AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0322460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0322460 MtrunA17_Chr2g0299691 96.386 332 12 0 1 332 28 359 0.0 667
Msa0322460 MtrunA17_Chr4g0070951 68.944 322 97 2 11 332 12 330 1.20e-159 449
Msa0322460 MtrunA17_Chr1g0175561 55.799 319 135 2 16 331 11 326 2.57e-123 357
Msa0322460 MtrunA17_Chr7g0258811 54.321 324 142 2 11 331 51 371 1.45e-122 357
Msa0322460 MtrunA17_Chr2g0292211 50.000 334 157 4 4 332 14 342 3.42e-110 325
Msa0322460 MtrunA17_Chr8g0372601 52.564 312 142 2 23 332 24 331 7.95e-110 323
Msa0322460 MtrunA17_Chr5g0404721 52.903 310 140 2 25 332 26 331 1.19e-109 322
Msa0322460 MtrunA17_Chr2g0291751 50.909 330 150 3 11 331 4 330 2.51e-107 317
Msa0322460 MtrunA17_Chr2g0320101 51.084 323 143 5 11 331 8 317 1.30e-105 311
Msa0322460 MtrunA17_Chr2g0292181 51.466 307 144 2 28 332 37 340 2.91e-105 312
Msa0322460 MtrunA17_Chr3g0129051 50.602 332 146 7 4 331 5 322 7.76e-105 310
Msa0322460 MtrunA17_Chr5g0438021 50.920 326 141 6 10 331 15 325 2.38e-104 308
Msa0322460 MtrunA17_Chr5g0402581 51.792 307 139 4 28 331 26 326 3.61e-104 308
Msa0322460 MtrunA17_Chr2g0292241 49.837 307 149 2 28 332 28 331 3.68e-104 309
Msa0322460 MtrunA17_Chr2g0320051 51.961 306 134 3 28 331 24 318 4.06e-104 308
Msa0322460 MtrunA17_Chr5g0402571 51.466 307 140 4 28 331 26 326 1.03e-103 307
Msa0322460 MtrunA17_Chr2g0320071 49.536 323 148 4 11 331 8 317 1.08e-103 306
Msa0322460 MtrunA17_Chr2g0292251 50.489 307 147 2 28 332 27 330 1.76e-103 307
Msa0322460 MtrunA17_Chr3g0114451 48.943 331 149 5 8 331 1 318 1.17e-102 304
Msa0322460 MtrunA17_Chr2g0320061 50.155 323 147 4 11 331 8 318 1.53e-102 304
Msa0322460 MtrunA17_Chr3g0106921 52.258 310 129 6 28 331 24 320 2.49e-102 303
Msa0322460 MtrunA17_Chr5g0432441 51.220 328 139 6 10 331 14 326 3.85e-102 303
Msa0322460 MtrunA17_Chr2g0292091 50.163 307 148 2 28 332 23 326 2.12e-101 301
Msa0322460 MtrunA17_Chr2g0292101 50.327 306 147 2 28 331 24 326 1.00e-100 300
Msa0322460 MtrunA17_Chr7g0244461 48.265 317 150 3 17 331 8 312 2.71e-100 298
Msa0322460 MtrunA17_Chr2g0292271 46.547 333 173 2 1 331 1 330 3.20e-100 299
Msa0322460 MtrunA17_Chr2g0320031 46.933 326 160 3 8 331 5 319 9.60e-100 296
Msa0322460 MtrunA17_Chr4g0038171 50.000 312 135 5 28 331 23 321 4.40e-99 295
Msa0322460 MtrunA17_Chr2g0292151 50.000 306 148 2 28 331 28 330 2.42e-98 294
Msa0322460 MtrunA17_Chr3g0129061 52.188 320 136 6 16 331 16 322 2.59e-98 293
Msa0322460 MtrunA17_Chr2g0292111 49.346 306 150 2 28 331 28 330 4.79e-98 293
Msa0322460 MtrunA17_Chr4g0043391 46.809 329 157 5 11 331 6 324 4.53e-97 290
Msa0322460 MtrunA17_Chr3g0129041 52.322 323 135 6 13 331 15 322 4.94e-97 290
Msa0322460 MtrunA17_Chr2g0292261 49.346 306 150 2 28 331 28 330 5.36e-97 291
Msa0322460 MtrunA17_Chr4g0038151 49.191 309 141 4 28 331 24 321 9.19e-97 289
Msa0322460 MtrunA17_Chr4g0013171 47.077 325 156 5 11 331 9 321 1.95e-96 288
Msa0322460 MtrunA17_Chr7g0244451 49.838 309 141 4 25 331 20 316 2.85e-96 288
Msa0322460 MtrunA17_Chr4g0068621 48.377 308 151 3 26 331 35 336 4.92e-96 288
Msa0322460 MtrunA17_Chr5g0400331 50.645 310 142 5 29 331 26 331 3.81e-95 285
Msa0322460 MtrunA17_Chr4g0038161 48.220 309 144 4 28 331 23 320 3.92e-95 285
Msa0322460 MtrunA17_Chr2g0320091 47.692 325 152 6 11 331 8 318 4.32e-95 285
Msa0322460 MtrunA17_Chr4g0013181 49.505 303 137 5 33 331 63 353 1.05e-93 282
Msa0322460 MtrunA17_Chr4g0013201 46.326 313 154 3 21 331 38 338 1.28e-93 281
Msa0322460 MtrunA17_Chr5g0432351 47.239 326 156 7 11 331 7 321 5.33e-92 277
Msa0322460 MtrunA17_Chr4g0013721 47.869 305 149 4 29 331 100 396 1.48e-91 279
Msa0322460 MtrunA17_Chr2g0292291 46.429 308 159 3 28 332 29 333 2.31e-91 276
Msa0322460 MtrunA17_Chr4g0013821 46.078 306 155 4 29 332 28 325 3.21e-91 276
Msa0322460 MtrunA17_Chr1g0155611 48.197 305 153 2 29 331 46 347 6.12e-91 275
Msa0322460 MtrunA17_Chr3g0106901 48.607 323 149 4 11 331 16 323 6.14e-91 274
Msa0322460 MtrunA17_Chr5g0432341 46.933 326 157 7 11 331 7 321 3.81e-90 272
Msa0322460 MtrunA17_Chr4g0024121 44.753 324 170 5 11 331 9 326 4.66e-89 270
Msa0322460 MtrunA17_Chr5g0432331 46.296 324 155 8 16 331 40 352 1.76e-88 269
Msa0322460 MtrunA17_Chr2g0322861 45.399 326 169 5 10 332 68 387 1.73e-86 265
Msa0322460 MtrunA17_Chr4g0063671 46.082 319 159 5 18 331 10 320 1.80e-86 263
Msa0322460 MtrunA17_Chr2g0279041 46.865 303 149 5 33 331 31 325 4.30e-86 262
Msa0322460 MtrunA17_Chr7g0224371 43.293 328 170 6 8 332 9 323 5.29e-85 259
Msa0322460 MtrunA17_Chr4g0013191 45.338 311 155 6 26 331 40 340 7.04e-85 259
Msa0322460 MtrunA17_Chr3g0107881 45.955 309 152 6 28 331 26 324 1.79e-83 255
Msa0322460 MtrunA17_Chr1g0213061 43.202 331 170 7 7 332 5 322 1.36e-82 253
Msa0322460 MtrunA17_Chr5g0405991 43.598 328 169 9 7 331 2 316 3.26e-81 249
Msa0322460 MtrunA17_Chr1g0204011 42.901 324 167 7 11 331 14 322 9.04e-81 248
Msa0322460 MtrunA17_Chr5g0421411 46.619 281 144 4 56 332 8 286 5.54e-80 245
Msa0322460 MtrunA17_Chr6g0477071 44.590 305 151 8 29 331 54 342 8.01e-79 244
Msa0322460 MtrunA17_Chr1g0194151 43.243 333 176 6 7 331 6 333 2.61e-77 240
Msa0322460 MtrunA17_Chr7g0268501 42.547 322 170 7 13 331 11 320 1.29e-76 238
