AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0756310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756310 MtrunA17_Chr5g0401611 98.638 514 7 0 1 514 1 514 0.0 1023
Msa0756310 MtrunA17_Chr4g0053701 84.708 497 70 1 18 514 25 515 0.0 848
Msa0756310 MtrunA17_Chr3g0134491 77.282 471 101 1 24 494 44 508 0.0 753
Msa0756310 MtrunA17_Chr8g0347551 67.223 479 153 1 16 494 51 525 0.0 679
Msa0756310 MtrunA17_Chr3g0124991 43.077 455 235 8 52 490 34 480 1.46e-107 330
Msa0756310 MtrunA17_Chr2g0333811 41.667 456 244 8 51 491 44 492 4.36e-106 327
Msa0756310 MtrunA17_Chr3g0124971 40.162 493 268 9 16 490 4 487 2.57e-100 312
Msa0756310 MtrunA17_Chr4g0012701 77.215 79 17 1 1 79 1 78 1.47e-29 110
Msa0756310 MtrunA17_Chr7g0264231 26.824 425 257 14 61 466 38 427 1.68e-26 114
Msa0756310 MtrunA17_Chr2g0309271 26.836 354 237 9 97 444 3 340 4.17e-26 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756310 AT2G23150.1 81.933 476 85 1 25 500 27 501 0.0 805
Msa0756310 AT5G67330.1 76.087 506 115 2 2 507 5 504 0.0 778
Msa0756310 AT1G47240.1 78.243 478 100 1 17 494 34 507 0.0 777
Msa0756310 AT4G18790.1 67.775 481 148 1 11 491 33 506 0.0 665
Msa0756310 AT1G15960.1 42.619 420 227 7 51 463 34 446 8.63e-105 323
Msa0756310 AT1G80830.1 42.619 420 227 7 51 463 42 454 1.96e-101 315
Msa0756310 AT1G80830.2 42.619 420 227 7 51 463 42 454 1.96e-101 315
Msa0756310 AT5G03280.1 25.389 386 265 9 61 439 24 393 3.51e-29 122

Find 148 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATAACTTGCAACGATTC+TGG 0.207319 5_2:+10513664 Msa0756310:three_prime_UTR
TCTTAACATCATAGACTTAA+AGG 0.227497 5_2:-10513813 None:intergenic
TATTCCCAATCCTGTATATA+TGG 0.228743 5_2:+10512139 Msa0756310:CDS
CTCTCATTTGCATGGATGTT+TGG 0.230544 5_2:+10511633 Msa0756310:CDS
TTCCTCTTTCTTGAGAATTA+TGG 0.232223 5_2:+10511561 Msa0756310:CDS
GTAATGGCCTTGTTCCTCTT+TGG 0.242402 5_2:+10510361 Msa0756310:CDS
CTTGGGCAAGGATTGTTCTT+TGG 0.245807 5_2:+10510262 Msa0756310:CDS
TGCCGTTCTTATTGCTATAA+TGG 0.260123 5_2:+10511608 Msa0756310:CDS
AGTGGTGGTACCTTATTTAT+TGG 0.283497 5_2:+10513690 Msa0756310:three_prime_UTR
TATACATGCATTATATTTGT+AGG 0.299436 5_2:-10513887 None:intergenic
TAATGGCCTTGTTCCTCTTT+GGG 0.305235 5_2:+10510362 Msa0756310:CDS
CGCTGTTATGGCTTCTTATG+TGG 0.313493 5_2:+10510142 Msa0756310:CDS
TCTGATATTCAAGAGGTTAT+AGG 0.318147 5_2:+10510312 Msa0756310:CDS
CTGATATTCAAGAGGTTATA+GGG 0.327415 5_2:+10510313 Msa0756310:CDS
TAGGGAGTGCTATTGCTATT+AGG 0.333861 5_2:+10510331 Msa0756310:CDS
AGATCTCCTTCCAAGTTTCC+AGG 0.335579 5_2:-10510093 None:intergenic
AAGCGTGTTTAATTTGATAT+TGG 0.345752 5_2:-10513943 None:intergenic
CTTCAATCTGGTGCAATTGC+TGG 0.345914 5_2:+10510114 Msa0756310:CDS
TTGCTGGGTATTCGCTGTTA+TGG 0.347044 5_2:+10510130 Msa0756310:CDS
ATTGATTCCCTTGCTTTGTT+TGG 0.349044 5_2:+10512401 Msa0756310:CDS
GAATTATGGTGTGAGGAAAT+TGG 0.350066 5_2:+10511575 Msa0756310:CDS
TTCCTGGCTTGTGGCTGCTC+TGG 0.351790 5_2:+10513294 Msa0756310:CDS
GACAAATATATTAATAATAA+AGG 0.352339 5_2:-10512016 None:intergenic
TCCTGTATATATGGGGTATT+GGG 0.357893 5_2:+10512148 Msa0756310:CDS
GTACAGACAACCAATAAATA+AGG 0.360066 5_2:-10513700 None:intergenic
GGTTTCAAAGGAGCAAATAA+TGG 0.360857 5_2:+10512422 Msa0756310:CDS
AACAGCTTGTTGTATAGTTC+TGG 0.368091 5_2:-10511845 None:intergenic
TCTGAAAAGGTTGTCGTTGT+TGG 0.368268 5_2:+10509946 Msa0756310:CDS
TAATAACTTGCAACGATTCT+GGG 0.370147 5_2:+10513665 Msa0756310:three_prime_UTR
GCTCTGGTGATAGTGATAAA+TGG 0.371973 5_2:+10513310 Msa0756310:CDS
ACGTAACGGAGCTTGAAATA+AGG 0.375796 5_2:-10513432 None:intergenic
TAGCGCAATGGTGGACTCTA+TGG 0.377756 5_2:-10511986 None:intergenic
CAGTACCTTCAGGAGAAGTA+TGG 0.378008 5_2:+10512108 Msa0756310:CDS
CTTGCTTTGTTTGGTTTCAA+AGG 0.383193 5_2:+10512410 Msa0756310:CDS
ATCCTGTATATATGGGGTAT+TGG 0.391603 5_2:+10512147 Msa0756310:CDS
CTTATGTGGGCTACAGCTAT+GGG 0.394453 5_2:+10510156 Msa0756310:CDS
ACAAATAATAAGCATTAGTA+TGG 0.398746 5_2:-10513637 None:intergenic
TGTTGCTACGGGGAGACATT+TGG 0.399325 5_2:+10510212 Msa0756310:CDS
ATGACTGAAGTTGCTTTGAT+TGG 0.400536 5_2:+10510288 Msa0756310:CDS
GTTTCAAAGGAGCAAATAAT+GGG 0.401551 5_2:+10512423 Msa0756310:CDS
GCAGTAACATACCAAGTTAC+TGG 0.403560 5_2:-10513749 None:intergenic
CGCTTACGATTCATCTGAAA+AGG 0.410529 5_2:+10509933 Msa0756310:CDS
TTTCAATACAGACCATTTCC+TGG 0.412146 5_2:+10513278 Msa0756310:intron
TCTTATGTGGGCTACAGCTA+TGG 0.412271 5_2:+10510155 Msa0756310:CDS
TTAGTATGGTCAATAAGAAT+AGG 0.413825 5_2:-10513623 None:intergenic
CAACAAGCTGTTGGAGTTGT+TGG 0.415507 5_2:+10511856 Msa0756310:CDS
GGCCTTGTTCCTCTTTGGGC+TGG 0.416642 5_2:+10510366 Msa0756310:CDS
ATGGTACTGAAATAGCAAAT+AGG 0.419910 5_2:+10512064 Msa0756310:CDS
ATAATGGGCACTTTCAAGAT+TGG 0.422284 5_2:+10512438 Msa0756310:CDS
AGCAAGGGAATCAATGCAAA+AGG 0.422846 5_2:-10512393 None:intergenic
ATTCCCAATCCTGTATATAT+GGG 0.424368 5_2:+10512140 Msa0756310:CDS
ATAGTTCTGGAGCTAAGTTT+AGG 0.430966 5_2:-10511832 None:intergenic
