Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649050 | AES89723.2 | 90.196 | 306 | 7 | 3 | 1 | 306 | 1 | 283 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649050 | sp|Q9UTE6|MAK16_SCHPO | 57.812 | 192 | 79 | 1 | 1 | 192 | 1 | 190 | 1.06e-72 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003720 | Msa0649050 | 0.809917 | 1.492869e-50 | -8.615850e-47 |
| Msa0003780 | Msa0649050 | 0.826146 | 3.184348e-54 | -8.615850e-47 |
| Msa0011960 | Msa0649050 | 0.805293 | 1.431604e-49 | -8.615850e-47 |
| Msa0030200 | Msa0649050 | 0.804046 | 2.607113e-49 | -8.615850e-47 |
| Msa0032090 | Msa0649050 | 0.854405 | 1.258467e-61 | -8.615850e-47 |
| Msa0032430 | Msa0649050 | 0.864430 | 1.223357e-64 | -8.615850e-47 |
| Msa0032580 | Msa0649050 | 0.803532 | 3.332850e-49 | -8.615850e-47 |
| Msa0033110 | Msa0649050 | 0.832737 | 7.969175e-56 | -8.615850e-47 |
| Msa0033260 | Msa0649050 | 0.834783 | 2.454201e-56 | -8.615850e-47 |
| Msa0040690 | Msa0649050 | 0.826851 | 2.162240e-54 | -8.615850e-47 |
| Msa0043660 | Msa0649050 | 0.800505 | 1.396854e-48 | -8.615850e-47 |
| Msa0047160 | Msa0649050 | 0.826246 | 3.013589e-54 | -8.615850e-47 |
| Msa0049370 | Msa0649050 | 0.803071 | 4.152227e-49 | -8.615850e-47 |
| Msa0054440 | Msa0649050 | 0.804601 | 1.997708e-49 | -8.615850e-47 |
| Msa0054480 | Msa0649050 | 0.825585 | 4.325257e-54 | -8.615850e-47 |
| Msa0059040 | Msa0649050 | 0.801023 | 1.094606e-48 | -8.615850e-47 |
| Msa0059110 | Msa0649050 | 0.821898 | 3.161058e-53 | -8.615850e-47 |
| Msa0070700 | Msa0649050 | 0.834858 | 2.350562e-56 | -8.615850e-47 |
| Msa0072420 | Msa0649050 | 0.802770 | 4.791304e-49 | -8.615850e-47 |
| Msa0079380 | Msa0649050 | 0.854007 | 1.638970e-61 | -8.615850e-47 |
| Msa0086750 | Msa0649050 | 0.821140 | 4.729614e-53 | -8.615850e-47 |
| Msa0090360 | Msa0649050 | 0.801751 | 7.765321e-49 | -8.615850e-47 |
| Msa0090520 | Msa0649050 | 0.802803 | 4.717729e-49 | -8.615850e-47 |
| Msa0091410 | Msa0649050 | 0.836619 | 8.415443e-57 | -8.615850e-47 |
| Msa0094470 | Msa0649050 | 0.846849 | 1.676718e-59 | -8.615850e-47 |
| Msa0105370 | Msa0649050 | 0.804916 | 1.716903e-49 | -8.615850e-47 |
| Msa0115400 | Msa0649050 | 0.821120 | 4.780540e-53 | -8.615850e-47 |
| Msa0118590 | Msa0649050 | 0.831697 | 1.441238e-55 | -8.615850e-47 |
| Msa0608500 | Msa0649050 | 0.937900 | 1.630107e-98 | -8.615850e-47 |
| Msa0615440 | Msa0649050 | 0.810281 | 1.245993e-50 | -8.615850e-47 |
| Msa0615710 | Msa0649050 | 0.802640 | 5.098013e-49 | -8.615850e-47 |
| Msa0623790 | Msa0649050 | 0.800481 | 1.412748e-48 | -8.615850e-47 |
| Msa0625720 | Msa0649050 | 0.827702 | 1.351709e-54 | -8.615850e-47 |
| Msa0626630 | Msa0649050 | 0.826365 | 2.824376e-54 | -8.615850e-47 |
| Msa0643560 | Msa0649050 | 0.807630 | 4.601513e-50 | -8.615850e-47 |
| Msa0649020 | Msa0649050 | 0.977517 | 6.122711e-144 | -8.615850e-47 |
| Msa0649050 | Msa0663390 | 0.836160 | 1.100890e-56 | -8.615850e-47 |
| Msa0649050 | Msa0664750 | 0.817512 | 3.173950e-52 | -8.615850e-47 |
| Msa0649050 | Msa0689260 | 0.849755 | 2.638450e-60 | -8.615850e-47 |
| Msa0649050 | Msa0691530 | 0.958668 | 1.333399e-116 | -8.615850e-47 |
| Msa0649050 | Msa0698490 | 0.817261 | 3.615145e-52 | -8.615850e-47 |
| Msa0649050 | Msa0698660 | 0.809902 | 1.504302e-50 | -8.615850e-47 |
| Msa0649050 | Msa0698800 | 0.802419 | 5.660466e-49 | -8.615850e-47 |
| Msa0649050 | Msa0707250 | 0.829639 | 4.600607e-55 | -8.615850e-47 |
