AlfalfaGEDB | Msa0635380

M. sativa cultivar zhongmu-4 / Msa0635380

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944
PFAM: PF08240.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0635380	KAF9666711.1	70.533	638	171	5	1	622	1	637	0.0	909

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0635380	sp\|Q9SV68\|QORH_ARATH	73.041	319	84	2	304	622	13	329	4.59e-157	457
Msa0635380	sp\|Q9SV68\|QORH_ARATH	69.939	326	86	2	1	314	1	326	6.76e-154	449

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0635380	A0A835MMS5	70.533	638	171	5	1	622	1	637	0.0	909

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0013050	Msa0635380	-0.802896	4.512558e-49	-8.615850e-47
Msa0047980	Msa0635380	0.801122	1.045160e-48	-8.615850e-47
Msa0065950	Msa0635380	0.807352	5.270847e-50	-8.615850e-47
Msa0115390	Msa0635380	0.801201	1.006821e-48	-8.615850e-47
Msa0119850	Msa0635380	0.801078	1.066840e-48	-8.615850e-47
Msa0145010	Msa0635380	0.800590	1.342067e-48	-8.615850e-47
Msa0191440	Msa0635380	0.802976	4.345369e-49	-8.615850e-47
Msa0208350	Msa0635380	0.800699	1.274833e-48	-8.615850e-47
Msa0253200	Msa0635380	0.806258	8.977856e-50	-8.615850e-47
Msa0261550	Msa0635380	0.818531	1.867346e-52	-8.615850e-47

Showing 1 to 10 of 82 entries

Previous1 2 3 4 5…9Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0635380	MtrunA17_Chr4g0015091	94.479	326	6	2	1	314	1	326	0.0	617
Msa0635380	MtrunA17_Chr4g0015091	83.062	307	51	1	315	621	23	328	0.0	519
Msa0635380	MtrunA17_Chr4g0015051	92.378	328	25	0	295	622	3	330	0.0	608
Msa0635380	MtrunA17_Chr4g0015051	79.511	327	54	3	1	314	1	327	0.0	522
Msa0635380	MtrunA17_Chr4g0014971	87.147	319	40	1	304	622	13	330	0.0	557
Msa0635380	MtrunA17_Chr4g0014971	77.676	327	60	3	1	314	1	327	5.75e-178	507
Msa0635380	MtrunA17_Chr4g0014951	85.580	319	45	1	304	622	13	330	0.0	555
Msa0635380	MtrunA17_Chr4g0014951	76.758	327	63	3	1	314	1	327	1.00e-177	506
Msa0635380	MtrunA17_Chr4g0014931	86.520	319	42	1	304	622	13	330	0.0	550
Msa0635380	MtrunA17_Chr4g0014931	75.535	327	67	3	1	314	1	327	8.03e-171	489

Showing 1 to 10 of 43 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0635380	AT4G13010.1	73.041	319	84	2	304	622	13	329	4.66e-158	457
Msa0635380	AT4G13010.1	69.939	326	86	2	1	314	1	326	6.88e-155	449
Msa0635380	AT1G23740.1	33.526	346	186	10	289	622	71	384	3.21e-37	143
Msa0635380	AT1G23740.1	31.085	341	180	10	4	319	76	386	5.56e-28	116
Msa0635380	AT3G15090.1	30.650	323	196	6	318	621	52	365	5.39e-28	116
Msa0635380	AT3G15090.1	28.399	331	197	9	16	314	41	363	3.20e-23	102
Msa0635380	AT1G49670.1	31.915	329	182	16	316	620	306	616	1.63e-17	87.0
Msa0635380	AT1G49670.1	26.879	346	200	14	19	328	301	629	1.79e-11	67.8
Msa0635380	AT1G49670.2	30.548	347	186	17	316	620	306	639	8.74e-15	78.2
Msa0635380	AT4G21580.1	27.044	318	207	13	317	621	19	324	1.15e-14	75.9