CTTAACATCATAGACTTAAA+GGG 0.432390 5_2:-10513812 None:intergenic
GATGGTGTTGATGTTCTTGT+TGG 0.436854 5_2:+10511669 Msa0756310:CDS
TTCGTAGGCTTCTTCTTCGT+CGG 0.440294 5_2:-10509971 None:intergenic
TGCTCTTGTTCAATCCAGGC+AGG 0.441118 5_2:+10511915 Msa0756310:CDS
TACCCCATATATACAGGATT+GGG 0.442489 5_2:-10512143 None:intergenic
AAATGCAGGGCAGTACCTTC+AGG 0.445908 5_2:+10512098 Msa0756310:CDS
CATAGTTTCTTCCATGAAAA+CGG 0.452161 5_2:-10510024 None:intergenic
TTGTCATTACTGCTTTAGAT+TGG 0.452490 5_2:+10510391 Msa0756310:CDS
CAGTGTAGATGCCAGTAACT+TGG 0.453546 5_2:+10513738 Msa0756310:three_prime_UTR
AGCAGCCACAAGCCAGGAAA+TGG 0.465152 5_2:-10513290 None:intergenic
GGTCAGAGTAGCACTATTAC+TGG 0.465242 5_2:+10512183 Msa0756310:CDS
GCAAGGTTAGGTGTTGCTAC+GGG 0.467938 5_2:+10510201 Msa0756310:CDS
TAGTATGGTCAATAAGAATA+GGG 0.470343 5_2:-10513622 None:intergenic
GGATGAGGGCGTTGATTACT+CGG 0.472145 5_2:+10512262 Msa0756310:CDS
TATTGGACGTGAAAAGAAAC+AGG 0.472918 5_2:-10513926 None:intergenic
GCTGTTATGGCTTCTTATGT+GGG 0.476897 5_2:+10510143 Msa0756310:CDS
CACCATAATTCTCAAGAAAG+AGG 0.481932 5_2:-10511563 None:intergenic
ATTCTGCTCTTGTTCAATCC+AGG 0.482576 5_2:+10511911 Msa0756310:CDS
CTATGGTTATTCAGTGGACC+AGG 0.490109 5_2:+10510042 Msa0756310:CDS
TGTCACAACTGTGTTTGCTA+AGG 0.491481 5_2:+10512035 Msa0756310:CDS
ACCCAATACCCCATATATAC+AGG 0.494023 5_2:-10512149 None:intergenic
TACGAAGCTGACGTGGACTC+TGG 0.498286 5_2:+10509988 Msa0756310:CDS
ACAAGAACATCAACACCATC+TGG 0.500462 5_2:-10511666 None:intergenic
GTCACAACTGTGTTTGCTAA+GGG 0.500490 5_2:+10512036 Msa0756310:CDS
TTGGAAGGAGATCTTCAATC+TGG 0.500957 5_2:+10510102 Msa0756310:CDS
AGCAAGGTTAGGTGTTGCTA+CGG 0.506542 5_2:+10510200 Msa0756310:CDS
GTGGATAATGATTCGCGTTG+CGG 0.508398 5_2:-10509853 None:intergenic
ATTCCTCAAAATCATGAAGT+AGG 0.509274 5_2:+10513559 Msa0756310:three_prime_UTR
TTCAATCTGGTGCAATTGCT+GGG 0.512314 5_2:+10510115 Msa0756310:CDS
ATACCCCATATATACAGGAT+TGG 0.515369 5_2:-10512144 None:intergenic
GTTGTTCTAACAGAGGTTGT+TGG 0.516654 5_2:-10509888 None:intergenic
TTGGATCCTGGAAACTTGGA+AGG 0.517550 5_2:+10510087 Msa0756310:CDS
AGGATCGGTCTTGTAAATGC+AGG 0.518450 5_2:+10512084 Msa0756310:CDS
ACTATTACTGGTACATATGC+TGG 0.527712 5_2:+10512195 Msa0756310:CDS
GTAGAGATGAGTATCCTACT+TGG 0.535483 5_2:+10510244 Msa0756310:CDS
CAAGATTGGCTCTGTCCTCA+AGG 0.536538 5_2:+10512452 Msa0756310:CDS
ATAAGTGCAACTATCATAGT+CGG 0.536590 5_2:-10512300 None:intergenic
TTGCAACGATTCTGGGGAAG+TGG 0.537276 5_2:+10513672 Msa0756310:three_prime_UTR
AGAGTCCACGTCAGCTTCGT+AGG 0.542462 5_2:-10509986 None:intergenic
TAATGGCTCTCTCATTTGCA+TGG 0.545987 5_2:+10511625 Msa0756310:CDS
TAAGTGCAACTATCATAGTC+GGG 0.551179 5_2:-10512299 None:intergenic
GATCGAGTTAATCTTTGCCA+AGG 0.551708 5_2:-10513460 None:intergenic
ACAGACCATTTCCTGGCTTG+TGG 0.551762 5_2:+10513285 Msa0756310:intron
GCTATACTCATCAGAAAACC+TGG 0.552760 5_2:-10510060 None:intergenic
TCTTGTTGTTGTTCTAACAG+AGG 0.555158 5_2:-10509895 None:intergenic
AAAACTATAAATTATTCTTG+TGG 0.556557 5_2:-10509670 None:intergenic
TTAGAACAACAACAAGAAGA+AGG 0.558025 5_2:+10509901 Msa0756310:CDS
GGTATTGGGTTACTAGCAGC+TGG 0.560371 5_2:+10512162 Msa0756310:CDS
CACCAGAGCAGCCACAAGCC+AGG 0.561920 5_2:-10513296 None:intergenic
AGAACTATACAACAAGCTGT+TGG 0.566192 5_2:+10511847 Msa0756310:CDS
CACTGCTCCACTCACTTCAG+AGG 0.566376 5_2:-10513356 None:intergenic
GCAAGGGAATCAATGCAAAA+GGG 0.569154 5_2:-10512392 None:intergenic
TTCTTGAGAATTATGGTGTG+AGG 0.571214 5_2:+10511568 Msa0756310:CDS
TAGAGATGAGTATCCTACTT+GGG 0.572208 5_2:+10510245 Msa0756310:CDS
CTGTAAAATTTGATATACAA+TGG 0.572483 5_2:+10513776 Msa0756310:three_prime_UTR
AGAACAATCCTTGCCCAAGT+AGG 0.575207 5_2:-10510258 None:intergenic
CTTTGAAACCAAACAAAGCA+AGG 0.576077 5_2:-10512409 None:intergenic
GGAGACAACTAGCGCAATGG+TGG 0.598232 5_2:-10511995 None:intergenic
CGCCTCCATACTTCTCCTGA+AGG 0.601191 5_2:-10512113 None:intergenic
CACCAGCCCAAAGAGGAACA+AGG 0.602260 5_2:-10510368 None:intergenic
ACTTATATTTGATTCTTCAG+AGG 0.602962 5_2:+10512317 Msa0756310:CDS
ATGAGTATCCTACTTGGGCA+AGG 0.603524 5_2:+10510250 Msa0756310:CDS
ATATGCTGGACAATTCATCA+TGG 0.605595 5_2:+10512209 Msa0756310:CDS
AATAACTTGCAACGATTCTG+GGG 0.609073 5_2:+10513666 Msa0756310:three_prime_UTR
GAACTAGTCACTGTCGAGTG+TGG 0.612021 5_2:-10509791 None:intergenic
GATTGGTTCTGATATTCAAG+AGG 0.612261 5_2:+10510305 Msa0756310:CDS
CAACGATTCTGGGGAAGTGG+TGG 0.615761 5_2:+10513675 Msa0756310:three_prime_UTR
TTGTTGGTGAGACATGGTGG+TGG 0.619267 5_2:-10509872 None:intergenic
TTATGTGGGCTACAGCTATG+GGG 0.620688 5_2:+10510157 Msa0756310:CDS
CAGAGGTTGTTGGTGAGACA+TGG 0.620954 5_2:-10509878 None:intergenic
AGAAGCCTACGAAGCTGACG+TGG 0.623584 5_2:+10509981 Msa0756310:CDS
GGATCGGTCTTGTAAATGCA+GGG 0.624462 5_2:+10512085 Msa0756310:CDS
AGCCATTATAGCAATAAGAA+CGG 0.624673 5_2:-10511610 None:intergenic
CTTCAGGAGAAGTATGGAGG+CGG 0.626449 5_2:+10512114 Msa0756310:CDS
