Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887020 | AES62745.2 | 86.885 | 183 | 19 | 1 | 1 | 178 | 1 | 183 | 2.29e-112 | 334 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887020 | sp|O82368|Y2988_ARATH | 36.842 | 171 | 102 | 2 | 1 | 166 | 1 | 170 | 4.06e-32 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887020 | G7IEU4 | 86.885 | 183 | 19 | 1 | 1 | 178 | 1 | 183 | 1.09e-112 | 334 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0657970 | Msa0887020 | 0.808058 | 3.731892e-50 | -8.615850e-47 |
| Msa0669320 | Msa0887020 | 0.800981 | 1.116943e-48 | -8.615850e-47 |
| Msa0678930 | Msa0887020 | 0.801034 | 1.089017e-48 | -8.615850e-47 |
| Msa0697060 | Msa0887020 | 0.819129 | 1.365861e-52 | -8.615850e-47 |
| Msa0726140 | Msa0887020 | 0.808066 | 3.717776e-50 | -8.615850e-47 |
| Msa0766630 | Msa0887020 | 0.806733 | 7.125459e-50 | -8.615850e-47 |
| Msa0200260 | Msa0887020 | 0.815751 | 7.873774e-52 | -8.615850e-47 |
| Msa0221060 | Msa0887020 | 0.808275 | 3.354978e-50 | -8.615850e-47 |
| Msa0231000 | Msa0887020 | 0.812177 | 4.833674e-51 | -8.615850e-47 |
| Msa0235140 | Msa0887020 | 0.801783 | 7.650432e-49 | -8.615850e-47 |
| Msa0406120 | Msa0887020 | 0.823408 | 1.407566e-53 | -8.615850e-47 |
| Msa0431690 | Msa0887020 | 0.816608 | 5.067138e-52 | -8.615850e-47 |
| Msa0437990 | Msa0887020 | 0.820254 | 7.557509e-53 | -8.615850e-47 |
| Msa0452620 | Msa0887020 | 0.821034 | 5.002485e-53 | -8.615850e-47 |
| Msa0262520 | Msa0887020 | 0.803258 | 3.798475e-49 | -8.615850e-47 |
| Msa0287650 | Msa0887020 | 0.812596 | 3.916051e-51 | -8.615850e-47 |
| Msa0309020 | Msa0887020 | 0.801853 | 7.401341e-49 | -8.615850e-47 |
| Msa0313760 | Msa0887020 | 0.806330 | 8.666600e-50 | -8.615850e-47 |
| Msa0338110 | Msa0887020 | 0.803487 | 3.405546e-49 | -8.615850e-47 |
| Msa0512900 | Msa0887020 | 0.805819 | 1.110322e-49 | -8.615850e-47 |
| Msa0885280 | Msa0887020 | 0.823609 | 1.263116e-53 | -8.615850e-47 |
| Msa0885290 | Msa0887020 | 0.828508 | 8.648661e-55 | -8.615850e-47 |
| Msa0887020 | Msa0887990 | 0.808491 | 3.017116e-50 | -8.615850e-47 |
| Msa0887020 | Msa0935910 | 0.807142 | 5.841109e-50 | -8.615850e-47 |
| Msa0887020 | Msa0947660 | 0.800922 | 1.147997e-48 | -8.615850e-47 |
| Msa0887020 | Msa0954920 | 0.805905 | 1.065069e-49 | -8.615850e-47 |
| Msa0887020 | Msa1079180 | 0.817091 | 3.947438e-52 | -8.615850e-47 |
| Msa0887020 | Msa1136090 | 0.824253 | 8.922867e-54 | -8.615850e-47 |
| Msa0887020 | Msa1160670 | 0.810970 | 8.845677e-51 | -8.615850e-47 |
| Msa0887020 | Msa1327680 | 0.806273 | 8.912931e-50 | -8.615850e-47 |
| Msa0887020 | Msa1392260 | 0.803855 | 2.856062e-49 | -8.615850e-47 |
| Msa0887020 | Msa1397610 | 0.800301 | 1.536560e-48 | -8.615850e-47 |
| Msa0887020 | Msa1420140 | 0.808265 | 3.372187e-50 | -8.615850e-47 |
| Msa0887020 | Msa1438250 | 0.817049 | 4.033897e-52 | -8.615850e-47 |
| Msa0887020 | Msa1452240 | 0.806505 | 7.962240e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887020 | MtrunA17_Chr4g0051721 | 86.339 | 183 | 20 | 1 | 1 | 178 | 1 | 183 | 2.52e-116 | 328 |
| Msa0887020 | MtrunA17_Chr1g0207381 | 86.339 | 183 | 20 | 1 | 1 | 178 | 1 | 183 | 6.64e-116 | 333 |
| Msa0887020 | MtrunA17_Chr8g0360271 | 32.479 | 117 | 73 | 3 | 33 | 145 | 24 | 138 | 3.37e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887020 | AT5G27260.1 | 40.361 | 166 | 88 | 3 | 1 | 161 | 1 | 160 | 4.44e-36 | 128 |
| Msa0887020 | AT2G29880.1 | 36.842 | 171 | 102 | 2 | 1 | 166 | 1 | 170 | 4.13e-33 | 120 |