| Msa0649050 | Msa0711780 | 0.819453 | 1.152095e-52 | -8.615850e-47 |
| Msa0649050 | Msa0715700 | 0.806621 | 7.526021e-50 | -8.615850e-47 |
| Msa0649050 | Msa0757830 | 0.815929 | 7.186522e-52 | -8.615850e-47 |
| Msa0649050 | Msa0765080 | 0.800202 | 1.609671e-48 | -8.615850e-47 |
| Msa0649050 | Msa0788850 | 0.829339 | 5.441682e-55 | -8.615850e-47 |
| Msa0649050 | Msa0793800 | 0.800042 | 1.734867e-48 | -8.615850e-47 |
| Msa0649050 | Msa0794670 | 0.819659 | 1.033966e-52 | -8.615850e-47 |
| Msa0649050 | Msa0876810 | 0.831748 | 1.400373e-55 | -8.615850e-47 |
| Msa0649050 | Msa0891710 | 0.810134 | 1.340388e-50 | -8.615850e-47 |
| Msa0649050 | Msa0902760 | 0.824242 | 8.977187e-54 | -8.615850e-47 |
| Msa0649050 | Msa0989540 | 0.823273 | 1.513660e-53 | -8.615850e-47 |
| Msa0649050 | Msa1006840 | 0.849879 | 2.435899e-60 | -8.615850e-47 |
| Msa0649050 | Msa1013400 | 0.819715 | 1.003827e-52 | -8.615850e-47 |
| Msa0649050 | Msa1021520 | 0.801458 | 8.918928e-49 | -8.615850e-47 |
| Msa0649050 | Msa1043690 | 0.810894 | 9.186603e-51 | -8.615850e-47 |
| Msa0649050 | Msa1081930 | 0.822556 | 2.223510e-53 | -8.615850e-47 |
| Msa0649050 | Msa1081980 | 0.831347 | 1.757286e-55 | -8.615850e-47 |
| Msa0649050 | Msa1093530 | 0.825170 | 5.423853e-54 | -8.615850e-47 |
| Msa0649050 | Msa1104140 | 0.833990 | 3.882352e-56 | -8.615850e-47 |
| Msa0649050 | Msa1106700 | 0.820846 | 5.527160e-53 | -8.615850e-47 |
| Msa0649050 | Msa1121440 | 0.816499 | 5.358504e-52 | -8.615850e-47 |
| Msa0649050 | Msa1135890 | 0.810042 | 1.403407e-50 | -8.615850e-47 |
| Msa0649050 | Msa1148910 | 0.823199 | 1.575045e-53 | -8.615850e-47 |
| Msa0649050 | Msa1160590 | 0.815437 | 9.250737e-52 | -8.615850e-47 |
| Msa0649050 | Msa1165940 | 0.808986 | 2.364775e-50 | -8.615850e-47 |
| Msa0649050 | Msa1170670 | 0.809355 | 1.971341e-50 | -8.615850e-47 |
| Msa0649050 | Msa1181250 | 0.828590 | 8.263579e-55 | -8.615850e-47 |
| Msa0649050 | Msa1181330 | 0.818793 | 1.628557e-52 | -8.615850e-47 |
| Msa0649050 | Msa1181910 | 0.837936 | 3.872404e-57 | -8.615850e-47 |
| Msa0649050 | Msa1208880 | 0.820140 | 8.028569e-53 | -8.615850e-47 |
| Msa0649050 | Msa1209200 | 0.856935 | 2.298017e-62 | -8.615850e-47 |
| Msa0649050 | Msa1213480 | 0.807343 | 5.295381e-50 | -8.615850e-47 |
| Msa0649050 | Msa1245930 | 0.819266 | 1.271117e-52 | -8.615850e-47 |
| Msa0649050 | Msa1254730 | 0.820205 | 7.758585e-53 | -8.615850e-47 |
| Msa0649050 | Msa1259060 | 0.816805 | 4.577065e-52 | -8.615850e-47 |
| Msa0649050 | Msa1265630 | 0.830395 | 3.009267e-55 | -8.615850e-47 |
| Msa0649050 | Msa1294820 | 0.820810 | 5.634092e-53 | -8.615850e-47 |
| Msa0649050 | Msa1300380 | 0.806478 | 8.065774e-50 | -8.615850e-47 |
| Msa0649050 | Msa1330410 | 0.802732 | 4.878424e-49 | -8.615850e-47 |
| Msa0649050 | Msa1332590 | 0.835370 | 1.746157e-56 | -8.615850e-47 |
| Msa0649050 | Msa1358250 | 0.848621 | 5.454142e-60 | -8.615850e-47 |
| Msa0649050 | Msa1374120 | 0.836835 | 7.414276e-57 | -8.615850e-47 |
| Msa0649050 | Msa1382560 | 0.815006 | 1.153204e-51 | -8.615850e-47 |
| Msa0649050 | Msa1382620 | 0.821368 | 4.189549e-53 | -8.615850e-47 |
| Msa0649050 | Msa1392780 | 0.841099 | 5.835966e-58 | -8.615850e-47 |
| Msa0649050 | Msa1393570 | 0.828184 | 1.035327e-54 | -8.615850e-47 |
| Msa0649050 | Msa1394290 | 0.864481 | 1.178880e-64 | -8.615850e-47 |
| Msa0649050 | Msa1400580 | 0.822419 | 2.393211e-53 | -8.615850e-47 |
| Msa0649050 | Msa1405930 | 0.808382 | 3.183458e-50 | -8.615850e-47 |
