AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0857110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0857110 MtrunA17_Chr5g0435721 96.164 391 13 1 1 389 92 482 0.0 767
Msa0857110 MtrunA17_Chr3g0112291 66.750 400 102 9 1 388 1 381 0.0 507
Msa0857110 MtrunA17_Chr1g0158781 52.921 291 107 6 100 383 113 380 7.68e-83 258
Msa0857110 MtrunA17_Chr4g0070871 46.624 311 130 7 98 383 205 504 7.63e-81 256
Msa0857110 MtrunA17_Chr3g0135961 44.444 333 131 6 95 387 226 544 2.10e-79 254
Msa0857110 MtrunA17_Chr2g0299981 43.769 329 142 8 97 388 218 540 4.61e-78 250
Msa0857110 MtrunA17_Chr1g0150781 44.377 329 132 8 97 389 237 550 4.70e-78 250
Msa0857110 MtrunA17_Chr8g0389921 42.061 359 152 6 59 388 109 440 3.94e-77 245
Msa0857110 MtrunA17_Chr5g0396731 49.597 248 108 4 94 333 67 305 1.11e-74 236
Msa0857110 MtrunA17_Chr3g0126511 37.370 289 142 5 101 388 96 346 2.65e-48 167
Msa0857110 MtrunA17_Chr1g0212961 38.078 281 133 5 100 380 96 335 7.86e-47 163
Msa0857110 MtrunA17_Chr1g0150451 37.722 281 138 4 100 380 78 321 4.90e-46 160
Msa0857110 MtrunA17_Chr3g0136711 36.934 287 144 4 100 386 35 284 1.07e-45 159
Msa0857110 MtrunA17_Chr3g0105371 32.639 288 154 7 101 383 87 339 5.43e-41 147
Msa0857110 MtrunA17_Chr5g0430481 34.014 294 158 6 92 383 116 375 7.10e-40 145
Msa0857110 MtrunA17_Chr3g0105351 32.639 288 154 8 101 383 63 315 2.86e-39 142
Msa0857110 MtrunA17_Chr4g0001761 35.231 281 135 7 99 337 23 298 1.24e-38 142
Msa0857110 MtrunA17_Chr3g0136811 34.182 275 132 8 99 329 23 292 4.45e-38 140
Msa0857110 MtrunA17_Chr1g0150071 33.808 281 139 7 99 337 23 298 5.21e-38 140
Msa0857110 MtrunA17_Chr1g0171571 32.292 288 161 8 100 383 388 645 9.00e-33 129
Msa0857110 MtrunA17_Chr5g0407161 31.215 362 192 14 44 385 24 348 2.17e-32 125
Msa0857110 MtrunA17_Chr8g0360351 34.495 287 140 9 100 380 35 279 6.61e-32 122
Msa0857110 MtrunA17_Chr4g0050381 31.507 292 150 9 99 383 29 277 2.53e-30 117
Msa0857110 MtrunA17_Chr3g0138281 32.534 292 141 11 107 380 90 343 6.56e-30 118
Msa0857110 MtrunA17_Chr5g0426141 32.997 297 149 9 94 383 29 282 8.06e-30 116
Msa0857110 MtrunA17_Chr2g0317021 33.218 289 147 9 100 383 86 333 1.11e-28 114
Msa0857110 MtrunA17_Chr3g0115851 33.333 294 150 9 95 383 30 282 3.09e-28 112
Msa0857110 MtrunA17_Chr2g0279151 31.741 293 156 9 95 383 29 281 9.23e-28 110
Msa0857110 MtrunA17_Chr4g0065141 26.645 304 161 8 86 380 98 348 2.47e-26 108
Msa0857110 MtrunA17_Chr4g0051661 32.328 232 130 6 112 337 165 375 8.81e-26 107
Msa0857110 MtrunA17_Chr2g0293811 29.699 266 136 9 130 380 100 329 1.25e-25 106
Msa0857110 MtrunA17_Chr1g0194191 27.687 307 163 9 97 380 77 347 4.28e-25 105
Msa0857110 MtrunA17_Chr2g0295401 29.603 277 167 9 77 326 38 313 2.31e-24 102
Msa0857110 MtrunA17_Chr1g0151781 32.432 259 124 10 107 328 46 290 8.79e-24 100
Msa0857110 MtrunA17_Chr4g0067711 30.216 278 164 10 77 326 37 312 1.50e-23 100
Msa0857110 MtrunA17_Chr3g0144111 31.907 257 111 8 130 380 27 225 1.60e-23 98.6
Msa0857110 MtrunA17_Chr4g0004971 32.645 242 134 8 107 319 55 296 3.29e-23 99.8
Msa0857110 MtrunA17_Chr1g0192421 31.008 258 127 8 107 326 66 310 1.50e-22 97.8
Msa0857110 MtrunA17_Chr6g0483411 31.718 227 120 7 131 337 80 291 1.60e-22 97.1
Msa0857110 MtrunA17_Chr7g0272061 28.188 298 153 9 77 326 37 321 8.43e-22 95.9
Msa0857110 MtrunA17_Chr2g0324061 31.481 270 121 9 107 326 68 323 1.33e-21 96.3
Msa0857110 MtrunA17_Chr7g0243571 28.996 269 129 8 107 326 69 324 2.63e-21 95.1
Msa0857110 MtrunA17_Chr7g0249421 31.250 272 135 9 107 326 73 344 2.70e-21 95.5
Msa0857110 MtrunA17_Chr3g0127091 23.926 326 170 9 99 382 60 349 2.08e-20 92.0
Msa0857110 MtrunA17_Chr1g0213351 29.362 235 121 7 130 329 80 304 9.48e-20 90.1
Msa0857110 MtrunA17_Chr7g0221691 28.938 273 132 9 107 326 106 369 1.06e-19 90.5
Msa0857110 MtrunA17_Chr4g0022171 29.520 271 126 9 107 326 74 330 1.14e-19 90.5
Msa0857110 MtrunA17_Chr7g0263281 27.586 232 129 5 127 326 68 292 6.17e-19 87.4
Msa0857110 MtrunA17_Chr1g0185141 31.140 228 92 7 205 382 226 438 1.78e-18 87.8
Msa0857110 MtrunA17_Chr6g0486661 28.235 255 130 9 110 326 104 343 4.38e-18 86.7
Msa0857110 MtrunA17_Chr1g0207571 25.087 287 171 6 130 382 61 337 6.32e-18 84.7
Msa0857110 MtrunA17_Chr3g0089711 27.615 239 116 9 130 327 68 290 1.66e-17 83.2
Msa0857110 MtrunA17_Chr1g0211251 27.542 236 120 5 130 327 81 303 2.06e-17 83.2
Msa0857110 MtrunA17_Chr3g0089721 27.197 239 117 9 130 327 68 290 6.91e-17 81.3
Msa0857110 MtrunA17_Chr8g0342431 29.268 287 134 11 102 326 55 334 9.75e-17 81.3
Msa0857110 MtrunA17_Chr8g0371321 28.033 239 115 5 130 327 79 301 2.11e-16 80.1
Msa0857110 MtrunA17_Chr4g0066371 24.927 341 179 13 85 383 36 341 4.30e-16 79.3
Msa0857110 MtrunA17_Chr1g0181901 26.724 232 131 5 127 326 73 297 5.62e-16 79.0
Msa0857110 MtrunA17_Chr7g0256751 27.273 253 136 9 110 327 52 291 2.04e-15 77.4
Msa0857110 MtrunA17_Chr1g0209451 28.378 222 130 8 131 336 69 277 7.70e-15 75.9
Msa0857110 MtrunA17_Chr7g0271971 28.194 227 124 8 131 336 69 277 4.64e-14 73.2
Msa0857110 MtrunA17_Chr2g0286951 26.172 256 134 9 110 329 67 303 1.46e-13 71.6
Msa0857110 MtrunA17_Chr1g0192471 27.313 227 126 8 131 336 69 277 6.07e-13 69.7
Msa0857110 MtrunA17_Chr7g0256771 27.468 233 124 10 130 327 70 292 6.70e-13 68.9
Msa0857110 MtrunA17_Chr1g0175381 25.847 236 123 8 130 327 79 300 7.02e-13 69.3
Msa0857110 MtrunA17_Chr3g0089691 30.337 178 75 7 190 327 36 204 2.47e-12 67.0
Msa0857110 MtrunA17_Chr7g0238501 23.934 305 183 8 118 382 251 546 8.58e-12 66.6
Msa0857110 MtrunA17_Chr2g0295991 27.434 226 121 7 199 387 262 481 4.09e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0857110 AT1G07430.1 60.623 353 107 5 69 389 88 440 5.38e-143 414
Msa0857110 AT3G11410.1 60.096 416 119 10 1 389 1 396 4.87e-140 405
Msa0857110 AT2G29380.1 67.224 299 84 4 93 384 71 362 5.62e-140 403
Msa0857110 AT5G59220.1 61.891 349 104 7 62 385 68 412 5.09e-121 357
Msa0857110 AT5G59220.2 61.803 233 71 6 62 280 68 296 4.18e-89 271
Msa0857110 AT4G26080.1 47.604 313 121 4 98 383 127 423 8.45e-88 273
Msa0857110 AT5G51760.2 47.634 317 124 6 98 383 77 382 1.71e-87 270
Msa0857110 AT5G57050.2 47.022 319 125 4 95 383 68 372 2.20e-87 270
Msa0857110 AT5G57050.1 47.022 319 125 4 95 383 108 412 3.56e-87 270
Msa0857110 AT5G51760.1 47.634 317 124 6 98 383 107 412 5.43e-87 270
Msa0857110 AT1G72770.4 44.345 336 150 4 85 387 175 506 9.66e-85 267
Msa0857110 AT1G72770.1 44.345 336 150 4 85 387 175 506 9.66e-85 267
Msa0857110 AT1G72770.3 44.345 336 150 4 85 387 175 506 9.66e-85 267
Msa0857110 AT1G17550.1 44.315 343 152 6 80 387 168 506 2.19e-81 258
Msa0857110 AT1G17550.2 44.315 343 152 6 80 387 168 506 2.19e-81 258
Msa0857110 AT5G57050.3 48.387 217 70 4 95 284 108 309 1.03e-56 188
Msa0857110 AT1G72770.2 42.731 227 99 2 85 280 175 401 2.84e-48 169
Msa0857110 AT1G72770.5 42.731 227 99 2 85 280 175 401 2.84e-48 169
Msa0857110 AT1G67820.2 40.496 242 118 4 100 335 85 306 1.73e-46 164
Msa0857110 AT5G24940.1 37.011 281 140 4 100 380 34 277 1.80e-46 165