| Msa0887020 | AT1G30140.2 | 32.653 | 147 | 90 | 2 | 12 | 153 | 7 | 149 | 8.03e-26 | 99.8 |
| Msa0887020 | AT1G30140.1 | 32.653 | 147 | 90 | 2 | 12 | 153 | 7 | 149 | 8.03e-26 | 99.8 |
Find 30 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCGTAACAACTCTGGTTT+TGG | 0.286642 | 6_1:+47787393 | Msa0887020:CDS |
| CAACTCATTAGTTTCTTCTA+TGG | 0.354978 | 6_1:-47787184 | None:intergenic |
| GAGCAAGAAAGTGAAAGTTT+TGG | 0.364343 | 6_1:+47787707 | Msa0887020:CDS |
| TCTGCTAAACGCAACCAAAA+AGG | 0.366750 | 6_1:+47788740 | Msa0887020:CDS |
| AGTATGGAGTAATTACTTAA+AGG | 0.368835 | 6_1:+47787455 | Msa0887020:CDS |
| GAGTTCTAAACCACTTCATT+TGG | 0.373953 | 6_1:-47787347 | None:intergenic |
| AGAGGGTTACATGATGCTAA+TGG | 0.387354 | 6_1:+47787234 | Msa0887020:CDS |
| TGAGTTGTTGTTCCTCTTGG+TGG | 0.396694 | 6_1:+47787200 | Msa0887020:CDS |
| GATTATTTGAAGATTCTTGT+TGG | 0.439501 | 6_1:+47787617 | Msa0887020:CDS |
| TTGAAGATTCTTGTTGGAGG+TGG | 0.445118 | 6_1:+47787623 | Msa0887020:CDS |
| ACACGGCTACTGAAGAAGTA+TGG | 0.447236 | 6_1:+47787439 | Msa0887020:CDS |
| TAATGAGTTGTTGTTCCTCT+TGG | 0.447268 | 6_1:+47787197 | Msa0887020:CDS |
| TCACAACAAGAAAATAATAG+AGG | 0.460305 | 6_1:+47787126 | Msa0887020:CDS |
| GAGGGTTACATGATGCTAAT+GGG | 0.468879 | 6_1:+47787235 | Msa0887020:CDS |
| ACGTTTATGCGTAACAACTC+TGG | 0.489769 | 6_1:+47787387 | Msa0887020:CDS |
| ACAAAGATGGCTATGTAGCT+TGG | 0.511243 | 6_1:+47787160 | Msa0887020:CDS |
| AAATAATAGAGGGAAGGGTA+AGG | 0.512824 | 6_1:+47787137 | Msa0887020:CDS |
| TTGGTGGATGCTATAAATAG+AGG | 0.536963 | 6_1:+47787216 | Msa0887020:CDS |
| ATTACTTGAGCCAAATGAAG+TGG | 0.539665 | 6_1:+47787337 | Msa0887020:CDS |
| CAAGAAAATAATAGAGGGAA+GGG | 0.542379 | 6_1:+47787132 | Msa0887020:CDS |
| TTGGAGGTGGAGTGTCTAGC+GGG | 0.545573 | 6_1:+47787636 | Msa0887020:CDS |
| ACAAGAAAATAATAGAGGGA+AGG | 0.566433 | 6_1:+47787131 | Msa0887020:CDS |
| CACAACAAGAAAATAATAGA+GGG | 0.595053 | 6_1:+47787127 | Msa0887020:CDS |
| TATTTGAAGATTCTTGTTGG+AGG | 0.595361 | 6_1:+47787620 | Msa0887020:CDS |
| TGGTGGATGCTATAAATAGA+GGG | 0.599601 | 6_1:+47787217 | Msa0887020:CDS |
| TTCTATAGCATTAGACGATG+AGG | 0.599696 | 6_1:+47787664 | Msa0887020:CDS |
| GGGAAGGGTAAGGACAAAGA+TGG | 0.603944 | 6_1:+47787147 | Msa0887020:CDS |
| GTTGGAGGTGGAGTGTCTAG+CGG | 0.610018 | 6_1:+47787635 | Msa0887020:CDS |
| TTCAGTTGCAAAGACTTACA+CGG | 0.635359 | 6_1:+47787422 | Msa0887020:CDS |
| TATTTATAGCATCCACCAAG+AGG | 0.660190 | 6_1:-47787212 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATCTAATCGAAAAAT+CGG | - | chr6_1:47787831-47787850 | None:intergenic | 15.0% |
| !!! | AAATATTTGGAACATAAAAT+TGG | + | chr6_1:47788475-47788494 | Msa0887020:intron | 15.0% |
| !! | AATAAATCTAATCGAAAAAT+CGG | - | chr6_1:47787831-47787850 | None:intergenic | 15.0% |
| !!! | AAATATTTGGAACATAAAAT+TGG | + | chr6_1:47788475-47788494 | Msa0887020:intron | 15.0% |
| !! | ATAAATCTAATCGAAAAATC+GGG | - | chr6_1:47787830-47787849 | None:intergenic | 20.0% |
| !!! | TAATTTTGTAATTTTGCTGA+AGG | + | chr6_1:47787999-47788018 | Msa0887020:intron | 20.0% |
| !! | AAATGTTACTATTCACTTAA+CGG | - | chr6_1:47788125-47788144 | None:intergenic | 20.0% |
| !!! | TTTTGAGGTTAAATTAGAAA+TGG | + | chr6_1:47788143-47788162 | Msa0887020:intron | 20.0% |
| !!! | TTTGAGGTTAAATTAGAAAT+GGG | + | chr6_1:47788144-47788163 | Msa0887020:intron | 20.0% |
| !! | ATAAATCTAATCGAAAAATC+GGG | - | chr6_1:47787830-47787849 | None:intergenic | 20.0% |
| !!! | TAATTTTGTAATTTTGCTGA+AGG | + | chr6_1:47787999-47788018 | Msa0887020:intron | 20.0% |
