Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866250 | XP_003614405.1 | 97.510 | 241 | 6 | 0 | 2 | 242 | 4 | 244 | 1.92e-167 | 472 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866250 | sp|Q9C540|ACFR4_ARATH | 63.968 | 247 | 73 | 3 | 1 | 242 | 1 | 236 | 8.67e-97 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866250 | G7JX23 | 97.510 | 241 | 6 | 0 | 2 | 242 | 4 | 244 | 9.16e-168 | 472 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027820 | Msa0866250 | 0.803354 | 3.629281e-49 | -8.615850e-47 |
| Msa0626450 | Msa0866250 | 0.818299 | 2.107695e-52 | -8.615850e-47 |
| Msa0626490 | Msa0866250 | 0.815297 | 9.934472e-52 | -8.615850e-47 |
| Msa0664600 | Msa0866250 | 0.813862 | 2.065080e-51 | -8.615850e-47 |
| Msa0729100 | Msa0866250 | 0.831529 | 1.585434e-55 | -8.615850e-47 |
| Msa0730430 | Msa0866250 | 0.803578 | 3.260133e-49 | -8.615850e-47 |
| Msa0766930 | Msa0866250 | 0.818737 | 1.677126e-52 | -8.615850e-47 |
| Msa0807280 | Msa0866250 | 0.827631 | 1.406443e-54 | -8.615850e-47 |
| Msa0807820 | Msa0866250 | 0.828187 | 1.033302e-54 | -8.615850e-47 |
| Msa0174450 | Msa0866250 | 0.801200 | 1.007397e-48 | -8.615850e-47 |
| Msa0378720 | Msa0866250 | 0.813740 | 2.196324e-51 | -8.615850e-47 |
| Msa0474730 | Msa0866250 | 0.805032 | 1.623606e-49 | -8.615850e-47 |
| Msa0866250 | Msa0866270 | 0.802375 | 5.781059e-49 | -8.615850e-47 |
| Msa0866250 | Msa0866290 | 0.853170 | 2.852020e-61 | -8.615850e-47 |
| Msa0866250 | Msa1011530 | 0.800644 | 1.308460e-48 | -8.615850e-47 |
| Msa0866250 | Msa1113340 | 0.801673 | 8.057071e-49 | -8.615850e-47 |
| Msa0866250 | Msa1271990 | 0.801975 | 6.984754e-49 | -8.615850e-47 |
| Msa0866250 | Msa1440960 | 0.810068 | 1.385156e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866250 | MtrunA17_Chr5g0422371 | 97.510 | 241 | 6 | 0 | 2 | 242 | 4 | 244 | 1.76e-171 | 472 |
| Msa0866250 | MtrunA17_Chr6g0456901 | 44.934 | 227 | 120 | 3 | 1 | 226 | 1 | 223 | 2.29e-60 | 190 |
| Msa0866250 | MtrunA17_Chr1g0203371 | 41.071 | 224 | 123 | 5 | 1 | 222 | 1 | 217 | 2.50e-47 | 156 |
| Msa0866250 | MtrunA17_Chr1g0161921 | 39.151 | 212 | 117 | 4 | 15 | 224 | 16 | 217 | 1.82e-42 | 143 |
| Msa0866250 | MtrunA17_Chr1g0161941 | 33.333 | 207 | 129 | 5 | 14 | 219 | 9 | 207 | 1.41e-31 | 115 |
| Msa0866250 | MtrunA17_Chr8g0375991 | 35.122 | 205 | 120 | 6 | 14 | 216 | 9 | 202 | 5.90e-28 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866250 | AT1G26100.1 | 63.968 | 247 | 73 | 3 | 1 | 242 | 1 | 236 | 8.82e-98 | 285 |
| Msa0866250 | AT5G38630.1 | 46.222 | 225 | 109 | 6 | 10 | 228 | 10 | 228 | 2.78e-62 | 195 |
| Msa0866250 | AT4G25570.1 | 39.437 | 213 | 123 | 4 | 9 | 220 | 8 | 215 | 2.71e-44 | 149 |
| Msa0866250 | AT4G25570.2 | 39.437 | 213 | 123 | 4 | 9 | 220 | 49 | 256 | 1.31e-43 | 149 |
| Msa0866250 | AT1G14730.1 | 30.698 | 215 | 137 | 4 | 14 | 226 | 20 | 224 | 2.04e-23 | 94.7 |
Find 73 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTAGCTTCTGGGATATT+TGG | 0.112597 | 5_4:+67710134 | Msa0866250:CDS |
| TAGCATTTCTTGTTCTCTTC+TGG | 0.118815 | 5_4:+67709694 | Msa0866250:CDS |
| CCTTAGTGGCTTTGTTATTC+TGG | 0.121532 | 5_4:+67712630 | Msa0866250:CDS |