Msa0857110 AT1G67820.1 40.586 239 122 3 100 335 121 342 3.40e-46 164
Msa0857110 AT5G10740.1 36.299 281 142 4 100 380 34 277 7.71e-46 161
Msa0857110 AT5G10740.2 36.299 281 142 4 100 380 34 277 7.71e-46 161
Msa0857110 AT1G43900.1 37.722 281 137 5 100 380 124 366 3.76e-45 160
Msa0857110 AT5G53140.1 37.024 289 143 6 101 388 103 353 4.21e-45 160
Msa0857110 AT5G53140.2 37.024 289 143 6 101 388 103 353 4.21e-45 160
Msa0857110 AT4G31750.1 35.889 287 147 5 100 386 34 283 8.54e-44 154
Msa0857110 AT4G31750.3 35.889 287 147 5 100 386 34 283 8.54e-44 154
Msa0857110 AT4G31750.2 35.889 287 147 5 100 386 34 283 9.17e-44 154
Msa0857110 AT2G30020.1 34.256 289 152 6 100 384 140 394 8.98e-41 149
Msa0857110 AT1G07160.1 33.003 303 148 9 93 382 116 376 2.86e-38 142
Msa0857110 AT2G40180.1 32.803 314 167 7 79 383 108 386 3.18e-37 139
Msa0857110 AT4G31860.3 35.385 260 119 8 99 315 23 276 3.84e-35 131
Msa0857110 AT4G31860.1 33.333 282 139 8 99 337 23 298 4.84e-35 132
Msa0857110 AT4G31860.2 35.135 259 119 8 99 314 23 275 1.61e-34 129
Msa0857110 AT2G40860.4 33.754 317 158 12 73 383 281 551 1.55e-33 131
Msa0857110 AT2G40860.1 33.754 317 158 12 73 383 379 649 2.23e-33 132
Msa0857110 AT2G25070.1 31.206 282 145 8 99 337 23 298 4.36e-33 127
Msa0857110 AT2G25070.2 31.206 282 145 8 99 337 23 298 4.36e-33 127
Msa0857110 AT3G15260.2 33.904 292 141 10 100 383 42 289 2.16e-32 124
Msa0857110 AT3G15260.1 33.904 292 141 10 100 383 42 289 2.16e-32 124
Msa0857110 AT3G51470.2 33.922 283 141 10 107 380 36 281 4.60e-32 123
Msa0857110 AT3G51470.1 33.569 283 142 9 107 380 80 325 8.71e-32 124
Msa0857110 AT2G40860.2 34.340 265 144 9 73 331 379 619 5.85e-31 125
Msa0857110 AT2G25620.1 29.839 372 200 13 35 383 24 357 7.89e-31 122
Msa0857110 AT2G25620.2 29.839 372 200 13 35 383 24 357 7.89e-31 122
Msa0857110 AT1G22280.3 33.333 303 146 12 94 383 28 287 5.99e-30 117
Msa0857110 AT1G48040.1 32.246 276 151 9 114 380 99 347 8.53e-30 119
Msa0857110 AT4G32950.1 32.959 267 143 9 80 326 26 276 1.01e-29 117
Msa0857110 AT1G22280.1 33.221 298 147 11 94 383 28 281 2.65e-29 115
Msa0857110 AT3G16800.2 32.180 289 146 13 74 327 36 309 1.28e-28 115
Msa0857110 AT3G16800.1 32.180 289 146 13 74 327 36 309 1.28e-28 115
Msa0857110 AT3G16800.3 32.180 289 146 13 74 327 36 309 1.28e-28 115
Msa0857110 AT1G78200.1 30.375 293 163 8 95 383 28 283 4.62e-28 112
Msa0857110 AT1G78200.3 30.375 293 163 8 95 383 28 283 4.62e-28 112
Msa0857110 AT1G78200.2 30.375 293 163 8 95 383 28 283 4.62e-28 112
Msa0857110 AT2G33700.1 32.296 257 131 7 130 380 123 342 1.15e-27 112
Msa0857110 AT3G17250.1 30.325 277 124 7 130 380 158 391 5.01e-27 111
Msa0857110 AT3G62260.2 31.379 290 155 10 107 380 86 347 2.44e-26 109
Msa0857110 AT3G62260.1 31.379 290 155 10 107 380 85 346 2.58e-26 109
Msa0857110 AT3G62260.3 32.103 271 148 9 118 380 15 257 3.40e-26 107
Msa0857110 AT1G78200.5 31.128 257 137 6 130 383 19 238 4.29e-26 105
Msa0857110 AT1G78200.4 31.128 257 137 6 130 383 19 238 4.29e-26 105
Msa0857110 AT2G34740.1 30.935 278 141 8 112 382 101 334 1.00e-25 106
Msa0857110 AT4G32950.2 31.907 257 139 9 77 313 23 263 3.24e-25 103
Msa0857110 AT4G28400.3 30.208 288 157 9 100 383 14 261 7.16e-25 102
Msa0857110 AT4G28400.1 29.514 288 159 8 100 383 36 283 8.47e-25 103
Msa0857110 AT1G34750.2 30.796 289 156 8 99 383 34 282 1.23e-24 102
Msa0857110 AT1G34750.1 30.796 289 156 8 99 383 34 282 1.23e-24 102
Msa0857110 AT1G34750.3 30.796 289 156 8 99 383 34 282 1.23e-24 102
Msa0857110 AT5G26010.1 29.371 286 156 10 72 326 13 283 2.14e-24 102
Msa0857110 AT3G05640.2 30.293 307 168 11 55 326 14 309 3.24e-24 102
Msa0857110 AT3G05640.1 30.293 307 168 11 55 326 14 309 3.24e-24 102
Msa0857110 AT3G05640.3 30.293 307 168 11 55 326 14 309 3.24e-24 102
Msa0857110 AT5G27930.1 29.355 310 161 9 62 326 18 314 5.02e-24 102
Msa0857110 AT5G27930.2 29.355 310 161 9 62 326 18 314 5.02e-24 102
Msa0857110 AT2G20630.1 29.183 257 139 7 130 383 63 279 8.83e-24 100
Msa0857110 AT2G40860.3 34.025 241 129 9 73 307 379 595 1.25e-23 103
Msa0857110 AT2G20630.2 32.836 201 115 5 130 327 63 246 4.04e-23 98.6
Msa0857110 AT3G16800.4 36.667 180 84 7 165 327 48 214 8.62e-23 97.1
Msa0857110 AT3G16800.6 36.667 180 84 7 165 327 48 214 8.62e-23 97.1
Msa0857110 AT4G28400.2 32.579 221 128 6 100 316 36 239 1.56e-22 95.9
Msa0857110 AT2G34740.3 33.014 209 118 6 112 316 97 287 2.26e-22 96.7
Msa0857110 AT2G34740.2 33.014 209 118 6 112 316 115 305 3.39e-22 96.7
Msa0857110 AT4G03415.1 31.047 277 125 9 102 326 70 332 1.08e-21 97.1
Msa0857110 AT4G03415.3 31.047 277 125 9 102 326 70 332 1.08e-21 97.1
Msa0857110 AT4G03415.2 31.047 277 125 9 102 326 70 332 1.08e-21 97.1
Msa0857110 AT1G18030.1 32.579 221 114 8 131 331 110 315 1.27e-21 95.5
Msa0857110 AT2G20050.1 28.794 257 123 9 110 326 123 359 3.01e-21 96.7
Msa0857110 AT2G20050.2 28.794 257 123 9 110 326 123 359 3.06e-21 96.7
Msa0857110 AT1G34750.4 32.314 229 132 7 99 323 34 243 3.65e-21 92.0
Msa0857110 AT4G08260.1 28.832 274 130 9 112 384 1 210 1.21e-20 89.7
Msa0857110 AT1G16220.1 29.889 271 133 7 107 326 72 336 2.25e-20 93.2
Msa0857110 AT1G79630.1 29.825 285 135 8 107 326 75 359 2.86e-20 92.8
Msa0857110 AT5G01700.1 32.129 249 140 11 107 329 6 251 3.09e-20 91.3
Msa0857110 AT1G79630.8 29.825 285 135 8 107 326 71 355 4.21e-20 92.4
Msa0857110 AT1G03590.1 30.483 269 124 8 107 326 68 322 4.23e-20 92.0
Msa0857110 AT1G18030.2 32.524 206 104 8 131 316 110 300 6.31e-20 89.7
Msa0857110 AT3G06270.1 26.198 313 157 11 110 384 68 344 8.02e-20 90.1
Msa0857110 AT5G01700.2 32.129 249 140 11 107 329 55 300 8.52e-20 90.5
Msa0857110 AT3G02750.2 34.197 193 94 7 154 326 174 353 3.27e-19 89.7
Msa0857110 AT3G02750.1 34.197 193 94 7 154 326 174 353 3.27e-19 89.7
Msa0857110 AT3G12620.2 27.755 245 132 7 120 329 73 307 3.80e-19 88.6
Msa0857110 AT3G12620.1 27.755 245 132 7 120 329 73 307 3.80e-19 88.6
Msa0857110 AT3G55050.1 27.333 300 148 11 130 383 84 359 4.63e-19 88.6
Msa0857110 AT3G55050.2 27.333 300 148 11 130 383 84 359 4.63e-19 88.6
Msa0857110 AT5G27930.3 28.620 297 154 9 62 313 18 301 6.24e-19 87.4
Msa0857110 AT4G27800.1 25.767 326 168 9 99 384 59 350 1.60e-18 87.0
Msa0857110 AT1G79630.6 36.723 177 83 6 166 326 86 249 1.80e-18 86.7
Msa0857110 AT1G79630.3 36.723 177 83 6 166 326 86 249 1.80e-18 86.7
Msa0857110 AT1G79630.4 36.723 177 83 6 166 326 86 249 1.80e-18 86.7
Msa0857110 AT1G79630.5 36.723 177 83 6 166 326 86 249 1.80e-18 86.7
Msa0857110 AT1G79630.2 36.723 177 83 6 166 326 126 289 2.35e-18 86.7
Msa0857110 AT1G79630.7 36.723 177 83 6 166 326 126 289 2.35e-18 86.7
Msa0857110 AT5G36250.1 27.273 275 150 7 102 326 70 344 2.84e-18 86.7
Msa0857110 AT5G02760.1 30.672 238 114 9 127 327 69 292 3.02e-18 85.9
Msa0857110 AT4G33920.1 25.484 310 182 8 112 386 47 342 6.21e-18 85.1
Msa0857110 AT3G17090.1 27.083 288 168 8 130 385 84 361 8.17e-18 84.7
Msa0857110 AT3G27140.1 28.205 273 111 9 112 383 1 189 1.62e-17 81.6
Msa0857110 AT5G66080.1 28.428 299 144 12 130 382 82 356 2.93e-17 83.2