| !! | AAATGTTACTATTCACTTAA+CGG | - | chr6_1:47788125-47788144 | None:intergenic | 20.0% |
| !!! | TTTTGAGGTTAAATTAGAAA+TGG | + | chr6_1:47788143-47788162 | Msa0887020:intron | 20.0% |
| !!! | TTTGAGGTTAAATTAGAAAT+GGG | + | chr6_1:47788144-47788163 | Msa0887020:intron | 20.0% |
| ! | TCACAACAAGAAAATAATAG+AGG | + | chr6_1:47787126-47787145 | Msa0887020:CDS | 25.0% |
| ! | CACAACAAGAAAATAATAGA+GGG | + | chr6_1:47787127-47787146 | Msa0887020:CDS | 25.0% |
| !!! | AGTTTTTTGTGATTCAGTTT+TGG | - | chr6_1:47787310-47787329 | None:intergenic | 25.0% |
| ! | AGTATGGAGTAATTACTTAA+AGG | + | chr6_1:47787455-47787474 | Msa0887020:CDS | 25.0% |
| !!! | AATATTTTTGTGAGATGGAT+GGG | - | chr6_1:47787573-47787592 | None:intergenic | 25.0% |
| ! | GATTATTTGAAGATTCTTGT+TGG | + | chr6_1:47787617-47787636 | Msa0887020:CDS | 25.0% |
| !!! | ATTTTAGTCATTTTGGACTT+AGG | + | chr6_1:47787948-47787967 | Msa0887020:intron | 25.0% |
| !!! | TTTTAGTCATTTTGGACTTA+GGG | + | chr6_1:47787949-47787968 | Msa0887020:intron | 25.0% |
| !!! | TTATTTTACCAAGTTACAAG+AGG | + | chr6_1:47788047-47788066 | Msa0887020:intron | 25.0% |
| !! | TATTTTACCAAGTTACAAGA+GGG | + | chr6_1:47788048-47788067 | Msa0887020:intron | 25.0% |
| ! | CGGTAAAAATATAACACTAA+CGG | - | chr6_1:47788105-47788124 | None:intergenic | 25.0% |
| !! | AGTGAATAGTAACATTTTTG+AGG | + | chr6_1:47788128-47788147 | Msa0887020:intron | 25.0% |
| !!! | AGCTTTTAAAGTAAGAAGAT+AGG | - | chr6_1:47788212-47788231 | None:intergenic | 25.0% |
| !! | TCTTACTTTAAAAGCTTGTA+AGG | + | chr6_1:47788216-47788235 | Msa0887020:intron | 25.0% |
| ! | CATGTTGAACAATAAACAAT+TGG | + | chr6_1:47788521-47788540 | Msa0887020:intron | 25.0% |
| ! | ATGCAACAATTGTTTATTGT+TGG | - | chr6_1:47788591-47788610 | None:intergenic | 25.0% |
| ! | TCACAACAAGAAAATAATAG+AGG | + | chr6_1:47787126-47787145 | Msa0887020:CDS | 25.0% |
| ! | CACAACAAGAAAATAATAGA+GGG | + | chr6_1:47787127-47787146 | Msa0887020:CDS | 25.0% |
| !!! | AGTTTTTTGTGATTCAGTTT+TGG | - | chr6_1:47787310-47787329 | None:intergenic | 25.0% |
| ! | AGTATGGAGTAATTACTTAA+AGG | + | chr6_1:47787455-47787474 | Msa0887020:CDS | 25.0% |
| !!! | AATATTTTTGTGAGATGGAT+GGG | - | chr6_1:47787573-47787592 | None:intergenic | 25.0% |
| ! | GATTATTTGAAGATTCTTGT+TGG | + | chr6_1:47787617-47787636 | Msa0887020:CDS | 25.0% |
| !!! | ATTTTAGTCATTTTGGACTT+AGG | + | chr6_1:47787948-47787967 | Msa0887020:intron | 25.0% |
| !!! | TTTTAGTCATTTTGGACTTA+GGG | + | chr6_1:47787949-47787968 | Msa0887020:intron | 25.0% |
| !!! | TTATTTTACCAAGTTACAAG+AGG | + | chr6_1:47788047-47788066 | Msa0887020:intron | 25.0% |
| !! | TATTTTACCAAGTTACAAGA+GGG | + | chr6_1:47788048-47788067 | Msa0887020:intron | 25.0% |
| ! | CGGTAAAAATATAACACTAA+CGG | - | chr6_1:47788105-47788124 | None:intergenic | 25.0% |
| !! | AGTGAATAGTAACATTTTTG+AGG | + | chr6_1:47788128-47788147 | Msa0887020:intron | 25.0% |
| !!! | AGCTTTTAAAGTAAGAAGAT+AGG | - | chr6_1:47788212-47788231 | None:intergenic | 25.0% |
| !! | TCTTACTTTAAAAGCTTGTA+AGG | + | chr6_1:47788216-47788235 | Msa0887020:intron | 25.0% |
| ! | CATGTTGAACAATAAACAAT+TGG | + | chr6_1:47788521-47788540 | Msa0887020:intron | 25.0% |
| ! | ATGCAACAATTGTTTATTGT+TGG | - | chr6_1:47788591-47788610 | None:intergenic | 25.0% |
| ACAAGAAAATAATAGAGGGA+AGG | + | chr6_1:47787131-47787150 | Msa0887020:CDS | 30.0% | |
| CAAGAAAATAATAGAGGGAA+GGG | + | chr6_1:47787132-47787151 | Msa0887020:CDS | 30.0% | |
| ! | CAACTCATTAGTTTCTTCTA+TGG | - | chr6_1:47787187-47787206 | None:intergenic | 30.0% |