| CAAGGGGTGGCTTTAGCTTC+TGG | 0.175443 | 5_4:+67710125 | Msa0866250:CDS |
| GAATGTTTGTGCAGCAATTT+TGG | 0.224729 | 5_4:+67710046 | Msa0866250:intron |
| TTGATTTGTGTATCACTCTT+TGG | 0.246496 | 5_4:+67710227 | Msa0866250:CDS |
| TAATAGGCTTCTTGAACTTT+TGG | 0.266466 | 5_4:+67712407 | Msa0866250:CDS |
| CTTTAGCTTCTGGGATATTT+GGG | 0.267158 | 5_4:+67710135 | Msa0866250:CDS |
| TTACCATGGCATGTATTTCT+TGG | 0.277630 | 5_4:+67712466 | Msa0866250:CDS |
| CTTCTGGGATATTTGGGATT+TGG | 0.279862 | 5_4:+67710141 | Msa0866250:CDS |
| TCCTGTTGAGGAAGAGAATT+AGG | 0.298620 | 5_4:-67709750 | None:intergenic |
| CTCTTTCTTGCGAGAGTTTG+TGG | 0.301862 | 5_4:+67709663 | Msa0866250:CDS |
| AAGGGGTGGCTTTAGCTTCT+GGG | 0.303519 | 5_4:+67710126 | Msa0866250:CDS |
| ATTTCTATAGCCTTCATTCA+TGG | 0.316756 | 5_4:+67710198 | Msa0866250:CDS |
| AGCATTTCTTGTTCTCTTCT+GGG | 0.319777 | 5_4:+67709695 | Msa0866250:CDS |
| TACTACCTTCTCCACTTAAA+AGG | 0.321243 | 5_4:-67709913 | None:intergenic |
| CCACAATCCCATCATTTACT+TGG | 0.326307 | 5_4:-67710172 | None:intergenic |
| TCCATGGTTGTAAATTCTTT+AGG | 0.339651 | 5_4:+67712592 | Msa0866250:CDS |
| CATCCTGTGCTCATGGTCAT+TGG | 0.339718 | 5_4:+67709884 | Msa0866250:CDS |
| ACATTTAGTTACAGTTGTTA+TGG | 0.357021 | 5_4:+67709611 | Msa0866250:exon |
| TCTTGTTCTCTTCTGGGCTC+TGG | 0.357755 | 5_4:+67709701 | Msa0866250:CDS |
| GCAGTAGCAACGGCTGAAAC+TGG | 0.360280 | 5_4:+67712508 | Msa0866250:CDS |
| TTAGGTCTTGCTCTCCTTAG+TGG | 0.363802 | 5_4:+67712616 | Msa0866250:CDS |
| TTGTTAGAATTTAGATATCT+TGG | 0.364277 | 5_4:+67712774 | Msa0866250:three_prime_UTR |
| GTTGTAAATTCTTTAGGCTT+AGG | 0.366014 | 5_4:+67712598 | Msa0866250:CDS |
| ATTGTATTGCAGTGGCTAAT+AGG | 0.375849 | 5_4:+67712391 | Msa0866250:intron |
| CCCAAGTATCAAATTCTTCA+AGG | 0.392124 | 5_4:+67712664 | Msa0866250:CDS |
| TCCTAATTCTCTTCCTCAAC+AGG | 0.404001 | 5_4:+67709749 | Msa0866250:CDS |
| TGTATCACTCTTTGGAGCTC+AGG | 0.406685 | 5_4:+67710235 | Msa0866250:CDS |
| GCCTTGAAGAATTTGATACT+TGG | 0.414629 | 5_4:-67712665 | None:intergenic |
| TAGATGGTTGCCTGGGTCAA+GGG | 0.416984 | 5_4:+67710073 | Msa0866250:CDS |
| CTGCCAATGCATAAGTGTAT+AGG | 0.426996 | 5_4:-67712489 | None:intergenic |
| AAATGCGAACAGTGAGGATA+AGG | 0.435065 | 5_4:+67712440 | Msa0866250:CDS |
| ACAAAATTCCAAGTAAATGA+TGG | 0.437217 | 5_4:+67710164 | Msa0866250:CDS |
| CATGGACTCAGTGCTGTGTT+TGG | 0.448440 | 5_4:-67712575 | None:intergenic |
| ATAGATGGTTGCCTGGGTCA+AGG | 0.449560 | 5_4:+67710072 | Msa0866250:CDS |
| TATAGCCTTCATTCATGGAT+GGG | 0.458166 | 5_4:+67710203 | Msa0866250:CDS |
| GAAGAGAATTAGGAGTATTG+AGG | 0.459271 | 5_4:-67709740 | None:intergenic |
| TCGGTGCATTTATGTCTTCA+AGG | 0.466772 | 5_4:+67710107 | Msa0866250:CDS |
| TTGGTGCATAGATGGTTGCC+TGG | 0.471390 | 5_4:+67710065 | Msa0866250:CDS |
| GGTTCTCCATCCTGTGCTCA+TGG | 0.477323 | 5_4:+67709877 | Msa0866250:intron |
| CTATAGCCTTCATTCATGGA+TGG | 0.480089 | 5_4:+67710202 | Msa0866250:CDS |
| AGATGGTTGCCTGGGTCAAG+GGG | 0.483244 | 5_4:+67710074 | Msa0866250:CDS |
| ACTACTAACTAGTACACTCT+TGG | 0.484995 | 5_4:-67709546 | None:intergenic |
| AAGAGCAAAGGGAGTAGTGA+GGG | 0.491250 | 5_4:-67709645 | None:intergenic |
| CCAGAATAACAAAGCCACTA+AGG | 0.497367 | 5_4:-67712630 | None:intergenic |