| Msa0649050 | Msa1419870 | 0.809325 | 2.000435e-50 | -8.615850e-47 |
| Msa0649050 | Msa1432700 | 0.816959 | 4.226727e-52 | -8.615850e-47 |
| Msa0649050 | Msa1439550 | 0.801425 | 9.058019e-49 | -8.615850e-47 |
| Msa0649050 | Msa1440930 | 0.807905 | 4.022449e-50 | -8.615850e-47 |
| Msa0649050 | Msa1457920 | 0.852340 | 4.921428e-61 | -8.615850e-47 |
| Msa0127020 | Msa0649050 | 0.801988 | 6.944275e-49 | -8.615850e-47 |
| Msa0137550 | Msa0649050 | 0.821801 | 3.329062e-53 | -8.615850e-47 |
| Msa0137990 | Msa0649050 | 0.804261 | 2.351368e-49 | -8.615850e-47 |
| Msa0140820 | Msa0649050 | 0.807296 | 5.417119e-50 | -8.615850e-47 |
| Msa0144370 | Msa0649050 | 0.840501 | 8.370225e-58 | -8.615850e-47 |
| Msa0150300 | Msa0649050 | 0.827731 | 1.330184e-54 | -8.615850e-47 |
| Msa0159170 | Msa0649050 | 0.806121 | 9.594071e-50 | -8.615850e-47 |
| Msa0165660 | Msa0649050 | 0.807784 | 4.267056e-50 | -8.615850e-47 |
| Msa0169280 | Msa0649050 | 0.801310 | 9.563061e-49 | -8.615850e-47 |
| Msa0169310 | Msa0649050 | 0.807000 | 6.259992e-50 | -8.615850e-47 |
| Msa0172070 | Msa0649050 | 0.863192 | 2.965808e-64 | -8.615850e-47 |
| Msa0183900 | Msa0649050 | 0.800228 | 1.590005e-48 | -8.615850e-47 |
| Msa0184040 | Msa0649050 | 0.800716 | 1.264717e-48 | -8.615850e-47 |
| Msa0189300 | Msa0649050 | 0.828650 | 7.988856e-55 | -8.615850e-47 |
| Msa0220720 | Msa0649050 | 0.840734 | 7.273813e-58 | -8.615850e-47 |
| Msa0232010 | Msa0649050 | 0.805365 | 1.382925e-49 | -8.615850e-47 |
| Msa0232080 | Msa0649050 | 0.809064 | 2.276029e-50 | -8.615850e-47 |
| Msa0366890 | Msa0649050 | 0.801507 | 8.716834e-49 | -8.615850e-47 |
| Msa0385580 | Msa0649050 | 0.820265 | 7.515396e-53 | -8.615850e-47 |
| Msa0388700 | Msa0649050 | 0.817172 | 3.783935e-52 | -8.615850e-47 |
| Msa0395820 | Msa0649050 | 0.839970 | 1.152238e-57 | -8.615850e-47 |
| Msa0402650 | Msa0649050 | 0.820704 | 5.958460e-53 | -8.615850e-47 |
| Msa0411430 | Msa0649050 | 0.808534 | 2.953890e-50 | -8.615850e-47 |
| Msa0449210 | Msa0649050 | 0.810517 | 1.108131e-50 | -8.615850e-47 |
| Msa0467380 | Msa0649050 | 0.803556 | 3.295487e-49 | -8.615850e-47 |
| Msa0472550 | Msa0649050 | 0.804561 | 2.035836e-49 | -8.615850e-47 |
| Msa0472620 | Msa0649050 | 0.802205 | 6.265381e-49 | -8.615850e-47 |
| Msa0481530 | Msa0649050 | 0.833178 | 6.191340e-56 | -8.615850e-47 |
| Msa0482130 | Msa0649050 | 0.806344 | 8.611075e-50 | -8.615850e-47 |
| Msa0258390 | Msa0649050 | 0.843770 | 1.142261e-58 | -8.615850e-47 |
| Msa0279240 | Msa0649050 | 0.829326 | 5.479924e-55 | -8.615850e-47 |
| Msa0297610 | Msa0649050 | 0.816777 | 4.641645e-52 | -8.615850e-47 |
| Msa0299870 | Msa0649050 | 0.836214 | 1.067056e-56 | -8.615850e-47 |
| Msa0309750 | Msa0649050 | 0.818640 | 1.764130e-52 | -8.615850e-47 |
| Msa0318980 | Msa0649050 | 0.823320 | 1.475785e-53 | -8.615850e-47 |
| Msa0326480 | Msa0649050 | 0.800131 | 1.664316e-48 | -8.615850e-47 |
| Msa0335730 | Msa0649050 | 0.863964 | 1.708432e-64 | -8.615850e-47 |
| Msa0337240 | Msa0649050 | 0.809149 | 2.182273e-50 | -8.615850e-47 |
| Msa0340380 | Msa0649050 | 0.809850 | 1.542918e-50 | -8.615850e-47 |
| Msa0357900 | Msa0649050 | 0.840592 | 7.922372e-58 | -8.615850e-47 |
| Msa0493410 | Msa0649050 | 0.803910 | 2.782645e-49 | -8.615850e-47 |
| Msa0497210 | Msa0649050 | 0.828945 | 6.780418e-55 | -8.615850e-47 |
| Msa0497490 | Msa0649050 | 0.802120 | 6.524102e-49 | -8.615850e-47 |
| Msa0523120 | Msa0649050 | 0.822719 | 2.037704e-53 | -8.615850e-47 |
