3_1:57745828-57745847 Msa0364550:CDS 30.0%
!! TTCTTTTGATAAGGATTGGT+TGG + chr3_1:57745837-57745856 Msa0364550:CDS 30.0%
!! GGCACAAATTTTAGAAACTA+AGG + chr3_1:57746062-57746081 Msa0364550:CDS 30.0%
TAACGACATAATTGAAGAGC+AGG + chr3_1:57743144-57743163 Msa0364550:CDS 35.0%
TTAGATCAAGCAATTGTGGT+AGG - chr3_1:57743330-57743349 None:intergenic 35.0%
TTTCAAATTCCTTGTCCTCA+AGG + chr3_1:57743410-57743429 Msa0364550:CDS 35.0%
TTGATCATAAGAGAAGCAGA+TGG + chr3_1:57743535-57743554 Msa0364550:CDS 35.0%
TGATCATAAGAGAAGCAGAT+GGG + chr3_1:57743536-57743555 Msa0364550:CDS 35.0%
! TATTGAAAGGTGTGCCAATT+TGG + chr3_1:57743888-57743907 Msa0364550:CDS 35.0%
!! AAATAGACTAGCATTGACCT+GGG - chr3_1:57744025-57744044 None:intergenic 35.0%
!! TAAATAGACTAGCATTGACC+TGG - chr3_1:57744026-57744045 None:intergenic 35.0%
ATGGTGATTGTATTCAGGTA+TGG - chr3_1:57744059-57744078 None:intergenic 35.0%
TTGTCATGGTGATTGTATTC+AGG - chr3_1:57744064-57744083 None:intergenic 35.0%
ACAAATGAAACAAACACCAG+AGG + chr3_1:57744121-57744140 Msa0364550:intron 35.0%
GTAGTATCAGTTTCTTCAAG+CGG - chr3_1:57744360-57744379 None:intergenic 35.0%
GCTTTATATGCACAAAGAGT+TGG - chr3_1:57744420-57744439 None:intergenic 35.0%
ATGCTATACAATTAGTCGGA+GGG + chr3_1:57744516-57744535 Msa0364550:intron 35.0%
CTCGTTCTTTGTTCTTGAAA+CGG - chr3_1:57744587-57744606 None:intergenic 35.0%
GTAGGAGTAACTACTTGTAT+AGG - chr3_1:57744613-57744632 None:intergenic 35.0%
AGTAGTTACTCCTACAAAAC+AGG + chr3_1:57744618-57744637 Msa0364550:intron 35.0%
!! ATCGAGATAAGTGTTGAAGA+AGG + chr3_1:57744729-57744748 Msa0364550:CDS 35.0%
TGAGCATAAAACAACTTCAC+AGG + chr3_1:57744836-57744855 Msa0364550:CDS 35.0%
TTGATTAATTGCCATGAGGT+TGG + chr3_1:57744867-57744886 Msa0364550:intron 35.0%
TTCCTTTAAATCCAACCTCA+TGG - chr3_1:57744881-57744900 None:intergenic 35.0%
GGTTGGATTTAAAGGAATCT+AGG + chr3_1:57744884-57744903 Msa0364550:intron 35.0%
! TGTGTAGAAATATGGTGATG+GGG + chr3_1:57745110-57745129 Msa0364550:intron 35.0%
ACCATCAAAGATGTTGTTCT+TGG + chr3_1:57745171-57745190 Msa0364550:CDS 35.0%
TCCAAGAACAACATCTTTGA+TGG - chr3_1:57745175-57745194 None:intergenic 35.0%
ACCAAGACTAATAATGACCA+AGG + chr3_1:57745210-57745229 Msa0364550:CDS 35.0%
! ACCTTGGTCATTATTAGTCT+TGG - chr3_1:57745214-57745233 None:intergenic 35.0%
TCAAAATCAAAAGGGTGATG+AGG - chr3_1:57745273-57745292 None:intergenic 35.0%
CAAGGGAGTTCAAAATCAAA+AGG - chr3_1:57745282-57745301 None:intergenic 35.0%
TAAAGAAACTGAGCACAATG+TGG - chr3_1:57745309-57745328 None:intergenic 35.0%