| !! | GAATATTTTTGTGAGATGGA+TGG | - | chr6_1:47787574-47787593 | None:intergenic | 30.0% |
| TATTTGAAGATTCTTGTTGG+AGG | + | chr6_1:47787620-47787639 | Msa0887020:CDS | 30.0% | |
| !!! | AGAAAGTGAAAGTTTTGGAA+TGG | + | chr6_1:47787712-47787731 | Msa0887020:CDS | 30.0% |
| !!! | GAAGGGTATTTTAGTCATTT+TGG | + | chr6_1:47787941-47787960 | Msa0887020:intron | 30.0% |
| !! | TTTAGTCATTTTGGACTTAG+GGG | + | chr6_1:47787950-47787969 | Msa0887020:intron | 30.0% |
| ! | GGTTAAATTAGAAATGGGTT+AGG | + | chr6_1:47788149-47788168 | Msa0887020:intron | 30.0% |
| CTTATCTCACAAACCTTAAT+GGG | - | chr6_1:47788175-47788194 | None:intergenic | 30.0% | |
| AAAACAACTCCAATTTCACT+TGG | + | chr6_1:47788323-47788342 | Msa0887020:intron | 30.0% | |
| AAACAACTCCAATTTCACTT+GGG | + | chr6_1:47788324-47788343 | Msa0887020:intron | 30.0% | |
| ! | TTTCTTTTCCCAAGTGAAAT+TGG | - | chr6_1:47788335-47788354 | None:intergenic | 30.0% |
| TAATAGATACACAGTTACCA+AGG | - | chr6_1:47788423-47788442 | None:intergenic | 30.0% | |
| ! | TTGTGCACTGGTAAAATATT+TGG | + | chr6_1:47788462-47788481 | Msa0887020:intron | 30.0% |
| ATGATAGAAGAAGATACATG+AGG | - | chr6_1:47788646-47788665 | None:intergenic | 30.0% | |
| ! | ACTTTTCTGCAAAAACAGAA+TGG | - | chr6_1:47788709-47788728 | None:intergenic | 30.0% |
| ACAAGAAAATAATAGAGGGA+AGG | + | chr6_1:47787131-47787150 | Msa0887020:CDS | 30.0% | |
| CAAGAAAATAATAGAGGGAA+GGG | + | chr6_1:47787132-47787151 | Msa0887020:CDS | 30.0% | |
| ! | CAACTCATTAGTTTCTTCTA+TGG | - | chr6_1:47787187-47787206 | None:intergenic | 30.0% |
| !! | GAATATTTTTGTGAGATGGA+TGG | - | chr6_1:47787574-47787593 | None:intergenic | 30.0% |
| TATTTGAAGATTCTTGTTGG+AGG | + | chr6_1:47787620-47787639 | Msa0887020:CDS | 30.0% | |
| !!! | AGAAAGTGAAAGTTTTGGAA+TGG | + | chr6_1:47787712-47787731 | Msa0887020:CDS | 30.0% |
| !!! | GAAGGGTATTTTAGTCATTT+TGG | + | chr6_1:47787941-47787960 | Msa0887020:intron | 30.0% |
| !! | TTTAGTCATTTTGGACTTAG+GGG | + | chr6_1:47787950-47787969 | Msa0887020:intron | 30.0% |
| ! | GGTTAAATTAGAAATGGGTT+AGG | + | chr6_1:47788149-47788168 | Msa0887020:intron | 30.0% |
| CTTATCTCACAAACCTTAAT+GGG | - | chr6_1:47788175-47788194 | None:intergenic | 30.0% | |
| AAAACAACTCCAATTTCACT+TGG | + | chr6_1:47788323-47788342 | Msa0887020:intron | 30.0% | |
| AAACAACTCCAATTTCACTT+GGG | + | chr6_1:47788324-47788343 | Msa0887020:intron | 30.0% | |
| ! | TTTCTTTTCCCAAGTGAAAT+TGG | - | chr6_1:47788335-47788354 | None:intergenic | 30.0% |
| TAATAGATACACAGTTACCA+AGG | - | chr6_1:47788423-47788442 | None:intergenic | 30.0% | |
| ! | TTGTGCACTGGTAAAATATT+TGG | + | chr6_1:47788462-47788481 | Msa0887020:intron | 30.0% |
| ATGATAGAAGAAGATACATG+AGG | - | chr6_1:47788646-47788665 | None:intergenic | 30.0% | |
| ! | ACTTTTCTGCAAAAACAGAA+TGG | - | chr6_1:47788709-47788728 | None:intergenic | 30.0% |
| AAATAATAGAGGGAAGGGTA+AGG | + | chr6_1:47787137-47787156 | Msa0887020:CDS | 35.0% | |
| ! | TAATGAGTTGTTGTTCCTCT+TGG | + | chr6_1:47787197-47787216 | Msa0887020:CDS | 35.0% |
| TATTTATAGCATCCACCAAG+AGG | - | chr6_1:47787215-47787234 | None:intergenic | 35.0% | |
| ! | TTGGTGGATGCTATAAATAG+AGG | + | chr6_1:47787216-47787235 | Msa0887020:CDS | 35.0% |
| ! | TGGTGGATGCTATAAATAGA+GGG | + | chr6_1:47787217-47787236 | Msa0887020:CDS | 35.0% |
| ATTACTTGAGCCAAATGAAG+TGG | + | chr6_1:47787337-47787356 | Msa0887020:CDS | 35.0% | |
| !! | GAGTTCTAAACCACTTCATT+TGG | - | chr6_1:47787350-47787369 | None:intergenic | 35.0% |
| !!! | TAACAACTCTGGTTTTGGAT+GGG | + | chr6_1:47787398-47787417 | Msa0887020:CDS | 35.0% |