| Msa0529890 | Msa0649050 | 0.827920 | 1.198298e-54 | -8.615850e-47 |
| Msa0542130 | Msa0649050 | 0.800775 | 1.230330e-48 | -8.615850e-47 |
| Msa0548240 | Msa0649050 | 0.812311 | 4.518552e-51 | -8.615850e-47 |
| Msa0554920 | Msa0649050 | 0.968852 | 2.859767e-129 | -8.615850e-47 |
| Msa0556060 | Msa0649050 | 0.806045 | 9.954307e-50 | -8.615850e-47 |
| Msa0572840 | Msa0649050 | 0.811921 | 5.496228e-51 | -8.615850e-47 |
| Msa0581280 | Msa0649050 | 0.843879 | 1.068212e-58 | -8.615850e-47 |
| Msa0585560 | Msa0649050 | 0.833479 | 5.209420e-56 | -8.615850e-47 |
| Msa0588360 | Msa0649050 | 0.827021 | 1.968743e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649050 | MtrunA17_Chr2g0332911 | 71.343 | 335 | 63 | 2 | 1 | 305 | 1 | 332 | 2.22e-156 | 440 |
| Msa0649050 | MtrunA17_Chr4g0040641 | 92.188 | 192 | 12 | 2 | 115 | 306 | 1 | 189 | 9.74e-103 | 298 |
| Msa0649050 | MtrunA17_Chr4g0040651 | 100.000 | 110 | 0 | 0 | 1 | 110 | 1 | 110 | 1.19e-83 | 247 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649050 | AT1G23280.1 | 74.611 | 193 | 47 | 1 | 1 | 193 | 1 | 191 | 1.38e-105 | 310 |
Find 61 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAACGACTAATCAAAATT+TGG | 0.234048 | 4_3:+55638678 | None:intergenic |
| GAAGATGATATAGAAGATTT+TGG | 0.237046 | 4_3:-55641243 | Msa0649050:CDS |
| AAACGACGTTTGCTTCATTC+AGG | 0.288021 | 4_3:+55643410 | None:intergenic |
| GACTTTAGCTTCAAAGAAAC+TGG | 0.316024 | 4_3:-55640028 | Msa0649050:CDS |
| TATCCGCATCTGAGTCATTT+TGG | 0.319490 | 4_3:+55641966 | None:intergenic |
| CAAATTCCGGTGACATTGTA+AGG | 0.322485 | 4_3:+55643197 | None:intergenic |
| AGGTTATATGGCAAGTTATC+AGG | 0.341917 | 4_3:-55643274 | Msa0649050:CDS |
| TGAACTTCGGTTACAAATTC+CGG | 0.346804 | 4_3:+55643184 | None:intergenic |
| GTCTATTGAGAAAGAGCTAT+TGG | 0.348403 | 4_3:-55641554 | Msa0649050:CDS |
| TTAATCAAAGGAAAGCAAAA+AGG | 0.387263 | 4_3:-55640056 | Msa0649050:CDS |
| TGCAGCACGATGAGGTTATA+TGG | 0.401960 | 4_3:-55643286 | Msa0649050:CDS |
| ATCTTGTGTATAAGAAGCTT+GGG | 0.406860 | 4_3:+55642003 | None:intergenic |
| TACTGCACTGACAGATGTAT+TGG | 0.411812 | 4_3:-55642026 | Msa0649050:intron |
| ACTCTTTCCCACAAATCCTT+TGG | 0.416287 | 4_3:+55642191 | None:intergenic |
| AATGGCAGCGATGATGAAAA+TGG | 0.418107 | 4_3:-55641192 | Msa0649050:intron |
| AAAGGGAATGGTTTCGATGC+AGG | 0.431671 | 4_3:+55643363 | None:intergenic |
| TATCTTGTGTATAAGAAGCT+TGG | 0.432339 | 4_3:+55642002 | None:intergenic |
| TGCATATATCACCTCCTGTC+TGG | 0.447878 | 4_3:+55641509 | None:intergenic |
| TGTTGAAGAAGAGGATGAAA+TGG | 0.458882 | 4_3:-55641431 | Msa0649050:intron |
| CTCATACGCCAAAGGATTTG+TGG | 0.458884 | 4_3:-55642199 | Msa0649050:CDS |
| ATTGAAGAGGAAACAGAAAC+AGG | 0.469123 | 4_3:-55641291 | Msa0649050:CDS |
| AGCTTCAAAGAAACTGGAAA+AGG | 0.487427 | 4_3:-55640022 | Msa0649050:CDS |
| ATCTCAAGCTGTTGAAGAAG+AGG | 0.492311 | 4_3:-55641440 | Msa0649050:CDS |
| AACGACACTGCCAAGAAAAG+AGG | 0.508652 | 4_3:-55641716 | Msa0649050:CDS |
| GCACAACCATTGCAGTTACA+TGG | 0.509010 | 4_3:-55643252 | Msa0649050:CDS |
| TGAAGTCATTGACAAACATC+TGG | 0.510638 | 4_3:-55642138 | Msa0649050:intron |
| CATAGCGACTATTAGCTAAA+GGG | 0.510834 | 4_3:+55643159 | None:intergenic |
| AAAAGCAGCTGTGCTAGAAA+AGG | 0.513340 | 4_3:-55641659 | Msa0649050:intron |
| ATTCACGAGTCACAGGGAAA+TGG | 0.513739 | 4_3:-55641210 | Msa0649050:CDS |
| GCATAGCGACTATTAGCTAA+AGG | 0.516741 | 4_3:+55643158 | None:intergenic |
| CTCAGATGCGGATACGTATG+AGG | 0.518871 | 4_3:-55641957 | Msa0649050:CDS |