Showing 1 to 10 of 16 entries

Previous1 2Next

Find 165 sgRNAs with CRISPR-Local

Find 781 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCCAACGCGCGAGGGCT+TGG	0.330209	4_3:-23856483	Msa0635380:CDS
AACCACGTGACAGCCACTTG+TGG	0.652023	4_3:-23846571	Msa0635380:CDS
AACCATGTGACAGCTACTTG+CGG	0.679301	4_3:-23856773	Msa0635380:CDS
AACTGTTAAGCGTGAGGGCT+TGG	0.380438	4_3:-23846281	Msa0635380:CDS
AAGTACTGGATTTGTGAGTT+TGG	0.417853	4_3:+23857480	None:intergenic
AATCACTCATCAAACAAGAG+AGG	0.654020	4_3:+23845946	None:intergenic
AATGTTACGAGCACCACAAG+TGG	0.621983	4_3:+23846558	None:intergenic
AATTCCTCCAATTTCTGTGA+GGG	0.528728	4_3:+23846690	None:intergenic
ACATCACTGAAGAGTCCATC+TGG	0.503456	4_3:-23846478	Msa0635380:CDS
ACATCATATTTCCTACCAGA+AGG	0.616649	4_3:+23856665	None:intergenic

Showing 1 to 10 of 165 entries

Previous1 2 3 4 5…17Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CTAATCATACAAGGAATGAA+GGG	+	chr4_3:23846208-23846227	None:intergenic	30.0%
CTGAAAATTTCTTCGAGATA+GGG	+	chr4_3:23846432-23846451	None:intergenic	30.0%
ACTGAAAATTTCTTCGAGAT+AGG	+	chr4_3:23846433-23846452	None:intergenic	30.0%
GGGTTTCAATATTGTATCAA+TGG	-	chr4_3:23846571-23846590	Msa0635380:CDS	30.0%
TGATAGAAAGAGATAAGTAC+TGG	+	chr4_3:23847079-23847098	None:intergenic	30.0%
TCTCTTTCTATCACTTCTTT+AGG	-	chr4_3:23847086-23847105	Msa0635380:intron	30.0%
TTGCAACACAATTTCATGAA+TGG	-	chr4_3:23847156-23847175	Msa0635380:intron	30.0%
AAATAACATGTACTCTTGCA+CGG	-	chr4_3:23847214-23847233	Msa0635380:intron	30.0%
ATGCACAGATGTAGAAAAAA+TGG	-	chr4_3:23847242-23847261	Msa0635380:intron	30.0%
TTTCAAATTCTGATGAGACT+TGG	+	chr4_3:23847292-23847311	None:intergenic	30.0%