Msa0857110 AT4G38520.2 27.615 239 116 6 130 327 81 303 8.98e-17 81.6
Msa0857110 AT4G38520.1 27.615 239 116 6 130 327 81 303 8.98e-17 81.6
Msa0857110 AT3G51370.1 26.599 297 160 11 130 386 79 357 4.94e-16 79.3
Msa0857110 AT3G51370.3 26.599 297 160 11 130 386 79 357 4.94e-16 79.3
Msa0857110 AT1G09160.2 29.279 222 128 8 131 336 69 277 9.50e-16 79.0
Msa0857110 AT1G09160.1 29.279 222 128 8 131 336 69 277 9.50e-16 79.0
Msa0857110 AT4G27800.3 25.540 278 152 7 99 336 59 321 9.67e-15 75.1
Msa0857110 AT4G27800.2 25.540 278 152 7 99 336 59 321 9.77e-15 75.1
Msa0857110 AT3G16560.1 27.490 251 129 8 170 387 255 485 2.04e-14 75.1
Msa0857110 AT3G16560.4 27.490 251 129 8 170 387 255 485 2.04e-14 75.1
Msa0857110 AT3G16560.2 27.490 251 129 8 170 387 255 485 2.04e-14 75.1
Msa0857110 AT4G33920.2 26.378 254 142 7 168 386 16 259 2.11e-14 73.6
Msa0857110 AT4G33920.3 26.906 223 125 5 199 386 10 229 7.34e-14 71.6
Msa0857110 AT5G66080.2 31.737 167 70 4 199 327 40 200 1.06e-13 71.2
Msa0857110 AT5G06750.3 27.350 234 126 8 130 327 82 307 2.37e-13 71.2
Msa0857110 AT5G06750.1 27.350 234 126 8 130 327 82 307 2.37e-13 71.2
Msa0857110 AT3G63340.6 28.448 232 107 7 205 389 233 452 2.45e-13 72.4
Msa0857110 AT3G63340.3 28.448 232 107 7 205 389 233 452 2.45e-13 72.4
Msa0857110 AT3G63340.10 28.448 232 107 7 205 389 233 452 2.45e-13 72.4
Msa0857110 AT3G63340.4 28.448 232 107 7 205 389 233 452 2.45e-13 72.4
Msa0857110 AT3G63340.8 28.448 232 107 7 205 389 233 452 2.57e-13 72.4
Msa0857110 AT3G63340.5 28.448 232 107 7 205 389 233 452 2.81e-13 72.0
Msa0857110 AT3G63340.1 28.448 232 107 7 205 389 233 452 2.81e-13 72.0
Msa0857110 AT1G68410.4 27.477 222 132 8 131 336 74 282 2.92e-13 71.2
Msa0857110 AT1G68410.3 27.477 222 132 8 131 336 74 282 2.92e-13 71.2
Msa0857110 AT1G68410.1 27.477 222 132 8 131 336 74 282 2.92e-13 71.2
Msa0857110 AT1G68410.2 27.477 222 132 8 131 336 74 282 2.92e-13 71.2
Msa0857110 AT3G63340.11 28.448 232 107 7 205 389 233 452 2.95e-13 72.0
Msa0857110 AT3G63340.7 28.448 232 107 7 205 389 233 452 2.97e-13 72.0
Msa0857110 AT3G63340.12 28.448 232 107 7 205 389 233 452 3.39e-13 71.2
Msa0857110 AT3G51370.2 28.947 228 111 9 199 386 56 272 5.10e-13 69.7
Msa0857110 AT1G22280.2 32.911 158 81 7 94 245 28 166 5.44e-13 67.8
Msa0857110 AT2G05050.1 34.921 126 60 4 260 384 87 191 9.21e-13 67.0
Msa0857110 AT5G19280.1 27.211 294 162 9 107 382 318 577 1.32e-11 66.6
Msa0857110 AT1G47380.1 27.670 206 121 8 131 322 65 256 4.33e-11 64.7
Msa0857110 AT3G63340.2 32.704 159 91 5 235 389 339 485 9.48e-11 64.3

Find 131 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGATGTTATTCCATATTT+TGG 0.103023 5_4:-52402690 None:intergenic
TAACAATTAATAATAGTAAT+AGG 0.207176 5_4:+52404228 Msa0857110:exon
GATCTAGCTTCTGTCGTTTC+CGG 0.236639 5_4:-52402536 None:intergenic
GGTGACTCCGCCGGGGTCTC+CGG 0.273090 5_4:+52404065 Msa0857110:CDS
CTGGAGGACGTGTGATCTAT+TGG 0.287230 5_4:+52403352 Msa0857110:CDS
GAAGAATGTTCTCCAAAATA+TGG 0.293854 5_4:+52402678 Msa0857110:CDS
TACTTGCCAGTGATGGCTTA+TGG 0.299379 5_4:+52403980 Msa0857110:CDS
ACCTTCCGGTCGCCGGAGTT+TGG 0.312597 5_4:+52402470 Msa0857110:CDS
CAATCAATTGAAATGGTGTT+TGG 0.324836 5_4:-52402297 None:intergenic
TAGGGATTGATTAATGGAAT+TGG 0.330985 5_4:+52404247 Msa0857110:three_prime_UTR
TAGTAATAGGGATTGATTAA+TGG 0.332759 5_4:+52404241 Msa0857110:three_prime_UTR
TTGGCAAAGTGGGAGGAAAA+TGG 0.340528 5_4:+52404351 Msa0857110:three_prime_UTR
CGTATAAAGAAGACATATAT+TGG 0.341290 5_4:+52404547 Msa0857110:three_prime_UTR
CTTGAAGCCATATGTTATAT+CGG 0.354940 5_4:+52403909 Msa0857110:CDS
GAGGAATGGCAACGCCGTTC+CGG 0.355461 5_4:-52403187 None:intergenic
TTTCCCGCCACTTCACTTCC+CGG 0.368693 5_4:-52404084 None:intergenic
AACAATTAATAATAGTAATA+GGG 0.379877 5_4:+52404229 Msa0857110:exon
TCCTCTTTCCACCGATCATA+AGG 0.382314 5_4:+52403205 Msa0857110:CDS
AAGAAGACATATATTGGCTT+TGG 0.383889 5_4:+52404553 Msa0857110:three_prime_UTR
CTTATGACGTGCACTGTGTC+TGG 0.387925 5_4:+52404302 Msa0857110:three_prime_UTR
GGAAGTGAAGTGGCGGGAAA+AGG 0.392404 5_4:+52404087 Msa0857110:CDS
TGTATCTTGTGGGAAACAAT+TGG 0.400205 5_4:+52404451 Msa0857110:three_prime_UTR
GCGTGGTGGTTGTTGATTTG+AGG 0.416094 5_4:+52404187 Msa0857110:CDS
GGTCGTGAGCTTGGTTCAAC+TGG 0.425928 5_4:-52402450 None:intergenic
GAGAGAAAGAGAAGGTTGAC+TGG 0.429160 5_4:+52402967 Msa0857110:CDS
TCTCAACATAGACCAAAGTA+TGG 0.430434 5_4:-52404590 None:intergenic
GAACCAAGCTCACGACCTTC+CGG 0.434793 5_4:+52402456 Msa0857110:CDS
TGAAACACAATCAATTGAAA+TGG 0.436412 5_4:-52402304 None:intergenic
ACTTGCCAGTGATGGCTTAT+GGG 0.436514 5_4:+52403981 Msa0857110:CDS
TTGTGGAAGGAGAAAAGAAA+TGG 0.439029 5_4:+52402713 Msa0857110:CDS
CTCGTCACTCCTCTCCGTTA+TGG 0.440591 5_4:-52403944 None:intergenic
TCGCATTCTCGCGGTGGCGG+TGG 0.445323 5_4:-52402570 None:intergenic
AGGGTCAGATAAGGCGTGTT+CGG 0.445363 5_4:+52404107 Msa0857110:CDS
GTGACTCCGCCGGGGTCTCC+GGG 0.447048 5_4:+52404066 Msa0857110:CDS
ATTCACGAGCCGTTCTTTGC+CGG 0.448686 5_4:+52403168 Msa0857110:CDS
GCCATATGTTATATCGGAAC+CGG 0.452791 5_4:+52403915 Msa0857110:CDS
TTCGGTGTTTACGACGGTCA+TGG 0.452798 5_4:+52402789 Msa0857110:CDS
AGAAGTGTAGTGTTTGATTG+AGG 0.455534 5_4:+52404414 Msa0857110:three_prime_UTR
ACAGTGCACGTCATAAGTTT+TGG 0.460932 5_4:-52404296 None:intergenic
GAGAGGACGGTGACTCCGCC+GGG 0.463484 5_4:+52404057 Msa0857110:CDS
TGTCGTTTCCGGCTATTCTC+CGG 0.464903 5_4:-52402525 None:intergenic
ATTTGAGATTAGCCATACTT+TGG 0.467153 5_4:+52404578 Msa0857110:three_prime_UTR
GGCATTGGCGAGGAATAGTT+CGG 0.467216 5_4:+52404155 Msa0857110:CDS
TAGTGTTTGATTGAGGAGAA+AGG 0.469462 5_4:+52404421 Msa0857110:three_prime_UTR
GAAGTGAAGTGGCGGGAAAA+GGG 0.473008 5_4:+52404088 Msa0857110:CDS
CGAGCCGTTCTTTGCCGGAA+CGG 0.479701 5_4:+52403173 Msa0857110:CDS
TCCGGTTCCGATATAACATA+TGG 0.479797 5_4:-52403916 None:intergenic
AAAGTATGGCTAATCTCAAA+TGG 0.491505 5_4:-52404576 None:intergenic
TCCAACTCATCGGGTCGATC+CGG 0.491599 5_4:-52403315 None:intergenic
AGGTTAAAATTGTATCTTGT+GGG 0.492288 5_4:+52404441 Msa0857110:three_prime_UTR
TAAATCCAAACTCCGGCGAC+CGG 0.493888 5_4:-52402475 None:intergenic
TTTGTTGACGAAGTTGGCAT+TGG 0.495559 5_4:+52404140 Msa0857110:CDS
TTAATCCGATCCAACTCATC+GGG 0.496648 5_4:-52403324 None:intergenic
AAGAAACATTTGTAGTGGTA+AGG 0.498226 5_4:-52402272 None:intergenic
CGACCGGAAGGTCGTGAGCT+TGG 0.505187 5_4:-52402459 None:intergenic
CTCTCCGTTATGGTTACCTC+CGG 0.506227 5_4:-52403934 None:intergenic
AAAACAATTGATGTAAACTA+AGG 0.506596 5_4:+52404519 Msa0857110:three_prime_UTR
GCAAAACGACACGGCATGTA+GGG 0.509842 5_4:+52404011 Msa0857110:CDS
TGGGATGGTGCAAGAGTGCT+TGG 0.516594 5_4:+52403372 Msa0857110:CDS
AACATTTGTAGTGGTAAGGT+GGG 0.517613 5_4:-52402268 None:intergenic
TGGAGGACGTGTGATCTATT+GGG 0.519957 5_4:+52403353 Msa0857110:CDS
CAGATCCACCGGAGAATAGC+CGG 0.520939 5_4:+52402517 Msa0857110:CDS
TTTACTACCGTTGAAATACA+TGG 0.522704 5_4:+52402494 Msa0857110:CDS
TTGGCCATGTCAAGAGCTAT+TGG 0.527221 5_4:+52403399 Msa0857110:CDS
GCTCACGACCTTCCGGTCGC+CGG 0.528939 5_4:+52402463 Msa0857110:CDS
