AlfalfaGEDB | Msa0831590

M. sativa cultivar zhongmu-4 / Msa0831590

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0831590	XP_024638968.1	99.487	390	2	0	1	390	1	390	0.0	811

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0831590	sp\|Q9ZQ31\|STY13_ARATH	35.366	328	186	5	39	366	88	389	3.71e-68	224

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0831590	G7K3Q2	99.487	390	2	0	1	390	1	390	0.0	811

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004840	Msa0831590	0.824156	9.403597e-54	-8.615850e-47
Msa0005270	Msa0831590	0.824935	6.163082e-54	-8.615850e-47
Msa0015090	Msa0831590	0.804817	1.800603e-49	-8.615850e-47
Msa0026870	Msa0831590	0.812308	4.525555e-51	-8.615850e-47
Msa0028660	Msa0831590	0.804509	2.087411e-49	-8.615850e-47
Msa0029850	Msa0831590	0.820071	8.322646e-53	-8.615850e-47
Msa0036140	Msa0831590	0.810044	1.401959e-50	-8.615850e-47
Msa0037840	Msa0831590	0.801130	1.040932e-48	-8.615850e-47
Msa0037880	Msa0831590	0.852170	5.503529e-61	-8.615850e-47
Msa0038870	Msa0831590	0.815712	8.030957e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0831590	MtrunA17_Chr5g0394681	99.487	390	2	0	1	390	1	390	0.0	811
Msa0831590	MtrunA17_Chr1g0205071	76.579	380	81	3	11	390	11	382	0.0	609
Msa0831590	MtrunA17_Chr4g0059181	63.291	395	104	3	33	390	2	392	0.0	532
Msa0831590	MtrunA17_Chr6g0450871	66.938	369	99	2	41	390	11	375	0.0	530
Msa0831590	MtrunA17_Chr3g0117811	65.753	365	110	2	37	390	3	363	0.0	525
Msa0831590	MtrunA17_Chr3g0090261	37.931	290	156	4	74	363	73	338	2.98e-72	230
Msa0831590	MtrunA17_Chr2g0282321	35.583	326	178	7	74	390	152	454	1.60e-64	213
Msa0831590	MtrunA17_Chr4g0075541	36.422	313	172	6	69	380	73	359	2.48e-63	207
Msa0831590	MtrunA17_Chr3g0117731	36.271	295	162	5	74	367	48	317	5.09e-63	206
Msa0831590	MtrunA17_Chr4g0047201	38.644	295	157	5	74	367	191	462	7.73e-63	209

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0831590	AT3G22750.1	79.255	376	74	2	16	390	6	378	0.0	630
Msa0831590	AT4G14780.1	75.000	368	88	1	23	390	1	364	0.0	590
Msa0831590	AT3G01490.1	62.843	401	94	4	41	390	15	411	0.0	528
Msa0831590	AT5G50000.1	63.660	388	107	2	33	390	2	385	0.0	524
Msa0831590	AT3G63260.1	63.780	381	132	4	15	390	12	391	0.0	510
Msa0831590	AT5G50000.2	61.875	320	88	2	33	322	2	317	3.33e-144	412
Msa0831590	AT3G01490.2	58.702	339	85	4	41	328	15	349	4.54e-142	408
Msa0831590	AT3G63260.2	62.620	313	111	4	15	322	12	323	5.23e-141	405
Msa0831590	AT4G31170.7	37.543	293	159	3	74	366	122	390	4.45e-72	231
Msa0831590	AT4G31170.6	37.543	293	159	3	74	366	122	390	4.45e-72	231