Showing 1 to 10 of 781 entries

Previous1 2 3 4 5…79Next

Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	23845873	23858691	23845873	ID=Msa0635380;Name=Msa0635380
chr4_3	mRNA	23845873	23858691	23845873	ID=Msa0635380-mRNA-1;Parent=Msa0635380;Name=Msa0635380-mRNA-1;_AED=0.32;_eAED=0.32;_QI=38\|0.25\|0.33\|1\|0.62\|0.66\|9\|271\|622
chr4_3	exon	23845873	23846833	23845873	ID=Msa0635380-mRNA-1:exon:6140;Parent=Msa0635380-mRNA-1
chr4_3	exon	23849452	23849543	23849452	ID=Msa0635380-mRNA-1:exon:6139;Parent=Msa0635380-mRNA-1
chr4_3	exon	23850556	23850700	23850556	ID=Msa0635380-mRNA-1:exon:6138;Parent=Msa0635380-mRNA-1
chr4_3	exon	23856358	23856546	23856358	ID=Msa0635380-mRNA-1:exon:6137;Parent=Msa0635380-mRNA-1
chr4_3	exon	23856553	23856800	23856553	ID=Msa0635380-mRNA-1:exon:6136;Parent=Msa0635380-mRNA-1
chr4_3	exon	23856831	23857035	23856831	ID=Msa0635380-mRNA-1:exon:6135;Parent=Msa0635380-mRNA-1
chr4_3	exon	23857486	23857577	23857486	ID=Msa0635380-mRNA-1:exon:6134;Parent=Msa0635380-mRNA-1
chr4_3	exon	23858347	23858488	23858347	ID=Msa0635380-mRNA-1:exon:6133;Parent=Msa0635380-mRNA-1
chr4_3	exon	23858588	23858691	23858588	ID=Msa0635380-mRNA-1:exon:6132;Parent=Msa0635380-mRNA-1
chr4_3	five_prime_UTR	23858654	23858691	23858654	ID=Msa0635380-mRNA-1:five_prime_utr;Parent=Msa0635380-mRNA-1
chr4_3	CDS	23858588	23858653	23858588	ID=Msa0635380-mRNA-1:cds;Parent=Msa0635380-mRNA-1
chr4_3	CDS	23858347	23858488	23858347	ID=Msa0635380-mRNA-1:cds;Parent=Msa0635380-mRNA-1
chr4_3	CDS	23857486	23857577	23857486	ID=Msa0635380-mRNA-1:cds;Parent=Msa0635380-mRNA-1
chr4_3	CDS	23856831	23857035	23856831	ID=Msa0635380-mRNA-1:cds;Parent=Msa0635380-mRNA-1
chr4_3	CDS	23856553	23856800	23856553	ID=Msa0635380-mRNA-1:cds;Parent=Msa0635380-mRNA-1
chr4_3	CDS	23856358	23856546	23856358	ID=Msa0635380-mRNA-1:cds;Parent=Msa0635380-mRNA-1
chr4_3	CDS	23850556	23850700	23850556	ID=Msa0635380-mRNA-1:cds;Parent=Msa0635380-mRNA-1
chr4_3	CDS	23849452	23849543	23849452	ID=Msa0635380-mRNA-1:cds;Parent=Msa0635380-mRNA-1
chr4_3	CDS	23846144	23846833	23846144	ID=Msa0635380-mRNA-1:cds;Parent=Msa0635380-mRNA-1
chr4_3	three_prime_UTR	23845873	23846143	23845873	ID=Msa0635380-mRNA-1:three_prime_utr;Parent=Msa0635380-mRNA-1