GCTGGACAATTCATCATGGG+TGG 0.626939 5_2:+10512213 Msa0756310:CDS
TATGCTGGACAATTCATCAT+GGG 0.627133 5_2:+10512210 Msa0756310:CDS
ATGACAACACCAGCCCAAAG+AGG 0.629953 5_2:-10510375 None:intergenic
AATTGAGAGCTTCTTGAACG+CGG 0.634426 5_2:-10511957 None:intergenic
ACTGAAATAGCAAATAGGAT+CGG 0.636009 5_2:+10512069 Msa0756310:CDS
AAAGGAGACAACTAGCGCAA+TGG 0.641305 5_2:-10511998 None:intergenic
AAGAAACTATGGTTATTCAG+TGG 0.641832 5_2:+10510036 Msa0756310:CDS
TTCCCAATCCTGTATATATG+GGG 0.642639 5_2:+10512141 Msa0756310:CDS
TTTGAAACCAAACAAAGCAA+GGG 0.646605 5_2:-10512408 None:intergenic
TACCTTCAGGAGAAGTATGG+AGG 0.648168 5_2:+10512111 Msa0756310:CDS
AGTTTCTTCCATGAAAACGG+TGG 0.652794 5_2:-10510021 None:intergenic
TTGCCAAGGTGAAAACGTAA+CGG 0.654921 5_2:-10513446 None:intergenic
GAATGCAAGAATACATTGTG+AGG 0.660682 5_2:-10511892 None:intergenic
CAAGGTTAGGTGTTGCTACG+GGG 0.666495 5_2:+10510202 Msa0756310:CDS
GTTGACTGCTGAACTTTGCG+TGG 0.669251 5_2:-10513533 None:intergenic
TTTGGTGAAGCAAAGCCAGA+TGG 0.673749 5_2:+10511651 Msa0756310:CDS
GGCTGCTCAACTCTCCGTGG+TGG 0.674172 5_2:-10513494 None:intergenic
CGTGGTAGCTACTATCTCTG+TGG 0.702912 5_2:-10513515 None:intergenic
TGTGGCTGCTCAACTCTCCG+TGG 0.704473 5_2:-10513497 None:intergenic
ATCAAAGACAGTTACCACCA+CGG 0.705378 5_2:+10513480 Msa0756310:CDS
AGGTTGTTGGTGAGACATGG+TGG 0.723150 5_2:-10509875 None:intergenic
TGTTGTGTGCGTAATAACAG+CGG 0.729452 5_2:+10513387 Msa0756310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTTCATTTACTTTAAA+TGG + chr5_2:10510414-10510433 Msa0756310:intron 10.0%
!!! AAATTATCTTATTATTGTTT+TGG + chr5_2:10510680-10510699 Msa0756310:intron 10.0%
!!! ATTTGAAATTCAAATTAATA+TGG - chr5_2:10511261-10511280 None:intergenic 10.0%
!!! TTAAATATTTAACTTTTATG+TGG + chr5_2:10511517-10511536 Msa0756310:intron 10.0%
!! GACAAATATATTAATAATAA+AGG - chr5_2:10512019-10512038 None:intergenic 10.0%
!!! TAAATAATTTTTTTTTCTCA+GGG + chr5_2:10513858-10513877 Msa0756310:three_prime_UTR 10.0%
!!! TTTTTTACAAATTTCAGTTT+CGG + chr5_2:10510445-10510464 Msa0756310:intron 15.0%
!!! GTAAATAATTTTTTTTTCTC+AGG + chr5_2:10513857-10513876 Msa0756310:three_prime_UTR 15.0%
!!! GTTTTGTTTTCTGTATAATT+GGG - chr5_2:10509723-10509742 None:intergenic 20.0%
!!! TGTTTTGTTTTCTGTATAAT+TGG - chr5_2:10509724-10509743 None:intergenic 20.0%
!! AAAAAGATAGGTTTGAAAAT+TGG - chr5_2:10509816-10509835 None:intergenic 20.0%
!!! TCTTATTATTGTTTTGGAAT+TGG + chr5_2:10510686-10510705 Msa0756310:intron 20.0%
!!! TTTTCTTGATATTATTACAG+TGG + chr5_2:10510710-10510729 Msa0756310:intron 20.0%
!! TTTCTTGATATTATTACAGT+GGG + chr5_2:10510711-10510730 Msa0756310:intron 20.0%
!! TTAATTGAATCAATTCATGA+AGG - chr5_2:10511184-10511203 None:intergenic 20.0%
!!! TGAATTTGAAGTTGAAAAAA+TGG + chr5_2:10512241-10512260 Msa0756310:CDS 20.0%
!! TTGATAAAAATATTAACGAG+GGG - chr5_2:10513134-10513153 None:intergenic 20.0%
!!! GTTGATAAAAATATTAACGA+GGG - chr5_2:10513135-10513154 None:intergenic 20.0%
!! ACAAATAATAAGCATTAGTA+TGG - chr5_2:10513640-10513659 None:intergenic 20.0%
!! CTGTAAAATTTGATATACAA+TGG + chr5_2:10513776-10513795 Msa0756310:three_prime_UTR 20.0%
!!! ATGTTAAGAGTGTTATTTTT+AGG + chr5_2:10513827-10513846 Msa0756310:three_prime_UTR 20.0%
!! TATACATGCATTATATTTGT+AGG - chr5_2:10513890-10513909 None:intergenic 20.0%
! CTTATGTGTTGTAAAAAGAT+AGG - chr5_2:10509828-10509847 None:intergenic 25.0%
! ACCAAAAAAAAAGAAACTCA+GGG - chr5_2:10510542-10510561 None:intergenic 25.0%
! AACCAAAAAAAAAGAAACTC+AGG - chr5_2:10510543-10510562 None:intergenic 25.0%
!!! GAGTTTCTTTTTTTTTGGTT+TGG + chr5_2:10510543-10510562 Msa0756310:intron 25.0%
!!! AGTGTTTTTTAGTTGTACTA+TGG + chr5_2:10510738-10510757 Msa0756310:intron 25.0%
! CTTTCTTAGATTCATTTCTT+TGG + chr5_2:10511308-10511327 Msa0756310:intron 25.0%
! CATTATTAAGTCAATTTCCT+AGG + chr5_2:10511742-10511761 Msa0756310:intron 25.0%
! ACTTATATTTGATTCTTCAG+AGG + chr5_2:10512317-10512336 Msa0756310:CDS 25.0%
!!! CATTAGATGTTTTGAATGAA+TGG + chr5_2:10512343-10512362 Msa0756310:CDS 25.0%
!! TATATGATTCCTTTGCATTT+TGG + chr5_2:10512475-10512494 Msa0756310:intron 25.0%
! GACATATATGAATATGCAAA+TGG - chr5_2:10512553-10512572 None:intergenic 25.0%
!! TCTGAAATTGTGTTTATGAA+TGG - chr5_2:10512663-10512682 None:intergenic 25.0%
! GTCTCATATTGAATGATATA+AGG - chr5_2:10512686-10512705 None:intergenic 25.0%
! GGACTTATTTAATCAAATGT+GGG + chr5_2:10512893-10512912 Msa0756310:intron 25.0%
! TGATAAAAATATTAACGAGG+GGG - chr5_2:10513133-10513152 None:intergenic 25.0%
!! CGTTGATAAAAATATTAACG+AGG - chr5_2:10513136-10513155 None:intergenic 25.0%
!!! CGTTAATATTTTTATCAACG+TGG + chr5_2:10513136-10513155 Msa0756310:intron 25.0%
!!! AGTTTGATGCTTTGATTTTT+TGG + chr5_2:10513217-10513236 Msa0756310:intron 25.0%
! TAGTATGGTCAATAAGAATA+GGG - chr5_2:10513625-10513644 None:intergenic 25.0%
! TTAGTATGGTCAATAAGAAT+AGG - chr5_2:10513626-10513645 None:intergenic 25.0%