| CTCTCGCAAGAAAGAGCAAA+GGG | 0.500913 | 5_4:-67709656 | None:intergenic |
| CGGTGCATTTATGTCTTCAA+GGG | 0.507370 | 5_4:+67710108 | Msa0866250:CDS |
| TCACTGTTCGCATTTCTCCT+CGG | 0.512543 | 5_4:-67712432 | None:intergenic |
| CCTTGAAGAATTTGATACTT+GGG | 0.520050 | 5_4:-67712664 | None:intergenic |
| TCAAACCCATCCATGAATGA+AGG | 0.528875 | 5_4:-67710208 | None:intergenic |
| CAAACACAGCACTGAGTCCA+TGG | 0.530906 | 5_4:+67712576 | Msa0866250:CDS |
| CAAAATTCCAAGTAAATGAT+GGG | 0.535853 | 5_4:+67710165 | Msa0866250:CDS |
| CCAAGTAAATGATGGGATTG+TGG | 0.538655 | 5_4:+67710172 | Msa0866250:CDS |
| GCATTTATGTCTTCAAGGGG+TGG | 0.549961 | 5_4:+67710112 | Msa0866250:CDS |
| TGGTCACAAGCGAATTAAGA+TGG | 0.551793 | 5_4:+67712794 | Msa0866250:three_prime_UTR |
| TGGCCTATACACTTATGCAT+TGG | 0.552843 | 5_4:+67712486 | Msa0866250:CDS |
| AGGCCAAGAAATACATGCCA+TGG | 0.575316 | 5_4:-67712469 | None:intergenic |
| TTATGCATTGGCAGTAGCAA+CGG | 0.579204 | 5_4:+67712498 | Msa0866250:CDS |
| TGGTGCATAGATGGTTGCCT+GGG | 0.586545 | 5_4:+67710066 | Msa0866250:CDS |
| GCCTAAAGAATTTACAACCA+TGG | 0.590393 | 5_4:-67712593 | None:intergenic |
| AATCCAATGACCATGAGCAC+AGG | 0.602677 | 5_4:-67709887 | None:intergenic |
| CTAACTAGTACACTCTTGGA+TGG | 0.613806 | 5_4:-67709542 | None:intergenic |
| CAATGACCATGAGCACAGGA+TGG | 0.614301 | 5_4:-67709883 | None:intergenic |
| GATGGTTGCCTGGGTCAAGG+GGG | 0.624454 | 5_4:+67710075 | Msa0866250:CDS |
| ACTCTCGCAAGAAAGAGCAA+AGG | 0.634673 | 5_4:-67709657 | None:intergenic |
| GGTGCATTTATGTCTTCAAG+GGG | 0.646132 | 5_4:+67710109 | Msa0866250:CDS |
| AAAGAGCAAAGGGAGTAGTG+AGG | 0.647530 | 5_4:-67709646 | None:intergenic |
| GTGAGTCACTGACTAGTGAG+AGG | 0.650333 | 5_4:+67709567 | Msa0866250:five_prime_UTR |
| GCATAGATGAGATCCTGTTG+AGG | 0.669004 | 5_4:-67709762 | None:intergenic |
| GAGTAGTGAGGGAAAGACAG+TGG | 0.669481 | 5_4:-67709634 | None:intergenic |
| TGAGGATAAGGATCTTACCA+TGG | 0.703662 | 5_4:+67712452 | Msa0866250:CDS |
| GAGGAGAAATGCGAACAGTG+AGG | 0.732322 | 5_4:+67712434 | Msa0866250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTTAAATAAATATTA+AGG | + | chr5_4:67710447-67710466 | Msa0866250:intron | 0.0% |
| !! | TTGATGTAATTAAATAAAAA+GGG | - | chr5_4:67709818-67709837 | None:intergenic | 10.0% |
| !! | TTTGATGTAATTAAATAAAA+AGG | - | chr5_4:67709819-67709838 | None:intergenic | 10.0% |
| !!! | TTTAATTTTAATTTAATTGC+AGG | + | chr5_4:67709856-67709875 | Msa0866250:intron | 10.0% |
| !!! | AAAAAATTCTGAAATTTTTT+TGG | + | chr5_4:67711017-67711036 | Msa0866250:intron | 10.0% |
| !!! | AAATTTTAAATGAAATTGAA+AGG | - | chr5_4:67711519-67711538 | None:intergenic | 10.0% |
| !! | TTAACTATTAATTTAAGAAT+TGG | + | chr5_4:67712133-67712152 | Msa0866250:intron | 10.0% |
| !!! | TTCTAAGATTAATTTTTACT+TGG | + | chr5_4:67710303-67710322 | Msa0866250:intron | 15.0% |
| !!! | TCTAAGATTAATTTTTACTT+GGG | + | chr5_4:67710304-67710323 | Msa0866250:intron | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | - | chr5_4:67710832-67710851 | None:intergenic | 15.0% |
| !!! | TGAAGATTGAAAATTTTATA+AGG | + | chr5_4:67711133-67711152 | Msa0866250:intron | 15.0% |
| !! | AAAAAGTTGACATATTTATA+GGG | + | chr5_4:67711193-67711212 | Msa0866250:intron | 15.0% |
