AlfalfaGEDB | Msa0245660

M. sativa cultivar zhongmu-4 / Msa0245660

KEGG: K00430
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
PFAM: PF00141.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0245660	ABN09112.1	95.482	332	15	0	1	332	28	359	0.0	659

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0245660	sp\|Q39034\|PER59_ARATH	60.000	320	123	4	13	332	14	328	2.47e-133	385

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0245660	A2Q692	95.482	332	15	0	1	332	28	359	0.0	659

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0245660	-0.814257	1.688929e-51	-8.615850e-47
Msa0001510	Msa0245660	-0.802965	4.367164e-49	-8.615850e-47
Msa0004180	Msa0245660	-0.809555	1.785457e-50	-8.615850e-47
Msa0004940	Msa0245660	0.808082	3.687809e-50	-8.615850e-47
Msa0004990	Msa0245660	0.806514	7.926169e-50	-8.615850e-47
Msa0007120	Msa0245660	0.802554	5.310410e-49	-8.615850e-47
Msa0007570	Msa0245660	-0.808080	3.691773e-50	-8.615850e-47
Msa0008980	Msa0245660	0.831367	1.737679e-55	-8.615850e-47
Msa0010150	Msa0245660	0.804001	2.664061e-49	-8.615850e-47
Msa0011010	Msa0245660	0.818077	2.366435e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0245660	MtrunA17_Chr2g0299691	95.482	332	15	0	1	332	28	359	0.0	659
Msa0245660	MtrunA17_Chr4g0070951	68.944	322	97	2	11	332	12	330	1.79e-159	449
Msa0245660	MtrunA17_Chr1g0175561	55.799	319	135	2	16	331	11	326	2.49e-123	357
Msa0245660	MtrunA17_Chr7g0258811	54.012	324	143	2	11	331	51	371	2.34e-122	356
Msa0245660	MtrunA17_Chr5g0404721	52.941	306	138	2	29	332	30	331	1.10e-108	320
Msa0245660	MtrunA17_Chr8g0372601	52.564	312	142	2	23	332	24	331	1.63e-108	319
Msa0245660	MtrunA17_Chr2g0292211	49.102	334	160	4	4	332	14	342	1.69e-107	318
Msa0245660	MtrunA17_Chr2g0320101	50.920	326	145	5	8	331	5	317	3.04e-105	310
Msa0245660	MtrunA17_Chr2g0291751	52.941	306	139	2	28	331	28	330	5.91e-105	311
Msa0245660	MtrunA17_Chr5g0438021	51.227	326	140	6	10	331	15	325	1.16e-104	309

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0245660	AT5G19890.1	60.000	320	123	4	13	332	14	328	2.51e-134	385
Msa0245660	AT5G06720.1	52.615	325	147	3	11	331	12	333	7.98e-117	341
Msa0245660	AT5G06730.1	51.385	325	151	3	11	331	13	334	2.59e-115	338
Msa0245660	AT4G36430.1	54.072	307	135	2	28	332	29	331	4.70e-115	336
Msa0245660	AT2G18150.1	53.115	305	137	2	29	331	36	336	1.21e-111	328
Msa0245660	AT2G18140.1	52.131	305	140	2	29	331	35	335	6.46e-108	318
Msa0245660	AT5G66390.1	51.803	305	141	2	29	331	33	333	3.26e-106	314
Msa0245660	AT2G38390.1	50.489	307	146	3	28	331	30	333	1.63e-105	313
Msa0245660	AT5G05340.1	52.564	312	130	5	25	331	26	324	1.94e-105	311
Msa0245660	AT3G50990.1	51.148	305	143	2	29	331	41	341	8.92e-105	311