! CTTAACATCATAGACTTAAA+GGG - chr5_2:10513815-10513834 None:intergenic 25.0%
! TCTTAACATCATAGACTTAA+AGG - chr5_2:10513816-10513835 None:intergenic 25.0%
! TTTTCTGTATAATTGGGTTC+TGG - chr5_2:10509717-10509736 None:intergenic 30.0%
TTAGAACAACAACAAGAAGA+AGG + chr5_2:10509901-10509920 Msa0756310:CDS 30.0%
CATAGTTTCTTCCATGAAAA+CGG - chr5_2:10510027-10510046 None:intergenic 30.0%
AAGAAACTATGGTTATTCAG+TGG + chr5_2:10510036-10510055 Msa0756310:CDS 30.0%
! TCTGATGAGTATAGCATTTT+TGG + chr5_2:10510068-10510087 Msa0756310:CDS 30.0%
TCTGATATTCAAGAGGTTAT+AGG + chr5_2:10510312-10510331 Msa0756310:CDS 30.0%
CTGATATTCAAGAGGTTATA+GGG + chr5_2:10510313-10510332 Msa0756310:CDS 30.0%
!! GCTATTAGGATTTTGAGTAA+TGG + chr5_2:10510345-10510364 Msa0756310:CDS 30.0%
! TTGTCATTACTGCTTTAGAT+TGG + chr5_2:10510391-10510410 Msa0756310:CDS 30.0%
! CGGTAAGTTTCATTTAAAGT+AGG + chr5_2:10510465-10510484 Msa0756310:intron 30.0%
CAAAAAAAAAGAAACTCAGG+GGG - chr5_2:10510540-10510559 None:intergenic 30.0%
CCAAAAAAAAAGAAACTCAG+GGG - chr5_2:10510541-10510560 None:intergenic 30.0%
! CGAAGTATCTTCTTTGATTA+AGG + chr5_2:10510643-10510662 Msa0756310:intron 30.0%
! ATCAAGTTTAGAACCTAAAC+TGG - chr5_2:10510865-10510884 None:intergenic 30.0%
!! GTCTTTAGAGTTTCTTGTTA+TGG + chr5_2:10510908-10510927 Msa0756310:intron 30.0%
! TAGAGTTTCTTGTTATGGAT+TGG + chr5_2:10510913-10510932 Msa0756310:intron 30.0%
!!! TGAACCATATGTTTTGATAG+GGG - chr5_2:10510948-10510967 None:intergenic 30.0%
!!! CTGAACCATATGTTTTGATA+GGG - chr5_2:10510949-10510968 None:intergenic 30.0%
!!! ACTGAACCATATGTTTTGAT+AGG - chr5_2:10510950-10510969 None:intergenic 30.0%
CATATGCACAAATTGAAGTT+AGG - chr5_2:10511002-10511021 None:intergenic 30.0%
AGAACAACTCTACATTCAAA+AGG - chr5_2:10511100-10511119 None:intergenic 30.0%
ACTCGTATATTACTTGATGA+AGG + chr5_2:10511132-10511151 Msa0756310:intron 30.0%
CTCGTATATTACTTGATGAA+GGG + chr5_2:10511133-10511152 Msa0756310:intron 30.0%
!! ATCTAAGAAAGCACTCTAAA+AGG - chr5_2:10511299-10511318 None:intergenic 30.0%
CATGGATTCATCAATATTTC+TGG - chr5_2:10511410-10511429 None:intergenic 30.0%
AAAAGCAAGACAATTGATCA+TGG - chr5_2:10511428-10511447 None:intergenic 30.0%
!!! ATTGTCTTGCTTTTTCGTTT+TGG + chr5_2:10511434-10511453 Msa0756310:intron 30.0%
TTTGGCATTTAAGAAGCTAT+TGG + chr5_2:10511452-10511471 Msa0756310:intron 30.0%
AAGAAAGAGGAAAATGAAAC+TGG - chr5_2:10511553-10511572 None:intergenic 30.0%
TTCCTCTTTCTTGAGAATTA+TGG + chr5_2:10511561-10511580 Msa0756310:CDS 30.0%
AGCCATTATAGCAATAAGAA+CGG - chr5_2:10511613-10511632 None:intergenic 30.0%
! TTTTGCCTTTGTAGGTATTT+TGG + chr5_2:10511807-10511826 Msa0756310:intron 30.0%
! ATGGTACTGAAATAGCAAAT+AGG + chr5_2:10512064-10512083 Msa0756310:CDS 30.0%
ACTGAAATAGCAAATAGGAT+CGG + chr5_2:10512069-10512088 Msa0756310:CDS 30.0%
TATTCCCAATCCTGTATATA+TGG + chr5_2:10512139-10512158 Msa0756310:CDS 30.0%
ATTCCCAATCCTGTATATAT+GGG + chr5_2:10512140-10512159 Msa0756310:CDS 30.0%
TGAAGTTGAAAAAATGGATG+AGG + chr5_2:10512247-10512266 Msa0756310:CDS 30.0%
GAAGTTGAAAAAATGGATGA+GGG + chr5_2:10512248-10512267 Msa0756310:CDS 30.0%
ATAAGTGCAACTATCATAGT+CGG - chr5_2:10512303-10512322 None:intergenic 30.0%
! TTTGAAACCAAACAAAGCAA+GGG - chr5_2:10512411-10512430 None:intergenic 30.0%
GTTTCAAAGGAGCAAATAAT+GGG + chr5_2:10512423-10512442 Msa0756310:CDS 30.0%
GTTATCCATTGTCAGTTTAT+TGG + chr5_2:10512515-10512534 Msa0756310:intron 30.0%
ATGTAAAGAGTCGTAACATT+TGG + chr5_2:10512584-10512603 Msa0756310:intron 30.0%
TGTAAAGAGTCGTAACATTT+GGG + chr5_2:10512585-10512604 Msa0756310:intron 30.0%
GAAATTGTGTTTATGAATGG+TGG - chr5_2:10512660-10512679 None:intergenic 30.0%
TCCACTACCATGTTAAAATT+TGG + chr5_2:10512803-10512822 Msa0756310:intron 30.0%
CCACTACCATGTTAAAATTT+GGG + chr5_2:10512804-10512823 Msa0756310:intron 30.0%
! ACCATGTTAAAATTTGGGTT+TGG + chr5_2:10512809-10512828 Msa0756310:intron 30.0%
GGGACTTATTTAATCAAATG+TGG + chr5_2:10512892-10512911 Msa0756310:intron 30.0%
AGATGGAATAGGTCTATATT+GGG - chr5_2:10512949-10512968 None:intergenic 30.0%
AAGATGGAATAGGTCTATAT+TGG - chr5_2:10512950-10512969 None:intergenic 30.0%
GATAATTTCTCTTACCTAAG+TGG + chr5_2:10513038-10513057 Msa0756310:intron 30.0%
!! ATTTTTATCAACGTGGATTG+AGG + chr5_2:10513143-10513162 Msa0756310:intron 30.0%
TGGTCTGTATTGAAATCATA+AGG - chr5_2:10513273-10513292 None:intergenic 30.0%
ATTCCTCAAAATCATGAAGT+AGG + chr5_2:10513559-10513578 Msa0756310:three_prime_UTR 30.0%
! TAATAACTTGCAACGATTCT+GGG + chr5_2:10513665-10513684 Msa0756310:three_prime_UTR 30.0%
GTACAGACAACCAATAAATA+AGG - chr5_2:10513703-10513722 None:intergenic 30.0%
!! TCTTGTTGTTGTTCTAACAG+AGG - chr5_2:10509898-10509917 None:intergenic 35.0%
! CTTTTCAGATGAATCGTAAG+CGG - chr5_2:10509935-10509954 None:intergenic 35.0%
! TAAGAATTCCACCGTTTTCA+TGG + chr5_2:10510013-10510032 Msa0756310:CDS 35.0%
! CGTTTTCATGGAAGAAACTA+TGG + chr5_2:10510025-10510044 Msa0756310:CDS 35.0%
!! AGTATAGCATTTTTGGATCC+TGG + chr5_2:10510075-10510094 Msa0756310:CDS 35.0%