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Find 131 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCACTTAAGCAGGGTT+TGG	0.421914	5_4:-4537244	Msa0831590:CDS
AAACAGAAAGGAAGATTAAT+TGG	0.226860	5_4:-4534045	Msa0831590:three_prime_UTR
AAAGTATTATAATCAGAATT+TGG	0.257937	5_4:-4538451	None:intergenic
AAATCATATCTTTACTGCTT+TGG	0.324725	5_4:+4537312	None:intergenic
AACACAATGATCAAGGATTC+TGG	0.313379	5_4:+4534176	None:intergenic
AACATACCTTAAATCCAATT+TGG	0.244789	5_4:+4537166	None:intergenic
AACTGGAACCCTTGGATACA+TGG	0.452267	5_4:-4535051	Msa0831590:CDS
AAGGCCTAGAGAAGAATGGG+AGG	0.722391	5_4:-4537198	Msa0831590:CDS
AAGGTGTTGTCCGAGTGCAT+TGG	0.570264	5_4:-4534367	Msa0831590:CDS
AAGTACAGAAGACTGGAAAT+CGG	0.518400	5_4:-4534139	Msa0831590:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAAGGATCACAGAAAGAAA+CGG	+	chr5_4:4534016-4534035	None:intergenic	30.0%
AAGGCCATTGAAAAAAGAAA+AGG	+	chr5_4:4534360-4534379	None:intergenic	30.0%
AGTCAACAAAACAAATTGGT+TGG	-	chr5_4:4534635-4534654	Msa0831590:CDS	30.0%
TCATGTGAAGTCAATTGTTT+AGG	-	chr5_4:4534685-4534704	Msa0831590:intron	30.0%
TGTGATGAATTCAAAGATGA+AGG	-	chr5_4:4534949-4534968	Msa0831590:intron	30.0%
GTGATGAATTCAAAGATGAA+GGG	-	chr5_4:4534950-4534969	Msa0831590:intron	30.0%
ATTGACGTAGTCAAAAATCT+CGG	-	chr5_4:4535377-4535396	Msa0831590:CDS	30.0%
ATAACAGATCCAATCTATTG+CGG	+	chr5_4:4535580-4535599	None:intergenic	30.0%
GTAAATGCAGATGTGTAATT+CGG	+	chr5_4:4535765-4535784	None:intergenic	30.0%
TTACTTTAGTGACATTTGGA+TGG	+	chr5_4:4536657-4536676	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	4533856	4538460	4533856	ID=Msa0831590;Name=Msa0831590
chr5_4	mRNA	4533856	4538460	4533856	ID=Msa0831590-mRNA-1;Parent=Msa0831590;Name=Msa0831590-mRNA-1;_AED=0.21;_eAED=0.21;_QI=132\|1\|1\|1\|0.83\|0.71\|7\|347\|390
chr5_4	exon	4533856	4534409	4533856	ID=Msa0831590-mRNA-1:exon:1908;Parent=Msa0831590-mRNA-1
chr5_4	exon	4534526	4534660	4534526	ID=Msa0831590-mRNA-1:exon:1907;Parent=Msa0831590-mRNA-1
chr5_4	exon	4535043	4535217	4535043	ID=Msa0831590-mRNA-1:exon:1906;Parent=Msa0831590-mRNA-1
chr5_4	exon	4535309	4535517	4535309	ID=Msa0831590-mRNA-1:exon:1905;Parent=Msa0831590-mRNA-1
chr5_4	exon	4535644	4535765	4535644	ID=Msa0831590-mRNA-1:exon:1904;Parent=Msa0831590-mRNA-1
chr5_4	exon	4537105	4537458	4537105	ID=Msa0831590-mRNA-1:exon:1903;Parent=Msa0831590-mRNA-1
chr5_4	exon	4538358	4538460	4538358	ID=Msa0831590-mRNA-1:exon:1902;Parent=Msa0831590-mRNA-1
chr5_4	five_prime_UTR	4538358	4538460	4538358	ID=Msa0831590-mRNA-1:five_prime_utr;Parent=Msa0831590-mRNA-1
chr5_4	five_prime_UTR	4537430	4537458	4537430	ID=Msa0831590-mRNA-1:five_prime_utr;Parent=Msa0831590-mRNA-1
chr5_4	CDS	4537105	4537429	4537105	ID=Msa0831590-mRNA-1:cds;Parent=Msa0831590-mRNA-1
chr5_4	CDS	4535644	4535765	4535644	ID=Msa0831590-mRNA-1:cds;Parent=Msa0831590-mRNA-1
chr5_4	CDS	4535309	4535517	4535309	ID=Msa0831590-mRNA-1:cds;Parent=Msa0831590-mRNA-1
chr5_4	CDS	4535043	4535217	4535043	ID=Msa0831590-mRNA-1:cds;Parent=Msa0831590-mRNA-1
chr5_4	CDS	4534526	4534660	4534526	ID=Msa0831590-mRNA-1:cds;Parent=Msa0831590-mRNA-1
chr5_4	CDS	4534203	4534409	4534203	ID=Msa0831590-mRNA-1:cds;Parent=Msa0831590-mRNA-1
chr5_4	three_prime_UTR	4533856	4534202	4533856	ID=Msa0831590-mRNA-1:three_prime_utr;Parent=Msa0831590-mRNA-1