GAAAGTAGGCTCAAATATTG+AGG + chr3_1:57745346-57745365 Msa0364550:CDS 35.0%
AGTGTTCCCTGAAAATGTAT+AGG - chr3_1:57745530-57745549 None:intergenic 35.0%
GTTCTTCTTTACTTGTCACA+AGG + chr3_1:57745572-57745591 Msa0364550:CDS 35.0%
!! ACTAGTCTCCAAAAAGCATT+TGG + chr3_1:57745606-57745625 Msa0364550:CDS 35.0%
TAACACATCCAACACACTAT+GGG - chr3_1:57745767-57745786 None:intergenic 35.0%
!! TTTGATAAGGATTGGTTGGA+TGG + chr3_1:57745841-57745860 Msa0364550:CDS 35.0%
CTGAATTTCTTCAACTTCCT+TGG - chr3_1:57745950-57745969 None:intergenic 35.0%
!!! GACATCCTCTAAAGTTGTTT+TGG + chr3_1:57746020-57746039 Msa0364550:CDS 35.0%
ACTCTCCAAAACAACTTTAG+AGG - chr3_1:57746028-57746047 None:intergenic 35.0%
ATTGAAGAGCAGGTGAACTT+AGG + chr3_1:57743154-57743173 Msa0364550:CDS 40.0%
TTGAAGAGCAGGTGAACTTA+GGG + chr3_1:57743155-57743174 Msa0364550:CDS 40.0%
ACAAAAAGACGCGTCATCAT+AGG - chr3_1:57743208-57743227 None:intergenic 40.0%
!! TATGATGACGCGTCTTTTTG+TGG + chr3_1:57743207-57743226 Msa0364550:CDS 40.0%
!! ATGATGACGCGTCTTTTTGT+GGG + chr3_1:57743208-57743227 Msa0364550:CDS 40.0%
! TGGAGGGCAAACGAATTTTT+GGG - chr3_1:57743235-57743254 None:intergenic 40.0%
! TTGGAGGGCAAACGAATTTT+TGG - chr3_1:57743236-57743255 None:intergenic 40.0%
AGCTCATTACAAATGGAGAC+AGG - chr3_1:57743499-57743518 None:intergenic 40.0%
CCTAGGAAGCTCATTACAAA+TGG - chr3_1:57743506-57743525 None:intergenic 40.0%
CCATTTGTAATGAGCTTCCT+AGG + chr3_1:57743503-57743522 Msa0364550:CDS 40.0%
TAATGAGCTTCCTAGGCTAA+AGG + chr3_1:57743510-57743529 Msa0364550:CDS 40.0%
ATGATCAAAGCCTTTAGCCT+AGG - chr3_1:57743523-57743542 None:intergenic 40.0%
CCAAACCTCTGTCAAATAGA+GGG + chr3_1:57743637-57743656 Msa0364550:intron 40.0%
GAATTCCCTCTATTTGACAG+AGG - chr3_1:57743645-57743664 None:intergenic 40.0%
GAATCCAAAAGCCACAATAC+TGG + chr3_1:57743937-57743956 Msa0364550:CDS 40.0%
! AGTACCAGTATTGTGGCTTT+TGG - chr3_1:57743944-57743963 None:intergenic 40.0%
AATGAAACAAACACCAGAGG+AGG + chr3_1:57744124-57744143 Msa0364550:intron 40.0%
AGACGGCCTTCAAATTACTT+TGG - chr3_1:57744219-57744238 None:intergenic 40.0%
ATTTCCCAAAGAAGGGTTGA+GGG - chr3_1:57744382-57744401 None:intergenic 40.0%
TATTTCCCAAAGAAGGGTTG+AGG - chr3_1:57744383-57744402 None:intergenic 40.0%
CTCCGACTAATTGTATAGCA+TGG - chr3_1:57744517-57744536 None:intergenic 40.0%
CATGCTATACAATTAGTCGG+AGG + chr3_1:57744515-57744534 Msa0364550:intron 40.0%
!! AGTTGATGATGTTCTGGTCT+TGG - chr3_1:57744772-57744791 None:intergenic 40.0%