| !!! | TTGTCAAAAGTTTTTTAATT+AGG | + | chr5_4:67711398-67711417 | Msa0866250:intron | 15.0% |
| !! | AACCCAAAAATATTATGTAT+TGG | + | chr5_4:67709949-67709968 | Msa0866250:intron | 20.0% |
| !! | ACCCAAAAATATTATGTATT+GGG | + | chr5_4:67709950-67709969 | Msa0866250:intron | 20.0% |
| !!! | TCCCAATACATAATATTTTT+GGG | - | chr5_4:67709954-67709973 | None:intergenic | 20.0% |
| !!! | ATCCCAATACATAATATTTT+TGG | - | chr5_4:67709955-67709974 | None:intergenic | 20.0% |
| !! | AAATATTATGTATTGGGATT+AGG | + | chr5_4:67709956-67709975 | Msa0866250:intron | 20.0% |
| !! | TAATGAAATCAAGTCATTAT+TGG | + | chr5_4:67709989-67710008 | Msa0866250:intron | 20.0% |
| !!! | AATTTTATTTCCTGATGAAT+AGG | - | chr5_4:67710434-67710453 | None:intergenic | 20.0% |
| !!! | TTAGCTTATGAAATGATTTT+TGG | + | chr5_4:67710506-67710525 | Msa0866250:intron | 20.0% |
| !!! | ATTTTGTATTTTCCTTCTTT+GGG | - | chr5_4:67710667-67710686 | None:intergenic | 20.0% |
| !!! | TAAAAAGAACATGAAAGTAT+AGG | - | chr5_4:67710729-67710748 | None:intergenic | 20.0% |
| !!! | TATACTTTCATGTTCTTTTT+AGG | + | chr5_4:67710728-67710747 | Msa0866250:intron | 20.0% |
| !!! | ATACTTTCATGTTCTTTTTA+GGG | + | chr5_4:67710729-67710748 | Msa0866250:intron | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | - | chr5_4:67710833-67710852 | None:intergenic | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | + | chr5_4:67711101-67711120 | Msa0866250:intron | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | + | chr5_4:67711102-67711121 | Msa0866250:intron | 20.0% |
| !!! | AAATTTTCAATCTTCACTTT+TGG | - | chr5_4:67711129-67711148 | None:intergenic | 20.0% |
| !! | CAAAAAGTTGACATATTTAT+AGG | + | chr5_4:67711192-67711211 | Msa0866250:intron | 20.0% |
| !!! | AGAATGGTTAAATATGTTTT+TGG | - | chr5_4:67711220-67711239 | None:intergenic | 20.0% |
| !! | AATCGTGAAATTAAAAAGAA+TGG | - | chr5_4:67711236-67711255 | None:intergenic | 20.0% |
| !! | AATTCTATTATTATCCCATA+TGG | + | chr5_4:67711343-67711362 | Msa0866250:intron | 20.0% |
| !! | AATATTTATTCGATCCATAT+GGG | - | chr5_4:67711360-67711379 | None:intergenic | 20.0% |
| !! | CAAAAAATTTGAACAAAAGA+GGG | + | chr5_4:67711627-67711646 | Msa0866250:intron | 20.0% |
| !! | AAAAAATTTGAACAAAAGAG+GGG | + | chr5_4:67711628-67711647 | Msa0866250:intron | 20.0% |
| !!! | TCAAAAAATATTTTCCATGT+AGG | + | chr5_4:67711665-67711684 | Msa0866250:intron | 20.0% |
| !! | CTTATGCAAATTTATTAGTT+AGG | - | chr5_4:67711730-67711749 | None:intergenic | 20.0% |
| !! | CTCAAATAATGATAACTAAT+TGG | - | chr5_4:67711756-67711775 | None:intergenic | 20.0% |
| !!! | ATTCACAAATTAAGCTATTT+TGG | + | chr5_4:67711796-67711815 | Msa0866250:intron | 20.0% |
| !!! | TTAGTGTATACATAATCTTT+TGG | + | chr5_4:67712289-67712308 | Msa0866250:intron | 20.0% |
| !!! | TAGTGTATACATAATCTTTT+GGG | + | chr5_4:67712290-67712309 | Msa0866250:intron | 20.0% |
| !!! | GTGTATAGATATTTTATGTA+TGG | + | chr5_4:67712323-67712342 | Msa0866250:intron | 20.0% |
| !! | TTGTTAGAATTTAGATATCT+TGG | + | chr5_4:67712774-67712793 | Msa0866250:three_prime_UTR | 20.0% |
| ! | ACATTTAGTTACAGTTGTTA+TGG | + | chr5_4:67709611-67709630 | Msa0866250:exon | 25.0% |
| !! | ATTGGATTTATCCTTTTAAG+TGG | + | chr5_4:67709902-67709921 | Msa0866250:CDS | 25.0% |