AGAGAGGACGGTGACTCCGC+CGG 0.530351 5_4:+52404056 Msa0857110:CDS
TTGGATCGGATTAATAAAGC+TGG 0.531348 5_4:+52403333 Msa0857110:CDS
AAACATTTGTAGTGGTAAGG+TGG 0.532395 5_4:-52402269 None:intergenic
ACTCCTCATTGTGATGCTGT+TGG 0.539210 5_4:+52403086 Msa0857110:CDS
TCCAAACTCCGGCGACCGGA+AGG 0.540570 5_4:-52402471 None:intergenic
GAAATACATGGCAGATCCAC+CGG 0.540962 5_4:+52402506 Msa0857110:CDS
TATGGAATAACATCAGTTTG+TGG 0.541161 5_4:+52402696 Msa0857110:CDS
TTGCAACTATGTGTAAAGAA+AGG 0.542336 5_4:+52402919 Msa0857110:CDS
AAGGTTAAAATTGTATCTTG+TGG 0.544861 5_4:+52404440 Msa0857110:three_prime_UTR
GCCGGATCGACCCGATGAGT+TGG 0.547516 5_4:+52403314 Msa0857110:intron
TGGAGAAGAAACATTTGTAG+TGG 0.550372 5_4:-52402277 None:intergenic
GGGGTCTCCGGGAAGTGAAG+TGG 0.551828 5_4:+52404077 Msa0857110:CDS
TGCAAGAGTGCTTGGAGTGT+TGG 0.556663 5_4:+52403380 Msa0857110:CDS
AACGCCGTTCCGGCAAAGAA+CGG 0.561662 5_4:-52403177 None:intergenic
AAGTACTGATGAAGAATCAA+AGG 0.567543 5_4:+52402617 Msa0857110:CDS
ATTAATCCGATCCAACTCAT+CGG 0.568369 5_4:-52403325 None:intergenic
CAACTTCGTCAACAAAATTG+AGG 0.568402 5_4:-52404133 None:intergenic
ACTTCACTTCCCGGAGACCC+CGG 0.569577 5_4:-52404075 None:intergenic
ACCTTATGATCGGTGGAAAG+AGG 0.572974 5_4:-52403206 None:intergenic
AAAATCATTGTTTCTAACTG+TGG 0.574633 5_4:+52403143 Msa0857110:CDS
GGCGGGAAAAGGGTCAGATA+AGG 0.576494 5_4:+52404098 Msa0857110:CDS
GAGATTTGTTGTGGTGTAGT+CGG 0.577151 5_4:+52402405 Msa0857110:CDS
CACGTCCCATAAGCCATCAC+TGG 0.578636 5_4:-52403986 None:intergenic
AATAAAACTAACCTTATGAT+CGG 0.584275 5_4:-52403216 None:intergenic
TGTTGTTGCCGTTGTTACGC+CGG 0.585472 5_4:+52403118 Msa0857110:CDS
TCAATGGCTGAGATTTGTTG+TGG 0.587476 5_4:+52402396 Msa0857110:exon
CAGTGATGGCTTATGGGACG+TGG 0.587939 5_4:+52403987 Msa0857110:CDS
TCTCCGGGAAGTGAAGTGGC+GGG 0.590927 5_4:+52404081 Msa0857110:CDS
AAAACTAACCTTATGATCGG+TGG 0.595604 5_4:-52403213 None:intergenic
GTCTCCGGGAAGTGAAGTGG+CGG 0.597167 5_4:+52404080 Msa0857110:CDS
ATCGACCCGATGAGTTGGAT+CGG 0.600754 5_4:+52403319 Msa0857110:CDS
GTGTCTCAAGGCAGAGAGGA+CGG 0.601395 5_4:+52404044 Msa0857110:CDS
TGTCTGATACTTGCCAGTGA+TGG 0.604846 5_4:+52403973 Msa0857110:CDS
GCAAAGTGGGAGGAAAATGG+TGG 0.605109 5_4:+52404354 Msa0857110:three_prime_UTR
GAATAACATCAGTTTGTGGA+AGG 0.606086 5_4:+52402700 Msa0857110:CDS
AGAAGAAAGAGAGAAAGAGA+AGG 0.606091 5_4:+52402959 Msa0857110:CDS
ATGATCGGTGGAAAGAGGAA+TGG 0.609265 5_4:-52403201 None:intergenic
CGTTTCCGGCTATTCTCCGG+TGG 0.614168 5_4:-52402522 None:intergenic
CATTTCTTCGGTGTTTACGA+CGG 0.617073 5_4:+52402783 Msa0857110:CDS
TGCAAAACGACACGGCATGT+AGG 0.625098 5_4:+52404010 Msa0857110:CDS
TCTGGACACCTATGATTCGT+AGG 0.628838 5_4:+52404320 Msa0857110:three_prime_UTR
GGTGGTGCAGATGTGTCTCA+AGG 0.630954 5_4:+52404032 Msa0857110:CDS
GGATCTGCCATGTATTTCAA+CGG 0.632939 5_4:-52402501 None:intergenic
TTCGGACAATGTTAGCGTGG+TGG 0.640919 5_4:+52404173 Msa0857110:CDS
TGACGAAGTTGGCATTGGCG+AGG 0.644130 5_4:+52404145 Msa0857110:CDS
CAAAGTGGGAGGAAAATGGT+GGG 0.644587 5_4:+52404355 Msa0857110:three_prime_UTR
GGTGGCGGTGGTGAAACAGA+TGG 0.647012 5_4:-52402558 None:intergenic
TAGTTCGGACAATGTTAGCG+TGG 0.649801 5_4:+52404170 Msa0857110:CDS
ACTACACTTCTAAAATCACA+TGG 0.651738 5_4:-52404402 None:intergenic
GAACCAACAGCATCACAATG+AGG 0.652964 5_4:-52403089 None:intergenic
CTCACCAATAGCTCTTGACA+TGG 0.655791 5_4:-52403403 None:intergenic
AAACGACACGGCATGTAGGG+TGG 0.658006 5_4:+52404014 Msa0857110:CDS
GGAACCGGAGGTAACCATAA+CGG 0.658388 5_4:+52403930 Msa0857110:CDS
GGACGTGGTGCAAAACGACA+CGG 0.659962 5_4:+52404002 Msa0857110:CDS
ACATTTGTAGTGGTAAGGTG+GGG 0.664194 5_4:-52402267 None:intergenic
ACGGTAGTAAATCCAAACTC+CGG 0.667701 5_4:-52402482 None:intergenic
GATCGGATTAATAAAGCTGG+AGG 0.670158 5_4:+52403336 Msa0857110:CDS
AAAGTGGGAGGAAAATGGTG+GGG 0.681985 5_4:+52404356 Msa0857110:three_prime_UTR
GGTTGACTGGAAGTCAACGA+TGG 0.683076 5_4:+52402980 Msa0857110:CDS
ATATGTTATATCGGAACCGG+AGG 0.683158 5_4:+52403918 Msa0857110:CDS
GGACGTGTGATCTATTGGGA+TGG 0.690438 5_4:+52403357 Msa0857110:CDS
AGAGGACGGTGACTCCGCCG+GGG 0.704487 5_4:+52404058 Msa0857110:CDS
AGATGTGTCTCAAGGCAGAG+AGG 0.713117 5_4:+52404040 Msa0857110:CDS
CATAACGGAGAGGAGTGACG+AGG 0.719275 5_4:+52403945 Msa0857110:CDS
CGGAGGTAACCATAACGGAG+AGG 0.720146 5_4:+52403935 Msa0857110:CDS
TCACTTCCCGGAGACCCCGG+CGG 0.744978 5_4:-52404072 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATGATTATGATAA+CGG - chr5_4:52402855-52402874 None:intergenic 10.0%
!! TAACAATTAATAATAGTAAT+AGG + chr5_4:52404228-52404247 Msa0857110:exon 10.0%
!! AACAATTAATAATAGTAATA+GGG + chr5_4:52404229-52404248 Msa0857110:exon 10.0%
!! AAAAAAAATGATTATGATAA+CGG - chr5_4:52402855-52402874 None:intergenic 10.0%
!! TAACAATTAATAATAGTAAT+AGG + chr5_4:52404228-52404247 Msa0857110:exon 10.0%
!! AACAATTAATAATAGTAATA+GGG + chr5_4:52404229-52404248 Msa0857110:exon 10.0%
!!! GTTATCATAATCATTTTTTT+TGG + chr5_4:52402854-52402873 Msa0857110:intron 15.0%
!! CATGATATATTATATAAACA+TGG - chr5_4:52403575-52403594 None:intergenic 15.0%
!! CATGTTTATATAATATATCA+TGG + chr5_4:52403573-52403592 Msa0857110:intron 15.0%
!!! AAAATGGTTCTAAATTATTA+TGG + chr5_4:52403863-52403882 Msa0857110:intron 15.0%
!!! TTATTATGGTTTATTTTTGT+AGG + chr5_4:52403877-52403896 Msa0857110:intron 15.0%
!!! TATTATGGTTTATTTTTGTA+GGG + chr5_4:52403878-52403897 Msa0857110:intron 15.0%
!!! GTTATCATAATCATTTTTTT+TGG + chr5_4:52402854-52402873 Msa0857110:intron 15.0%
!! CATGATATATTATATAAACA+TGG - chr5_4:52403575-52403594 None:intergenic 15.0%
!! CATGTTTATATAATATATCA+TGG + chr5_4:52403573-52403592 Msa0857110:intron 15.0%
!!! AAAATGGTTCTAAATTATTA+TGG + chr5_4:52403863-52403882 Msa0857110:intron 15.0%
!!! TTATTATGGTTTATTTTTGT+AGG + chr5_4:52403877-52403896 Msa0857110:intron 15.0%
!!! TATTATGGTTTATTTTTGTA+GGG + chr5_4:52403878-52403897 Msa0857110:intron 15.0%
!!! ATCATAATCATTTTTTTTGG+TGG + chr5_4:52402857-52402876 Msa0857110:intron 20.0%
!! AATAAAACTAACCTTATGAT+CGG - chr5_4:52403219-52403238 None:intergenic 20.0%
!! TATGCATCATTATTGAAAAA+TGG + chr5_4:52403847-52403866 Msa0857110:intron 20.0%
!!! ATTATGGTTTATTTTTGTAG+GGG + chr5_4:52403879-52403898 Msa0857110:intron 20.0%
!! AAAACAATTGATGTAAACTA+AGG + chr5_4:52404519-52404538 Msa0857110:three_prime_UTR 20.0%
!!! ATCATAATCATTTTTTTTGG+TGG + chr5_4:52402857-52402876 Msa0857110:intron 20.0%
!! AATAAAACTAACCTTATGAT+CGG - chr5_4:52403219-52403238 None:intergenic 20.0%
!! TATGCATCATTATTGAAAAA+TGG + chr5_4:52403847-52403866 Msa0857110:intron 20.0%
!!! ATTATGGTTTATTTTTGTAG+GGG + chr5_4:52403879-52403898 Msa0857110:intron 20.0%
!! AAAACAATTGATGTAAACTA+AGG + chr5_4:52404519-52404538 Msa0857110:three_prime_UTR 20.0%
! TGAAACACAATCAATTGAAA+TGG - chr5_4:52402307-52402326 None:intergenic 25.0%
!!! CATCATTCAATTTTGATCAA+TGG + chr5_4:52402380-52402399 Msa0857110:exon 25.0%
!! ACTGATGTTATTCCATATTT+TGG - chr5_4:52402693-52402712 None:intergenic 25.0%
! GAAAAACAAGATCATTTCTT+CGG + chr5_4:52402771-52402790 Msa0857110:CDS 25.0%