Msa0322460 MtrunA17_Chr7g0268521 42.547 322 170 7 13 331 11 320 1.29e-76 238
Msa0322460 MtrunA17_Chr3g0128061 40.896 335 187 4 1 332 1 327 2.02e-76 237
Msa0322460 MtrunA17_Chr8g0371381 43.042 309 161 8 26 331 23 319 1.04e-75 235
Msa0322460 MtrunA17_Chr7g0225221 40.854 328 180 6 6 331 5 320 3.45e-75 234
Msa0322460 MtrunA17_Chr1g0194271 42.059 340 177 6 7 331 6 340 5.91e-75 234
Msa0322460 MtrunA17_Chr5g0401431 36.826 334 182 5 13 330 8 328 4.19e-73 229
Msa0322460 MtrunA17_Chr1g0197411 39.157 332 186 6 11 331 4 330 6.71e-73 228
Msa0322460 MtrunA17_Chr1g0148021 38.462 325 190 4 12 331 9 328 1.99e-72 227
Msa0322460 MtrunA17_Chr4g0076211 41.196 301 161 7 34 331 46 333 1.17e-71 225
Msa0322460 MtrunA17_Chr4g0072091 40.728 302 172 2 28 327 23 319 1.48e-71 224
Msa0322460 MtrunA17_Chr7g0254201 40.000 300 168 6 33 331 24 312 2.07e-71 224
Msa0322460 MtrunA17_Chr5g0432401 40.426 329 138 7 10 330 7 285 3.33e-71 223
Msa0322460 MtrunA17_Chr6g0467161 40.122 329 174 7 12 332 24 337 4.91e-71 224
Msa0322460 MtrunA17_Chr1g0188431 41.104 326 170 8 13 331 17 327 5.78e-71 223
Msa0322460 MtrunA17_Chr1g0157051 42.071 309 165 7 25 330 20 317 7.36e-71 223
Msa0322460 MtrunA17_Chr2g0316791 38.123 341 172 6 26 332 73 408 1.19e-70 225
Msa0322460 MtrunA17_Chr2g0278671 42.208 308 167 6 28 331 23 323 1.42e-70 222
Msa0322460 MtrunA17_Chr2g0279061 47.148 263 127 5 73 331 12 266 2.63e-70 219
Msa0322460 MtrunA17_Chr2g0316191 37.719 342 173 6 26 332 73 409 8.06e-70 223
Msa0322460 MtrunA17_Chr2g0316481 37.243 341 175 6 26 332 73 408 1.11e-69 223
Msa0322460 MtrunA17_Chr2g0316831 37.537 341 174 6 26 332 109 444 1.60e-69 223
Msa0322460 MtrunA17_Chr2g0329641 37.237 333 188 6 13 332 12 336 4.88e-69 219
Msa0322460 MtrunA17_Chr2g0296621 41.196 301 164 7 33 332 54 342 1.70e-68 218
Msa0322460 MtrunA17_Chr6g0460711 39.564 321 178 7 13 331 8 314 3.23e-68 216
Msa0322460 MtrunA17_Chr1g0164891 42.623 305 164 6 33 331 93 392 3.51e-68 218
Msa0322460 MtrunA17_Chr8g0364291 39.692 325 187 5 12 332 6 325 3.63e-68 216
Msa0322460 MtrunA17_Chr6g0467121 39.024 328 183 5 8 331 49 363 4.58e-68 218
Msa0322460 MtrunA17_Chr4g0053871 37.846 325 185 6 12 330 10 323 1.38e-67 214
Msa0322460 MtrunA17_Chr7g0254231 39.404 302 166 6 33 332 26 312 1.44e-67 214
Msa0322460 MtrunA17_Chr2g0311251 37.243 341 174 7 26 332 8 342 4.59e-67 214
Msa0322460 MtrunA17_Chr2g0311241 34.383 381 171 7 26 332 57 432 5.02e-65 211
Msa0322460 MtrunA17_Chr4g0046131 38.690 336 181 7 11 327 13 342 1.01e-64 208
Msa0322460 MtrunA17_Chr6g0467251 38.344 326 177 9 11 327 14 324 2.48e-60 196
Msa0322460 MtrunA17_Chr1g0181511 35.922 309 184 7 28 332 26 324 1.31e-56 186
Msa0322460 MtrunA17_Chr4g0075241 34.628 309 192 5 26 331 26 327 3.60e-55 182
Msa0322460 MtrunA17_Chr3g0136751 36.513 304 178 6 33 331 29 322 4.20e-55 182
Msa0322460 MtrunA17_Chr5g0413051 35.161 310 181 8 33 331 77 377 1.84e-54 182
Msa0322460 MtrunA17_Chr4g0074851 34.615 338 190 8 7 332 11 329 1.90e-54 181
Msa0322460 MtrunA17_Chr6g0451571 36.508 315 176 8 28 331 33 334 5.75e-54 180
Msa0322460 MtrunA17_Chr1g0181481 35.127 316 177 7 28 332 26 324 6.05e-54 179
Msa0322460 MtrunA17_Chr1g0181431 33.861 316 181 7 28 332 26 324 7.94e-52 174
Msa0322460 MtrunA17_Chr2g0292281 43.458 214 108 2 119 332 17 217 1.27e-49 166
Msa0322460 MtrunA17_Chr3g0114461 46.392 194 93 2 138 331 10 192 1.42e-49 164
Msa0322460 MtrunA17_Chr4g0004591 33.333 318 149 4 33 330 81 355 3.66e-49 168
Msa0322460 MtrunA17_Chr2g0316811 39.662 237 123 4 26 243 47 282 1.73e-47 163
Msa0322460 MtrunA17_Chr2g0316141 33.447 293 137 8 75 332 11 280 7.95e-43 149
Msa0322460 MtrunA17_Chr2g0316181 33.447 293 137 8 75 332 11 280 7.95e-43 149
Msa0322460 MtrunA17_Chr3g0114491 61.062 113 41 2 28 137 17 129 1.14e-39 136
Msa0322460 MtrunA17_Chr1g0181501 32.828 198 119 4 138 332 4 190 9.86e-25 99.0
Msa0322460 MtrunA17_Chr2g0316771 28.177 181 95 3 177 327 7 182 1.35e-22 93.2
Msa0322460 MtrunA17_Chr3g0104101 35.811 148 91 3 187 332 5 150 3.85e-21 88.2
Msa0322460 MtrunA17_Chr5g0432321 37.903 124 69 2 148 271 17 132 7.23e-21 87.0
Msa0322460 MtrunA17_Chr6g0468731 59.420 69 26 2 68 136 22 88 1.28e-18 79.7
Msa0322460 MtrunA17_Chr4g0013811 44.595 74 41 0 137 210 5 78 6.10e-18 77.4
Msa0322460 MtrunA17_Chr1g0181491 39.815 108 63 2 28 134 11 117 1.66e-16 75.5
Msa0322460 MtrunA17_Chr7g0254181 41.053 95 53 1 99 193 31 122 1.28e-15 73.2
Msa0322460 MtrunA17_Chr5g0432361 39.362 94 52 2 237 330 20 108 9.83e-15 69.3
Msa0322460 MtrunA17_Chr7g0268491 43.478 92 44 3 241 331 13 97 8.29e-14 66.6
Msa0322460 MtrunA17_Chr1g0196191 53.030 66 28 2 71 134 27 91 5.03e-12 63.2
Msa0322460 MtrunA17_Chr5g0423911 42.254 71 36 1 257 327 2 67 6.48e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0322460 AT5G19890.1 58.258 333 133 5 1 332 1 328 1.89e-133 383
Msa0322460 AT5G06720.1 55.556 306 131 2 28 331 31 333 1.17e-117 343
Msa0322460 AT5G06730.1 52.000 325 149 3 11 331 13 334 2.07e-116 341
Msa0322460 AT4G36430.1 53.722 309 137 2 26 332 27 331 2.84e-114 334
Msa0322460 AT2G18150.1 53.115 305 137 2 29 331 36 336 1.77e-111 327
Msa0322460 AT2G38390.1 50.814 307 145 3 28 331 30 333 1.56e-107 318
Msa0322460 AT2G18140.1 52.131 305 140 2 29 331 35 335 1.78e-107 317