!! ATTTTTGGATCCTGGAAACT+TGG + chr5_2:10510083-10510102 Msa0756310:CDS 35.0%
TAGAGATGAGTATCCTACTT+GGG + chr5_2:10510245-10510264 Msa0756310:CDS 35.0%
! ATGACTGAAGTTGCTTTGAT+TGG + chr5_2:10510288-10510307 Msa0756310:CDS 35.0%
!! GATTGGTTCTGATATTCAAG+AGG + chr5_2:10510305-10510324 Msa0756310:CDS 35.0%
!!! CCCCTGAGTTTCTTTTTTTT+TGG + chr5_2:10510538-10510557 Msa0756310:intron 35.0%
!!! TAACCGTTTTTGAGTTTGCA+GGG - chr5_2:10510576-10510595 None:intergenic 35.0%
!! TTTTAGTTGTACTATGGACG+AGG + chr5_2:10510744-10510763 Msa0756310:intron 35.0%
! GTGTAGAGACACTAAGTTTT+AGG + chr5_2:10510824-10510843 Msa0756310:intron 35.0%
!!! ACTAAGTTTTAGGTTCCACA+TGG + chr5_2:10510834-10510853 Msa0756310:intron 35.0%
! GTTTAGAACCTAAACTGGTA+GGG - chr5_2:10510860-10510879 None:intergenic 35.0%
! AGTTTAGAACCTAAACTGGT+AGG - chr5_2:10510861-10510880 None:intergenic 35.0%
!! GGTTCTAAACTTGATGTAAG+AGG + chr5_2:10510870-10510889 Msa0756310:intron 35.0%
TCTAAACTTGATGTAAGAGG+AGG + chr5_2:10510873-10510892 Msa0756310:intron 35.0%
CTAAACTTGATGTAAGAGGA+GGG + chr5_2:10510874-10510893 Msa0756310:intron 35.0%
ACATCCCCTATCAAAACATA+TGG + chr5_2:10510941-10510960 Msa0756310:intron 35.0%
TGAGAAGAGAAGACAACAAA+TGG + chr5_2:10511020-10511039 Msa0756310:intron 35.0%
! CTAAAAGGTGTGTTTCTTCA+TGG - chr5_2:10511284-10511303 None:intergenic 35.0%
AGGAAAATGAAACTGGAACA+AGG - chr5_2:10511546-10511565 None:intergenic 35.0%
CACCATAATTCTCAAGAAAG+AGG - chr5_2:10511566-10511585 None:intergenic 35.0%
TTCTTGAGAATTATGGTGTG+AGG + chr5_2:10511568-10511587 Msa0756310:CDS 35.0%
GAATTATGGTGTGAGGAAAT+TGG + chr5_2:10511575-10511594 Msa0756310:CDS 35.0%
TGCCGTTCTTATTGCTATAA+TGG + chr5_2:10511608-10511627 Msa0756310:CDS 35.0%
! TGCTTTCATTTTGCCTTTGT+AGG + chr5_2:10511799-10511818 Msa0756310:intron 35.0%
AGGAACCAAAATACCTACAA+AGG - chr5_2:10511815-10511834 None:intergenic 35.0%
!! ATAGTTCTGGAGCTAAGTTT+AGG - chr5_2:10511835-10511854 None:intergenic 35.0%
!! AACAGCTTGTTGTATAGTTC+TGG - chr5_2:10511848-10511867 None:intergenic 35.0%
AGAACTATACAACAAGCTGT+TGG + chr5_2:10511847-10511866 Msa0756310:CDS 35.0%
GAATGCAAGAATACATTGTG+AGG - chr5_2:10511895-10511914 None:intergenic 35.0%
TTCCCAATCCTGTATATATG+GGG + chr5_2:10512141-10512160 Msa0756310:CDS 35.0%
TACCCCATATATACAGGATT+GGG - chr5_2:10512146-10512165 None:intergenic 35.0%
ATACCCCATATATACAGGAT+TGG - chr5_2:10512147-10512166 None:intergenic 35.0%
ATCCTGTATATATGGGGTAT+TGG + chr5_2:10512147-10512166 Msa0756310:CDS 35.0%
! TCCTGTATATATGGGGTATT+GGG + chr5_2:10512148-10512167 Msa0756310:CDS 35.0%
ACTATTACTGGTACATATGC+TGG + chr5_2:10512195-10512214 Msa0756310:CDS 35.0%
ATATGCTGGACAATTCATCA+TGG + chr5_2:10512209-10512228 Msa0756310:CDS 35.0%
TATGCTGGACAATTCATCAT+GGG + chr5_2:10512210-10512229 Msa0756310:CDS 35.0%
TAAGTGCAACTATCATAGTC+GGG - chr5_2:10512302-10512321 None:intergenic 35.0%
! ATTGATTCCCTTGCTTTGTT+TGG + chr5_2:10512401-10512420 Msa0756310:CDS 35.0%
!! CTTTGAAACCAAACAAAGCA+AGG - chr5_2:10512412-10512431 None:intergenic 35.0%
!! CTTGCTTTGTTTGGTTTCAA+AGG + chr5_2:10512410-10512429 Msa0756310:CDS 35.0%
GGTTTCAAAGGAGCAAATAA+TGG + chr5_2:10512422-10512441 Msa0756310:CDS 35.0%
!! ATAATGGGCACTTTCAAGAT+TGG + chr5_2:10512438-10512457 Msa0756310:CDS 35.0%
CAAAGGAATCATATACCTTG+AGG - chr5_2:10512470-10512489 None:intergenic 35.0%
CATGTCCAATAAACTGACAA+TGG - chr5_2:10512523-10512542 None:intergenic 35.0%
!!! CTTACAAGCCACTTTTGTAA+GGG - chr5_2:10512626-10512645 None:intergenic 35.0%
!! CCCAAATTTTAACATGGTAG+TGG - chr5_2:10512807-10512826 None:intergenic 35.0%
!! GCCAAACCCAAATTTTAACA+TGG - chr5_2:10512813-10512832 None:intergenic 35.0%
!! TACCAAAGAGACTAGTTTCA+AGG + chr5_2:10513088-10513107 Msa0756310:intron 35.0%
AAAATATTAACGAGGGGGTA+GGG - chr5_2:10513128-10513147 None:intergenic 35.0%
AAAAATATTAACGAGGGGGT+AGG - chr5_2:10513129-10513148 None:intergenic 35.0%
TTTCAATACAGACCATTTCC+TGG + chr5_2:10513278-10513297 Msa0756310:intron 35.0%
! GATAAATGGCTATCTTTTGC+TGG + chr5_2:10513324-10513343 Msa0756310:CDS 35.0%
! TGTCCTACTTCATGATTTTG+AGG - chr5_2:10513565-10513584 None:intergenic 35.0%
! CTAATAACTTGCAACGATTC+TGG + chr5_2:10513664-10513683 Msa0756310:three_prime_UTR 35.0%
! AATAACTTGCAACGATTCTG+GGG + chr5_2:10513666-10513685 Msa0756310:three_prime_UTR 35.0%
! AGTGGTGGTACCTTATTTAT+TGG + chr5_2:10513690-10513709 Msa0756310:three_prime_UTR 35.0%
TATTGGACGTGAAAAGAAAC+AGG - chr5_2:10513929-10513948 None:intergenic 35.0%
GTTGTTCTAACAGAGGTTGT+TGG - chr5_2:10509891-10509910 None:intergenic 40.0%
CGCTTACGATTCATCTGAAA+AGG + chr5_2:10509933-10509952 Msa0756310:CDS 40.0%
TCTGAAAAGGTTGTCGTTGT+TGG + chr5_2:10509946-10509965 Msa0756310:CDS 40.0%
AGTTTCTTCCATGAAAACGG+TGG - chr5_2:10510024-10510043 None:intergenic 40.0%
GCTATACTCATCAGAAAACC+TGG - chr5_2:10510063-10510082 None:intergenic 40.0%
TTGGAAGGAGATCTTCAATC+TGG + chr5_2:10510102-10510121 Msa0756310:CDS 40.0%