!! TTTTATTAGAATGGATGAAG+AGG + chr5_4:52403010-52403029 Msa0857110:CDS 25.0%
!! TTAGAAACAATGATTTTCTC+CGG - chr5_4:52403140-52403159 None:intergenic 25.0%
!!! AAAATCATTGTTTCTAACTG+TGG + chr5_4:52403143-52403162 Msa0857110:CDS 25.0%
!! GTATTTGATTAGTTCAAATG+TGG + chr5_4:52403476-52403495 Msa0857110:intron 25.0%
!! TTGTGCATGATTTCATTTTA+CGG + chr5_4:52403499-52403518 Msa0857110:intron 25.0%
!!! TTTTTTTAGCACAATATGTG+TGG - chr5_4:52403818-52403837 None:intergenic 25.0%
! TAGTAATAGGGATTGATTAA+TGG + chr5_4:52404241-52404260 Msa0857110:three_prime_UTR 25.0%
! TAAAAAATCCTACGAATCAT+AGG - chr5_4:52404331-52404350 None:intergenic 25.0%
!!! TGATTCGTAGGATTTTTTAT+TGG + chr5_4:52404332-52404351 Msa0857110:three_prime_UTR 25.0%
! AATCATCAGAAAAAATCTCA+AGG - chr5_4:52404382-52404401 None:intergenic 25.0%
! AAGGTTAAAATTGTATCTTG+TGG + chr5_4:52404440-52404459 Msa0857110:three_prime_UTR 25.0%
! AGGTTAAAATTGTATCTTGT+GGG + chr5_4:52404441-52404460 Msa0857110:three_prime_UTR 25.0%
! CGTATAAAGAAGACATATAT+TGG + chr5_4:52404547-52404566 Msa0857110:three_prime_UTR 25.0%
! TGAAACACAATCAATTGAAA+TGG - chr5_4:52402307-52402326 None:intergenic 25.0%
!!! CATCATTCAATTTTGATCAA+TGG + chr5_4:52402380-52402399 Msa0857110:exon 25.0%
!! ACTGATGTTATTCCATATTT+TGG - chr5_4:52402693-52402712 None:intergenic 25.0%
! GAAAAACAAGATCATTTCTT+CGG + chr5_4:52402771-52402790 Msa0857110:CDS 25.0%
!! TTTTATTAGAATGGATGAAG+AGG + chr5_4:52403010-52403029 Msa0857110:CDS 25.0%
!! TTAGAAACAATGATTTTCTC+CGG - chr5_4:52403140-52403159 None:intergenic 25.0%
!!! AAAATCATTGTTTCTAACTG+TGG + chr5_4:52403143-52403162 Msa0857110:CDS 25.0%
!! GTATTTGATTAGTTCAAATG+TGG + chr5_4:52403476-52403495 Msa0857110:intron 25.0%
!! TTGTGCATGATTTCATTTTA+CGG + chr5_4:52403499-52403518 Msa0857110:intron 25.0%
!!! TTTTTTTAGCACAATATGTG+TGG - chr5_4:52403818-52403837 None:intergenic 25.0%
! TAGTAATAGGGATTGATTAA+TGG + chr5_4:52404241-52404260 Msa0857110:three_prime_UTR 25.0%
! TAAAAAATCCTACGAATCAT+AGG - chr5_4:52404331-52404350 None:intergenic 25.0%
!!! TGATTCGTAGGATTTTTTAT+TGG + chr5_4:52404332-52404351 Msa0857110:three_prime_UTR 25.0%
! AATCATCAGAAAAAATCTCA+AGG - chr5_4:52404382-52404401 None:intergenic 25.0%
! AAGGTTAAAATTGTATCTTG+TGG + chr5_4:52404440-52404459 Msa0857110:three_prime_UTR 25.0%
! AGGTTAAAATTGTATCTTGT+GGG + chr5_4:52404441-52404460 Msa0857110:three_prime_UTR 25.0%
! CGTATAAAGAAGACATATAT+TGG + chr5_4:52404547-52404566 Msa0857110:three_prime_UTR 25.0%
AAGAAACATTTGTAGTGGTA+AGG - chr5_4:52402275-52402294 None:intergenic 30.0%
CAATCAATTGAAATGGTGTT+TGG - chr5_4:52402300-52402319 None:intergenic 30.0%
TTTACTACCGTTGAAATACA+TGG + chr5_4:52402494-52402513 Msa0857110:CDS 30.0%
!! AAGTACTGATGAAGAATCAA+AGG + chr5_4:52402617-52402636 Msa0857110:CDS 30.0%
GAAGAATGTTCTCCAAAATA+TGG + chr5_4:52402678-52402697 Msa0857110:CDS 30.0%
TATGGAATAACATCAGTTTG+TGG + chr5_4:52402696-52402715 Msa0857110:CDS 30.0%
!!! GGTGGATCTGTTTTTTAATT+AGG + chr5_4:52402875-52402894 Msa0857110:intron 30.0%
!! GGTTGATGTGTTTTTACTAT+AGG + chr5_4:52402896-52402915 Msa0857110:intron 30.0%
TTGCAACTATGTGTAAAGAA+AGG + chr5_4:52402919-52402938 Msa0857110:CDS 30.0%
!!! GGAGAAGAGTTTTATTAGAA+TGG + chr5_4:52403001-52403020 Msa0857110:CDS 30.0%
ATCACGATCAATAAGTAGTT+TGG - chr5_4:52403668-52403687 None:intergenic 30.0%
! TACGATATTTTGTATCACAC+CGG - chr5_4:52403701-52403720 None:intergenic 30.0%
CAATAATGATGCATAACGTA+TGG - chr5_4:52403842-52403861 None:intergenic 30.0%
CTTGAAGCCATATGTTATAT+CGG + chr5_4:52403909-52403928 Msa0857110:CDS 30.0%
TAGGGATTGATTAATGGAAT+TGG + chr5_4:52404247-52404266 Msa0857110:three_prime_UTR 30.0%
!!! AGGATTTTTTATTGGCAAAG+TGG + chr5_4:52404340-52404359 Msa0857110:three_prime_UTR 30.0%
!!! GGATTTTTTATTGGCAAAGT+GGG + chr5_4:52404341-52404360 Msa0857110:three_prime_UTR 30.0%
!! ACTACACTTCTAAAATCACA+TGG - chr5_4:52404405-52404424 None:intergenic 30.0%
!! AAGAAGACATATATTGGCTT+TGG + chr5_4:52404553-52404572 Msa0857110:three_prime_UTR 30.0%
AAAGTATGGCTAATCTCAAA+TGG - chr5_4:52404579-52404598 None:intergenic 30.0%
! ATTTGAGATTAGCCATACTT+TGG + chr5_4:52404578-52404597 Msa0857110:three_prime_UTR 30.0%
AAGAAACATTTGTAGTGGTA+AGG - chr5_4:52402275-52402294 None:intergenic 30.0%
CAATCAATTGAAATGGTGTT+TGG - chr5_4:52402300-52402319 None:intergenic 30.0%
TTTACTACCGTTGAAATACA+TGG + chr5_4:52402494-52402513 Msa0857110:CDS 30.0%
!! AAGTACTGATGAAGAATCAA+AGG + chr5_4:52402617-52402636 Msa0857110:CDS 30.0%
GAAGAATGTTCTCCAAAATA+TGG + chr5_4:52402678-52402697 Msa0857110:CDS 30.0%
TATGGAATAACATCAGTTTG+TGG + chr5_4:52402696-52402715 Msa0857110:CDS 30.0%
!!! GGTGGATCTGTTTTTTAATT+AGG + chr5_4:52402875-52402894 Msa0857110:intron 30.0%
!! GGTTGATGTGTTTTTACTAT+AGG + chr5_4:52402896-52402915 Msa0857110:intron 30.0%
TTGCAACTATGTGTAAAGAA+AGG + chr5_4:52402919-52402938 Msa0857110:CDS 30.0%
!!! GGAGAAGAGTTTTATTAGAA+TGG + chr5_4:52403001-52403020 Msa0857110:CDS 30.0%
ATCACGATCAATAAGTAGTT+TGG - chr5_4:52403668-52403687 None:intergenic 30.0%
! TACGATATTTTGTATCACAC+CGG - chr5_4:52403701-52403720 None:intergenic 30.0%
CAATAATGATGCATAACGTA+TGG - chr5_4:52403842-52403861 None:intergenic 30.0%
CTTGAAGCCATATGTTATAT+CGG + chr5_4:52403909-52403928 Msa0857110:CDS 30.0%
TAGGGATTGATTAATGGAAT+TGG + chr5_4:52404247-52404266 Msa0857110:three_prime_UTR 30.0%
!!! AGGATTTTTTATTGGCAAAG+TGG + chr5_4:52404340-52404359 Msa0857110:three_prime_UTR 30.0%
!!! GGATTTTTTATTGGCAAAGT+GGG + chr5_4:52404341-52404360 Msa0857110:three_prime_UTR 30.0%
!! ACTACACTTCTAAAATCACA+TGG - chr5_4:52404405-52404424 None:intergenic 30.0%
!! AAGAAGACATATATTGGCTT+TGG + chr5_4:52404553-52404572 Msa0857110:three_prime_UTR 30.0%
AAAGTATGGCTAATCTCAAA+TGG - chr5_4:52404579-52404598 None:intergenic 30.0%
! ATTTGAGATTAGCCATACTT+TGG + chr5_4:52404578-52404597 Msa0857110:three_prime_UTR 30.0%
AACATTTGTAGTGGTAAGGT+GGG - chr5_4:52402271-52402290 None:intergenic 35.0%
AAACATTTGTAGTGGTAAGG+TGG - chr5_4:52402272-52402291 None:intergenic 35.0%
TGGAGAAGAAACATTTGTAG+TGG - chr5_4:52402280-52402299 None:intergenic 35.0%
GAATAACATCAGTTTGTGGA+AGG + chr5_4:52402700-52402719 Msa0857110:CDS 35.0%
TTGTGGAAGGAGAAAAGAAA+TGG + chr5_4:52402713-52402732 Msa0857110:CDS 35.0%
AGAAGAAAGAGAGAAAGAGA+AGG + chr5_4:52402959-52402978 Msa0857110:CDS 35.0%
AAAACTAACCTTATGATCGG+TGG - chr5_4:52403216-52403235 None:intergenic 35.0%
ATTAATCCGATCCAACTCAT+CGG - chr5_4:52403328-52403347 None:intergenic 35.0%
TTGGATCGGATTAATAAAGC+TGG + chr5_4:52403333-52403352 Msa0857110:CDS 35.0%
GTTTGGTATCACAATTGTGT+CGG - chr5_4:52403651-52403670 None:intergenic 35.0%
ACGATCTAACATCAACATGT+AGG - chr5_4:52403771-52403790 None:intergenic 35.0%
CAACTTCGTCAACAAAATTG+AGG - chr5_4:52404136-52404155 None:intergenic 35.0%
! CTCAATTTTGTTGACGAAGT+TGG + chr5_4:52404134-52404153 Msa0857110:CDS 35.0%
!!! TTTTTTATTGGCAAAGTGGG+AGG + chr5_4:52404344-52404363 Msa0857110:three_prime_UTR 35.0%
! AGAAGTGTAGTGTTTGATTG+AGG + chr5_4:52404414-52404433 Msa0857110:three_prime_UTR 35.0%