Msa0322460 AT5G66390.1 49.541 327 159 2 7 331 11 333 2.24e-107 317
Msa0322460 AT5G05340.1 53.074 309 127 5 28 331 29 324 8.03e-106 313
Msa0322460 AT2G38380.1 49.849 331 158 4 4 331 8 333 2.12e-105 312
Msa0322460 AT3G50990.1 51.475 305 142 2 29 331 41 341 4.35e-105 311
Msa0322460 AT1G49570.1 53.000 300 131 4 33 327 52 346 2.31e-102 305
Msa0322460 AT3G32980.1 50.649 308 147 3 28 332 30 335 2.44e-102 305
Msa0322460 AT4G08770.1 49.351 308 151 3 28 332 23 328 3.24e-99 296
Msa0322460 AT5G19880.1 50.617 324 147 4 13 331 14 329 1.12e-98 295
Msa0322460 AT1G44970.1 51.803 305 142 2 29 331 45 346 4.17e-98 294
Msa0322460 AT4G16270.1 51.495 301 138 3 33 331 54 348 2.22e-97 292
Msa0322460 AT3G49110.1 49.675 308 150 3 28 332 32 337 1.33e-96 290
Msa0322460 AT3G49120.1 49.675 308 150 3 28 332 31 336 1.40e-96 290
Msa0322460 AT4G08780.1 47.403 308 157 3 28 332 23 328 4.05e-96 289
Msa0322460 AT1G14550.1 45.679 324 163 4 11 331 8 321 8.83e-94 282
Msa0322460 AT5G58390.1 50.155 323 146 5 13 331 5 316 1.94e-93 281
Msa0322460 AT5G58400.1 46.828 331 158 7 6 331 8 325 5.60e-92 277
Msa0322460 AT2G35380.1 48.580 317 156 4 20 331 21 335 3.51e-90 273
Msa0322460 AT2G22420.1 44.237 321 169 4 13 331 7 319 4.34e-90 273
Msa0322460 AT5G64120.1 47.492 299 148 5 33 331 39 328 6.93e-89 270
Msa0322460 AT2G41480.1 45.122 328 166 6 10 331 9 328 4.43e-87 265
Msa0322460 AT1G68850.1 43.871 310 165 5 29 332 30 336 5.15e-87 265
Msa0322460 AT1G14540.1 43.252 326 172 4 8 331 1 315 4.43e-86 262
Msa0322460 AT4G11290.1 44.805 308 161 4 28 331 24 326 4.13e-85 260
Msa0322460 AT5G39580.1 45.231 325 168 6 8 331 4 319 2.12e-84 258
Msa0322460 AT5G15180.1 42.073 328 180 6 8 331 8 329 2.16e-84 258
Msa0322460 AT1G05260.1 42.508 327 181 4 8 332 5 326 3.23e-83 255
Msa0322460 AT3G01190.1 43.533 317 170 5 16 331 13 321 2.32e-82 253
Msa0322460 AT5G17820.1 41.875 320 170 6 12 331 10 313 3.39e-78 242
Msa0322460 AT5G51890.1 40.741 324 178 7 12 331 9 322 5.32e-77 239
Msa0322460 AT5G17820.2 42.006 319 169 6 13 331 64 366 9.55e-77 240
Msa0322460 AT5G64110.1 42.073 328 177 6 10 331 10 330 1.37e-76 238
Msa0322460 AT3G03670.1 42.378 328 176 6 8 331 3 321 2.40e-76 237
Msa0322460 AT5G14130.1 39.319 323 188 4 11 331 14 330 3.67e-76 237
Msa0322460 AT3G21770.1 42.345 307 170 4 28 332 28 329 3.75e-76 237
Msa0322460 AT1G05240.1 41.935 310 168 6 27 331 23 325 4.31e-76 237
Msa0322460 AT1G05250.1 41.935 310 168 6 27 331 23 325 4.31e-76 237
Msa0322460 AT5G14130.2 39.009 323 189 4 11 331 55 371 1.64e-75 237
Msa0322460 AT1G77100.1 43.939 330 165 9 8 331 4 319 3.03e-74 232
Msa0322460 AT5G42180.1 42.295 305 162 7 29 330 23 316 4.31e-74 231
Msa0322460 AT4G25980.1 40.122 329 180 5 8 331 10 326 1.81e-73 230
Msa0322460 AT4G37530.1 41.100 309 172 4 28 331 26 329 3.36e-73 229
Msa0322460 AT2G18980.1 39.385 325 185 5 11 331 7 323 2.52e-72 227
Msa0322460 AT1G71695.1 41.720 314 166 8 24 332 39 340 3.30e-72 228
Msa0322460 AT4G30170.1 40.584 308 171 5 28 331 26 325 8.20e-71 223
Msa0322460 AT4G33870.1 36.571 350 178 6 16 327 54 397 1.55e-70 225
Msa0322460 AT4G37520.1 38.835 309 179 4 28 331 26 329 2.77e-70 222
Msa0322460 AT5G64100.1 41.472 299 167 6 33 331 41 331 2.41e-69 219
Msa0322460 AT4G33420.1 42.623 305 157 8 29 331 37 325 4.35e-69 219
Msa0322460 AT4G33420.2 42.105 304 160 7 29 331 84 372 1.35e-68 219
Msa0322460 AT4G17690.1 39.365 315 167 6 27 332 24 323 1.58e-68 217
Msa0322460 AT5G24070.1 39.423 312 173 7 28 332 34 336 1.66e-68 218
Msa0322460 AT2G35380.2 47.967 246 123 3 89 331 4 247 7.07e-68 213
Msa0322460 AT2G43480.1 40.694 317 169 8 25 331 28 335 7.72e-68 216
Msa0322460 AT4G37520.2 38.188 309 178 5 28 331 26 326 1.73e-67 215
Msa0322460 AT5G67400.1 38.024 334 192 5 8 331 1 329 7.59e-65 208
Msa0322460 AT3G49960.1 38.188 309 181 4 28 331 26 329 3.77e-64 206
Msa0322460 AT5G22410.1 38.509 322 183 9 12 328 11 322 2.89e-63 204
Msa0322460 AT4G37530.2 42.913 254 140 3 28 276 26 279 3.52e-63 202
Msa0322460 AT5G47000.1 36.970 330 181 6 16 332 16 331 8.71e-63 203
Msa0322460 AT2G34060.1 37.695 321 184 5 20 329 29 344 1.05e-62 203
Msa0322460 AT5G40150.1 37.580 314 170 6 28 331 31 328 1.17e-62 202
Msa0322460 AT2G24800.1 40.323 310 169 7 28 331 30 329 2.08e-62 202
Msa0322460 AT2G39040.1 39.936 313 172 7 28 331 45 350 1.27e-60 198
Msa0322460 AT1G30870.1 39.172 314 173 8 24 332 46 346 8.12e-60 196
Msa0322460 AT4G26010.1 37.423 326 179 8 9 331 6 309 1.04e-59 194
Msa0322460 AT4G26010.2 37.423 326 179 8 9 331 34 337 1.76e-59 194
Msa0322460 AT3G28200.1 36.538 312 175 5 28 331 20 316 5.01e-59 192
Msa0322460 AT4G31760.1 36.364 330 194 8 8 331 7 326 5.28e-59 193
Msa0322460 AT4G21960.1 33.828 337 194 6 7 332 10 328 1.11e-58 192
Msa0322460 AT1G34510.1 35.152 330 190 8 6 332 2 310 4.40e-58 190
Msa0322460 AT1G24110.1 34.535 333 192 5 11 331 4 322 1.85e-55 184
Msa0322460 AT2G37130.2 33.882 304 186 6 33 331 3 296 2.25e-47 162
Msa0322460 AT2G37130.1 33.882 304 186 6 33 331 34 327 4.50e-47 162
Msa0322460 AT5G39580.2 47.668 193 98 3 11 203 7 196 2.44e-46 157
Msa0322460 AT3G17070.1 30.952 336 213 6 7 331 12 339 3.00e-45 157
Msa0322460 AT4G25980.2 46.914 162 84 2 33 194 75 234 1.95e-42 149
Msa0322460 AT2G24800.2 40.385 208 111 6 28 228 30 231 7.30e-35 127