Gene Sequence

>Msa0831590

ATGGATTTTGAAGGTGAAGGTGTTAGGACACCAAAGGTGGAATTGGAAGAAGGAGCAAAAAGTGTGATGAATTCAAAGATGAAGGGTGCTGGAAACCAAAGCAGTAAAGATATGATTTTCAGAGCTGATAGAATTGATCTCAAGAATTTGGATGCTCAATTGGAAAAGCACTTAAGCAGGGTTTGGTCAAGAAACACCAATGAGACAAAAAGGCCTAGAGAAGAATGGGAGGTTGAGTTGGCCAAATTGGATTTAAGGTATGTTGTTGCTCATGGTGCTTATGGTACTGTCTATAGAGGCACATATGATACTCAAGATGTTGCAGTGAAAGTGTTGGATTGGGGTGAGGATGGTGCTGCCACGGCTGCAGAAACTGCCGCTTTACGTGCATCTTTTAGGCAGGAGGTTGCCGTCTGGCACAAACTCGACCATCCAAATGTCACTAAATTTGTTGGAGCTTCAATGGGAACTTCAAATCTCAAGATTCCTACAAAAAACTCTTCAACCAACAATCAAGAGAGCCTTCCTTCTAGGGCATGTTGCGTCATTGTCGAGTTTCTTCCTGGTGGAACACTGAAGCAATACTTGATAAGAAATAGGCGGAAGAAACTTGCGTATAGGATTGTGGTTCAGCTCGCTTTGGACCTCTCCAGAGGTCTTAGCTATCTACATTCGGAGAAGATTGTTCACCGTGATGTTAAGACGGAGAATATGTTGCTAGATGGTAACCGGAATCTAAAGATAGCTGATTTTGGAGTTGCTCGGGTTGAAGCTTTGAATCCATGTGACATGACTGGTGAAACTGGAACCCTTGGATACATGGCTCCTGAGGTTTTGGATGGTAAACCTTACAACAGGACATGTGATGTATACAGCTTTGGCATTTGCTTGTGGGAAATTTATTGCTGTGATATGCCTTATCCAGATCTAAGCTTTGCTGATGTGTCTTCCGCTGTCGTTCGTCAGAATTTACGACCAGAAATTCCAAGGTGTTGTCCGAGTGCATTGGCGAACATCATGCGGAAATGCTGGGATGCGAATCCGATCAAACGTCCGGAAATGAAGGATGTGGTGATAATGCTAGAAGCACTGGATACAAGCAAAGGTGGTGGAATGATTCCTGAAGATCAAAGTTCAGGTTGCTTTTGTTTTGCACCTCAAAGAGGTCCTTAA

Protein sequence

>Msa0831590

MDFEGEGVRTPKVELEEGAKSVMNSKMKGAGNQSSKDMIFRADRIDLKNLDAQLEKHLSRVWSRNTNETKRPREEWEVELAKLDLRYVVAHGAYGTVYRGTYDTQDVAVKVLDWGEDGAATAAETAALRASFRQEVAVWHKLDHPNVTKFVGASMGTSNLKIPTKNSSTNNQESLPSRACCVIVEFLPGGTLKQYLIRNRRKKLAYRIVVQLALDLSRGLSYLHSEKIVHRDVKTENMLLDGNRNLKIADFGVARVEALNPCDMTGETGTLGYMAPEVLDGKPYNRTCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVRQNLRPEIPRCCPSALANIMRKCWDANPIKRPEMKDVVIMLEALDTSKGGGMIPEDQSSGCFCFAPQRGP*