TGCCATGAGGTTGGATTTAA+AGG + chr3_1:57744876-57744895 Msa0364550:intron 40.0%
TGCTTAGTAATTGTACGTCC+AGG + chr3_1:57744937-57744956 Msa0364550:intron 40.0%
!! GAACAACATCTTTGATGGTG+AGG - chr3_1:57745170-57745189 None:intergenic 40.0%
! TGACCAAGGTGAAGACTTTT+TGG + chr3_1:57745224-57745243 Msa0364550:intron 40.0%
GATCCAAAAAGTCTTCACCT+TGG - chr3_1:57745230-57745249 None:intergenic 40.0%
GAGCACAATGTGGAAAACAA+GGG - chr3_1:57745299-57745318 None:intergenic 40.0%
TGAGCACAATGTGGAAAACA+AGG - chr3_1:57745300-57745319 None:intergenic 40.0%
GATGACGCTTTCATGAAAGT+AGG + chr3_1:57745332-57745351 Msa0364550:CDS 40.0%
! GCATCCTACCGTTCTTTTAA+AGG + chr3_1:57745669-57745688 Msa0364550:CDS 40.0%
! GTGTCCTTTAAAAGAACGGT+AGG - chr3_1:57745676-57745695 None:intergenic 40.0%
CTAACACATCCAACACACTA+TGG - chr3_1:57745768-57745787 None:intergenic 40.0%
CATAGTGTGTTGGATGTGTT+AGG + chr3_1:57745766-57745785 Msa0364550:CDS 40.0%
CTAACTCGACAAATTCAGAC+TGG - chr3_1:57745798-57745817 None:intergenic 40.0%
! ATTGGTTGGATGGTGTTGAA+AGG + chr3_1:57745851-57745870 Msa0364550:CDS 40.0%
TCTTGAGAGAACTGCAAATC+AGG - chr3_1:57745889-57745908 None:intergenic 40.0%
!! GGAGAGTATCATTCAACAAG+AGG + chr3_1:57746041-57746060 Msa0364550:CDS 40.0%
!! GCTCGCTTTGGAAAGAATCA+TGG + chr3_1:57743087-57743106 Msa0364550:CDS 45.0%
CGACAAGTGCTTCAAGCTTT+GGG - chr3_1:57743444-57743463 None:intergenic 45.0%
ACGACAAGTGCTTCAAGCTT+TGG - chr3_1:57743445-57743464 None:intergenic 45.0%
CTATTTGACAGAGGTTTGGC+AGG - chr3_1:57743636-57743655 None:intergenic 45.0%
GCCAAACCTCTGTCAAATAG+AGG + chr3_1:57743636-57743655 Msa0364550:intron 45.0%
CCCTCTATTTGACAGAGGTT+TGG - chr3_1:57743640-57743659 None:intergenic 45.0%
!! ACACAAGTTGATTTCCTCCC+AGG + chr3_1:57744005-57744024 Msa0364550:CDS 45.0%
TTTCTTCAAGCGGACACTGT+TGG - chr3_1:57744350-57744369 None:intergenic 45.0%
TACTACCCTCAACCCTTCTT+TGG + chr3_1:57744374-57744393 Msa0364550:CDS 45.0%
ACTACCCTCAACCCTTCTTT+GGG + chr3_1:57744375-57744394 Msa0364550:CDS 45.0%
! AAGGGAGTTGCCTGTTTTGT+AGG - chr3_1:57744631-57744650 None:intergenic 45.0%
TGTTGTTCTTGGAGACTCTC+AGG + chr3_1:57745182-57745201 Msa0364550:CDS 45.0%
GAACGGTAGGATGCTTAACA+AGG - chr3_1:57745663-57745682 None:intergenic 45.0%
TAGCTCAGCTAGACAGTTGT+AGG - chr3_1:57745728-57745747 None:intergenic 45.0%
CATCCAACACACTATGGGTT+TGG - chr3_1:57745762-57745781 None:intergenic 45.0%
TTCCAAGCAACGAGTTACCA+AGG + chr3_1:57745930-57745949 Msa0364550:CDS 45.0%