| TTCAGTTGCAAAGACTTACA+CGG | + | chr6_1:47787422-47787441 | Msa0887020:CDS | 35.0% | |
| !! | CCTCGAATATTTTTGTGAGA+TGG | - | chr6_1:47787578-47787597 | None:intergenic | 35.0% |
| CCATCTCACAAAAATATTCG+AGG | + | chr6_1:47787575-47787594 | Msa0887020:CDS | 35.0% | |
| TTCTATAGCATTAGACGATG+AGG | + | chr6_1:47787664-47787683 | Msa0887020:CDS | 35.0% | |
| ! | GAGCAAGAAAGTGAAAGTTT+TGG | + | chr6_1:47787707-47787726 | Msa0887020:CDS | 35.0% |
| !!! | AGTGAAAGTTTTGGAATGGA+AGG | + | chr6_1:47787716-47787735 | Msa0887020:CDS | 35.0% |
| !!! | GTGAAAGTTTTGGAATGGAA+GGG | + | chr6_1:47787717-47787736 | Msa0887020:CDS | 35.0% |
| GCTATGAATGCATCACTATT+GGG | - | chr6_1:47787755-47787774 | None:intergenic | 35.0% | |
| TGCTATGAATGCATCACTAT+TGG | - | chr6_1:47787756-47787775 | None:intergenic | 35.0% | |
| ATACCAACCAAAACTACACA+CGG | - | chr6_1:47787903-47787922 | None:intergenic | 35.0% | |
| GCTTATCTCACAAACCTTAA+TGG | - | chr6_1:47788176-47788195 | None:intergenic | 35.0% | |
| GAAGATAGGCTCACTTAATT+GGG | - | chr6_1:47788198-47788217 | None:intergenic | 35.0% | |
| AGAAGATAGGCTCACTTAAT+TGG | - | chr6_1:47788199-47788218 | None:intergenic | 35.0% | |
| ! | GGAAATAAGGAGTGTGATTA+GGG | - | chr6_1:47788258-47788277 | None:intergenic | 35.0% |
| ATTAGTTGAGGAGGGAAATA+AGG | - | chr6_1:47788271-47788290 | None:intergenic | 35.0% | |
| ! | AAAAGCATATTGTGGAAGCT+AGG | - | chr6_1:47788294-47788313 | None:intergenic | 35.0% |
| ! | ACACGTGTAAAAGCATATTG+TGG | - | chr6_1:47788302-47788321 | None:intergenic | 35.0% |
| AAACTAATCCTAGCTTCCTT+TGG | + | chr6_1:47788353-47788372 | Msa0887020:intron | 35.0% | |
| TAAGTATGTGTGCCAACAAT+TGG | + | chr6_1:47788557-47788576 | Msa0887020:intron | 35.0% | |
| AAATAATAGAGGGAAGGGTA+AGG | + | chr6_1:47787137-47787156 | Msa0887020:CDS | 35.0% | |
| ! | TAATGAGTTGTTGTTCCTCT+TGG | + | chr6_1:47787197-47787216 | Msa0887020:CDS | 35.0% |
| TATTTATAGCATCCACCAAG+AGG | - | chr6_1:47787215-47787234 | None:intergenic | 35.0% | |
| ! | TTGGTGGATGCTATAAATAG+AGG | + | chr6_1:47787216-47787235 | Msa0887020:CDS | 35.0% |
| ! | TGGTGGATGCTATAAATAGA+GGG | + | chr6_1:47787217-47787236 | Msa0887020:CDS | 35.0% |
| ATTACTTGAGCCAAATGAAG+TGG | + | chr6_1:47787337-47787356 | Msa0887020:CDS | 35.0% | |
| !! | GAGTTCTAAACCACTTCATT+TGG | - | chr6_1:47787350-47787369 | None:intergenic | 35.0% |
| !!! | TAACAACTCTGGTTTTGGAT+GGG | + | chr6_1:47787398-47787417 | Msa0887020:CDS | 35.0% |
| TTCAGTTGCAAAGACTTACA+CGG | + | chr6_1:47787422-47787441 | Msa0887020:CDS | 35.0% | |
| !! | CCTCGAATATTTTTGTGAGA+TGG | - | chr6_1:47787578-47787597 | None:intergenic | 35.0% |
| CCATCTCACAAAAATATTCG+AGG | + | chr6_1:47787575-47787594 | Msa0887020:CDS | 35.0% | |
| TTCTATAGCATTAGACGATG+AGG | + | chr6_1:47787664-47787683 | Msa0887020:CDS | 35.0% | |
| ! | GAGCAAGAAAGTGAAAGTTT+TGG | + | chr6_1:47787707-47787726 | Msa0887020:CDS | 35.0% |
| !!! | AGTGAAAGTTTTGGAATGGA+AGG | + | chr6_1:47787716-47787735 | Msa0887020:CDS | 35.0% |
| !!! | GTGAAAGTTTTGGAATGGAA+GGG | + | chr6_1:47787717-47787736 | Msa0887020:CDS | 35.0% |
| GCTATGAATGCATCACTATT+GGG | - | chr6_1:47787755-47787774 | None:intergenic | 35.0% | |
| TGCTATGAATGCATCACTAT+TGG | - | chr6_1:47787756-47787775 | None:intergenic | 35.0% | |
| ATACCAACCAAAACTACACA+CGG | - | chr6_1:47787903-47787922 | None:intergenic | 35.0% | |
| GCTTATCTCACAAACCTTAA+TGG | - | chr6_1:47788176-47788195 | None:intergenic | 35.0% | |
| GAAGATAGGCTCACTTAATT+GGG | - | chr6_1:47788198-47788217 | None:intergenic | 35.0% | |