| AGAATATGTTGAATTTGAAG+AGG | 0.522267 | 4_3:-55641265 | Msa0649050:CDS |
| AAGGGAATGGTTTCGATGCA+GGG | 0.522545 | 4_3:+55643364 | None:intergenic |
| CAATGACTTCAAGTGCCTGC+TGG | 0.525481 | 4_3:+55642150 | None:intergenic |
| TCATACGCCAAAGGATTTGT+GGG | 0.528939 | 4_3:-55642198 | Msa0649050:CDS |
| AGTGCCTGCTGGTAATTCCT+AGG | 0.529178 | 4_3:+55642161 | None:intergenic |
| TTTCTTTGATTTAGAATCAG+AGG | 0.543640 | 4_3:+55639996 | None:intergenic |
| GGGAAAGAGTTAAGCTGCCT+AGG | 0.548712 | 4_3:-55642178 | Msa0649050:CDS |
| GGAAACTTTCTTTGAAAACA+AGG | 0.556860 | 4_3:-55641936 | Msa0649050:intron |
| TAGCTAAAGGGCATGAACTT+CGG | 0.561734 | 4_3:+55643171 | None:intergenic |
| ACCATTGTCTTCACGAATGG+TGG | 0.572329 | 4_3:+55643136 | None:intergenic |
| CAAAACGGACTTTACCAGAC+AGG | 0.572560 | 4_3:-55641523 | Msa0649050:CDS |
| GTTTGAAAGGAAGCCAGTGT+TGG | 0.577184 | 4_3:-55638571 | Msa0649050:three_prime_UTR |
| AAACTGAAGCACTTAATCAA+AGG | 0.580098 | 4_3:-55640068 | Msa0649050:CDS |
| AGTACCATTGTCTTCACGAA+TGG | 0.580983 | 4_3:+55643133 | None:intergenic |
| AAATTCCGGTGACATTGTAA+GGG | 0.585183 | 4_3:+55643198 | None:intergenic |
| CTATTGGTACGCCTTCAAAA+CGG | 0.597593 | 4_3:-55641538 | Msa0649050:CDS |
| AGAAACCCTTACAATGTCAC+CGG | 0.609253 | 4_3:-55643203 | Msa0649050:CDS |
| GAAAGCGAAGGTCCTCATTG+AGG | 0.612298 | 4_3:-55639977 | Msa0649050:intron |
| TTCTAAATCAAAGAAAGCGA+AGG | 0.616150 | 4_3:-55639989 | Msa0649050:CDS |
| AACACGACGATGCTGTCGAA+AGG | 0.621867 | 4_3:-55638770 | Msa0649050:CDS |
| TTTGCAATTCACGAGTCACA+GGG | 0.623320 | 4_3:-55641216 | Msa0649050:CDS |
| GCTGCCTAGGAATTACCAGC+AGG | 0.624895 | 4_3:-55642165 | Msa0649050:CDS |
| CACAAAGATGCAGCACGATG+AGG | 0.628152 | 4_3:-55643294 | Msa0649050:exon |
| TGAAAGAGCTCATACGCCAA+AGG | 0.633610 | 4_3:-55642207 | Msa0649050:CDS |
| AGTATAAAATTACCTCAATG+AGG | 0.639733 | 4_3:+55639965 | None:intergenic |
| TACATGGCCAAAATTACCAC+CGG | 0.640975 | 4_3:-55643236 | Msa0649050:CDS |
| GCCACCATTCGTGAAGACAA+TGG | 0.656349 | 4_3:-55643137 | Msa0649050:intron |
| TGCTGTCGAAAGGCAAAGAG+CGG | 0.666319 | 4_3:-55638760 | Msa0649050:CDS |
| AACGGACTTTACCAGACAGG+AGG | 0.681084 | 4_3:-55641520 | Msa0649050:CDS |
| TGACCAAAATGACTCAGATG+CGG | 0.687329 | 4_3:-55641969 | Msa0649050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATAAATTAATTTGAAAATA+GGG | + | chr4_3:55642703-55642722 | None:intergenic | 10.0% |
| !!! | ACATAAATTAATTTGAAAAT+AGG | + | chr4_3:55642704-55642723 | None:intergenic | 10.0% |
| !!! | AAAAATTCTAATTTTTTTTC+AGG | + | chr4_3:55642777-55642796 | None:intergenic | 10.0% |
| !!! | TATAATATTTTGAATTTTTC+TGG | - | chr4_3:55642903-55642922 | Msa0649050:intron | 10.0% |
| !!! | AAATGTCATTTTAATCAAAT+GGG | + | chr4_3:55638952-55638971 | None:intergenic | 15.0% |
| !!! | TAAATGTCATTTTAATCAAA+TGG | + | chr4_3:55638953-55638972 | None:intergenic | 15.0% |
| !! | ATTTGATTAAAATGACATTT+AGG | - | chr4_3:55638952-55638971 | Msa0649050:intron | 15.0% |
| !!! | AATAATAAGTTGATAGTTTA+TGG | - | chr4_3:55639625-55639644 | Msa0649050:intron | 15.0% |
| !! | ATACAAAAAAGTTATTGATA+TGG | - | chr4_3:55640455-55640474 | Msa0649050:intron | 15.0% |
| !!! | TGCTAAAATATATTTGAAAT+AGG | - | chr4_3:55640814-55640833 | Msa0649050:intron | 15.0% |
| !!! | AATATATTTGAAATAGGTTA+TGG | - | chr4_3:55640820-55640839 | Msa0649050:intron | 15.0% |