| ! | ACAAAATTCCAAGTAAATGA+TGG | + | chr5_4:67710164-67710183 | Msa0866250:CDS | 25.0% |
| ! | CAAAATTCCAAGTAAATGAT+GGG | + | chr5_4:67710165-67710184 | Msa0866250:CDS | 25.0% |
| ! | AATATGCACTAAATATGTGA+TGG | + | chr5_4:67710560-67710579 | Msa0866250:intron | 25.0% |
| ! | ATTGTACTAACTAGCTAAAT+TGG | - | chr5_4:67710622-67710641 | None:intergenic | 25.0% |
| !! | CATTTTGTATTTTCCTTCTT+TGG | - | chr5_4:67710668-67710687 | None:intergenic | 25.0% |
| !! | TCGTCTTGTTGTAAAAATTT+AGG | + | chr5_4:67710702-67710721 | Msa0866250:intron | 25.0% |
| ! | GAAAAGTTGACATGTTTATA+GGG | - | chr5_4:67710772-67710791 | None:intergenic | 25.0% |
| ! | TTATAAGGACTAAAAGTTGA+AGG | + | chr5_4:67711148-67711167 | Msa0866250:intron | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr5_4:67711161-67711180 | Msa0866250:intron | 25.0% |
| !!! | TTGATAATGTCTTAGAAAGA+CGG | - | chr5_4:67711313-67711332 | None:intergenic | 25.0% |
| ! | CAATATTTATTCGATCCATA+TGG | - | chr5_4:67711361-67711380 | None:intergenic | 25.0% |
| ! | ATCATAAGAGAAAATATACG+AGG | - | chr5_4:67711487-67711506 | None:intergenic | 25.0% |
| !! | CCTCTTTTGTTCAAATTTTT+TGG | - | chr5_4:67711629-67711648 | None:intergenic | 25.0% |
| ! | CCAAAAAATTTGAACAAAAG+AGG | + | chr5_4:67711626-67711645 | Msa0866250:intron | 25.0% |
| !!! | ATTACATTTTTTCTCCTACA+TGG | - | chr5_4:67711682-67711701 | None:intergenic | 25.0% |
| ! | ATGCAAATTTATTAGTTAGG+AGG | - | chr5_4:67711727-67711746 | None:intergenic | 25.0% |
| !!! | CAAATTAAGCTATTTTGGTA+CGG | + | chr5_4:67711801-67711820 | Msa0866250:intron | 25.0% |
| ! | AACTCTCTATTTCATACAAA+TGG | - | chr5_4:67711853-67711872 | None:intergenic | 25.0% |
| ! | GATAATGCATAATATATGCA+AGG | + | chr5_4:67712180-67712199 | Msa0866250:intron | 25.0% |
| !! | AGTGTATACATAATCTTTTG+GGG | + | chr5_4:67712291-67712310 | Msa0866250:intron | 25.0% |
| AAAGGGAATGAAGAAAATAG+AGG | - | chr5_4:67709801-67709820 | None:intergenic | 30.0% | |
| !! | TTTATCCTTTTAAGTGGAGA+AGG | + | chr5_4:67709908-67709927 | Msa0866250:CDS | 30.0% |
| ATTTCTATAGCCTTCATTCA+TGG | + | chr5_4:67710198-67710217 | Msa0866250:CDS | 30.0% | |
| !! | TTGATTTGTGTATCACTCTT+TGG | + | chr5_4:67710227-67710246 | Msa0866250:CDS | 30.0% |
| ! | AGACTCTTTTGTATCAGTTT+TGG | + | chr5_4:67710479-67710498 | Msa0866250:intron | 30.0% |
| AACTAGCTAAATTGGAAAGT+AGG | - | chr5_4:67710614-67710633 | None:intergenic | 30.0% | |
| CGAAAAGTTGACATGTTTAT+AGG | - | chr5_4:67710773-67710792 | None:intergenic | 30.0% | |
| !! | AGTCGAAGGAATATTTTAGA+GGG | - | chr5_4:67710803-67710822 | None:intergenic | 30.0% |
| !! | AAGTCGAAGGAATATTTTAG+AGG | - | chr5_4:67710804-67710823 | None:intergenic | 30.0% |
| AGATTCTATGAGAGTTAACT+TGG | - | chr5_4:67711582-67711601 | None:intergenic | 30.0% | |
| !!! | AATTTTTTGGCAGTTTTTCG+TGG | - | chr5_4:67711616-67711635 | None:intergenic | 30.0% |
| ATGCATAATATATGCAAGGT+TGG | + | chr5_4:67712184-67712203 | Msa0866250:intron | 30.0% | |
| TTCAACATATTGTATTGCAG+TGG | + | chr5_4:67712383-67712402 | Msa0866250:intron | 30.0% | |
| ! | TAATAGGCTTCTTGAACTTT+TGG | + | chr5_4:67712407-67712426 | Msa0866250:CDS | 30.0% |