| AGAAGATAGGCTCACTTAAT+TGG | - | chr6_1:47788199-47788218 | None:intergenic | 35.0% | |
| ! | GGAAATAAGGAGTGTGATTA+GGG | - | chr6_1:47788258-47788277 | None:intergenic | 35.0% |
| ATTAGTTGAGGAGGGAAATA+AGG | - | chr6_1:47788271-47788290 | None:intergenic | 35.0% | |
| ! | AAAAGCATATTGTGGAAGCT+AGG | - | chr6_1:47788294-47788313 | None:intergenic | 35.0% |
| ! | ACACGTGTAAAAGCATATTG+TGG | - | chr6_1:47788302-47788321 | None:intergenic | 35.0% |
| AAACTAATCCTAGCTTCCTT+TGG | + | chr6_1:47788353-47788372 | Msa0887020:intron | 35.0% | |
| TAAGTATGTGTGCCAACAAT+TGG | + | chr6_1:47788557-47788576 | Msa0887020:intron | 35.0% | |
| ACAAAGATGGCTATGTAGCT+TGG | + | chr6_1:47787160-47787179 | Msa0887020:CDS | 40.0% | |
| AGAGGGTTACATGATGCTAA+TGG | + | chr6_1:47787234-47787253 | Msa0887020:CDS | 40.0% | |
| GAGGGTTACATGATGCTAAT+GGG | + | chr6_1:47787235-47787254 | Msa0887020:CDS | 40.0% | |
| !! | TTTTGGTATTGAGCTGAGGA+AGG | - | chr6_1:47787293-47787312 | None:intergenic | 40.0% |
| !! | TCAGTTTTGGTATTGAGCTG+AGG | - | chr6_1:47787297-47787316 | None:intergenic | 40.0% |
| ACGTTTATGCGTAACAACTC+TGG | + | chr6_1:47787387-47787406 | Msa0887020:CDS | 40.0% | |
| !! | ATGCGTAACAACTCTGGTTT+TGG | + | chr6_1:47787393-47787412 | Msa0887020:CDS | 40.0% |
| !!! | GTAACAACTCTGGTTTTGGA+TGG | + | chr6_1:47787397-47787416 | Msa0887020:CDS | 40.0% |
| TTGAAGATTCTTGTTGGAGG+TGG | + | chr6_1:47787623-47787642 | Msa0887020:CDS | 40.0% | |
| TACGGTGGTTCATAGTTATC+TGG | - | chr6_1:47787779-47787798 | None:intergenic | 40.0% | |
| ! | TGGTTGGTATTCGCAGAATT+CGG | + | chr6_1:47787913-47787932 | Msa0887020:intron | 40.0% |
| !!! | TTTTGGACTTAGGGGCATTT+TGG | + | chr6_1:47787958-47787977 | Msa0887020:intron | 40.0% |
| !! | GGGCATTTTGGTCATTTTGA+GGG | + | chr6_1:47787970-47787989 | Msa0887020:intron | 40.0% |
| !! | ATTTTGGTCATTTTGAGGGC+AGG | + | chr6_1:47787974-47787993 | Msa0887020:intron | 40.0% |
| !! | TTTTGGTCATTTTGAGGGCA+GGG | + | chr6_1:47787975-47787994 | Msa0887020:intron | 40.0% |
| TACTACACCCTCTTGTAACT+TGG | - | chr6_1:47788058-47788077 | None:intergenic | 40.0% | |
| TAACACTAACGGTCACTTAG+CGG | - | chr6_1:47788094-47788113 | None:intergenic | 40.0% | |
| ! | GGGAAATAAGGAGTGTGATT+AGG | - | chr6_1:47788259-47788278 | None:intergenic | 40.0% |
| !! | AAGCTAGGATTAGTTGAGGA+GGG | - | chr6_1:47788279-47788298 | None:intergenic | 40.0% |
| TCACGTATAACAGCTTCCAA+AGG | - | chr6_1:47788372-47788391 | None:intergenic | 40.0% | |
| CAAATCTTCATGTTGTGCAC+TGG | + | chr6_1:47788450-47788469 | Msa0887020:intron | 40.0% | |
| TCTGCTAAACGCAACCAAAA+AGG | + | chr6_1:47788740-47788759 | Msa0887020:CDS | 40.0% | |
| AAACGCAACCAAAAAGGACA+CGG | + | chr6_1:47788746-47788765 | Msa0887020:CDS | 40.0% | |
| ACAAAGATGGCTATGTAGCT+TGG | + | chr6_1:47787160-47787179 | Msa0887020:CDS | 40.0% | |
| AGAGGGTTACATGATGCTAA+TGG | + | chr6_1:47787234-47787253 | Msa0887020:CDS | 40.0% | |
| GAGGGTTACATGATGCTAAT+GGG | + | chr6_1:47787235-47787254 | Msa0887020:CDS | 40.0% | |
| !! | TTTTGGTATTGAGCTGAGGA+AGG | - | chr6_1:47787293-47787312 | None:intergenic | 40.0% |
| !! | TCAGTTTTGGTATTGAGCTG+AGG | - | chr6_1:47787297-47787316 | None:intergenic | 40.0% |
| ACGTTTATGCGTAACAACTC+TGG | + | chr6_1:47787387-47787406 | Msa0887020:CDS | 40.0% | |
| !! | ATGCGTAACAACTCTGGTTT+TGG | + | chr6_1:47787393-47787412 | Msa0887020:CDS | 40.0% |
| !!! | GTAACAACTCTGGTTTTGGA+TGG | + | chr6_1:47787397-47787416 | Msa0887020:CDS | 40.0% |
| TTGAAGATTCTTGTTGGAGG+TGG | + | chr6_1:47787623-47787642 | Msa0887020:CDS | 40.0% | |