Msa0322460 AT3G17070.2 30.224 268 171 6 71 331 18 276 3.86e-33 124
Msa0322460 AT1G77490.2 27.941 204 110 7 120 314 165 340 4.55e-14 73.2
Msa0322460 AT1G77490.1 28.079 203 109 7 120 313 165 339 5.92e-14 72.8
Msa0322460 AT3G42570.1 30.201 149 95 3 47 194 9 149 9.21e-14 68.6

Find 49 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTCAAGAATTTACTTAA+TGG 0.187588 2_4:+25014271 Msa0322460:CDS
TTTCATTCTCACTATAATAT+TGG 0.220447 2_4:-25014369 None:intergenic
AAAGACGTTGTTACTTTATC+AGG 0.235960 2_4:+25011626 Msa0322460:CDS
CATCACTTGAAAAGAGAATT+TGG 0.238726 2_4:-25014315 None:intergenic
GGGAATATAAATCCACTTAT+TGG 0.243677 2_4:+25014433 Msa0322460:CDS
TCAAATTGATCAATTGAGTA+TGG 0.254466 2_4:-25014241 None:intergenic
TCTTTAGGTGCCCACACTAT+TGG 0.348442 2_4:+25014070 Msa0322460:intron
ATTGTCTGGTTCTTGTGTTC+CGG 0.349407 2_4:-25014137 None:intergenic
CCTCTAGCTGAATTTCTGTT+TGG 0.364874 2_4:-25010917 None:intergenic
CCTAGCTGAACGTACCAAAA+AGG 0.375211 2_4:-25011491 None:intergenic
AACAGAATCTCTAGCAACTA+TGG 0.388400 2_4:-25011017 None:intergenic
TGCTTATGCTATGATTAAGA+TGG 0.393325 2_4:+25014411 Msa0322460:CDS
GATGGTTCAGTTCTGCTTGA+TGG 0.400241 2_4:+25010866 Msa0322460:CDS
CACTTCAACCACTAAACAAT+TGG 0.408952 2_4:+25014345 Msa0322460:CDS
TTTGAGTGTGGCTGAACCTA+TGG 0.420869 2_4:+25009805 Msa0322460:CDS
AAGAATTTACTTAATGGAAA+AGG 0.424516 2_4:+25014277 Msa0322460:CDS
ATATTGGACCAATTGTTTAG+TGG 0.439020 2_4:-25014353 None:intergenic
TCATATTCTAAAGTATTGTC+TGG 0.440491 2_4:-25014151 None:intergenic
TTTGGCTCTCAGGGTTGTGA+TGG 0.446467 2_4:+25010848 Msa0322460:intron
TTACATTTACAAAGCAATCA+TGG 0.460562 2_4:-25009955 None:intergenic
GCTTATGCTATGATTAAGAT+GGG 0.463212 2_4:+25014412 Msa0322460:CDS
AACAGATTATTCAACTTCTC+CGG 0.465572 2_4:+25014118 Msa0322460:CDS
AAGACCAACGTTATCAAACT+TGG 0.468625 2_4:-25011597 None:intergenic
TTGGTTCTGAGGGAGAGATT+AGG 0.479464 2_4:+25014452 Msa0322460:CDS
AGAGAATTTGGTCAGAGCTA+AGG 0.483371 2_4:-25014303 None:intergenic
GCTAGGACGCAGAGATGGAT+TGG 0.510343 2_4:+25011508 Msa0322460:CDS
TCTCCCTCAGAACCAATAAG+TGG 0.511178 2_4:-25014445 None:intergenic
ATAGTACTTAGTGAGTCAAA+TGG 0.513048 2_4:-25011569 None:intergenic
AATCCACTTATTGGTTCTGA+GGG 0.517484 2_4:+25014442 Msa0322460:CDS
AAATCCACTTATTGGTTCTG+AGG 0.528451 2_4:+25014441 Msa0322460:CDS
CAAATTGATCAATTGAGTAT+GGG 0.540687 2_4:-25014240 None:intergenic
CAAAACTTGTGTCCACAAGA+TGG 0.549054 2_4:+25014190 Msa0322460:CDS
CAATTGTTTAGTGGTTGAAG+TGG 0.559168 2_4:-25014344 None:intergenic
ATTTCCAAGTTTGATAACGT+TGG 0.559993 2_4:+25011593 Msa0322460:CDS
GTGTTACCATCTCCATCTTG+TGG 0.563148 2_4:-25014202 None:intergenic
ACCTAGCTCGTCCAATAGTG+TGG 0.565589 2_4:-25014081 None:intergenic
CTTAGTGAGTCAAATGGAGA+AGG 0.571397 2_4:-25011563 None:intergenic
GGGGTCAATTGAGGTCCCAT+AGG 0.581284 2_4:-25009821 None:intergenic
TTGAGTGTGGCTGAACCTAT+GGG 0.597139 2_4:+25009806 Msa0322460:CDS
GTTCAGCTAGGACGCAGAGA+TGG 0.601311 2_4:+25011503 Msa0322460:CDS
CCAAACAGAAATTCAGCTAG+AGG 0.612793 2_4:+25010917 Msa0322460:CDS
TTGTGTCCACAAGATGGAGA+TGG 0.623591 2_4:+25014196 Msa0322460:CDS
AGATAGAATCAAAAGTTCAG+TGG 0.624952 2_4:+25010952 Msa0322460:CDS
CTTATGCTATGATTAAGATG+GGG 0.630250 2_4:+25014413 Msa0322460:CDS
CCTAGCTCGTCCAATAGTGT+GGG 0.634190 2_4:-25014080 None:intergenic
AATAAATGAAGAGATTCGAA+TGG 0.634769 2_4:+25009907 Msa0322460:CDS
TCAGTGGAGAGTTCATGCAG+TGG 0.647754 2_4:+25010968 Msa0322460:CDS
CCCACACTATTGGACGAGCT+AGG 0.650505 2_4:+25014080 Msa0322460:CDS
ATTGGTCTCAAACAAAACAC+TGG 0.668930 2_4:+25011526 Msa0322460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTATTTATTTATATTTT+TGG + chr2_4:25011988-25012007 Msa0322460:intron 0.0%
!!! TTTTTTTATTTTTTTAGGTT+CGG - chr2_4:25011802-25011821 None:intergenic 10.0%
!!! ATTAAAATTTTATAGATCTT+TGG + chr2_4:25012880-25012899 Msa0322460:intron 10.0%
!!! ACTTATTTTCATAAATATTT+TGG + chr2_4:25013844-25013863 Msa0322460:intron 10.0%
!!! TTTATTTAAATAGTCTTTTG+TGG - chr2_4:25010477-25010496 None:intergenic 15.0%
!! AAAATGTTGGATAAATAAAA+AGG - chr2_4:25010830-25010849 None:intergenic 15.0%
!!! TTTTATTTATCCAACATTTT+TGG + chr2_4:25010830-25010849 Msa0322460:intron 15.0%
!!! GTTTTAAAATATTGCAATTT+TGG + chr2_4:25011127-25011146 Msa0322460:intron 15.0%
!!! TATTAAAAAAATCGCAATTT+TGG - chr2_4:25011326-25011345 None:intergenic 15.0%
!!! AAAATTGCGATTTTTTTAAT+AGG + chr2_4:25011325-25011344 Msa0322460:intron 15.0%
!!! AAATTGCGATTTTTTTAATA+GGG + chr2_4:25011326-25011345 Msa0322460:intron 15.0%
!! CAAATAATTTATTTGACTAT+AGG - chr2_4:25011658-25011677 None:intergenic 15.0%
!!! TATCAAAATTTTTACACAAA+AGG - chr2_4:25012344-25012363 None:intergenic 15.0%
!!! TTTGTGTAAAAATTTTGATA+AGG + chr2_4:25012344-25012363 Msa0322460:intron 15.0%
!!! AGTTTCTTTTTTTTTTGTTA+GGG - chr2_4:25012595-25012614 None:intergenic 15.0%
!!! TAGTTTCTTTTTTTTTTGTT+AGG - chr2_4:25012596-25012615 None:intergenic 15.0%
!!! TTTTTCTTTTTAAATCCAAT+AGG + chr2_4:25012912-25012931 Msa0322460:intron 15.0%
!!! GAAAATGAAATATTGATTAA+AGG + chr2_4:25013420-25013439 Msa0322460:intron 15.0%
!!! GAATGAAAGAATTTTTTTTA+TGG + chr2_4:25014384-25014403 Msa0322460:CDS 15.0%
!! TAACTATTGTAAAAAGATCA+GGG - chr2_4:25009868-25009887 None:intergenic 20.0%
!!! TTGTATAGTTTTATTGAAGT+AGG - chr2_4:25010044-25010063 None:intergenic 20.0%