TAGTGTTTGATTGAGGAGAA+AGG + chr5_4:52404421-52404440 Msa0857110:three_prime_UTR 35.0%
TGTATCTTGTGGGAAACAAT+TGG + chr5_4:52404451-52404470 Msa0857110:three_prime_UTR 35.0%
TCTCAACATAGACCAAAGTA+TGG - chr5_4:52404593-52404612 None:intergenic 35.0%
AACATTTGTAGTGGTAAGGT+GGG - chr5_4:52402271-52402290 None:intergenic 35.0%
AAACATTTGTAGTGGTAAGG+TGG - chr5_4:52402272-52402291 None:intergenic 35.0%
TGGAGAAGAAACATTTGTAG+TGG - chr5_4:52402280-52402299 None:intergenic 35.0%
GAATAACATCAGTTTGTGGA+AGG + chr5_4:52402700-52402719 Msa0857110:CDS 35.0%
TTGTGGAAGGAGAAAAGAAA+TGG + chr5_4:52402713-52402732 Msa0857110:CDS 35.0%
AGAAGAAAGAGAGAAAGAGA+AGG + chr5_4:52402959-52402978 Msa0857110:CDS 35.0%
AAAACTAACCTTATGATCGG+TGG - chr5_4:52403216-52403235 None:intergenic 35.0%
ATTAATCCGATCCAACTCAT+CGG - chr5_4:52403328-52403347 None:intergenic 35.0%
TTGGATCGGATTAATAAAGC+TGG + chr5_4:52403333-52403352 Msa0857110:CDS 35.0%
GTTTGGTATCACAATTGTGT+CGG - chr5_4:52403651-52403670 None:intergenic 35.0%
ACGATCTAACATCAACATGT+AGG - chr5_4:52403771-52403790 None:intergenic 35.0%
CAACTTCGTCAACAAAATTG+AGG - chr5_4:52404136-52404155 None:intergenic 35.0%
! CTCAATTTTGTTGACGAAGT+TGG + chr5_4:52404134-52404153 Msa0857110:CDS 35.0%
!!! TTTTTTATTGGCAAAGTGGG+AGG + chr5_4:52404344-52404363 Msa0857110:three_prime_UTR 35.0%
! AGAAGTGTAGTGTTTGATTG+AGG + chr5_4:52404414-52404433 Msa0857110:three_prime_UTR 35.0%
TAGTGTTTGATTGAGGAGAA+AGG + chr5_4:52404421-52404440 Msa0857110:three_prime_UTR 35.0%
TGTATCTTGTGGGAAACAAT+TGG + chr5_4:52404451-52404470 Msa0857110:three_prime_UTR 35.0%
TCTCAACATAGACCAAAGTA+TGG - chr5_4:52404593-52404612 None:intergenic 35.0%
ACATTTGTAGTGGTAAGGTG+GGG - chr5_4:52402270-52402289 None:intergenic 40.0%
!! TCAATGGCTGAGATTTGTTG+TGG + chr5_4:52402396-52402415 Msa0857110:exon 40.0%
!! GAGATTTGTTGTGGTGTAGT+CGG + chr5_4:52402405-52402424 Msa0857110:CDS 40.0%
ACGGTAGTAAATCCAAACTC+CGG - chr5_4:52402485-52402504 None:intergenic 40.0%
GGATCTGCCATGTATTTCAA+CGG - chr5_4:52402504-52402523 None:intergenic 40.0%
!! CATTTCTTCGGTGTTTACGA+CGG + chr5_4:52402783-52402802 Msa0857110:CDS 40.0%
TTAATCCGATCCAACTCATC+GGG - chr5_4:52403327-52403346 None:intergenic 40.0%
GATCGGATTAATAAAGCTGG+AGG + chr5_4:52403336-52403355 Msa0857110:CDS 40.0%
TGTTACCCTTGATTCATACG+TGG + chr5_4:52403545-52403564 Msa0857110:intron 40.0%
GACAACCACGTATGAATCAA+GGG - chr5_4:52403553-52403572 None:intergenic 40.0%
GATCGTGATTCTAACACATC+CGG + chr5_4:52403679-52403698 Msa0857110:intron 40.0%
CAATATGTGTGGTATGACGA+TGG - chr5_4:52403807-52403826 None:intergenic 40.0%
GCCATATGTTATATCGGAAC+CGG + chr5_4:52403915-52403934 Msa0857110:CDS 40.0%
TCCGGTTCCGATATAACATA+TGG - chr5_4:52403919-52403938 None:intergenic 40.0%
ATATGTTATATCGGAACCGG+AGG + chr5_4:52403918-52403937 Msa0857110:CDS 40.0%
TTTGTTGACGAAGTTGGCAT+TGG + chr5_4:52404140-52404159 Msa0857110:CDS 40.0%
!! TGCACGTCATAAGTTTTGGT+CGG - chr5_4:52404295-52404314 None:intergenic 40.0%
! ACAGTGCACGTCATAAGTTT+TGG - chr5_4:52404299-52404318 None:intergenic 40.0%
ACATTTGTAGTGGTAAGGTG+GGG - chr5_4:52402270-52402289 None:intergenic 40.0%
!! TCAATGGCTGAGATTTGTTG+TGG + chr5_4:52402396-52402415 Msa0857110:exon 40.0%
!! GAGATTTGTTGTGGTGTAGT+CGG + chr5_4:52402405-52402424 Msa0857110:CDS 40.0%
ACGGTAGTAAATCCAAACTC+CGG - chr5_4:52402485-52402504 None:intergenic 40.0%
GGATCTGCCATGTATTTCAA+CGG - chr5_4:52402504-52402523 None:intergenic 40.0%
!! CATTTCTTCGGTGTTTACGA+CGG + chr5_4:52402783-52402802 Msa0857110:CDS 40.0%
TTAATCCGATCCAACTCATC+GGG - chr5_4:52403327-52403346 None:intergenic 40.0%
GATCGGATTAATAAAGCTGG+AGG + chr5_4:52403336-52403355 Msa0857110:CDS 40.0%
TGTTACCCTTGATTCATACG+TGG + chr5_4:52403545-52403564 Msa0857110:intron 40.0%
GACAACCACGTATGAATCAA+GGG - chr5_4:52403553-52403572 None:intergenic 40.0%
GATCGTGATTCTAACACATC+CGG + chr5_4:52403679-52403698 Msa0857110:intron 40.0%
CAATATGTGTGGTATGACGA+TGG - chr5_4:52403807-52403826 None:intergenic 40.0%
GCCATATGTTATATCGGAAC+CGG + chr5_4:52403915-52403934 Msa0857110:CDS 40.0%
TCCGGTTCCGATATAACATA+TGG - chr5_4:52403919-52403938 None:intergenic 40.0%
ATATGTTATATCGGAACCGG+AGG + chr5_4:52403918-52403937 Msa0857110:CDS 40.0%
TTTGTTGACGAAGTTGGCAT+TGG + chr5_4:52404140-52404159 Msa0857110:CDS 40.0%
!! TGCACGTCATAAGTTTTGGT+CGG - chr5_4:52404295-52404314 None:intergenic 40.0%
! ACAGTGCACGTCATAAGTTT+TGG - chr5_4:52404299-52404318 None:intergenic 40.0%
GAAATACATGGCAGATCCAC+CGG + chr5_4:52402506-52402525 Msa0857110:CDS 45.0%
! GATCTAGCTTCTGTCGTTTC+CGG - chr5_4:52402539-52402558 None:intergenic 45.0%
! ACTGTGTTTTCGCATTCTCG+CGG - chr5_4:52402582-52402601 None:intergenic 45.0%
GAGAGAAAGAGAAGGTTGAC+TGG + chr5_4:52402967-52402986 Msa0857110:CDS 45.0%
ACTCCTCATTGTGATGCTGT+TGG + chr5_4:52403086-52403105 Msa0857110:CDS 45.0%
GAACCAACAGCATCACAATG+AGG - chr5_4:52403092-52403111 None:intergenic 45.0%
! GATTTTCTCCGGCGTAACAA+CGG - chr5_4:52403129-52403148 None:intergenic 45.0%
ATGATCGGTGGAAAGAGGAA+TGG - chr5_4:52403204-52403223 None:intergenic 45.0%
TCCTCTTTCCACCGATCATA+AGG + chr5_4:52403205-52403224 Msa0857110:CDS 45.0%
ACCTTATGATCGGTGGAAAG+AGG - chr5_4:52403209-52403228 None:intergenic 45.0%
TGGAGGACGTGTGATCTATT+GGG + chr5_4:52403353-52403372 Msa0857110:CDS 45.0%
TTGGCCATGTCAAGAGCTAT+TGG + chr5_4:52403399-52403418 Msa0857110:CDS 45.0%
CTCACCAATAGCTCTTGACA+TGG - chr5_4:52403406-52403425 None:intergenic 45.0%
GGACAACCACGTATGAATCA+AGG - chr5_4:52403554-52403573 None:intergenic 45.0%
TGTCTGATACTTGCCAGTGA+TGG + chr5_4:52403973-52403992 Msa0857110:CDS 45.0%
TACTTGCCAGTGATGGCTTA+TGG + chr5_4:52403980-52403999 Msa0857110:CDS 45.0%
ACTTGCCAGTGATGGCTTAT+GGG + chr5_4:52403981-52404000 Msa0857110:CDS 45.0%
TAGTTCGGACAATGTTAGCG+TGG + chr5_4:52404170-52404189 Msa0857110:CDS 45.0%
TCTGGACACCTATGATTCGT+AGG + chr5_4:52404320-52404339 Msa0857110:three_prime_UTR 45.0%
TTGGCAAAGTGGGAGGAAAA+TGG + chr5_4:52404351-52404370 Msa0857110:three_prime_UTR 45.0%
CAAAGTGGGAGGAAAATGGT+GGG + chr5_4:52404355-52404374 Msa0857110:three_prime_UTR 45.0%
AAAGTGGGAGGAAAATGGTG+GGG + chr5_4:52404356-52404375 Msa0857110:three_prime_UTR 45.0%
GAAATACATGGCAGATCCAC+CGG + chr5_4:52402506-52402525 Msa0857110:CDS 45.0%
! GATCTAGCTTCTGTCGTTTC+CGG - chr5_4:52402539-52402558 None:intergenic 45.0%
! ACTGTGTTTTCGCATTCTCG+CGG - chr5_4:52402582-52402601 None:intergenic 45.0%
GAGAGAAAGAGAAGGTTGAC+TGG + chr5_4:52402967-52402986 Msa0857110:CDS 45.0%
ACTCCTCATTGTGATGCTGT+TGG + chr5_4:52403086-52403105 Msa0857110:CDS 45.0%
GAACCAACAGCATCACAATG+AGG - chr5_4:52403092-52403111 None:intergenic 45.0%
! GATTTTCTCCGGCGTAACAA+CGG - chr5_4:52403129-52403148 None:intergenic 45.0%
ATGATCGGTGGAAAGAGGAA+TGG - chr5_4:52403204-52403223 None:intergenic 45.0%
TCCTCTTTCCACCGATCATA+AGG + chr5_4:52403205-52403224 Msa0857110:CDS 45.0%
ACCTTATGATCGGTGGAAAG+AGG - chr5_4:52403209-52403228 None:intergenic 45.0%
TGGAGGACGTGTGATCTATT+GGG + chr5_4:52403353-52403372 Msa0857110:CDS 45.0%