! TTCCTTGGTAACTCGTTGCT+TGG - chr3_1:57745935-57745954 None:intergenic 45.0%
GAAGCATGTCCTTGAGGACA+AGG - chr3_1:57743422-57743441 None:intergenic 50.0%
! CTTTGGGAAGCATGTCCTTG+AGG - chr3_1:57743428-57743447 None:intergenic 50.0%
AGCTGGGATTGAAGTTGACG+CGG + chr3_1:57743975-57743994 Msa0364550:CDS 50.0%
ATTGAAGTTGACGCGGCATC+AGG + chr3_1:57743982-57744001 Msa0364550:CDS 50.0%
!! TAGACTAGCATTGACCTGGG+AGG - chr3_1:57744022-57744041 None:intergenic 50.0%
CCAACACACTATGGGTTTGG+AGG - chr3_1:57745759-57745778 None:intergenic 50.0%
CCTCCAAACCCATAGTGTGT+TGG + chr3_1:57745756-57745775 Msa0364550:CDS 50.0%
ACAAACACCAGAGGAGGCAG+AGG + chr3_1:57744130-57744149 Msa0364550:intron 55.0%
CAAACACCAGAGGAGGCAGA+GGG + chr3_1:57744131-57744150 Msa0364550:intron 55.0%
GATGGTGAGGAGCTCTGTAG+TGG - chr3_1:57745157-57745176 None:intergenic 55.0%
!! GCAGCTTTAAGTGCCCCTCT+TGG + chr3_1:57746084-57746103 Msa0364550:CDS 55.0%
CATTCACCCTCTGCCTCCTC+TGG - chr3_1:57744140-57744159 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 57743076 57746116 57743076 ID=Msa0364550;Name=Msa0364550
chr3_1 mRNA 57743076 57746116 57743076 ID=Msa0364550-mRNA-1;Parent=Msa0364550;Name=Msa0364550-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|1|1|7|0|566
chr3_1 exon 57743076 57743577 57743076 ID=Msa0364550-mRNA-1:exon:10884;Parent=Msa0364550-mRNA-1
chr3_1 exon 57743887 57744026 57743887 ID=Msa0364550-mRNA-1:exon:10885;Parent=Msa0364550-mRNA-1
chr3_1 exon 57744303 57744404 57744303 ID=Msa0364550-mRNA-1:exon:10886;Parent=Msa0364550-mRNA-1
chr3_1 exon 57744726 57744857 57744726 ID=Msa0364550-mRNA-1:exon:10887;Parent=Msa0364550-mRNA-1
chr3_1 exon 57745117 57745231 57745117 ID=Msa0364550-mRNA-1:exon:10888;Parent=Msa0364550-mRNA-1
chr3_1 exon 57745321 57745455 57745321 ID=Msa0364550-mRNA-1:exon:10889;Parent=Msa0364550-mRNA-1
chr3_1 exon 57745542 57746116 57745542 ID=Msa0364550-mRNA-1:exon:10890;Parent=Msa0364550-mRNA-1
chr3_1 CDS 57743076 57743577 57743076 ID=Msa0364550-mRNA-1:cds;Parent=Msa0364550-mRNA-1
chr3_1 CDS 57743887 57744026 57743887 ID=Msa0364550-mRNA-1:cds;Parent=Msa0364550-mRNA-1
chr3_1 CDS 57744303 57744404 57744303 ID=Msa0364550-mRNA-1:cds;Parent=Msa0364550-mRNA-1
chr3_1 CDS 57744726 57744857 57744726 ID=Msa0364550-mRNA-1:cds;Parent=Msa0364550-mRNA-1
chr3_1 CDS 57745117 57745231 57745117 ID=Msa0364550-mRNA-1:cds;Parent=Msa0364550-mRNA-1
chr3_1 CDS 57745321 57745455 57745321 ID=Msa0364550-mRNA-1:cds;Parent=Msa0364550-mRNA-1