TTCAATCTGGTGCAATTGCT+GGG + chr5_2:10510115-10510134 Msa0756310:CDS 40.0%
GCTGTTATGGCTTCTTATGT+GGG + chr5_2:10510143-10510162 Msa0756310:CDS 40.0%
! TGATTCAGCTTTTGTCAGCA+AGG + chr5_2:10510184-10510203 Msa0756310:CDS 40.0%
GTAGAGATGAGTATCCTACT+TGG + chr5_2:10510244-10510263 Msa0756310:CDS 40.0%
!! TAGGGAGTGCTATTGCTATT+AGG + chr5_2:10510331-10510350 Msa0756310:CDS 40.0%
!! TAATGGCCTTGTTCCTCTTT+GGG + chr5_2:10510362-10510381 Msa0756310:CDS 40.0%
TGACCCTGCAAACTCAAAAA+CGG + chr5_2:10510570-10510589 Msa0756310:intron 40.0%
!!! GTAACCGTTTTTGAGTTTGC+AGG - chr5_2:10510577-10510596 None:intergenic 40.0%
CTTCGAAATAACGCCATAAG+TGG - chr5_2:10510628-10510647 None:intergenic 40.0%
TAGATGTCACGTAAACCTGT+TGG + chr5_2:10511343-10511362 Msa0756310:intron 40.0%
AGATGTCACGTAAACCTGTT+GGG + chr5_2:10511344-10511363 Msa0756310:intron 40.0%
TAATGGCTCTCTCATTTGCA+TGG + chr5_2:10511625-10511644 Msa0756310:CDS 40.0%
CTCTCATTTGCATGGATGTT+TGG + chr5_2:10511633-10511652 Msa0756310:CDS 40.0%
ACAAGAACATCAACACCATC+TGG - chr5_2:10511669-10511688 None:intergenic 40.0%
!! GATGGTGTTGATGTTCTTGT+TGG + chr5_2:10511669-10511688 Msa0756310:CDS 40.0%
ATTCTGCTCTTGTTCAATCC+AGG + chr5_2:10511911-10511930 Msa0756310:CDS 40.0%
AATTGAGAGCTTCTTGAACG+CGG - chr5_2:10511960-10511979 None:intergenic 40.0%
! TGTCACAACTGTGTTTGCTA+AGG + chr5_2:10512035-10512054 Msa0756310:CDS 40.0%
! GTCACAACTGTGTTTGCTAA+GGG + chr5_2:10512036-10512055 Msa0756310:CDS 40.0%
!! GTGTTTGCTAAGGGCTTTTA+TGG + chr5_2:10512045-10512064 Msa0756310:CDS 40.0%
ACCCAATACCCCATATATAC+AGG - chr5_2:10512152-10512171 None:intergenic 40.0%
GCAAGGGAATCAATGCAAAA+GGG - chr5_2:10512395-10512414 None:intergenic 40.0%
AGCAAGGGAATCAATGCAAA+AGG - chr5_2:10512396-10512415 None:intergenic 40.0%
GCAGTTCAACCAAAATGCAA+AGG - chr5_2:10512487-10512506 None:intergenic 40.0%
! ACTTTTGTAAGGGTTGAGCT+AGG - chr5_2:10512616-10512635 None:intergenic 40.0%
TAGCTCAACCCTTACAAAAG+TGG + chr5_2:10512615-10512634 Msa0756310:intron 40.0%
!!! CCTTACAAGCCACTTTTGTA+AGG - chr5_2:10512627-10512646 None:intergenic 40.0%
! CCTTACAAAAGTGGCTTGTA+AGG + chr5_2:10512624-10512643 Msa0756310:intron 40.0%
TTACCCGAATAGCTTGATAG+CGG + chr5_2:10512748-10512767 Msa0756310:intron 40.0%
ATCCAAGATCCATTGGAGAT+TGG - chr5_2:10512779-10512798 None:intergenic 40.0%
GGAATCTATCCAAGATCCAT+TGG - chr5_2:10512786-10512805 None:intergenic 40.0%
AGTTTGGTAGGGGTTGAATT+GGG - chr5_2:10512835-10512854 None:intergenic 40.0%
AATGTCCACCACTCACATTT+CGG + chr5_2:10512871-10512890 Msa0756310:intron 40.0%
AATAAGTCCCGAAATGTGAG+TGG - chr5_2:10512882-10512901 None:intergenic 40.0%
CAAATGTGGGACTCTTAACT+AGG + chr5_2:10512906-10512925 Msa0756310:intron 40.0%
CTTGTTGAACTTAGCCACTT+AGG - chr5_2:10513055-10513074 None:intergenic 40.0%
CATAAGGATATCATGAGCTG+TGG - chr5_2:10513257-10513276 None:intergenic 40.0%
! GCTCTGGTGATAGTGATAAA+TGG + chr5_2:10513310-10513329 Msa0756310:CDS 40.0%
!!! TTCTTTTCCTCTGAAGTGAG+TGG + chr5_2:10513349-10513368 Msa0756310:CDS 40.0%
TGTTGTGTGCGTAATAACAG+CGG + chr5_2:10513387-10513406 Msa0756310:CDS 40.0%
! ACGTAACGGAGCTTGAAATA+AGG - chr5_2:10513435-10513454 None:intergenic 40.0%
TTGCCAAGGTGAAAACGTAA+CGG - chr5_2:10513449-10513468 None:intergenic 40.0%
GATCGAGTTAATCTTTGCCA+AGG - chr5_2:10513463-10513482 None:intergenic 40.0%
ATCAAAGACAGTTACCACCA+CGG + chr5_2:10513480-10513499 Msa0756310:CDS 40.0%
GCAGTAACATACCAAGTTAC+TGG - chr5_2:10513752-10513771 None:intergenic 40.0%
GTGGATAATGATTCGCGTTG+CGG - chr5_2:10509856-10509875 None:intergenic 45.0%
TTCGTAGGCTTCTTCTTCGT+CGG - chr5_2:10509974-10509993 None:intergenic 45.0%
CTATGGTTATTCAGTGGACC+AGG + chr5_2:10510042-10510061 Msa0756310:CDS 45.0%
TTGGATCCTGGAAACTTGGA+AGG + chr5_2:10510087-10510106 Msa0756310:CDS 45.0%
AGATCTCCTTCCAAGTTTCC+AGG - chr5_2:10510096-10510115 None:intergenic 45.0%
CTTCAATCTGGTGCAATTGC+TGG + chr5_2:10510114-10510133 Msa0756310:CDS 45.0%
TTGCTGGGTATTCGCTGTTA+TGG + chr5_2:10510130-10510149 Msa0756310:CDS 45.0%
CGCTGTTATGGCTTCTTATG+TGG + chr5_2:10510142-10510161 Msa0756310:CDS 45.0%
! TCTTATGTGGGCTACAGCTA+TGG + chr5_2:10510155-10510174 Msa0756310:CDS 45.0%
! CTTATGTGGGCTACAGCTAT+GGG + chr5_2:10510156-10510175 Msa0756310:CDS 45.0%
! TTATGTGGGCTACAGCTATG+GGG + chr5_2:10510157-10510176 Msa0756310:CDS 45.0%
! CAGCTTTTGTCAGCAAGGTT+AGG + chr5_2:10510189-10510208 Msa0756310:CDS 45.0%
!! AGCAAGGTTAGGTGTTGCTA+CGG + chr5_2:10510200-10510219 Msa0756310:CDS 45.0%
ATGAGTATCCTACTTGGGCA+AGG + chr5_2:10510250-10510269 Msa0756310:CDS 45.0%
AGAACAATCCTTGCCCAAGT+AGG - chr5_2:10510261-10510280 None:intergenic 45.0%
CTTGGGCAAGGATTGTTCTT+TGG + chr5_2:10510262-10510281 Msa0756310:CDS 45.0%
!! GTAATGGCCTTGTTCCTCTT+TGG + chr5_2:10510361-10510380 Msa0756310:CDS 45.0%
AGCCTCTGATGTCAGCTTAT+TGG + chr5_2:10510601-10510620 Msa0756310:intron 45.0%
GCCTCTGATGTCAGCTTATT+GGG + chr5_2:10510602-10510621 Msa0756310:intron 45.0%