!!! ATCTGAAAGAATTTTTTCTA+TGG + chr2_4:25010516-25010535 Msa0322460:intron 20.0%
!! CCAATGCTTATAAAAAAAAA+AGG - chr2_4:25010770-25010789 None:intergenic 20.0%
!!! CCTTTTTTTTTTATAAGCAT+TGG + chr2_4:25010767-25010786 Msa0322460:intron 20.0%
!!! TTGCCATTTTTTTTAATAGA+GGG - chr2_4:25011153-25011172 None:intergenic 20.0%
!!! AATTGCGATTTTTTTAATAG+GGG + chr2_4:25011327-25011346 Msa0322460:intron 20.0%
!!! TAAAAGAGAGATTTGTTTTA+AGG - chr2_4:25011402-25011421 None:intergenic 20.0%
!! GATAAGTCCAAATATAAAAA+AGG - chr2_4:25012446-25012465 None:intergenic 20.0%
!! TTAGTTTCTATAAGCTATTT+GGG - chr2_4:25012565-25012584 None:intergenic 20.0%
!!! TTGATATTTTGTACAACAAT+TGG - chr2_4:25013204-25013223 None:intergenic 20.0%
!! TACAAAATATCAAATGTTGT+TGG + chr2_4:25013211-25013230 Msa0322460:intron 20.0%
!!! AAAAATGTTTTCTGTTTTTG+TGG + chr2_4:25013392-25013411 Msa0322460:intron 20.0%
!!! ATATTGATTAAAGGAAATGA+AGG + chr2_4:25013429-25013448 Msa0322460:intron 20.0%
!!! AGGTTGGAATTTAATTTTAT+TGG - chr2_4:25013461-25013480 None:intergenic 20.0%
!! TACTTCAAGAATTTACTTAA+TGG + chr2_4:25014271-25014290 Msa0322460:CDS 20.0%
!! AAGAATTTACTTAATGGAAA+AGG + chr2_4:25014277-25014296 Msa0322460:CDS 20.0%
!! TTTCATTCTCACTATAATAT+TGG - chr2_4:25014372-25014391 None:intergenic 20.0%
! AAGTTGTCCTGTAAAAATAT+GGG - chr2_4:25009844-25009863 None:intergenic 25.0%
! CTAACTATTGTAAAAAGATC+AGG - chr2_4:25009869-25009888 None:intergenic 25.0%
! AATAAATGAAGAGATTCGAA+TGG + chr2_4:25009907-25009926 Msa0322460:CDS 25.0%
! TTACATTTACAAAGCAATCA+TGG - chr2_4:25009958-25009977 None:intergenic 25.0%
! CAATAGTGAAAATAGGTTTA+TGG - chr2_4:25010326-25010345 None:intergenic 25.0%
!! CATAAACCTATTTTCACTAT+TGG + chr2_4:25010324-25010343 Msa0322460:intron 25.0%
! ATTGATCCAATAGTGAAAAT+AGG - chr2_4:25010333-25010352 None:intergenic 25.0%
! TCATATCTCATTTGATTCAA+TGG - chr2_4:25010364-25010383 None:intergenic 25.0%
!!! TGAAAGAATTTTTTCTATGG+AGG + chr2_4:25010519-25010538 Msa0322460:intron 25.0%
! CTACTATTTCCTAAATTTGA+GGG + chr2_4:25010581-25010600 Msa0322460:intron 25.0%
!!! AATTTTAGTCCCTCAAATTT+AGG - chr2_4:25010593-25010612 None:intergenic 25.0%
!! TTTTAGTCCTTACAAATGAA+GGG - chr2_4:25010621-25010640 None:intergenic 25.0%
!!! ATTTTAGTCCTTACAAATGA+AGG - chr2_4:25010622-25010641 None:intergenic 25.0%
! TAATTGAACTTGAACATACT+AGG - chr2_4:25011045-25011064 None:intergenic 25.0%
! CTCATGCAAAAATTAAAACA+AGG + chr2_4:25011079-25011098 Msa0322460:intron 25.0%
!!! CTTGCCATTTTTTTTAATAG+AGG - chr2_4:25011154-25011173 None:intergenic 25.0%
! ATCATATTTCCCTTATGTTA+GGG - chr2_4:25011213-25011232 None:intergenic 25.0%
!!! GCAACTTTTTGAGAAAATAA+GGG - chr2_4:25011243-25011262 None:intergenic 25.0%
!!! ATTGCGATTTTTTTAATAGG+GGG + chr2_4:25011328-25011347 Msa0322460:intron 25.0%
!!! GTTTTAAAATGTTGCGATTT+TGG - chr2_4:25011354-25011373 None:intergenic 25.0%
!!! TCGCAACATTTTAAAACTTA+AGG + chr2_4:25011357-25011376 Msa0322460:intron 25.0%
!!! CGCAACATTTTAAAACTTAA+GGG + chr2_4:25011358-25011377 Msa0322460:intron 25.0%
!!! GCAACATTTTAAAACTTAAG+GGG + chr2_4:25011359-25011378 Msa0322460:intron 25.0%
! TGTCAAAAAAGTCACATATT+TGG + chr2_4:25011688-25011707 Msa0322460:intron 25.0%
!! TCTTTAAGAGAATTGTTAAC+CGG - chr2_4:25011940-25011959 None:intergenic 25.0%
!!! GTTATGTTTTGAACATGAAA+TGG + chr2_4:25012015-25012034 Msa0322460:intron 25.0%
!! AATGAGTCAGATTAGTTAAA+AGG + chr2_4:25012061-25012080 Msa0322460:intron 25.0%
!!! TAGATTTTTTCTCTGTAAGT+GGG + chr2_4:25012159-25012178 Msa0322460:intron 25.0%
!!! TATTTTTGGGAGAGTTTATT+TGG + chr2_4:25012260-25012279 Msa0322460:intron 25.0%
! TGCATACAATACATCAAAAA+TGG + chr2_4:25012368-25012387 Msa0322460:intron 25.0%
! CTTAGTTTCTATAAGCTATT+TGG - chr2_4:25012566-25012585 None:intergenic 25.0%
! TTGTAAGATATCTATGAAGT+AGG + chr2_4:25012641-25012660 Msa0322460:intron 25.0%
! TGTAAGATATCTATGAAGTA+GGG + chr2_4:25012642-25012661 Msa0322460:intron 25.0%
! AGCCAATACAATTAAAAAGA+TGG + chr2_4:25013016-25013035 Msa0322460:intron 25.0%
!!! GTCCATCTTTTTAATTGTAT+TGG - chr2_4:25013021-25013040 None:intergenic 25.0%
!! ACAATTAAAAAGATGGACTT+TGG + chr2_4:25013023-25013042 Msa0322460:intron 25.0%
!! ATTTTCTATATTTTCCTTGC+TGG - chr2_4:25013116-25013135 None:intergenic 25.0%
! TTATCACAAAACTAGAAGAT+TGG - chr2_4:25013163-25013182 None:intergenic 25.0%
!!! ACCACAAAACTTTTAAAGAA+CGG - chr2_4:25013252-25013271 None:intergenic 25.0%
! AAATAGTTCGAAATTCGATT+CGG - chr2_4:25013778-25013797 None:intergenic 25.0%
! GTTACAAATACTTCATAGTA+GGG - chr2_4:25013826-25013845 None:intergenic 25.0%
! AGTTACAAATACTTCATAGT+AGG - chr2_4:25013827-25013846 None:intergenic 25.0%
! CTCATATTACATTAAGACAA+AGG + chr2_4:25013982-25014001 Msa0322460:intron 25.0%
! TGGTAAGAAATTCAATTTAG+AGG - chr2_4:25014026-25014045 None:intergenic 25.0%
! TAGCATGCATAAATAGAAAT+TGG - chr2_4:25014046-25014065 None:intergenic 25.0%
!! TATGCATGCTAATTTTCTTT+AGG + chr2_4:25014055-25014074 Msa0322460:intron 25.0%
!!! TCATATTCTAAAGTATTGTC+TGG - chr2_4:25014154-25014173 None:intergenic 25.0%
! CAAATTGATCAATTGAGTAT+GGG - chr2_4:25014243-25014262 None:intergenic 25.0%
! TCAAATTGATCAATTGAGTA+TGG - chr2_4:25014244-25014263 None:intergenic 25.0%
TAAAAATATGGGGTCAATTG+AGG - chr2_4:25009833-25009852 None:intergenic 30.0%