| TACGGTGGTTCATAGTTATC+TGG | - | chr6_1:47787779-47787798 | None:intergenic | 40.0% | |
| ! | TGGTTGGTATTCGCAGAATT+CGG | + | chr6_1:47787913-47787932 | Msa0887020:intron | 40.0% |
| !!! | TTTTGGACTTAGGGGCATTT+TGG | + | chr6_1:47787958-47787977 | Msa0887020:intron | 40.0% |
| !! | GGGCATTTTGGTCATTTTGA+GGG | + | chr6_1:47787970-47787989 | Msa0887020:intron | 40.0% |
| !! | ATTTTGGTCATTTTGAGGGC+AGG | + | chr6_1:47787974-47787993 | Msa0887020:intron | 40.0% |
| !! | TTTTGGTCATTTTGAGGGCA+GGG | + | chr6_1:47787975-47787994 | Msa0887020:intron | 40.0% |
| TACTACACCCTCTTGTAACT+TGG | - | chr6_1:47788058-47788077 | None:intergenic | 40.0% | |
| TAACACTAACGGTCACTTAG+CGG | - | chr6_1:47788094-47788113 | None:intergenic | 40.0% | |
| ! | GGGAAATAAGGAGTGTGATT+AGG | - | chr6_1:47788259-47788278 | None:intergenic | 40.0% |
| !! | AAGCTAGGATTAGTTGAGGA+GGG | - | chr6_1:47788279-47788298 | None:intergenic | 40.0% |
| TCACGTATAACAGCTTCCAA+AGG | - | chr6_1:47788372-47788391 | None:intergenic | 40.0% | |
| CAAATCTTCATGTTGTGCAC+TGG | + | chr6_1:47788450-47788469 | Msa0887020:intron | 40.0% | |
| TCTGCTAAACGCAACCAAAA+AGG | + | chr6_1:47788740-47788759 | Msa0887020:CDS | 40.0% | |
| AAACGCAACCAAAAAGGACA+CGG | + | chr6_1:47788746-47788765 | Msa0887020:CDS | 40.0% | |
| ! | TGAGTTGTTGTTCCTCTTGG+TGG | + | chr6_1:47787200-47787219 | Msa0887020:CDS | 45.0% |
| ACACGGCTACTGAAGAAGTA+TGG | + | chr6_1:47787439-47787458 | Msa0887020:CDS | 45.0% | |
| !! | TTAGGTGATGGAGGTTGGTA+CGG | - | chr6_1:47787797-47787816 | None:intergenic | 45.0% |
| ! | TGTTACAGGTTAGGTGATGG+AGG | - | chr6_1:47787806-47787825 | None:intergenic | 45.0% |
| AAATCGGGCTGTTACAGGTT+AGG | - | chr6_1:47787815-47787834 | None:intergenic | 45.0% | |
| TCGAAAAATCGGGCTGTTAC+AGG | - | chr6_1:47787820-47787839 | None:intergenic | 45.0% | |
| ! | TTTGCCTCCGTGTGTAGTTT+TGG | + | chr6_1:47787893-47787912 | Msa0887020:intron | 45.0% |
| !! | TCGCAGAATTCGGTGTTAGA+AGG | + | chr6_1:47787923-47787942 | Msa0887020:intron | 45.0% |
| !! | CGCAGAATTCGGTGTTAGAA+GGG | + | chr6_1:47787924-47787943 | Msa0887020:intron | 45.0% |
| !! | GGGGCATTTTGGTCATTTTG+AGG | + | chr6_1:47787969-47787988 | Msa0887020:intron | 45.0% |
| !! | GAAATGGGTTAGGCCCATTA+AGG | + | chr6_1:47788159-47788178 | Msa0887020:intron | 45.0% |
| !! | GAAGCTAGGATTAGTTGAGG+AGG | - | chr6_1:47788280-47788299 | None:intergenic | 45.0% |
| !! | GTGGAAGCTAGGATTAGTTG+AGG | - | chr6_1:47788283-47788302 | None:intergenic | 45.0% |
| AACAGCTTCCAAAGGAAGCT+AGG | - | chr6_1:47788364-47788383 | None:intergenic | 45.0% | |
| TTGGCACACAGACCAATTGT+TGG | - | chr6_1:47788572-47788591 | None:intergenic | 45.0% | |
| AACGCAACCAAAAAGGACAC+GGG | + | chr6_1:47788747-47788766 | Msa0887020:CDS | 45.0% | |
| ! | TGAGTTGTTGTTCCTCTTGG+TGG | + | chr6_1:47787200-47787219 | Msa0887020:CDS | 45.0% |
| ACACGGCTACTGAAGAAGTA+TGG | + | chr6_1:47787439-47787458 | Msa0887020:CDS | 45.0% | |
| !! | TTAGGTGATGGAGGTTGGTA+CGG | - | chr6_1:47787797-47787816 | None:intergenic | 45.0% |
| ! | TGTTACAGGTTAGGTGATGG+AGG | - | chr6_1:47787806-47787825 | None:intergenic | 45.0% |
| AAATCGGGCTGTTACAGGTT+AGG | - | chr6_1:47787815-47787834 | None:intergenic | 45.0% | |
| TCGAAAAATCGGGCTGTTAC+AGG | - | chr6_1:47787820-47787839 | None:intergenic | 45.0% | |
| ! | TTTGCCTCCGTGTGTAGTTT+TGG | + | chr6_1:47787893-47787912 | Msa0887020:intron | 45.0% |
| !! | TCGCAGAATTCGGTGTTAGA+AGG | + | chr6_1:47787923-47787942 | Msa0887020:intron | 45.0% |