TCAGCTTATTGGGCCACTTA+TGG + chr5_2:10510612-10510631 Msa0756310:intron 45.0%
TCACGTAAACCTGTTGGGAT+TGG + chr5_2:10511349-10511368 Msa0756310:intron 45.0%
CACGTAAACCTGTTGGGATT+GGG + chr5_2:10511350-10511369 Msa0756310:intron 45.0%
GTATTCTTCCCAATCCCAAC+AGG - chr5_2:10511361-10511380 None:intergenic 45.0%
TTTGGTGAAGCAAAGCCAGA+TGG + chr5_2:10511651-10511670 Msa0756310:CDS 45.0%
TATGAAGCATGAGCACACCT+AGG - chr5_2:10511762-10511781 None:intergenic 45.0%
CAACAAGCTGTTGGAGTTGT+TGG + chr5_2:10511856-10511875 Msa0756310:CDS 45.0%
! CAGGTTGACCCCAAAAAGAA+AGG + chr5_2:10511934-10511953 Msa0756310:CDS 45.0%
! TGAACGCGGCCTTTCTTTTT+GGG - chr5_2:10511946-10511965 None:intergenic 45.0%
! TTGAACGCGGCCTTTCTTTT+TGG - chr5_2:10511947-10511966 None:intergenic 45.0%
AAAGGAGACAACTAGCGCAA+TGG - chr5_2:10512001-10512020 None:intergenic 45.0%
! AGGATCGGTCTTGTAAATGC+AGG + chr5_2:10512084-10512103 Msa0756310:CDS 45.0%
! GGATCGGTCTTGTAAATGCA+GGG + chr5_2:10512085-10512104 Msa0756310:CDS 45.0%
CAGTACCTTCAGGAGAAGTA+TGG + chr5_2:10512108-10512127 Msa0756310:CDS 45.0%
! TACCTTCAGGAGAAGTATGG+AGG + chr5_2:10512111-10512130 Msa0756310:CDS 45.0%
GGTCAGAGTAGCACTATTAC+TGG + chr5_2:10512183-10512202 Msa0756310:CDS 45.0%
ACACCTCTCATGCTTAGTGT+TGG + chr5_2:10512713-10512732 Msa0756310:intron 45.0%
TGTCCAACACTAAGCATGAG+AGG - chr5_2:10512719-10512738 None:intergenic 45.0%
! CATGCTTAGTGTTGGACATC+TGG + chr5_2:10512721-10512740 Msa0756310:intron 45.0%
! TACCCGAATAGCTTGATAGC+GGG + chr5_2:10512749-10512768 Msa0756310:intron 45.0%
GTCCAATCTCCAATGGATCT+TGG + chr5_2:10512774-10512793 Msa0756310:intron 45.0%
CAGTTTGGTAGGGGTTGAAT+TGG - chr5_2:10512836-10512855 None:intergenic 45.0%
CAATTCAACCCCTACCAAAC+TGG + chr5_2:10512834-10512853 Msa0756310:intron 45.0%
CTTACAAGCCAGTTTGGTAG+GGG - chr5_2:10512845-10512864 None:intergenic 45.0%
CCTTACAAGCCAGTTTGGTA+GGG - chr5_2:10512846-10512865 None:intergenic 45.0%
ACCTTACAAGCCAGTTTGGT+AGG - chr5_2:10512847-10512866 None:intergenic 45.0%
ATGTCCACCACTCACATTTC+GGG + chr5_2:10512872-10512891 Msa0756310:intron 45.0%
CCTGAGAAGCAAGATGGAAT+AGG - chr5_2:10512960-10512979 None:intergenic 45.0%
CCTATTCCATCTTGCTTCTC+AGG + chr5_2:10512957-10512976 Msa0756310:intron 45.0%
ATCAAGCCTGAGAAGCAAGA+TGG - chr5_2:10512966-10512985 None:intergenic 45.0%
! GGCCTTGAAACTAGTCTCTT+TGG - chr5_2:10513093-10513112 None:intergenic 45.0%
GGGGTAGGGAACATAAAAAG+AGG - chr5_2:10513114-10513133 None:intergenic 45.0%
CAGTGTAGATGCCAGTAACT+TGG + chr5_2:10513738-10513757 Msa0756310:three_prime_UTR 45.0%
!! AAATTTAATCATTATTAATT+AGG + chr5_2:10513178-10513197 Msa0756310:intron 5.0%
GAACTAGTCACTGTCGAGTG+TGG - chr5_2:10509794-10509813 None:intergenic 50.0%
! TTGTTGGTGAGACATGGTGG+TGG - chr5_2:10509875-10509894 None:intergenic 50.0%
! AGGTTGTTGGTGAGACATGG+TGG - chr5_2:10509878-10509897 None:intergenic 50.0%
! CAGAGGTTGTTGGTGAGACA+TGG - chr5_2:10509881-10509900 None:intergenic 50.0%
!! GCAAGGTTAGGTGTTGCTAC+GGG + chr5_2:10510201-10510220 Msa0756310:CDS 50.0%
!! CAAGGTTAGGTGTTGCTACG+GGG + chr5_2:10510202-10510221 Msa0756310:CDS 50.0%
TGTTGCTACGGGGAGACATT+TGG + chr5_2:10510212-10510231 Msa0756310:CDS 50.0%
ATGACAACACCAGCCCAAAG+AGG - chr5_2:10510378-10510397 None:intergenic 50.0%
GCCCAATAAGCTGACATCAG+AGG - chr5_2:10510606-10510625 None:intergenic 50.0%
TGCTCTTGTTCAATCCAGGC+AGG + chr5_2:10511915-10511934 Msa0756310:CDS 50.0%
! GAACGCGGCCTTTCTTTTTG+GGG - chr5_2:10511945-10511964 None:intergenic 50.0%
!! TAGCGCAATGGTGGACTCTA+TGG - chr5_2:10511989-10512008 None:intergenic 50.0%
AAATGCAGGGCAGTACCTTC+AGG + chr5_2:10512098-10512117 Msa0756310:CDS 50.0%
! CTTCAGGAGAAGTATGGAGG+CGG + chr5_2:10512114-10512133 Msa0756310:CDS 50.0%
! GGTATTGGGTTACTAGCAGC+TGG + chr5_2:10512162-10512181 Msa0756310:CDS 50.0%
GCTGGACAATTCATCATGGG+TGG + chr5_2:10512213-10512232 Msa0756310:CDS 50.0%
!! GGATGAGGGCGTTGATTACT+CGG + chr5_2:10512262-10512281 Msa0756310:CDS 50.0%
!! CAAGATTGGCTCTGTCCTCA+AGG + chr5_2:10512452-10512471 Msa0756310:CDS 50.0%
CACCCGCTATCAAGCTATTC+GGG - chr5_2:10512754-10512773 None:intergenic 50.0%
CCACCCGCTATCAAGCTATT+CGG - chr5_2:10512755-10512774 None:intergenic 50.0%
!! CCCTACCAAACTGGCTTGTA+AGG + chr5_2:10512843-10512862 Msa0756310:intron 50.0%
CCTCACCTTACAAGCCAGTT+TGG - chr5_2:10512851-10512870 None:intergenic 50.0%
!! CCAAACTGGCTTGTAAGGTG+AGG + chr5_2:10512848-10512867 Msa0756310:intron 50.0%
AAGTCCCGAAATGTGAGTGG+TGG - chr5_2:10512879-10512898 None:intergenic 50.0%
! ACAGACCATTTCCTGGCTTG+TGG + chr5_2:10513285-10513304 Msa0756310:intron 50.0%
! GCTCCGTTACGTTTTCACCT+TGG + chr5_2:10513443-10513462 Msa0756310:CDS 50.0%
CGTGGTAGCTACTATCTCTG+TGG - chr5_2:10513518-10513537 None:intergenic 50.0%
GTTGACTGCTGAACTTTGCG+TGG - chr5_2:10513536-10513555 None:intergenic 50.0%
! TTGCAACGATTCTGGGGAAG+TGG + chr5_2:10513672-10513691 Msa0756310:three_prime_UTR 50.0%