chr3_1 CDS 57745542 57746116 57745542 ID=Msa0364550-mRNA-1:cds;Parent=Msa0364550-mRNA-1
Gene Sequence

>Msa0364550

ATGGAACATTGGCTCGCTTTGGAAAGAATCATGGTATATAACACCACAGTAGAAAGCATTTTTTGTCGTAACGACATAATTGAAGAGCAGGTGAACTTAGGGTTGAAAAACGTCGATCTGCACGATCTACCTATGATGACGCGTCTTTTTGTGGGTCCCAAAAATTCGTTTGCCCTCCAAAACATAACGAAGATATGGATAGTGCGATGTGCAAAATTGCAAGTAATTTTCTCTTCTGCTATGTTAAGATGCCTACCACAATTGCTTGATCTAATTATAGAAGAACGTGATGAGTTGAAGCATATCATTGAAGATGATTTAGAGAATAAAATAATTTCAAATTCCTTGTCCTCAAGGACATGCTTCCCAAAGCTTGAAGCACTTGTCGTAGTAAAATGCAACAAGTTGAAATGTATGCTTCCTGTCTCCATTTGTAATGAGCTTCCTAGGCTAAAGGCTTTGATCATAAGAGAAGCAGATGGGATAGATGAGATATTTAAAAATATTGAAAGGTGTGCCAATTTGGAAAATCTATTTGGACAATTACGAAGAGAATCCAAAAGCCACAATACTGGTACTAAATTTTTTGAAGCTGGGATTGAAGTTGACGCGGCATCAGGACACAAGTTGATTTCCTCCCAGGATTTGATGAATAAACAATCGATGGATCAACAATGTTTGATGAACCAACAGTGTCCGCTTGAAGAAACTGATACTACCCTCAACCCTTCTTTGGGAAATAATGGTATCGAGATAAGTGTTGAAGAAGGAAGTACTTCAACTTATGCCAAGACCAGAACATCATCAACTCATTTAGAGTTAATAAGTTCTTCATCGGATCCGTTAGTTATTTCTGAGCATAAAACAACTTCACAGAAATATGGTGATGGGGACATACCTTCTTTTTCAATTTCCACTACAGAGCTCCTCACCATCAAAGATGTTGTTCTTGGAGACTCTCAGGAAAATACCAAGACTAATAATGACCAAGTTTCTTTAAATGATGACGCTTTCATGAAAGTAGGCTCAAATATTGAGGAACAATTTCCTAAGGATGATGAAATATTAGTTTCTGGATCAAGACTCTCTTATACTGCATCTCAGTTTCCTTCAATACCATCTAAAGGGAACACTACTCAAATAGTAGAAGATTTAAGTTCTTCTTTACTTGTCACAAGGGAGCTTGAGCAACTAGTCTCCAAAAAGCATTTGGATTATGAGAACTTATCTTTGTTGACTGATTTCCTTGTTAAGCATCCTACCGTTCTTTTAAAGGACACTTTACTAAGTAATAGATACAAAGGTTATGCCTACAACTGTCTAGCTGAGCTATTGAAATTCCTCCAAACCCATAGTGTGTTGGATGTGTTAGGTTCAAGCCAGTCTGAATTTGTCGAGTTAGTACAAGATGTGCGCAAATTTTCTTTTGATAAGGATTGGTTGGATGGTGTTGAAAGGCACGCTATGTTTCCTGATTTGCAGTTCTCTCAAGATGCACTGCAAAAACTATTCGATTCCAAGCAACGAGTTACCAAGGAAGTTGAAGAAATTCAGTTGAAGATAAGCATTTTTAATCAACATGTGGAAGATCTTAAACATCAATTGACATCCTCTAAAGTTGTTTTGGAGAGTATCATTCAACAAGAGGCACAAATTTTAGAAACTAAGGCAGCTTTAAGTGCCCCTCTTGGCTATAATTAA

Protein sequence

>Msa0364550

MEHWLALERIMVYNTTVESIFCRNDIIEEQVNLGLKNVDLHDLPMMTRLFVGPKNSFALQNITKIWIVRCAKLQVIFSSAMLRCLPQLLDLIIEERDELKHIIEDDLENKIISNSLSSRTCFPKLEALVVVKCNKLKCMLPVSICNELPRLKALIIREADGIDEIFKNIERCANLENLFGQLRRESKSHNTGTKFFEAGIEVDAASGHKLISSQDLMNKQSMDQQCLMNQQCPLEETDTTLNPSLGNNGIEISVEEGSTSTYAKTRTSSTHLELISSSSDPLVISEHKTTSQKYGDGDIPSFSISTTELLTIKDVVLGDSQENTKTNNDQVSLNDDAFMKVGSNIEEQFPKDDEILVSGSRLSYTASQFPSIPSKGNTTQIVEDLSSSLLVTRELEQLVSKKHLDYENLSLLTDFLVKHPTVLLKDTLLSNRYKGYAYNCLAELLKFLQTHSVLDVLGSSQSEFVELVQDVRKFSFDKDWLDGVERHAMFPDLQFSQDALQKLFDSKQRVTKEVEEIQLKISIFNQHVEDLKHQLTSSKVVLESIIQQEAQILETKAALSAPLGYN*