!! AATTGACCCCATATTTTTAC+AGG + chr2_4:25009834-25009853 Msa0322460:CDS 30.0%
AGTTGTCCTGTAAAAATATG+GGG - chr2_4:25009843-25009862 None:intergenic 30.0%
CAAGTTGTCCTGTAAAAATA+TGG - chr2_4:25009845-25009864 None:intergenic 30.0%
TTCAAATCTTATATAGCCGT+AGG + chr2_4:25010094-25010113 Msa0322460:intron 30.0%
TCAAATCTTATATAGCCGTA+GGG + chr2_4:25010095-25010114 Msa0322460:intron 30.0%
TTGTAAATAACATCACCCTA+CGG - chr2_4:25010113-25010132 None:intergenic 30.0%
GGTGCAAAATTTGAGAAAAT+TGG - chr2_4:25010239-25010258 None:intergenic 30.0%
GATGAGACTTATTGATCTAA+TGG + chr2_4:25010382-25010401 Msa0322460:intron 30.0%
GCTACTATTTCCTAAATTTG+AGG + chr2_4:25010580-25010599 Msa0322460:intron 30.0%
AGATAGAATCAAAAGTTCAG+TGG + chr2_4:25010952-25010971 Msa0322460:CDS 30.0%
TGGCCCTCTATTAAAAAAAA+TGG + chr2_4:25011147-25011166 Msa0322460:intron 30.0%
AGCATATTTCCCTAAACATT+GGG - chr2_4:25011182-25011201 None:intergenic 30.0%
TCATATTTCCCTTATGTTAG+GGG - chr2_4:25011212-25011231 None:intergenic 30.0%
GATCATATTTCCCTTATGTT+AGG - chr2_4:25011214-25011233 None:intergenic 30.0%
!! CGCAACTTTTTGAGAAAATA+AGG - chr2_4:25011244-25011263 None:intergenic 30.0%
ATAGTACTTAGTGAGTCAAA+TGG - chr2_4:25011572-25011591 None:intergenic 30.0%
!! ATTTCCAAGTTTGATAACGT+TGG + chr2_4:25011593-25011612 Msa0322460:CDS 30.0%
!! AAAGACGTTGTTACTTTATC+AGG + chr2_4:25011626-25011645 Msa0322460:CDS 30.0%
! TTTTCTTAACTAGTGATTCG+AGG - chr2_4:25011753-25011772 None:intergenic 30.0%
! AGTCAGATTAGTTAAAAGGA+CGG + chr2_4:25012065-25012084 Msa0322460:intron 30.0%
!!! GTAGATTTTTTCTCTGTAAG+TGG + chr2_4:25012158-25012177 Msa0322460:intron 30.0%
!!! AGATTTTTTCTCTGTAAGTG+GGG + chr2_4:25012160-25012179 Msa0322460:intron 30.0%
ATTTGTAAGAGTTTGATTGG+AGG - chr2_4:25012207-25012226 None:intergenic 30.0%
TGGATTTGTAAGAGTTTGAT+TGG - chr2_4:25012210-25012229 None:intergenic 30.0%
! TCCCACTTGAAAGATATTTT+TGG + chr2_4:25012246-25012265 Msa0322460:intron 30.0%
! CCCAAAAATATCTTTCAAGT+GGG - chr2_4:25012250-25012269 None:intergenic 30.0%
! CCCACTTGAAAGATATTTTT+GGG + chr2_4:25012247-25012266 Msa0322460:intron 30.0%
TCCCAAAAATATCTTTCAAG+TGG - chr2_4:25012251-25012270 None:intergenic 30.0%
TTGTCGTGTGATTAAAAGAT+CGG + chr2_4:25012299-25012318 Msa0322460:intron 30.0%
!! TTACACAAAAGGTTGTTTTC+AGG - chr2_4:25012333-25012352 None:intergenic 30.0%
CAAATATAAAAAAGGCAACC+CGG - chr2_4:25012438-25012457 None:intergenic 30.0%
!!! TTTTTAATTGTATTGGCTGC+AGG - chr2_4:25013014-25013033 None:intergenic 30.0%
!! ACCGTTCTTTAAAAGTTTTG+TGG + chr2_4:25013248-25013267 Msa0322460:intron 30.0%
GAGAAAATCATTCTCTATTG+TGG - chr2_4:25013302-25013321 None:intergenic 30.0%
! TAGAGAATGATTTTCTCCTT+TGG + chr2_4:25013305-25013324 Msa0322460:intron 30.0%
!!! GTTTTCTGTTTTTGTGGAAT+TGG + chr2_4:25013398-25013417 Msa0322460:intron 30.0%
GTCAAAAACAAGAAGGAAAA+TGG + chr2_4:25013502-25013521 Msa0322460:intron 30.0%
! CTTAATTTTCAGCTCAAGTT+CGG + chr2_4:25013714-25013733 Msa0322460:intron 30.0%
!!! ATTTCGAACTATTTTCGAGT+TGG + chr2_4:25013784-25013803 Msa0322460:intron 30.0%
GCATAGTTAATTAAGTGCTT+AGG - chr2_4:25013927-25013946 None:intergenic 30.0%
ACATTGACAAAAGAAACGTT+TGG - chr2_4:25013952-25013971 None:intergenic 30.0%
AACAGATTATTCAACTTCTC+CGG + chr2_4:25014118-25014137 Msa0322460:CDS 30.0%
CATCACTTGAAAAGAGAATT+TGG - chr2_4:25014318-25014337 None:intergenic 30.0%
ATATTGGACCAATTGTTTAG+TGG - chr2_4:25014356-25014375 None:intergenic 30.0%
TGCTTATGCTATGATTAAGA+TGG + chr2_4:25014411-25014430 Msa0322460:CDS 30.0%
GCTTATGCTATGATTAAGAT+GGG + chr2_4:25014412-25014431 Msa0322460:CDS 30.0%
CTTATGCTATGATTAAGATG+GGG + chr2_4:25014413-25014432 Msa0322460:CDS 30.0%
GGGAATATAAATCCACTTAT+TGG + chr2_4:25014433-25014452 Msa0322460:CDS 30.0%
! GTAGAGCTATTGCATGTTTT+TGG + chr2_4:25009765-25009784 Msa0322460:CDS 35.0%
!! GAGTTTCTTCATTTTGAGTG+TGG + chr2_4:25009793-25009812 Msa0322460:CDS 35.0%
!! GCACCACAAATTTTAAGAGA+CGG + chr2_4:25010254-25010273 Msa0322460:intron 35.0%
AAGCCGTCTCTTAAAATTTG+TGG - chr2_4:25010260-25010279 None:intergenic 35.0%
!! AAATTTTAAGAGACGGCTTG+AGG + chr2_4:25010261-25010280 Msa0322460:intron 35.0%
CTCACCTATGCACAATAAAT+TGG - chr2_4:25010287-25010306 None:intergenic 35.0%
GTGAAAAACACGCTTATGTA+TGG + chr2_4:25010404-25010423 Msa0322460:intron 35.0%
TTACCAACCCTTCATTTGTA+AGG + chr2_4:25010611-25010630 Msa0322460:intron 35.0%
AACAGAATCTCTAGCAACTA+TGG - chr2_4:25011020-25011039 None:intergenic 35.0%
GAGCATATTTCCCTAAACAT+TGG - chr2_4:25011183-25011202 None:intergenic 35.0%
! TCTTTTGACCCCTAACATAA+GGG + chr2_4:25011201-25011220 Msa0322460:intron 35.0%
!!! TGGCGCTTTTTCAACAATTT+TGG + chr2_4:25011289-25011308 Msa0322460:intron 35.0%
!!! GGCGCTTTTTCAACAATTTT+GGG + chr2_4:25011290-25011309 Msa0322460:intron 35.0%
!!! TTCAACAATTTTGGGACGAA+AGG + chr2_4:25011298-25011317 Msa0322460:intron 35.0%
!!! TCAACAATTTTGGGACGAAA+GGG + chr2_4:25011299-25011318 Msa0322460:intron 35.0%
! TGTGATCACATTTTGTAGAG+TGG + chr2_4:25011464-25011483 Msa0322460:intron 35.0%
! GTGATCACATTTTGTAGAGT+GGG + chr2_4:25011465-25011484 Msa0322460:intron 35.0%
! TGATCACATTTTGTAGAGTG+GGG + chr2_4:25011466-25011485 Msa0322460:intron 35.0%
! ATTGGTCTCAAACAAAACAC+TGG + chr2_4:25011526-25011545 Msa0322460:CDS 35.0%