TTGGCCATGTCAAGAGCTAT+TGG + chr5_4:52403399-52403418 Msa0857110:CDS 45.0%
CTCACCAATAGCTCTTGACA+TGG - chr5_4:52403406-52403425 None:intergenic 45.0%
GGACAACCACGTATGAATCA+AGG - chr5_4:52403554-52403573 None:intergenic 45.0%
TGTCTGATACTTGCCAGTGA+TGG + chr5_4:52403973-52403992 Msa0857110:CDS 45.0%
TACTTGCCAGTGATGGCTTA+TGG + chr5_4:52403980-52403999 Msa0857110:CDS 45.0%
ACTTGCCAGTGATGGCTTAT+GGG + chr5_4:52403981-52404000 Msa0857110:CDS 45.0%
TAGTTCGGACAATGTTAGCG+TGG + chr5_4:52404170-52404189 Msa0857110:CDS 45.0%
TCTGGACACCTATGATTCGT+AGG + chr5_4:52404320-52404339 Msa0857110:three_prime_UTR 45.0%
TTGGCAAAGTGGGAGGAAAA+TGG + chr5_4:52404351-52404370 Msa0857110:three_prime_UTR 45.0%
CAAAGTGGGAGGAAAATGGT+GGG + chr5_4:52404355-52404374 Msa0857110:three_prime_UTR 45.0%
AAAGTGGGAGGAAAATGGTG+GGG + chr5_4:52404356-52404375 Msa0857110:three_prime_UTR 45.0%
!!! GATTTATTAATTTTTTTAAA+AGG + chr5_4:52404611-52404630 Msa0857110:three_prime_UTR 5.0%
!!! GATTTATTAATTTTTTTAAA+AGG + chr5_4:52404611-52404630 Msa0857110:three_prime_UTR 5.0%
TAAATCCAAACTCCGGCGAC+CGG - chr5_4:52402478-52402497 None:intergenic 50.0%
! TGTCGTTTCCGGCTATTCTC+CGG - chr5_4:52402528-52402547 None:intergenic 50.0%
!! TTCGGTGTTTACGACGGTCA+TGG + chr5_4:52402789-52402808 Msa0857110:CDS 50.0%
GGTTGACTGGAAGTCAACGA+TGG + chr5_4:52402980-52402999 Msa0857110:CDS 50.0%
TGTTGTTGCCGTTGTTACGC+CGG + chr5_4:52403118-52403137 Msa0857110:CDS 50.0%
ATTCACGAGCCGTTCTTTGC+CGG + chr5_4:52403168-52403187 Msa0857110:CDS 50.0%
TCCGGCTGCACAAACGAATA+CGG - chr5_4:52403300-52403319 None:intergenic 50.0%
! ATCGACCCGATGAGTTGGAT+CGG + chr5_4:52403319-52403338 Msa0857110:CDS 50.0%
CTGGAGGACGTGTGATCTAT+TGG + chr5_4:52403352-52403371 Msa0857110:CDS 50.0%
GGACGTGTGATCTATTGGGA+TGG + chr5_4:52403357-52403376 Msa0857110:CDS 50.0%
!! TGCAAGAGTGCTTGGAGTGT+TGG + chr5_4:52403380-52403399 Msa0857110:CDS 50.0%
GGAACCGGAGGTAACCATAA+CGG + chr5_4:52403930-52403949 Msa0857110:CDS 50.0%
CTCTCCGTTATGGTTACCTC+CGG - chr5_4:52403937-52403956 None:intergenic 50.0%
TGCAAAACGACACGGCATGT+AGG + chr5_4:52404010-52404029 Msa0857110:CDS 50.0%
GCAAAACGACACGGCATGTA+GGG + chr5_4:52404011-52404030 Msa0857110:CDS 50.0%
AGATGTGTCTCAAGGCAGAG+AGG + chr5_4:52404040-52404059 Msa0857110:CDS 50.0%
! GAAGTGAAGTGGCGGGAAAA+GGG + chr5_4:52404088-52404107 Msa0857110:CDS 50.0%
AGGGTCAGATAAGGCGTGTT+CGG + chr5_4:52404107-52404126 Msa0857110:CDS 50.0%
!! GGCATTGGCGAGGAATAGTT+CGG + chr5_4:52404155-52404174 Msa0857110:CDS 50.0%
TTCGGACAATGTTAGCGTGG+TGG + chr5_4:52404173-52404192 Msa0857110:CDS 50.0%
!! GCGTGGTGGTTGTTGATTTG+AGG + chr5_4:52404187-52404206 Msa0857110:CDS 50.0%
CTTATGACGTGCACTGTGTC+TGG + chr5_4:52404302-52404321 Msa0857110:three_prime_UTR 50.0%
GCAAAGTGGGAGGAAAATGG+TGG + chr5_4:52404354-52404373 Msa0857110:three_prime_UTR 50.0%
TAAATCCAAACTCCGGCGAC+CGG - chr5_4:52402478-52402497 None:intergenic 50.0%
! TGTCGTTTCCGGCTATTCTC+CGG - chr5_4:52402528-52402547 None:intergenic 50.0%
!! TTCGGTGTTTACGACGGTCA+TGG + chr5_4:52402789-52402808 Msa0857110:CDS 50.0%
GGTTGACTGGAAGTCAACGA+TGG + chr5_4:52402980-52402999 Msa0857110:CDS 50.0%
TGTTGTTGCCGTTGTTACGC+CGG + chr5_4:52403118-52403137 Msa0857110:CDS 50.0%
ATTCACGAGCCGTTCTTTGC+CGG + chr5_4:52403168-52403187 Msa0857110:CDS 50.0%
TCCGGCTGCACAAACGAATA+CGG - chr5_4:52403300-52403319 None:intergenic 50.0%
! ATCGACCCGATGAGTTGGAT+CGG + chr5_4:52403319-52403338 Msa0857110:CDS 50.0%
CTGGAGGACGTGTGATCTAT+TGG + chr5_4:52403352-52403371 Msa0857110:CDS 50.0%
GGACGTGTGATCTATTGGGA+TGG + chr5_4:52403357-52403376 Msa0857110:CDS 50.0%
!! TGCAAGAGTGCTTGGAGTGT+TGG + chr5_4:52403380-52403399 Msa0857110:CDS 50.0%
GGAACCGGAGGTAACCATAA+CGG + chr5_4:52403930-52403949 Msa0857110:CDS 50.0%
CTCTCCGTTATGGTTACCTC+CGG - chr5_4:52403937-52403956 None:intergenic 50.0%
TGCAAAACGACACGGCATGT+AGG + chr5_4:52404010-52404029 Msa0857110:CDS 50.0%
GCAAAACGACACGGCATGTA+GGG + chr5_4:52404011-52404030 Msa0857110:CDS 50.0%
AGATGTGTCTCAAGGCAGAG+AGG + chr5_4:52404040-52404059 Msa0857110:CDS 50.0%
! GAAGTGAAGTGGCGGGAAAA+GGG + chr5_4:52404088-52404107 Msa0857110:CDS 50.0%
AGGGTCAGATAAGGCGTGTT+CGG + chr5_4:52404107-52404126 Msa0857110:CDS 50.0%
!! GGCATTGGCGAGGAATAGTT+CGG + chr5_4:52404155-52404174 Msa0857110:CDS 50.0%
TTCGGACAATGTTAGCGTGG+TGG + chr5_4:52404173-52404192 Msa0857110:CDS 50.0%
!! GCGTGGTGGTTGTTGATTTG+AGG + chr5_4:52404187-52404206 Msa0857110:CDS 50.0%
CTTATGACGTGCACTGTGTC+TGG + chr5_4:52404302-52404321 Msa0857110:three_prime_UTR 50.0%
GCAAAGTGGGAGGAAAATGG+TGG + chr5_4:52404354-52404373 Msa0857110:three_prime_UTR 50.0%
GGTCGTGAGCTTGGTTCAAC+TGG - chr5_4:52402453-52402472 None:intergenic 55.0%
GAACCAAGCTCACGACCTTC+CGG + chr5_4:52402456-52402475 Msa0857110:CDS 55.0%
CAGATCCACCGGAGAATAGC+CGG + chr5_4:52402517-52402536 Msa0857110:CDS 55.0%
! TTTTCGCATTCTCGCGGTGG+CGG - chr5_4:52402576-52402595 None:intergenic 55.0%
! GTGTTTTCGCATTCTCGCGG+TGG - chr5_4:52402579-52402598 None:intergenic 55.0%
AACGCCGTTCCGGCAAAGAA+CGG - chr5_4:52403180-52403199 None:intergenic 55.0%
CCGGCTGCACAAACGAATAC+GGG - chr5_4:52403299-52403318 None:intergenic 55.0%
CCCGTATTCGTTTGTGCAGC+CGG + chr5_4:52403296-52403315 Msa0857110:intron 55.0%
TCCAACTCATCGGGTCGATC+CGG - chr5_4:52403318-52403337 None:intergenic 55.0%
!! TGGGATGGTGCAAGAGTGCT+TGG + chr5_4:52403372-52403391 Msa0857110:CDS 55.0%
! CGGAGGTAACCATAACGGAG+AGG + chr5_4:52403935-52403954 Msa0857110:CDS 55.0%
CTCGTCACTCCTCTCCGTTA+TGG - chr5_4:52403947-52403966 None:intergenic 55.0%
! CATAACGGAGAGGAGTGACG+AGG + chr5_4:52403945-52403964 Msa0857110:CDS 55.0%
CACGTCCCATAAGCCATCAC+TGG - chr5_4:52403989-52404008 None:intergenic 55.0%
CAGTGATGGCTTATGGGACG+TGG + chr5_4:52403987-52404006 Msa0857110:CDS 55.0%
GGACGTGGTGCAAAACGACA+CGG + chr5_4:52404002-52404021 Msa0857110:CDS 55.0%
AAACGACACGGCATGTAGGG+TGG + chr5_4:52404014-52404033 Msa0857110:CDS 55.0%
GGTGGTGCAGATGTGTCTCA+AGG + chr5_4:52404032-52404051 Msa0857110:CDS 55.0%
GTGTCTCAAGGCAGAGAGGA+CGG + chr5_4:52404044-52404063 Msa0857110:CDS 55.0%
TTTCCCGCCACTTCACTTCC+CGG - chr5_4:52404087-52404106 None:intergenic 55.0%
! GGAAGTGAAGTGGCGGGAAA+AGG + chr5_4:52404087-52404106 Msa0857110:CDS 55.0%
GGCGGGAAAAGGGTCAGATA+AGG + chr5_4:52404098-52404117 Msa0857110:CDS 55.0%
!! TGACGAAGTTGGCATTGGCG+AGG + chr5_4:52404145-52404164 Msa0857110:CDS 55.0%
GGTCGTGAGCTTGGTTCAAC+TGG - chr5_4:52402453-52402472 None:intergenic 55.0%
GAACCAAGCTCACGACCTTC+CGG + chr5_4:52402456-52402475 Msa0857110:CDS 55.0%
CAGATCCACCGGAGAATAGC+CGG + chr5_4:52402517-52402536 Msa0857110:CDS 55.0%
! TTTTCGCATTCTCGCGGTGG+CGG - chr5_4:52402576-52402595 None:intergenic 55.0%
! GTGTTTTCGCATTCTCGCGG+TGG - chr5_4:52402579-52402598 None:intergenic 55.0%
AACGCCGTTCCGGCAAAGAA+CGG - chr5_4:52403180-52403199 None:intergenic 55.0%
CCGGCTGCACAAACGAATAC+GGG - chr5_4:52403299-52403318 None:intergenic 55.0%
CCCGTATTCGTTTGTGCAGC+CGG + chr5_4:52403296-52403315 Msa0857110:intron 55.0%
TCCAACTCATCGGGTCGATC+CGG - chr5_4:52403318-52403337 None:intergenic 55.0%