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Find 47 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACGTTGTTACTTTATC+AGG	0.235960	2_2:+25469226	Msa0245660:CDS
AAATCCACTTATTGGTTCTG+AGG	0.528451	2_2:+25470846	Msa0245660:CDS
AACAGAATCTCTAGCAACTA+TGG	0.388400	2_2:-25468617	None:intergenic
AACAGATTATTCAACTTCTC+CGG	0.465572	2_2:+25470523	Msa0245660:CDS
AAGAATTTACTTAATGGAAA+GGG	0.454512	2_2:+25470682	Msa0245660:CDS
AAGACCAACGTTATCAAACT+TGG	0.468625	2_2:-25469197	None:intergenic
AATAAATGAAGAGATTCGAA+TGG	0.634769	2_2:+25467488	Msa0245660:CDS
AATCCACTTATTGGTTCTGA+GGG	0.517484	2_2:+25470847	Msa0245660:CDS
ACCTAGCTCGTCCAATAGTG+TGG	0.565589	2_2:-25470486	None:intergenic
AGATAGAATCAAAAGTTCAG+TGG	0.624952	2_2:+25468552	Msa0245660:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACGTTGTCCTGTAAAAATAT+GGG	-	chr2_2:25467425-25467444	None:intergenic	30.0%
TTCAAATCTTATATAGCCGT+AGG	+	chr2_2:25467675-25467694	Msa0245660:intron	30.0%
TCAAATCTTATATAGCCGTA+GGG	+	chr2_2:25467676-25467695	Msa0245660:intron	30.0%
ATAACATTAACATCACCCTA+CGG	-	chr2_2:25467694-25467713	None:intergenic	30.0%
GGTGCAAAATTTGAGAAAAT+TGG	-	chr2_2:25467835-25467854	None:intergenic	30.0%
GAAGCCAATTTATTGTGTAT+AGG	+	chr2_2:25467883-25467902	Msa0245660:intron	30.0%
CTCACCTATACACAATAAAT+TGG	-	chr2_2:25467890-25467909	None:intergenic	30.0%
AGATATGATGTGACTTCTAT+TGG	+	chr2_2:25467979-25467998	Msa0245660:intron	30.0%
GCTACTATTTCCTAAATTTG+AGG	+	chr2_2:25468177-25468196	Msa0245660:intron	30.0%
AGATAGAATCAAAAGTTCAG+TGG	+	chr2_2:25468552-25468571	Msa0245660:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	25467333	25470906	25467333	ID=Msa0245660;Name=Msa0245660
chr2_2	mRNA	25467333	25470906	25467333	ID=Msa0245660-mRNA-1;Parent=Msa0245660;Name=Msa0245660-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0\|0\|0\|1\|1\|1\|4\|0\|332
chr2_2	exon	25467333	25467554	25467333	ID=Msa0245660-mRNA-1:exon:9596;Parent=Msa0245660-mRNA-1
chr2_2	exon	25468460	25468645	25468460	ID=Msa0245660-mRNA-1:exon:9597;Parent=Msa0245660-mRNA-1
chr2_2	exon	25469082	25469247	25469082	ID=Msa0245660-mRNA-1:exon:9598;Parent=Msa0245660-mRNA-1
chr2_2	exon	25470482	25470906	25470482	ID=Msa0245660-mRNA-1:exon:9599;Parent=Msa0245660-mRNA-1
chr2_2	CDS	25467333	25467554	25467333	ID=Msa0245660-mRNA-1:cds;Parent=Msa0245660-mRNA-1
chr2_2	CDS	25468460	25468645	25468460	ID=Msa0245660-mRNA-1:cds;Parent=Msa0245660-mRNA-1
chr2_2	CDS	25469082	25469247	25469082	ID=Msa0245660-mRNA-1:cds;Parent=Msa0245660-mRNA-1
chr2_2	CDS	25470482	25470906	25470482	ID=Msa0245660-mRNA-1:cds;Parent=Msa0245660-mRNA-1

Gene Sequence

>Msa0245660

ATGAATAAATCATGTAGAGCTACTGCATGTTTTTGGCTTATGAGTTTCTTCATTTTGAGTGTGGCTGAACCTATGAGACCTCGATTGACCCCATATTTTTACAGGACAACGTGCCCTGATCTTTTTACAATAGTTAGAAGAGAGGTTCTTAATGCAATAAATGAAGAGATTCGAATGGCTGCTTCTTTGCTTCGTCTTCACTTCCATGATTGCTTTGTAAATGGTTGTGATGGTTCAATTCTGCTTGATGGAGACGAAGATATTGAGAAATTTGCAACTCCAAACAGAAATTCAGCTAGAGGATTTGAAGTCATAGATAGAATCAAAAGTTCAGTGGAGAGTTCATGCAGTGGAGTTGTGTCTTGTGCTGATATATTAGCCATAGTTGCTAGAGATTCTGTTCACCTAAGTGGGGGTCCTTTTTGGTACGTTCAGCTAGGACGCAGAGATGGATTGGTCTCAAACAAAACACAGGCAAATAATGCAATTCCTTCTCCATTTGACTCACTAAGTACTATCATTTCCAAGTTTGATAACGTTGGTCTTAGTGTTAAAGACGTTGTTACTTTATCAGGTGCCCACACTATTGGACGAGCTAGGTGCACATTTTTTAGCAACAGATTATTCAACTTCTCCGGAACACAAGAACCAGACAATACTTTAGAATATGAAATGCTAACTCAATTGCAAAACTTGTGTCCACAAGATGGAGATGGTAACACAACTACTGTTCTAGACCCATACTCAATTGATCAATTTGATAACAATTACTTCAAGAATTTACTTAATGGAAAGGGTCTACTTAGCTCTGACCAAATTCTCTTTTCAAGTGATGAAGAATTCACTTCAACCACTAAACAATTGGTCCAATATTATAGTGAGAATGAAAGATTTTTTTTTATGGAATTTGCCTATGCTATGATTAAGATGGGGAATATAAATCCACTTATTGGTTCTGAGGGAGAGATTAGGAAGAGCTGTAGAGTGATTAATTCTTAA

Protein sequence

>Msa0245660

MNKSCRATACFWLMSFFILSVAEPMRPRLTPYFYRTTCPDLFTIVRREVLNAINEEIRMAASLLRLHFHDCFVNGCDGSILLDGDEDIEKFATPNRNSARGFEVIDRIKSSVESSCSGVVSCADILAIVARDSVHLSGGPFWYVQLGRRDGLVSNKTQANNAIPSPFDSLSTIISKFDNVGLSVKDVVTLSGAHTIGRARCTFFSNRLFNFSGTQEPDNTLEYEMLTQLQNLCPQDGDGNTTTVLDPYSIDQFDNNYFKNLLNGKGLLSSDQILFSSDEEFTSTTKQLVQYYSENERFFFMEFAYAMIKMGNINPLIGSEGEIRKSCRVINS*