AAGACCAACGTTATCAAACT+TGG - chr2_4:25011600-25011619 None:intergenic 35.0%
TTTCCTTAACTAGTGTTCAG+TGG + chr2_4:25011911-25011930 Msa0322460:intron 35.0%
! ATGGTAATGTATTTGAGCTG+AGG + chr2_4:25012034-25012053 Msa0322460:intron 35.0%
! TGGTAATGTATTTGAGCTGA+GGG + chr2_4:25012035-25012054 Msa0322460:intron 35.0%
! GTCAGATTAGTTAAAAGGAC+GGG + chr2_4:25012066-25012085 Msa0322460:intron 35.0%
TAAGAGTTTGATTGGAGGAT+GGG - chr2_4:25012202-25012221 None:intergenic 35.0%
! ATGTGGGAGCTTTAATATAC+CGG + chr2_4:25012416-25012435 Msa0322460:intron 35.0%
!!! CGGGTTGCCTTTTTTATATT+TGG + chr2_4:25012436-25012455 Msa0322460:intron 35.0%
! GTTTGAGTTCGCTAACAATT+CGG + chr2_4:25012787-25012806 Msa0322460:intron 35.0%
TTAGCACAAGCTGTGTAAAA+GGG + chr2_4:25012937-25012956 Msa0322460:intron 35.0%
! TTCATGCTCTTTTCTGATCA+GGG - chr2_4:25013068-25013087 None:intergenic 35.0%
! TTTCATGCTCTTTTCTGATC+AGG - chr2_4:25013069-25013088 None:intergenic 35.0%
! ATTTTCCTTGCTGGAGTTTT+TGG - chr2_4:25013107-25013126 None:intergenic 35.0%
CTTCTTCTTCTTCTTCTTCT+CGG - chr2_4:25013367-25013386 None:intergenic 35.0%
AAACAAGAAGGAAAATGGAG+CGG + chr2_4:25013507-25013526 Msa0322460:intron 35.0%
! TATAGATAGTTCGACTCGTT+TGG - chr2_4:25013665-25013684 None:intergenic 35.0%
GGTAATTAATCCGTTGAACT+TGG - chr2_4:25013757-25013776 None:intergenic 35.0%
!!! GAACTATTTTCGAGTTGGTT+CGG + chr2_4:25013789-25013808 Msa0322460:intron 35.0%
CAATTGTTTAGTGGTTGAAG+TGG - chr2_4:25014347-25014366 None:intergenic 35.0%
CACTTCAACCACTAAACAAT+TGG + chr2_4:25014345-25014364 Msa0322460:CDS 35.0%
!! AAATCCACTTATTGGTTCTG+AGG + chr2_4:25014441-25014460 Msa0322460:CDS 35.0%
!! AATCCACTTATTGGTTCTGA+GGG + chr2_4:25014442-25014461 Msa0322460:CDS 35.0%
GAGGCCAATTTATTGTGCAT+AGG + chr2_4:25010280-25010299 Msa0322460:intron 40.0%
AGTCCTTACAAATGAAGGGT+TGG - chr2_4:25010617-25010636 None:intergenic 40.0%
!!! ATCCAACATTTTTGGCTCTC+AGG + chr2_4:25010838-25010857 Msa0322460:intron 40.0%
!!! TCCAACATTTTTGGCTCTCA+GGG + chr2_4:25010839-25010858 Msa0322460:intron 40.0%
CCTCTAGCTGAATTTCTGTT+TGG - chr2_4:25010920-25010939 None:intergenic 40.0%
CCAAACAGAAATTCAGCTAG+AGG + chr2_4:25010917-25010936 Msa0322460:CDS 40.0%
CAAGAGTGACCCAATGTTTA+GGG + chr2_4:25011170-25011189 Msa0322460:intron 40.0%
! CTCTTTTGACCCCTAACATA+AGG + chr2_4:25011200-25011219 Msa0322460:intron 40.0%
!!! TGCGATTATGACCCCTTTTT+TGG + chr2_4:25011260-25011279 Msa0322460:intron 40.0%
! GATCACATTTTGTAGAGTGG+GGG + chr2_4:25011467-25011486 Msa0322460:intron 40.0%
CTTAGTGAGTCAAATGGAGA+AGG - chr2_4:25011566-25011585 None:intergenic 40.0%
TGTCCACTGAACACTAGTTA+AGG - chr2_4:25011917-25011936 None:intergenic 40.0%
GGTAATGTATTTGAGCTGAG+GGG + chr2_4:25012036-25012055 Msa0322460:intron 40.0%
AAGAGTTTGATTGGAGGATG+GGG - chr2_4:25012201-25012220 None:intergenic 40.0%
GTAAGAGTTTGATTGGAGGA+TGG - chr2_4:25012203-25012222 None:intergenic 40.0%
! ATATCTTTCAAGTGGGAGCT+TGG - chr2_4:25012243-25012262 None:intergenic 40.0%
TTAAAGCTCCCACATACGTA+GGG - chr2_4:25012411-25012430 None:intergenic 40.0%
ATTAAAGCTCCCACATACGT+AGG - chr2_4:25012412-25012431 None:intergenic 40.0%
! TGTGGGAGCTTTAATATACC+GGG + chr2_4:25012417-25012436 Msa0322460:intron 40.0%
AGATATCTATGAAGTAGGGC+TGG + chr2_4:25012646-25012665 Msa0322460:intron 40.0%
! ATTTGGTTCAGCTCGAAACT+CGG + chr2_4:25012720-25012739 Msa0322460:intron 40.0%
!!! TTTTTAGCTCGAACTCGACT+CGG + chr2_4:25012765-25012784 Msa0322460:intron 40.0%
AGTTCGCTAACAATTCGGTT+CGG + chr2_4:25012792-25012811 Msa0322460:intron 40.0%
CTTAGCACAAGCTGTGTAAA+AGG + chr2_4:25012936-25012955 Msa0322460:intron 40.0%
! TCATGCTCTTTTCTGATCAG+GGG - chr2_4:25013067-25013086 None:intergenic 40.0%
AAATGCCAAAAACTCCAGCA+AGG + chr2_4:25013099-25013118 Msa0322460:intron 40.0%
TTCTTCTTCTTCTTCTCGGA+TGG - chr2_4:25013363-25013382 None:intergenic 40.0%
AATTCCAACCTCCTAGAGAA+TGG + chr2_4:25013470-25013489 Msa0322460:intron 40.0%
CTGATGCGTCAAAAACAAGA+AGG + chr2_4:25013495-25013514 Msa0322460:intron 40.0%
!! ATTGTCTGGTTCTTGTGTTC+CGG - chr2_4:25014140-25014159 None:intergenic 40.0%
CAAAACTTGTGTCCACAAGA+TGG + chr2_4:25014190-25014209 Msa0322460:CDS 40.0%
AGAGAATTTGGTCAGAGCTA+AGG - chr2_4:25014306-25014325 None:intergenic 40.0%
TTTGAGTGTGGCTGAACCTA+TGG + chr2_4:25009805-25009824 Msa0322460:CDS 45.0%
TTGAGTGTGGCTGAACCTAT+GGG + chr2_4:25009806-25009825 Msa0322460:CDS 45.0%
ACCCTGAGAGCCAAAAATGT+TGG - chr2_4:25010843-25010862 None:intergenic 45.0%
GATGGTTCAGTTCTGCTTGA+TGG + chr2_4:25010866-25010885 Msa0322460:CDS 45.0%
GCAAGAGTGACCCAATGTTT+AGG + chr2_4:25011169-25011188 Msa0322460:intron 45.0%
CCTAGCTGAACGTACCAAAA+AGG - chr2_4:25011494-25011513 None:intergenic 45.0%
!! CCTTTTTGGTACGTTCAGCT+AGG + chr2_4:25011491-25011510 Msa0322460:CDS 45.0%
AACTAGTGTTCAGTGGACAC+CGG + chr2_4:25011918-25011937 Msa0322460:intron 45.0%
TTCTCTGTAAGTGGGGTGAA+AGG + chr2_4:25012167-25012186 Msa0322460:intron 45.0%
TCTCTGTAAGTGGGGTGAAA+GGG + chr2_4:25012168-25012187 Msa0322460:intron 45.0%
TTCCCAAACCCTACGTATGT+GGG + chr2_4:25012400-25012419 Msa0322460:intron 45.0%
! CGACTCGACTCGATAAGATT+TGG + chr2_4:25012703-25012722 Msa0322460:intron 45.0%
CAGCTTGTGCTAAGTCCTAT+TGG - chr2_4:25012930-25012949 None:intergenic 45.0%