| TCCATGGTTGTAAATTCTTT+AGG | + | chr5_4:67712592-67712611 | Msa0866250:CDS | 30.0% | |
| GTTGTAAATTCTTTAGGCTT+AGG | + | chr5_4:67712598-67712617 | Msa0866250:CDS | 30.0% | |
| CCTTGAAGAATTTGATACTT+GGG | - | chr5_4:67712667-67712686 | None:intergenic | 30.0% | |
| ! | AACTTTTGTACTCAGATTCT+AGG | + | chr5_4:67712689-67712708 | Msa0866250:CDS | 30.0% |
| ACTACTAACTAGTACACTCT+TGG | - | chr5_4:67709549-67709568 | None:intergenic | 35.0% | |
| TAGCATTTCTTGTTCTCTTC+TGG | + | chr5_4:67709694-67709713 | Msa0866250:CDS | 35.0% | |
| AGCATTTCTTGTTCTCTTCT+GGG | + | chr5_4:67709695-67709714 | Msa0866250:CDS | 35.0% | |
| !! | GAAGAGAATTAGGAGTATTG+AGG | - | chr5_4:67709743-67709762 | None:intergenic | 35.0% |
| TACTACCTTCTCCACTTAAA+AGG | - | chr5_4:67709916-67709935 | None:intergenic | 35.0% | |
| ! | GAATGTTTGTGCAGCAATTT+TGG | + | chr5_4:67710046-67710065 | Msa0866250:intron | 35.0% |
| !! | CTTTAGCTTCTGGGATATTT+GGG | + | chr5_4:67710135-67710154 | Msa0866250:CDS | 35.0% |
| TATAGCCTTCATTCATGGAT+GGG | + | chr5_4:67710203-67710222 | Msa0866250:CDS | 35.0% | |
| TATCTTGACACCTATTCATC+AGG | + | chr5_4:67710421-67710440 | Msa0866250:intron | 35.0% | |
| TTGGGTCAGAATTCTCTAAT+TGG | - | chr5_4:67710649-67710668 | None:intergenic | 35.0% | |
| TTATAGGGACTAAAAGTCGA+AGG | - | chr5_4:67710817-67710836 | None:intergenic | 35.0% | |
| AACAAAAGAGGGGCAAAAAT+AGG | + | chr5_4:67711638-67711657 | Msa0866250:intron | 35.0% | |
| TTTGAGTATGCGAGATTATG+CGG | + | chr5_4:67711770-67711789 | Msa0866250:intron | 35.0% | |
| !!! | TTAAGCTATTTTGGTACGGT+TGG | + | chr5_4:67711805-67711824 | Msa0866250:intron | 35.0% |
| TGGTTAGAGTTTAACTCAGT+TGG | + | chr5_4:67712153-67712172 | Msa0866250:intron | 35.0% | |
| TTAGAGTTTAACTCAGTTGG+TGG | + | chr5_4:67712156-67712175 | Msa0866250:intron | 35.0% | |
| TAGAGTTTAACTCAGTTGGT+GGG | + | chr5_4:67712157-67712176 | Msa0866250:intron | 35.0% | |
| AATCCAGACACTACAAAGAT+TGG | + | chr5_4:67712213-67712232 | Msa0866250:intron | 35.0% | |
| TAACCAATCTTTGTAGTGTC+TGG | - | chr5_4:67712219-67712238 | None:intergenic | 35.0% | |
| ATTGTATTGCAGTGGCTAAT+AGG | + | chr5_4:67712391-67712410 | Msa0866250:intron | 35.0% | |
| TTACCATGGCATGTATTTCT+TGG | + | chr5_4:67712466-67712485 | Msa0866250:CDS | 35.0% | |
| GCCTAAAGAATTTACAACCA+TGG | - | chr5_4:67712596-67712615 | None:intergenic | 35.0% | |
| CCCAAGTATCAAATTCTTCA+AGG | + | chr5_4:67712664-67712683 | Msa0866250:CDS | 35.0% | |
| GCCTTGAAGAATTTGATACT+TGG | - | chr5_4:67712668-67712687 | None:intergenic | 35.0% | |
| CTAACTAGTACACTCTTGGA+TGG | - | chr5_4:67709545-67709564 | None:intergenic | 40.0% | |
| TCCTAATTCTCTTCCTCAAC+AGG | + | chr5_4:67709749-67709768 | Msa0866250:CDS | 40.0% | |
| TCCTGTTGAGGAAGAGAATT+AGG | - | chr5_4:67709753-67709772 | None:intergenic | 40.0% | |
| !! | CAGCAATTTTGGTGCATAGA+TGG | + | chr5_4:67710057-67710076 | Msa0866250:intron | 40.0% |
| TCGGTGCATTTATGTCTTCA+AGG | + | chr5_4:67710107-67710126 | Msa0866250:CDS | 40.0% | |
| CGGTGCATTTATGTCTTCAA+GGG | + | chr5_4:67710108-67710127 | Msa0866250:CDS | 40.0% | |
| GGTGCATTTATGTCTTCAAG+GGG | + | chr5_4:67710109-67710128 | Msa0866250:CDS | 40.0% | |
| !! | GCTTTAGCTTCTGGGATATT+TGG | + | chr5_4:67710134-67710153 | Msa0866250:CDS | 40.0% |