| !!! | ATAATGGAAGATAATAAAAT+GGG | + | chr4_3:55641676-55641695 | None:intergenic | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | + | chr4_3:55642672-55642691 | None:intergenic | 15.0% |
| !!! | TGAAGATTGAAAATTTTATA+GGG | - | chr4_3:55642987-55643006 | Msa0649050:intron | 15.0% |
| !! | AAAAAGTTGACATATTTATA+GGG | - | chr4_3:55643047-55643066 | Msa0649050:intron | 15.0% |
| !!! | ATCTTTGTGATCAAATTTTA+AGG | + | chr4_3:55638620-55638639 | None:intergenic | 20.0% |
| !! | ATATAGTTATGAAATTCTTG+TGG | - | chr4_3:55638866-55638885 | Msa0649050:intron | 20.0% |
| !!! | TATTACATTTTCCATTCAAA+AGG | + | chr4_3:55639606-55639625 | None:intergenic | 20.0% |
| !! | TTATTGTTAAAAAGAAGCAA+AGG | + | chr4_3:55640031-55640050 | None:intergenic | 20.0% |
| !!! | TCCTTTATCTACTATATTTT+AGG | - | chr4_3:55640096-55640115 | Msa0649050:intron | 20.0% |
| !! | AAATTCTTAGTAACTTAACT+TGG | - | chr4_3:55640572-55640591 | Msa0649050:intron | 20.0% |
| !! | AAAGATAAAAGAAATATACC+AGG | + | chr4_3:55640610-55640629 | None:intergenic | 20.0% |
| !! | AACTAAAATACAAAAGATTC+TGG | - | chr4_3:55640899-55640918 | Msa0649050:intron | 20.0% |
| !! | TAAAATAATCATCCATAGTA+TGG | + | chr4_3:55641218-55641237 | None:intergenic | 20.0% |
| !!! | TATTTTATCTTTTCCTTGTT+TGG | - | chr4_3:55641231-55641250 | Msa0649050:CDS | 20.0% |
| !! | GTAAATAGATGAGTAAAAAA+TGG | + | chr4_3:55641440-55641459 | None:intergenic | 20.0% |
| !! | CTTGATAAATAAGAATCAAA+AGG | + | chr4_3:55641484-55641503 | None:intergenic | 20.0% |
| !!! | CTTTTGATTCTTATTTATCA+AGG | - | chr4_3:55641482-55641501 | Msa0649050:CDS | 20.0% |
| !!! | GTGAATTTTGTCTATTTTTT+GGG | + | chr4_3:55641612-55641631 | None:intergenic | 20.0% |
| !!! | AGTGAATTTTGTCTATTTTT+TGG | + | chr4_3:55641613-55641632 | None:intergenic | 20.0% |
| !!! | GATAATGGAAGATAATAAAA+TGG | + | chr4_3:55641677-55641696 | None:intergenic | 20.0% |
| !! | ATTAAAAAGCAATAACATGA+TGG | - | chr4_3:55641798-55641817 | Msa0649050:intron | 20.0% |
| !! | AACATTCTGTTATAATTTGA+AGG | - | chr4_3:55642127-55642146 | Msa0649050:intron | 20.0% |
| !!! | AAAACATATTTAACCCTTTT+AGG | + | chr4_3:55642585-55642604 | None:intergenic | 20.0% |
| !!! | AAAAGGGTTAAATATGTTTT+TGG | - | chr4_3:55642585-55642604 | Msa0649050:intron | 20.0% |
| !! | AAAACGTTGACATATTTATA+GGG | + | chr4_3:55642612-55642631 | None:intergenic | 20.0% |
| !!! | TAAAATTTTCCTTCAACTTT+TGG | - | chr4_3:55642645-55642664 | Msa0649050:intron | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | + | chr4_3:55642673-55642692 | None:intergenic | 20.0% |
| !!! | AAATTTTCAATCACTACTTT+TGG | - | chr4_3:55642676-55642695 | Msa0649050:intron | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | - | chr4_3:55642955-55642974 | Msa0649050:intron | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | - | chr4_3:55642956-55642975 | Msa0649050:intron | 20.0% |
| !!! | AAATTTTCAATCTTCACTTT+TGG | + | chr4_3:55642983-55643002 | None:intergenic | 20.0% |
| !!! | GTGAAGATTGAAAATTTTAT+AGG | - | chr4_3:55642986-55643005 | Msa0649050:intron | 20.0% |
| !! | CAAAAAGTTGACATATTTAT+AGG | - | chr4_3:55643046-55643065 | Msa0649050:intron | 20.0% |
| !!! | TTTAGAACTTACGAAATTTT+AGG | + | chr4_3:55643096-55643115 | None:intergenic | 20.0% |
| !!! | TTTTGATTTTCATTGTTTTC+AGG | - | chr4_3:55643129-55643148 | Msa0649050:intron | 20.0% |
| !!! | TTATTTTGCTTTTGTTTGAA+AGG | - | chr4_3:55643341-55643360 | Msa0649050:five_prime_UTR | 20.0% |
| !!! | AATATGAGTTTTGTTTTGTT+TGG | - | chr4_3:55643387-55643406 | Msa0649050:five_prime_UTR | 20.0% |