AGAAGCCTACGAAGCTGACG+TGG + chr5_2:10509981-10510000 Msa0756310:CDS 55.0%
AGAGTCCACGTCAGCTTCGT+AGG - chr5_2:10509989-10510008 None:intergenic 55.0%
TACGAAGCTGACGTGGACTC+TGG + chr5_2:10509988-10510007 Msa0756310:CDS 55.0%
CACCAGCCCAAAGAGGAACA+AGG - chr5_2:10510371-10510390 None:intergenic 55.0%
CCTAAACTGGTAGGGCCATG+TGG - chr5_2:10510852-10510871 None:intergenic 55.0%
CCACATGGCCCTACCAGTTT+AGG + chr5_2:10510849-10510868 Msa0756310:intron 55.0%
!!! CTTTTTGGGGTCAACCTGCC+TGG - chr5_2:10511932-10511951 None:intergenic 55.0%
GGAGACAACTAGCGCAATGG+TGG - chr5_2:10511998-10512017 None:intergenic 55.0%
CGCCTCCATACTTCTCCTGA+AGG - chr5_2:10512116-10512135 None:intergenic 55.0%
!! CCGAATAGCTTGATAGCGGG+TGG + chr5_2:10512752-10512771 Msa0756310:intron 55.0%
AGCAGCCACAAGCCAGGAAA+TGG - chr5_2:10513293-10513312 None:intergenic 55.0%
CACTGCTCCACTCACTTCAG+AGG - chr5_2:10513359-10513378 None:intergenic 55.0%
! CAACGATTCTGGGGAAGTGG+TGG + chr5_2:10513675-10513694 Msa0756310:three_prime_UTR 55.0%
!! GGCCTTGTTCCTCTTTGGGC+TGG + chr5_2:10510366-10510385 Msa0756310:CDS 60.0%
GCGGGTGGTCCAATCTCCAA+TGG + chr5_2:10512767-10512786 Msa0756310:intron 60.0%
! TTCCTGGCTTGTGGCTGCTC+TGG + chr5_2:10513294-10513313 Msa0756310:CDS 60.0%
TGTGGCTGCTCAACTCTCCG+TGG - chr5_2:10513500-10513519 None:intergenic 60.0%
CACCAGAGCAGCCACAAGCC+AGG - chr5_2:10513299-10513318 None:intergenic 65.0%
GGCTGCTCAACTCTCCGTGG+TGG - chr5_2:10513497-10513516 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 10509673 10513952 10509673 ID=Msa0756310;Name=Msa0756310
chr5_2 mRNA 10509673 10513952 10509673 ID=Msa0756310-mRNA-1;Parent=Msa0756310;Name=Msa0756310-mRNA-1;_AED=0.06;_eAED=0.06;_QI=207|1|1|1|1|1|4|442|514
chr5_2 exon 10509673 10510412 10509673 ID=Msa0756310-mRNA-1:exon:4769;Parent=Msa0756310-mRNA-1
chr5_2 exon 10511554 10511690 10511554 ID=Msa0756310-mRNA-1:exon:4770;Parent=Msa0756310-mRNA-1
chr5_2 exon 10511821 10512473 10511821 ID=Msa0756310-mRNA-1:exon:4771;Parent=Msa0756310-mRNA-1
chr5_2 exon 10513289 10513952 10513289 ID=Msa0756310-mRNA-1:exon:4772;Parent=Msa0756310-mRNA-1
chr5_2 five_prime_UTR 10509673 10509879 10509673 ID=Msa0756310-mRNA-1:five_prime_utr;Parent=Msa0756310-mRNA-1
chr5_2 CDS 10509880 10510412 10509880 ID=Msa0756310-mRNA-1:cds;Parent=Msa0756310-mRNA-1
chr5_2 CDS 10511554 10511690 10511554 ID=Msa0756310-mRNA-1:cds;Parent=Msa0756310-mRNA-1
chr5_2 CDS 10511821 10512473 10511821 ID=Msa0756310-mRNA-1:cds;Parent=Msa0756310-mRNA-1
chr5_2 CDS 10513289 10513510 10513289 ID=Msa0756310-mRNA-1:cds;Parent=Msa0756310-mRNA-1
chr5_2 three_prime_UTR 10513511 10513952 10513511 ID=Msa0756310-mRNA-1:three_prime_utr;Parent=Msa0756310-mRNA-1
Gene Sequence

>Msa0756310

ATGTCTCACCAACAACCTCTGTTAGAACAACAACAAGAAGAAGGAGAAGAAACCGCTTACGATTCATCTGAAAAGGTTGTCGTTGTTGGAACCGACGAAGAAGAAGCCTACGAAGCTGACGTGGACTCTGGAGTAAGAATTCCACCGTTTTCATGGAAGAAACTATGGTTATTCAGTGGACCAGGTTTTCTGATGAGTATAGCATTTTTGGATCCTGGAAACTTGGAAGGAGATCTTCAATCTGGTGCAATTGCTGGGTATTCGCTGTTATGGCTTCTTATGTGGGCTACAGCTATGGGGCTTTTGATTCAGCTTTTGTCAGCAAGGTTAGGTGTTGCTACGGGGAGACATTTGGCTGAACTTTGTAGAGATGAGTATCCTACTTGGGCAAGGATTGTTCTTTGGTTGATGACTGAAGTTGCTTTGATTGGTTCTGATATTCAAGAGGTTATAGGGAGTGCTATTGCTATTAGGATTTTGAGTAATGGCCTTGTTCCTCTTTGGGCTGGTGTTGTCATTACTGCTTTAGATTGTTTCATTTTCCTCTTTCTTGAGAATTATGGTGTGAGGAAATTGGAAGCATTTTTTGCCGTTCTTATTGCTATAATGGCTCTCTCATTTGCATGGATGTTTGGTGAAGCAAAGCCAGATGGTGTTGATGTTCTTGTTGGTATTTTGGTTCCTAAACTTAGCTCCAGAACTATACAACAAGCTGTTGGAGTTGTTGGTTGCATTATTATGCCTCACAATGTATTCTTGCATTCTGCTCTTGTTCAATCCAGGCAGGTTGACCCCAAAAAGAAAGGCCGCGTTCAAGAAGCTCTCAATTACTACTCCATAGAGTCCACCATTGCGCTAGTTGTCTCCTTTATTATTAATATATTTGTCACAACTGTGTTTGCTAAGGGCTTTTATGGTACTGAAATAGCAAATAGGATCGGTCTTGTAAATGCAGGGCAGTACCTTCAGGAGAAGTATGGAGGCGGAGTATTCCCAATCCTGTATATATGGGGTATTGGGTTACTAGCAGCTGGTCAGAGTAGCACTATTACTGGTACATATGCTGGACAATTCATCATGGGTGGTTTTCTGAATTTGAAGTTGAAAAAATGGATGAGGGCGTTGATTACTCGGAGTTTCGCAATCGTCCCGACTATGATAGTTGCACTTATATTTGATTCTTCAGAGGAATCATTAGATGTTTTGAATGAATGGCTTAATGTTCTTCAGTCAGTGCAAATCCCTTTTGCATTGATTCCCTTGCTTTGTTTGGTTTCAAAGGAGCAAATAATGGGCACTTTCAAGATTGGCTCTGTCCTCAAGACCATTTCCTGGCTTGTGGCTGCTCTGGTGATAGTGATAAATGGCTATCTTTTGCTGGAATTCTTTTCCTCTGAAGTGAGTGGAGCAGTGTTCACAACTGTTGTGTGCGTAATAACAGCGGCATACGTTGCATTCATTATTTACCTTATTTCAAGCTCCGTTACGTTTTCACCTTGGCAAAGATTAACTCGATCAAAGACAGTTACCACCACGGAGAGTTGA

Protein sequence

>Msa0756310

MSHQQPLLEQQQEEGEETAYDSSEKVVVVGTDEEEAYEADVDSGVRIPPFSWKKLWLFSGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGRHLAELCRDEYPTWARIVLWLMTEVALIGSDIQEVIGSAIAIRILSNGLVPLWAGVVITALDCFIFLFLENYGVRKLEAFFAVLIAIMALSFAWMFGEAKPDGVDVLVGILVPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRQVDPKKKGRVQEALNYYSIESTIALVVSFIINIFVTTVFAKGFYGTEIANRIGLVNAGQYLQEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWMRALITRSFAIVPTMIVALIFDSSEESLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFKIGSVLKTISWLVAALVIVINGYLLLEFFSSEVSGAVFTTVVCVITAAYVAFIIYLISSSVTFSPWQRLTRSKTVTTTES*