| !! | CTTCTGGGATATTTGGGATT+TGG | + | chr5_4:67710141-67710160 | Msa0866250:CDS | 40.0% |
| CCACAATCCCATCATTTACT+TGG | - | chr5_4:67710175-67710194 | None:intergenic | 40.0% | |
| ! | CCAAGTAAATGATGGGATTG+TGG | + | chr5_4:67710172-67710191 | Msa0866250:CDS | 40.0% |
| CTATAGCCTTCATTCATGGA+TGG | + | chr5_4:67710202-67710221 | Msa0866250:CDS | 40.0% | |
| TCAAACCCATCCATGAATGA+AGG | - | chr5_4:67710211-67710230 | None:intergenic | 40.0% | |
| !! | TGAATGATTGATGACGACCT+CGG | + | chr5_4:67710587-67710606 | Msa0866250:intron | 40.0% |
| TAAATTGGAAAGTAGGTCCG+AGG | - | chr5_4:67710607-67710626 | None:intergenic | 40.0% | |
| AGAGAATTCTGACCCAAAGA+AGG | + | chr5_4:67710652-67710671 | Msa0866250:intron | 40.0% | |
| ACAAGACGAATGCTTCTGTT+GGG | - | chr5_4:67710691-67710710 | None:intergenic | 40.0% | |
| AACAAGACGAATGCTTCTGT+TGG | - | chr5_4:67710692-67710711 | None:intergenic | 40.0% | |
| ! | AGAGTTTAACTCAGTTGGTG+GGG | + | chr5_4:67712158-67712177 | Msa0866250:intron | 40.0% |
| AAATGCGAACAGTGAGGATA+AGG | + | chr5_4:67712440-67712459 | Msa0866250:CDS | 40.0% | |
| TGAGGATAAGGATCTTACCA+TGG | + | chr5_4:67712452-67712471 | Msa0866250:CDS | 40.0% | |
| TGGCCTATACACTTATGCAT+TGG | + | chr5_4:67712486-67712505 | Msa0866250:CDS | 40.0% | |
| CTGCCAATGCATAAGTGTAT+AGG | - | chr5_4:67712492-67712511 | None:intergenic | 40.0% | |
| ! | TTATGCATTGGCAGTAGCAA+CGG | + | chr5_4:67712498-67712517 | Msa0866250:CDS | 40.0% |
| CCAGAATAACAAAGCCACTA+AGG | - | chr5_4:67712633-67712652 | None:intergenic | 40.0% | |
| !! | CCTTAGTGGCTTTGTTATTC+TGG | + | chr5_4:67712630-67712649 | Msa0866250:CDS | 40.0% |
| TGGTCACAAGCGAATTAAGA+TGG | + | chr5_4:67712794-67712813 | Msa0866250:three_prime_UTR | 40.0% | |
| AAGAGCAAAGGGAGTAGTGA+GGG | - | chr5_4:67709648-67709667 | None:intergenic | 45.0% | |
| AAAGAGCAAAGGGAGTAGTG+AGG | - | chr5_4:67709649-67709668 | None:intergenic | 45.0% | |
| CTCTCGCAAGAAAGAGCAAA+GGG | - | chr5_4:67709659-67709678 | None:intergenic | 45.0% | |
| ACTCTCGCAAGAAAGAGCAA+AGG | - | chr5_4:67709660-67709679 | None:intergenic | 45.0% | |
| CTCTTTCTTGCGAGAGTTTG+TGG | + | chr5_4:67709663-67709682 | Msa0866250:CDS | 45.0% | |
| GCATAGATGAGATCCTGTTG+AGG | - | chr5_4:67709765-67709784 | None:intergenic | 45.0% | |
| AATCCAATGACCATGAGCAC+AGG | - | chr5_4:67709890-67709909 | None:intergenic | 45.0% | |
| GTCAAGGGGGTTGAAGAAAT+CGG | + | chr5_4:67710088-67710107 | Msa0866250:CDS | 45.0% | |
| GCATTTATGTCTTCAAGGGG+TGG | + | chr5_4:67710112-67710131 | Msa0866250:CDS | 45.0% | |
| !! | TGTATCACTCTTTGGAGCTC+AGG | + | chr5_4:67710235-67710254 | Msa0866250:CDS | 45.0% |
| ! | TTCTTGAACTTTTGGCACCG+AGG | + | chr5_4:67712415-67712434 | Msa0866250:CDS | 45.0% |
| TCACTGTTCGCATTTCTCCT+CGG | - | chr5_4:67712435-67712454 | None:intergenic | 45.0% | |
| AGGCCAAGAAATACATGCCA+TGG | - | chr5_4:67712472-67712491 | None:intergenic | 45.0% | |
| TTAGGTCTTGCTCTCCTTAG+TGG | + | chr5_4:67712616-67712635 | Msa0866250:CDS | 45.0% | |
| !! | CAAAAATTAAATTAAAAATA+GGG | - | chr5_4:67710863-67710882 | None:intergenic | 5.0% |
| !! | ACAAAAATTAAATTAAAAAT+AGG | - | chr5_4:67710864-67710883 | None:intergenic | 5.0% |