| ! | ACTTTGATATCTTAGACATT+TGG | - | chr4_3:55638990-55639009 | Msa0649050:intron | 25.0% |
| ! | CATGTCAATGATTATGATTA+AGG | - | chr4_3:55639056-55639075 | Msa0649050:intron | 25.0% |
| !!! | GCTGTTTTAATAAGTTATCT+TGG | - | chr4_3:55639225-55639244 | Msa0649050:intron | 25.0% |
| !! | GATGTTTTCATAAGTTATCT+TGG | - | chr4_3:55639266-55639285 | Msa0649050:intron | 25.0% |
| !! | TTTTCATAAGTTATCTTGGA+GGG | - | chr4_3:55639270-55639289 | Msa0649050:intron | 25.0% |
| ! | TGGGAGAACTTATAAAAAAA+GGG | + | chr4_3:55639504-55639523 | None:intergenic | 25.0% |
| ! | TTGGGAGAACTTATAAAAAA+AGG | + | chr4_3:55639505-55639524 | None:intergenic | 25.0% |
| !! | TTTCAATAGTTTTCATGTAG+AGG | + | chr4_3:55639703-55639722 | None:intergenic | 25.0% |
| ! | GCCTAAAATATAGTAGATAA+AGG | + | chr4_3:55640100-55640119 | None:intergenic | 25.0% |
| ! | ATAACATAATTTAGTACGCA+CGG | + | chr4_3:55640314-55640333 | None:intergenic | 25.0% |
| ! | AATATTCAAAAGAAACAGTG+AGG | + | chr4_3:55640346-55640365 | None:intergenic | 25.0% |
| ! | CAAAAAAGTTATTGATATGG+TGG | - | chr4_3:55640458-55640477 | Msa0649050:intron | 25.0% |
| !! | TTTATCTTTTCAGATTGAAG+AGG | - | chr4_3:55640621-55640640 | Msa0649050:intron | 25.0% |
| ! | AGAATATGTTGAATTTGAAG+AGG | - | chr4_3:55640660-55640679 | Msa0649050:intron | 25.0% |
| !! | GAAGATGATATAGAAGATTT+TGG | - | chr4_3:55640682-55640701 | Msa0649050:intron | 25.0% |
| ! | AAATATTTCTTCACTCATCA+AGG | - | chr4_3:55640855-55640874 | Msa0649050:intron | 25.0% |
| ! | ACAATGCAAATGATAGAAAA+TGG | - | chr4_3:55641177-55641196 | Msa0649050:intron | 25.0% |
| ! | CAATGCAAATGATAGAAAAT+GGG | - | chr4_3:55641178-55641197 | Msa0649050:intron | 25.0% |
| ! | GAAAATAGTTATCCATACTA+TGG | - | chr4_3:55641203-55641222 | Msa0649050:CDS | 25.0% |
| !!! | AATCTTCTTTTTTGCTTGTT+CGG | + | chr4_3:55641566-55641585 | None:intergenic | 25.0% |
| !! | ATTTTCCAAAATCACTAACA+AGG | + | chr4_3:55641761-55641780 | None:intergenic | 25.0% |
| ! | TTAATCAAAGGAAAGCAAAA+AGG | - | chr4_3:55641869-55641888 | Msa0649050:intron | 25.0% |
| !! | TTTCTTTGATTTAGAATCAG+AGG | + | chr4_3:55641932-55641951 | None:intergenic | 25.0% |
| ! | AGTATAAAATTACCTCAATG+AGG | + | chr4_3:55641963-55641982 | None:intergenic | 25.0% |
| ! | CACAATAGCATTTAAAAGAA+CGG | + | chr4_3:55642006-55642025 | None:intergenic | 25.0% |
| ! | GTGTGTTTGACATAATTATT+TGG | + | chr4_3:55642356-55642375 | None:intergenic | 25.0% |
| ! | CAAAACGTTGACATATTTAT+AGG | + | chr4_3:55642613-55642632 | None:intergenic | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | + | chr4_3:55643016-55643035 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr4_3:55643015-55643034 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | - | chr4_3:55643015-55643034 | Msa0649050:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | - | chr4_3:55643016-55643035 | Msa0649050:intron | 25.0% |
| !!! | AACTTACGAAATTTTAGGTA+GGG | + | chr4_3:55643091-55643110 | None:intergenic | 25.0% |
| ! | AAAATCAAAATTGTGATGTC+AGG | + | chr4_3:55643119-55643138 | None:intergenic | 25.0% |
| !! | ATTTTGTGTTAGTTACTGAT+AGG | - | chr4_3:55643200-55643219 | Msa0649050:CDS | 25.0% |
| ! | AGAAACGACTAATCAAAATT+TGG | + | chr4_3:55643250-55643269 | None:intergenic | 25.0% |
| !! | ATTTTTATATTTGCCAACAC+TGG | + | chr4_3:55643370-55643389 | None:intergenic | 25.0% |
| !!! | TTGAGGTTTTAGGGTTTAAA+GGG | + | chr4_3:55638582-55638601 | None:intergenic | 30.0% |
| !!! | TTTGAGGTTTTAGGGTTTAA+AGG | + | chr4_3:55638583-55638602 | None:intergenic | 30.0% |