Gene Sequence

>Msa0635380

ATGGCTTCCAAACTCATGCATGCAGTTCAATACGATTCCTATGGTGGAGGTCCCTCCGGATTGAAGCATGTAGAAGTTCCTGTTCCAATTCCAAAGACCAATGAAGTTTTAATCAAAGTGGAAGCAACAAGCATTAATCCAGTTGATTGGAAGATTCAAAGCGGTCTTCTTCGCCCTTTATTGCCACGGAAATTTCCCTTCATTCCTTGCACTGATGTATCAGGAGAGGTTGTAGAGGTTGGACCGCAAGTCAACGATTTTAAAGTTGGAGACAAAGTTATCACCAAACTCACAAATCCATATGCAGGTGGACTAGCTGAGTTTGCGGTGGCTGCTGAGAGCTCAACAGCTGCCAGACCATCTGAAGTCTCGGCTGCTGAAGCTGCGAGTTTACCTGTAGCCGGTCAAACAGCTCGTGATGTGCTCACCCAAGTTGGGGGAGTTAAGTTTGATGGGACTGGTGAGCCCAAGAACATTTTGGTAACTGCTGCTTCAGGTGGTGTAGGGAACAACCATGTGACAGCTACTTGCGGTGCTCGCAACATTGACCTTATCAAGAGCTTAGGTGCCGATGAGGTTCTCGACTACAAGACTCCAGAAGGAGCATCGCTAAAAAGTCCTTCTGGTAGGAAATATGATGTAGTGATACATTGTACTGCTGGAATACCATGGTCAGTTTTTGACCCTAATTTGTCTGAAAATGGGGTTGTGGCGGATATAACACCTGGCCCAAGATCAATGTGGACTTTTGCGAAACTTACCTTTTCGAAGAAGCAGTGGGTGCCGTTTCTTTTAAATCCAACGCGCGAGGGCTTGGAACATCTTGCTCGGTTAGTGAAGGATGGAAAACTCAAAACAATTATTGACTCCAAGTTTCCTTTGAGCAAAGCTGAAGATGCTTGGGCTAAGAGCATTGATGGCCATGCTACTGGAAAAATCATTCATGTTGAAGTTCCTGTACCAACTCCAAAGACCAATGAAGTTTTACTCAAATTGGAAGCAACTAGCATCAACCCAGTTGATTGGAAGATTCAGTCTGGTGCTCTAAGGGCTATCTTTTTGCCTCGAAAATTTCCTCACATACCTTGCACTGATGTAGCAGGAGAGGTAGTAGAGATTGGACCACAAGTTAAGGATTTTAAAGCTGGCGACAAAGTTATTGCTAAACTCACACATCAATATGGAGGTGGACTAGCTGAGTTTGCCGTGGCTAGCGAGAGCTTAACAGCTGCCAGACCACCTGAAGTCTCAGCTGCTGAAGGTGCGAGTTTACCTATTGCCGGTCTCACAGCTCGTGACGCCCTCACAGAAATTGGAGGAATTAAGCTTGATGGGACTGGCGAGCAGAAGAATGTTTTGGTGACTGCTGCTTCAGGTGGTGTAGGTTCATTTGCTGTTCAACTTGCCAAACTAGGGAACAACCACGTGACAGCCACTTGTGGTGCTCGTAACATTGACTTCGTTAAGAGCTTAGGTGCTGACGAGGTTCTTGACTACAAAACTCCAGAGGGAACATCACTGAAGAGTCCATCTGGTAAAAAATACGATGCAGTAATACATTGCACCACTGGAATACCGTGGTCAACTTTTGATCCTAATTTGAGTGAAAAAGGGGTTGTCGTGGATTTAACACCTGGCCCAAGTTCAATGTTGACTTTTGCACTGAAGAAACTTACTTTTTCGAAGAAGCGGTTGGTGCCATTCGTTGTAACTGTTAAGCGTGAGGGCTTGGAACATCTCGCTCAACTAGTGAAGGATGGAAAACTCAAGACAATTATCGACTCTAAGTTTCCTTTGAGCAAAGCTGAAGATGCTTGGGCTAAGAGTATTGATGGCCATGCTACTGGAAAAATCATTGTTGAGCCATAG

Protein sequence

>Msa0635380

MASKLMHAVQYDSYGGGPSGLKHVEVPVPIPKTNEVLIKVEATSINPVDWKIQSGLLRPLLPRKFPFIPCTDVSGEVVEVGPQVNDFKVGDKVITKLTNPYAGGLAEFAVAAESSTAARPSEVSAAEAASLPVAGQTARDVLTQVGGVKFDGTGEPKNILVTAASGGVGNNHVTATCGARNIDLIKSLGADEVLDYKTPEGASLKSPSGRKYDVVIHCTAGIPWSVFDPNLSENGVVADITPGPRSMWTFAKLTFSKKQWVPFLLNPTREGLEHLARLVKDGKLKTIIDSKFPLSKAEDAWAKSIDGHATGKIIHVEVPVPTPKTNEVLLKLEATSINPVDWKIQSGALRAIFLPRKFPHIPCTDVAGEVVEIGPQVKDFKAGDKVIAKLTHQYGGGLAEFAVASESLTAARPPEVSAAEGASLPIAGLTARDALTEIGGIKLDGTGEQKNVLVTAASGGVGSFAVQLAKLGNNHVTATCGARNIDFVKSLGADEVLDYKTPEGTSLKSPSGKKYDAVIHCTTGIPWSTFDPNLSEKGVVVDLTPGPSSMLTFALKKLTFSKKRLVPFVVTVKREGLEHLAQLVKDGKLKTIIDSKFPLSKAEDAWAKSIDGHATGKIIVEP*