TCTGATCAGGGGATTGCATT+AGG - chr2_4:25013056-25013075 None:intergenic 45.0%
CAAGTGGCATAGCTAACCAA+AGG - chr2_4:25013324-25013343 None:intergenic 45.0%
! CAATAGGCGGATTTAGCAAG+TGG - chr2_4:25013340-25013359 None:intergenic 45.0%
TCTTCTTCTCGGATGGCAAT+AGG - chr2_4:25013356-25013375 None:intergenic 45.0%
! AGTTCCATTCTCTAGGAGGT+TGG - chr2_4:25013477-25013496 None:intergenic 45.0%
CATCAGTTCCATTCTCTAGG+AGG - chr2_4:25013481-25013500 None:intergenic 45.0%
ACGCATCAGTTCCATTCTCT+AGG - chr2_4:25013484-25013503 None:intergenic 45.0%
! GACTCGTTTGGTTCATGAGA+TGG - chr2_4:25013653-25013672 None:intergenic 45.0%
GGTTCACGAACCAAGTTCAA+CGG + chr2_4:25013744-25013763 Msa0322460:intron 45.0%
TCTTTAGGTGCCCACACTAT+TGG + chr2_4:25014070-25014089 Msa0322460:intron 45.0%
TTGTGTCCACAAGATGGAGA+TGG + chr2_4:25014196-25014215 Msa0322460:CDS 45.0%
GTGTTACCATCTCCATCTTG+TGG - chr2_4:25014205-25014224 None:intergenic 45.0%
TCTCCCTCAGAACCAATAAG+TGG - chr2_4:25014448-25014467 None:intergenic 45.0%
!! TTGGTTCTGAGGGAGAGATT+AGG + chr2_4:25014452-25014471 Msa0322460:CDS 45.0%
!!! GAATTTTTTTTTATTTTTTT+AGG - chr2_4:25011807-25011826 None:intergenic 5.0%
!! AAAAAAAATTATAAGAATAT+TGG + chr2_4:25013274-25013293 Msa0322460:intron 5.0%
!! TTTGGCTCTCAGGGTTGTGA+TGG + chr2_4:25010848-25010867 Msa0322460:intron 50.0%
TCAGTGGAGAGTTCATGCAG+TGG + chr2_4:25010968-25010987 Msa0322460:CDS 50.0%
!!! GACCCCTTTTTTGGAACACG+TGG + chr2_4:25011269-25011288 Msa0322460:intron 50.0%
CGCCACGTGTTCCAAAAAAG+GGG - chr2_4:25011274-25011293 None:intergenic 50.0%
GCGCCACGTGTTCCAAAAAA+GGG - chr2_4:25011275-25011294 None:intergenic 50.0%
AGCGCCACGTGTTCCAAAAA+AGG - chr2_4:25011276-25011295 None:intergenic 50.0%
! TGTAGAGTGGGGGTCCTTTT+TGG + chr2_4:25011477-25011496 Msa0322460:intron 50.0%
! TCTTTCAAGTGGGAGCTTGG+TGG - chr2_4:25012240-25012259 None:intergenic 50.0%
CTTCCCAAACCCTACGTATG+TGG + chr2_4:25012399-25012418 Msa0322460:intron 50.0%
CTCCCACATACGTAGGGTTT+GGG - chr2_4:25012405-25012424 None:intergenic 50.0%
!! ACAATTCGGTTCGGCTCGTT+AGG + chr2_4:25012801-25012820 Msa0322460:intron 50.0%
TCTTCTCGGATGGCAATAGG+CGG - chr2_4:25013353-25013372 None:intergenic 50.0%
CAGCTCAAGTTCGGCTCATT+TGG + chr2_4:25013723-25013742 Msa0322460:intron 50.0%
CCTAGCTCGTCCAATAGTGT+GGG - chr2_4:25014083-25014102 None:intergenic 50.0%
ACCTAGCTCGTCCAATAGTG+TGG - chr2_4:25014084-25014103 None:intergenic 50.0%
GGGGTCAATTGAGGTCCCAT+AGG - chr2_4:25009824-25009843 None:intergenic 55.0%
GTTCAGCTAGGACGCAGAGA+TGG + chr2_4:25011503-25011522 Msa0322460:CDS 55.0%
GCTAGGACGCAGAGATGGAT+TGG + chr2_4:25011508-25011527 Msa0322460:CDS 55.0%
GCTCCCACATACGTAGGGTT+TGG - chr2_4:25012406-25012425 None:intergenic 55.0%
CCCACACTATTGGACGAGCT+AGG + chr2_4:25014080-25014099 Msa0322460:CDS 55.0%
!! GGGAGCTTGGTGGTGAGCTA+TGG - chr2_4:25012230-25012249 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 25009752 25014501 25009752 ID=Msa0322460;Name=Msa0322460
chr2_4 mRNA 25009752 25014501 25009752 ID=Msa0322460-mRNA-1;Parent=Msa0322460;Name=Msa0322460-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|4|0|332
chr2_4 exon 25009752 25009973 25009752 ID=Msa0322460-mRNA-1:exon:8945;Parent=Msa0322460-mRNA-1
chr2_4 exon 25010860 25011045 25010860 ID=Msa0322460-mRNA-1:exon:8946;Parent=Msa0322460-mRNA-1
chr2_4 exon 25011482 25011647 25011482 ID=Msa0322460-mRNA-1:exon:8947;Parent=Msa0322460-mRNA-1
chr2_4 exon 25014077 25014501 25014077 ID=Msa0322460-mRNA-1:exon:8948;Parent=Msa0322460-mRNA-1
chr2_4 CDS 25009752 25009973 25009752 ID=Msa0322460-mRNA-1:cds;Parent=Msa0322460-mRNA-1
chr2_4 CDS 25010860 25011045 25010860 ID=Msa0322460-mRNA-1:cds;Parent=Msa0322460-mRNA-1
chr2_4 CDS 25011482 25011647 25011482 ID=Msa0322460-mRNA-1:cds;Parent=Msa0322460-mRNA-1
chr2_4 CDS 25014077 25014501 25014077 ID=Msa0322460-mRNA-1:cds;Parent=Msa0322460-mRNA-1
Gene Sequence

>Msa0322460

ATGAATAAATCATGTAGAGCTATTGCATGTTTTTGGCTTATGAGTTTCTTCATTTTGAGTGTGGCTGAACCTATGGGACCTCAATTGACCCCATATTTTTACAGGACAACTTGCCCTGATCTTTTTACAATAGTTAGAAGAGAAGTTCTTAATGCAATAAATGAAGAGATTCGAATGGCAGCTTCTTTGCTTCGTCTTCACTTCCATGATTGCTTTGTAAATGGTTGTGATGGTTCAGTTCTGCTTGATGGAGACGAAGATATTGAGAAATTTGCAACTCCAAACAGAAATTCAGCTAGAGGATTTGAAGTCATAGATAGAATCAAAAGTTCAGTGGAGAGTTCATGCAGTGGAGTTGTGTCTTGTGCTGATATATTAGCCATAGTTGCTAGAGATTCTGTTCACCTAAGTGGGGGTCCTTTTTGGTACGTTCAGCTAGGACGCAGAGATGGATTGGTCTCAAACAAAACACTGGCAAATAATGCAATTCCTTCTCCATTTGACTCACTAAGTACTATCATTTCCAAGTTTGATAACGTTGGTCTTAGTGTTAAAGACGTTGTTACTTTATCAGGTGCCCACACTATTGGACGAGCTAGGTGCACATTTTTTAGCAACAGATTATTCAACTTCTCCGGAACACAAGAACCAGACAATACTTTAGAATATGAAATGCTAACTCAATTGCAAAACTTGTGTCCACAAGATGGAGATGGTAACACAACTACTGTTCTAGACCCATACTCAATTGATCAATTTGATAACAATTACTTCAAGAATTTACTTAATGGAAAAGGTCTCCTTAGCTCTGACCAAATTCTCTTTTCAAGTGATGAAGAAACCACTTCAACCACTAAACAATTGGTCCAATATTATAGTGAGAATGAAAGAATTTTTTTTATGGAATTTGCTTATGCTATGATTAAGATGGGGAATATAAATCCACTTATTGGTTCTGAGGGAGAGATTAGGAAGAGCTGCAGAGTGATTAATTCTTAA

Protein sequence

>Msa0322460

MNKSCRAIACFWLMSFFILSVAEPMGPQLTPYFYRTTCPDLFTIVRREVLNAINEEIRMAASLLRLHFHDCFVNGCDGSVLLDGDEDIEKFATPNRNSARGFEVIDRIKSSVESSCSGVVSCADILAIVARDSVHLSGGPFWYVQLGRRDGLVSNKTLANNAIPSPFDSLSTIISKFDNVGLSVKDVVTLSGAHTIGRARCTFFSNRLFNFSGTQEPDNTLEYEMLTQLQNLCPQDGDGNTTTVLDPYSIDQFDNNYFKNLLNGKGLLSSDQILFSSDEETTSTTKQLVQYYSENERIFFMEFAYAMIKMGNINPLIGSEGEIRKSCRVINS*