!! TGGGATGGTGCAAGAGTGCT+TGG + chr5_4:52403372-52403391 Msa0857110:CDS 55.0%
! CGGAGGTAACCATAACGGAG+AGG + chr5_4:52403935-52403954 Msa0857110:CDS 55.0%
CTCGTCACTCCTCTCCGTTA+TGG - chr5_4:52403947-52403966 None:intergenic 55.0%
! CATAACGGAGAGGAGTGACG+AGG + chr5_4:52403945-52403964 Msa0857110:CDS 55.0%
CACGTCCCATAAGCCATCAC+TGG - chr5_4:52403989-52404008 None:intergenic 55.0%
CAGTGATGGCTTATGGGACG+TGG + chr5_4:52403987-52404006 Msa0857110:CDS 55.0%
GGACGTGGTGCAAAACGACA+CGG + chr5_4:52404002-52404021 Msa0857110:CDS 55.0%
AAACGACACGGCATGTAGGG+TGG + chr5_4:52404014-52404033 Msa0857110:CDS 55.0%
GGTGGTGCAGATGTGTCTCA+AGG + chr5_4:52404032-52404051 Msa0857110:CDS 55.0%
GTGTCTCAAGGCAGAGAGGA+CGG + chr5_4:52404044-52404063 Msa0857110:CDS 55.0%
TTTCCCGCCACTTCACTTCC+CGG - chr5_4:52404087-52404106 None:intergenic 55.0%
! GGAAGTGAAGTGGCGGGAAA+AGG + chr5_4:52404087-52404106 Msa0857110:CDS 55.0%
GGCGGGAAAAGGGTCAGATA+AGG + chr5_4:52404098-52404117 Msa0857110:CDS 55.0%
!! TGACGAAGTTGGCATTGGCG+AGG + chr5_4:52404145-52404164 Msa0857110:CDS 55.0%
CGTTTCCGGCTATTCTCCGG+TGG - chr5_4:52402525-52402544 None:intergenic 60.0%
! GGTGGCGGTGGTGAAACAGA+TGG - chr5_4:52402561-52402580 None:intergenic 60.0%
CGAGCCGTTCTTTGCCGGAA+CGG + chr5_4:52403173-52403192 Msa0857110:CDS 60.0%
GAGGAATGGCAACGCCGTTC+CGG - chr5_4:52403190-52403209 None:intergenic 60.0%
ACTTCACTTCCCGGAGACCC+CGG - chr5_4:52404078-52404097 None:intergenic 60.0%
GTCTCCGGGAAGTGAAGTGG+CGG + chr5_4:52404080-52404099 Msa0857110:CDS 60.0%
TCTCCGGGAAGTGAAGTGGC+GGG + chr5_4:52404081-52404100 Msa0857110:CDS 60.0%
CGTTTCCGGCTATTCTCCGG+TGG - chr5_4:52402525-52402544 None:intergenic 60.0%
! GGTGGCGGTGGTGAAACAGA+TGG - chr5_4:52402561-52402580 None:intergenic 60.0%
CGAGCCGTTCTTTGCCGGAA+CGG + chr5_4:52403173-52403192 Msa0857110:CDS 60.0%
GAGGAATGGCAACGCCGTTC+CGG - chr5_4:52403190-52403209 None:intergenic 60.0%
ACTTCACTTCCCGGAGACCC+CGG - chr5_4:52404078-52404097 None:intergenic 60.0%
GTCTCCGGGAAGTGAAGTGG+CGG + chr5_4:52404080-52404099 Msa0857110:CDS 60.0%
TCTCCGGGAAGTGAAGTGGC+GGG + chr5_4:52404081-52404100 Msa0857110:CDS 60.0%
CGACCGGAAGGTCGTGAGCT+TGG - chr5_4:52402462-52402481 None:intergenic 65.0%
ACCTTCCGGTCGCCGGAGTT+TGG + chr5_4:52402470-52402489 Msa0857110:CDS 65.0%
TCCAAACTCCGGCGACCGGA+AGG - chr5_4:52402474-52402493 None:intergenic 65.0%
GCCGGATCGACCCGATGAGT+TGG + chr5_4:52403314-52403333 Msa0857110:intron 65.0%
AGAGAGGACGGTGACTCCGC+CGG + chr5_4:52404056-52404075 Msa0857110:CDS 65.0%
GGGGTCTCCGGGAAGTGAAG+TGG + chr5_4:52404077-52404096 Msa0857110:CDS 65.0%
CGACCGGAAGGTCGTGAGCT+TGG - chr5_4:52402462-52402481 None:intergenic 65.0%
ACCTTCCGGTCGCCGGAGTT+TGG + chr5_4:52402470-52402489 Msa0857110:CDS 65.0%
TCCAAACTCCGGCGACCGGA+AGG - chr5_4:52402474-52402493 None:intergenic 65.0%
GCCGGATCGACCCGATGAGT+TGG + chr5_4:52403314-52403333 Msa0857110:intron 65.0%
AGAGAGGACGGTGACTCCGC+CGG + chr5_4:52404056-52404075 Msa0857110:CDS 65.0%
GGGGTCTCCGGGAAGTGAAG+TGG + chr5_4:52404077-52404096 Msa0857110:CDS 65.0%
GCTCACGACCTTCCGGTCGC+CGG + chr5_4:52402463-52402482 Msa0857110:CDS 70.0%
! TCGCATTCTCGCGGTGGCGG+TGG - chr5_4:52402573-52402592 None:intergenic 70.0%
GAGAGGACGGTGACTCCGCC+GGG + chr5_4:52404057-52404076 Msa0857110:CDS 70.0%
AGAGGACGGTGACTCCGCCG+GGG + chr5_4:52404058-52404077 Msa0857110:CDS 70.0%
TCACTTCCCGGAGACCCCGG+CGG - chr5_4:52404075-52404094 None:intergenic 70.0%
GCTCACGACCTTCCGGTCGC+CGG + chr5_4:52402463-52402482 Msa0857110:CDS 70.0%
! TCGCATTCTCGCGGTGGCGG+TGG - chr5_4:52402573-52402592 None:intergenic 70.0%
GAGAGGACGGTGACTCCGCC+GGG + chr5_4:52404057-52404076 Msa0857110:CDS 70.0%
AGAGGACGGTGACTCCGCCG+GGG + chr5_4:52404058-52404077 Msa0857110:CDS 70.0%
TCACTTCCCGGAGACCCCGG+CGG - chr5_4:52404075-52404094 None:intergenic 70.0%
GGTGACTCCGCCGGGGTCTC+CGG + chr5_4:52404065-52404084 Msa0857110:CDS 75.0%
GTGACTCCGCCGGGGTCTCC+GGG + chr5_4:52404066-52404085 Msa0857110:CDS 75.0%
GGTGACTCCGCCGGGGTCTC+CGG + chr5_4:52404065-52404084 Msa0857110:CDS 75.0%
GTGACTCCGCCGGGGTCTCC+GGG + chr5_4:52404066-52404085 Msa0857110:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 52402259 52404665 52402259 ID=Msa0857110;Name=Msa0857110
chr5_4 mRNA 52402259 52404665 52402259 ID=Msa0857110-mRNA-1;Parent=Msa0857110;Name=Msa0857110-mRNA-1;_AED=0.07;_eAED=0.07;_QI=140|1|1|1|1|1|4|435|389
chr5_4 exon 52402259 52402821 52402259 ID=Msa0857110-mRNA-1:exon:16363;Parent=Msa0857110-mRNA-1
chr5_4 exon 52402918 52403226 52402918 ID=Msa0857110-mRNA-1:exon:16364;Parent=Msa0857110-mRNA-1
chr5_4 exon 52403315 52403420 52403315 ID=Msa0857110-mRNA-1:exon:16365;Parent=Msa0857110-mRNA-1
chr5_4 exon 52403899 52404665 52403899 ID=Msa0857110-mRNA-1:exon:16366;Parent=Msa0857110-mRNA-1
chr5_4 five_prime_UTR 52402259 52402398 52402259 ID=Msa0857110-mRNA-1:five_prime_utr;Parent=Msa0857110-mRNA-1
chr5_4 CDS 52402399 52402821 52402399 ID=Msa0857110-mRNA-1:cds;Parent=Msa0857110-mRNA-1
chr5_4 CDS 52402918 52403226 52402918 ID=Msa0857110-mRNA-1:cds;Parent=Msa0857110-mRNA-1
chr5_4 CDS 52403315 52403420 52403315 ID=Msa0857110-mRNA-1:cds;Parent=Msa0857110-mRNA-1
chr5_4 CDS 52403899 52404230 52403899 ID=Msa0857110-mRNA-1:cds;Parent=Msa0857110-mRNA-1
chr5_4 three_prime_UTR 52404231 52404665 52404231 ID=Msa0857110-mRNA-1:three_prime_utr;Parent=Msa0857110-mRNA-1
Gene Sequence

>Msa0857110

ATGGCTGAGATTTGTTGTGGTGTAGTCGGAGAAGAAGAAACTCTTACTCTACCAGTTGAACCAAGCTCACGACCTTCCGGTCGCCGGAGTTTGGATTTACTACCGTTGAAATACATGGCAGATCCACCGGAGAATAGCCGGAAACGACAGAAGCTAGATCCATCTGTTTCACCACCGCCACCGCGAGAATGCGAAAACACAGTTGATAGCTGTGAATCAAGTACTGATGAAGAATCAAAGGAAAACGAAGTTGTTTTGAAAAACAAAGTTGTTGTTGTTGAAGAATGTTCTCCAAAATATGGAATAACATCAGTTTGTGGAAGGAGAAAAGAAATGGAAGACGCTGTTTCTGTTCATTCATCGTTTTGTAGCGAAAAACAAGATCATTTCTTCGGTGTTTACGACGGTCATGGTTGTTCACATGTTGCAACTATGTGTAAAGAAAGGTTGCATGAAATTGTTGAAGAAGAAAGAGAGAAAGAGAAGGTTGACTGGAAGTCAACGATGGAGAAGAGTTTTATTAGAATGGATGAAGAGGTGTTGAATTCTAGCAAGACGAAAAAGAGTTTCAGTTGTAAGTGTGAGCTTCAAACTCCTCATTGTGATGCTGTTGGTTCTACTGCTGTTGTTGCCGTTGTTACGCCGGAGAAAATCATTGTTTCTAACTGTGGTGATTCACGAGCCGTTCTTTGCCGGAACGGCGTTGCCATTCCTCTTTCCACCGATCATAAGCCGGATCGACCCGATGAGTTGGATCGGATTAATAAAGCTGGAGGACGTGTGATCTATTGGGATGGTGCAAGAGTGCTTGGAGTGTTGGCCATGTCAAGAGCTATTGGGGACAATTACTTGAAGCCATATGTTATATCGGAACCGGAGGTAACCATAACGGAGAGGAGTGACGAGGATGAATGTCTGATACTTGCCAGTGATGGCTTATGGGACGTGGTGCAAAACGACACGGCATGTAGGGTGGTGCAGATGTGTCTCAAGGCAGAGAGGACGGTGACTCCGCCGGGGTCTCCGGGAAGTGAAGTGGCGGGAAAAGGGTCAGATAAGGCGTGTTCGGATGCCTCAATTTTGTTGACGAAGTTGGCATTGGCGAGGAATAGTTCGGACAATGTTAGCGTGGTGGTTGTTGATTTGAGGAGAGATCAACGTCAACAGTAA
Protein sequence

>Msa0857110

MAEICCGVVGEEETLTLPVEPSSRPSGRRSLDLLPLKYMADPPENSRKRQKLDPSVSPPPPRECENTVDSCESSTDEESKENEVVLKNKVVVVEECSPKYGITSVCGRRKEMEDAVSVHSSFCSEKQDHFFGVYDGHGCSHVATMCKERLHEIVEEEREKEKVDWKSTMEKSFIRMDEEVLNSSKTKKSFSCKCELQTPHCDAVGSTAVVAVVTPEKIIVSNCGDSRAVLCRNGVAIPLSTDHKPDRPDELDRINKAGGRVIYWDGARVLGVLAMSRAIGDNYLKPYVISEPEVTITERSDEDECLILASDGLWDVVQNDTACRVVQMCLKAERTVTPPGSPGSEVAGKGSDKACSDASILLTKLALARNSSDNVSVVVVDLRRDQRQQ*