| !!! | TATAATATTTTGAATTTTTT+TGG | + | chr5_4:67711049-67711068 | Msa0866250:intron | 5.0% |
| ! | GTGAGTCACTGACTAGTGAG+AGG | + | chr5_4:67709567-67709586 | Msa0866250:five_prime_UTR | 50.0% |
| GAGTAGTGAGGGAAAGACAG+TGG | - | chr5_4:67709637-67709656 | None:intergenic | 50.0% | |
| TCTTGTTCTCTTCTGGGCTC+TGG | + | chr5_4:67709701-67709720 | Msa0866250:CDS | 50.0% | |
| CAATGACCATGAGCACAGGA+TGG | - | chr5_4:67709886-67709905 | None:intergenic | 50.0% | |
| CATCCTGTGCTCATGGTCAT+TGG | + | chr5_4:67709884-67709903 | Msa0866250:CDS | 50.0% | |
| TTGGTGCATAGATGGTTGCC+TGG | + | chr5_4:67710065-67710084 | Msa0866250:CDS | 50.0% | |
| TGGTGCATAGATGGTTGCCT+GGG | + | chr5_4:67710066-67710085 | Msa0866250:CDS | 50.0% | |
| ATAGATGGTTGCCTGGGTCA+AGG | + | chr5_4:67710072-67710091 | Msa0866250:CDS | 50.0% | |
| TAGATGGTTGCCTGGGTCAA+GGG | + | chr5_4:67710073-67710092 | Msa0866250:CDS | 50.0% | |
| !! | AAGGGGTGGCTTTAGCTTCT+GGG | + | chr5_4:67710126-67710145 | Msa0866250:CDS | 50.0% |
| GAGGAGAAATGCGAACAGTG+AGG | + | chr5_4:67712434-67712453 | Msa0866250:CDS | 50.0% | |
| CATGGACTCAGTGCTGTGTT+TGG | - | chr5_4:67712578-67712597 | None:intergenic | 50.0% | |
| ! | CAAACACAGCACTGAGTCCA+TGG | + | chr5_4:67712576-67712595 | Msa0866250:CDS | 50.0% |
| GGTTCTCCATCCTGTGCTCA+TGG | + | chr5_4:67709877-67709896 | Msa0866250:intron | 55.0% | |
| AGATGGTTGCCTGGGTCAAG+GGG | + | chr5_4:67710074-67710093 | Msa0866250:CDS | 55.0% | |
| TTCTTCAACCCCCTTGACCC+AGG | - | chr5_4:67710086-67710105 | None:intergenic | 55.0% | |
| !! | CAAGGGGTGGCTTTAGCTTC+TGG | + | chr5_4:67710125-67710144 | Msa0866250:CDS | 55.0% |
| GCAGTAGCAACGGCTGAAAC+TGG | + | chr5_4:67712508-67712527 | Msa0866250:CDS | 55.0% | |
| GATGGTTGCCTGGGTCAAGG+GGG | + | chr5_4:67710075-67710094 | Msa0866250:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 67709534 | 67712830 | 67709534 | ID=Msa0866250;Name=Msa0866250 |
| chr5_4 | mRNA | 67709534 | 67712830 | 67709534 | ID=Msa0866250-mRNA-1;Parent=Msa0866250;Name=Msa0866250-mRNA-1;_AED=0.11;_eAED=0.11;_QI=96|1|1|1|1|1|4|104|242 |
| chr5_4 | exon | 67709534 | 67709785 | 67709534 | ID=Msa0866250-mRNA-1:exon:21409;Parent=Msa0866250-mRNA-1 |
| chr5_4 | exon | 67709878 | 67709929 | 67709878 | ID=Msa0866250-mRNA-1:exon:21410;Parent=Msa0866250-mRNA-1 |
| chr5_4 | exon | 67710060 | 67710256 | 67710060 | ID=Msa0866250-mRNA-1:exon:21411;Parent=Msa0866250-mRNA-1 |
| chr5_4 | exon | 67712403 | 67712830 | 67712403 | ID=Msa0866250-mRNA-1:exon:21412;Parent=Msa0866250-mRNA-1 |
| chr5_4 | five_prime_UTR | 67709534 | 67709629 | 67709534 | ID=Msa0866250-mRNA-1:five_prime_utr;Parent=Msa0866250-mRNA-1 |
| chr5_4 | CDS | 67709630 | 67709785 | 67709630 | ID=Msa0866250-mRNA-1:cds;Parent=Msa0866250-mRNA-1 |
| chr5_4 | CDS | 67709878 | 67709929 | 67709878 | ID=Msa0866250-mRNA-1:cds;Parent=Msa0866250-mRNA-1 |
| chr5_4 | CDS | 67710060 | 67710256 | 67710060 | ID=Msa0866250-mRNA-1:cds;Parent=Msa0866250-mRNA-1 |
| chr5_4 | CDS | 67712403 | 67712726 | 67712403 | ID=Msa0866250-mRNA-1:cds;Parent=Msa0866250-mRNA-1 |
| chr5_4 | three_prime_UTR | 67712727 | 67712830 | 67712727 | ID=Msa0866250-mRNA-1:three_prime_utr;Parent=Msa0866250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