| !! | CGCAGAATTCGGTGTTAGAA+GGG | + | chr6_1:47787924-47787943 | Msa0887020:intron | 45.0% |
| !! | GGGGCATTTTGGTCATTTTG+AGG | + | chr6_1:47787969-47787988 | Msa0887020:intron | 45.0% |
| !! | GAAATGGGTTAGGCCCATTA+AGG | + | chr6_1:47788159-47788178 | Msa0887020:intron | 45.0% |
| !! | GAAGCTAGGATTAGTTGAGG+AGG | - | chr6_1:47788280-47788299 | None:intergenic | 45.0% |
| !! | GTGGAAGCTAGGATTAGTTG+AGG | - | chr6_1:47788283-47788302 | None:intergenic | 45.0% |
| AACAGCTTCCAAAGGAAGCT+AGG | - | chr6_1:47788364-47788383 | None:intergenic | 45.0% | |
| TTGGCACACAGACCAATTGT+TGG | - | chr6_1:47788572-47788591 | None:intergenic | 45.0% | |
| AACGCAACCAAAAAGGACAC+GGG | + | chr6_1:47788747-47788766 | Msa0887020:CDS | 45.0% | |
| GGGAAGGGTAAGGACAAAGA+TGG | + | chr6_1:47787147-47787166 | Msa0887020:CDS | 50.0% | |
| !! | ACAGGTTAGGTGATGGAGGT+TGG | - | chr6_1:47787802-47787821 | None:intergenic | 50.0% |
| GGCTGTTACAGGTTAGGTGA+TGG | - | chr6_1:47787809-47787828 | None:intergenic | 50.0% | |
| CCAACCAAAACTACACACGG+AGG | - | chr6_1:47787900-47787919 | None:intergenic | 50.0% | |
| !!! | CCTCCGTGTGTAGTTTTGGT+TGG | + | chr6_1:47787897-47787916 | Msa0887020:intron | 50.0% |
| ! | TGCTTGACACACACTAGCCT+TGG | + | chr6_1:47788403-47788422 | Msa0887020:intron | 50.0% |
| GGGAAGGGTAAGGACAAAGA+TGG | + | chr6_1:47787147-47787166 | Msa0887020:CDS | 50.0% | |
| !! | ACAGGTTAGGTGATGGAGGT+TGG | - | chr6_1:47787802-47787821 | None:intergenic | 50.0% |
| GGCTGTTACAGGTTAGGTGA+TGG | - | chr6_1:47787809-47787828 | None:intergenic | 50.0% | |
| CCAACCAAAACTACACACGG+AGG | - | chr6_1:47787900-47787919 | None:intergenic | 50.0% | |
| !!! | CCTCCGTGTGTAGTTTTGGT+TGG | + | chr6_1:47787897-47787916 | Msa0887020:intron | 50.0% |
| ! | TGCTTGACACACACTAGCCT+TGG | + | chr6_1:47788403-47788422 | Msa0887020:intron | 50.0% |
| ! | GTTGGAGGTGGAGTGTCTAG+CGG | + | chr6_1:47787635-47787654 | Msa0887020:CDS | 55.0% |
| ! | TTGGAGGTGGAGTGTCTAGC+GGG | + | chr6_1:47787636-47787655 | Msa0887020:CDS | 55.0% |
| ! | GTTGGAGGTGGAGTGTCTAG+CGG | + | chr6_1:47787635-47787654 | Msa0887020:CDS | 55.0% |
| ! | TTGGAGGTGGAGTGTCTAGC+GGG | + | chr6_1:47787636-47787655 | Msa0887020:CDS | 55.0% |
| !! | GGTGATGGAGGTTGGTACGG+TGG | - | chr6_1:47787794-47787813 | None:intergenic | 60.0% |
| !! | GGTGATGGAGGTTGGTACGG+TGG | - | chr6_1:47787794-47787813 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 47787117 | 47788772 | 47787117 | ID=Msa0887020;Name=Msa0887020 |
| chr6_1 | mRNA | 47787117 | 47788772 | 47787117 | ID=Msa0887020-mRNA-1;Parent=Msa0887020;Name=Msa0887020-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|0.75|0.33|0.25|4|0|194 |
| chr6_1 | exon | 47787117 | 47787264 | 47787117 | ID=Msa0887020-mRNA-1:exon:10005;Parent=Msa0887020-mRNA-1 |
| chr6_1 | exon | 47787280 | 47787476 | 47787280 | ID=Msa0887020-mRNA-1:exon:10006;Parent=Msa0887020-mRNA-1 |
| chr6_1 | exon | 47787569 | 47787758 | 47787569 | ID=Msa0887020-mRNA-1:exon:10007;Parent=Msa0887020-mRNA-1 |
| chr6_1 | exon | 47788723 | 47788772 | 47788723 | ID=Msa0887020-mRNA-1:exon:10008;Parent=Msa0887020-mRNA-1 |
| chr6_1 | CDS | 47787117 | 47787264 | 47787117 | ID=Msa0887020-mRNA-1:cds;Parent=Msa0887020-mRNA-1 |
| chr6_1 | CDS | 47787280 | 47787476 | 47787280 | ID=Msa0887020-mRNA-1:cds;Parent=Msa0887020-mRNA-1 |
| chr6_1 | CDS | 47787569 | 47787758 | 47787569 | ID=Msa0887020-mRNA-1:cds;Parent=Msa0887020-mRNA-1 |
| chr6_1 | CDS | 47788723 | 47788772 | 47788723 | ID=Msa0887020-mRNA-1:cds;Parent=Msa0887020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