| !!! | CTTTCAGTTTTGAGGTTTTA+GGG | + | chr4_3:55638591-55638610 | None:intergenic | 30.0% |
| !!! | ACTTTCAGTTTTGAGGTTTT+AGG | + | chr4_3:55638592-55638611 | None:intergenic | 30.0% |
| ! | GGATTTTACTTTCAGTTTTG+AGG | + | chr4_3:55638599-55638618 | None:intergenic | 30.0% |
| ! | AAAAATACCGGTGGTAATTT+TGG | + | chr4_3:55638699-55638718 | None:intergenic | 30.0% |
| AGGGTTTCTACAAAAAATAC+CGG | + | chr4_3:55638711-55638730 | None:intergenic | 30.0% | |
| ATTATGATTAAGGCTCTGTT+TGG | - | chr4_3:55639066-55639085 | Msa0649050:intron | 30.0% | |
| ATTGCAGCTTATATATCATG+AGG | - | chr4_3:55639124-55639143 | Msa0649050:intron | 30.0% | |
| AAGTTATCTTGGAGAGTTTA+TGG | - | chr4_3:55639236-55639255 | Msa0649050:intron | 30.0% | |
| ! | GTTTTCATAAGTTATCTTGG+AGG | - | chr4_3:55639269-55639288 | Msa0649050:intron | 30.0% |
| TACAATACACCCAAAATTGT+GGG | - | chr4_3:55639429-55639448 | Msa0649050:intron | 30.0% | |
| GGGAGAACTTATAAAAAAAG+GGG | + | chr4_3:55639503-55639522 | None:intergenic | 30.0% | |
| ! | TTGTATCGTATCCTTTTGAA+TGG | - | chr4_3:55639592-55639611 | Msa0649050:intron | 30.0% |
| ATCTTGTGTATAAGAAGCTT+GGG | + | chr4_3:55639925-55639944 | None:intergenic | 30.0% | |
| TATCTTGTGTATAAGAAGCT+TGG | + | chr4_3:55639926-55639945 | None:intergenic | 30.0% | |
| ! | GGAAACTTTCTTTGAAAACA+AGG | - | chr4_3:55639989-55640008 | Msa0649050:CDS | 30.0% |
| !!! | TTGGTTGTTGTTGTTTTACA+GGG | - | chr4_3:55640179-55640198 | Msa0649050:intron | 30.0% |
| TAACATAATTTAGTACGCAC+GGG | + | chr4_3:55640313-55640332 | None:intergenic | 30.0% | |
| TTGCAAAGCTTCTAAACTAA+AGG | + | chr4_3:55640762-55640781 | None:intergenic | 30.0% | |
| CTTTGAGCTGTAGTAAATAT+TGG | - | chr4_3:55641000-55641019 | Msa0649050:intron | 30.0% | |
| !! | TTATCTTTTCCTTGTTTGGT+TGG | - | chr4_3:55641235-55641254 | Msa0649050:CDS | 30.0% |
| !!! | TTTTTTTTCTCATGTCGTGA+TGG | - | chr4_3:55641309-55641328 | Msa0649050:intron | 30.0% |
| ATAAAATGGGCAGAAAGTAA+AGG | + | chr4_3:55641663-55641682 | None:intergenic | 30.0% | |
| CATTTGGATGCAAAAGATAA+TGG | + | chr4_3:55641692-55641711 | None:intergenic | 30.0% | |
| AGTGTTCTTCTCAAATGATA+AGG | + | chr4_3:55641736-55641755 | None:intergenic | 30.0% | |
| ! | AAACTGAAGCACTTAATCAA+AGG | - | chr4_3:55641857-55641876 | Msa0649050:intron | 30.0% |
| TTCTAAATCAAAGAAAGCGA+AGG | - | chr4_3:55641936-55641955 | Msa0649050:intron | 30.0% | |
| ! | ACACCTTTGTTGTAATATTG+CGG | - | chr4_3:55642372-55642391 | Msa0649050:intron | 30.0% |
| TAACCGCAATATTACAACAA+AGG | + | chr4_3:55642378-55642397 | None:intergenic | 30.0% | |
| AGATGTATGAGATACCTAAA+AGG | - | chr4_3:55642568-55642587 | Msa0649050:intron | 30.0% | |
| GATGTATGAGATACCTAAAA+GGG | - | chr4_3:55642569-55642588 | Msa0649050:intron | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | - | chr4_3:55643002-55643021 | Msa0649050:intron | 30.0% | |
| ! | GTAGGGTTAAATATGTCTTT+TGG | + | chr4_3:55643074-55643093 | None:intergenic | 30.0% |
| !! | GAACTTACGAAATTTTAGGT+AGG | + | chr4_3:55643092-55643111 | None:intergenic | 30.0% |
| !! | TGATTTTCATTGTTTTCAGG+TGG | - | chr4_3:55643132-55643151 | Msa0649050:intron | 30.0% |
| !!! | CTTCAAATTAGTTTTTACCC+TGG | - | chr4_3:55643268-55643287 | Msa0649050:CDS | 30.0% |
| !!! | GTTTTAGGGTTTAAAGGGAA+TGG | + | chr4_3:55638577-55638596 | None:intergenic | 35.0% |
| AGGTTATATGGCAAGTTATC+AGG | - | chr4_3:55638651-55638670 | Msa0649050:three_prime_UTR | 35.0% | |
| GTTTCTACAAAAAATACCGG+TGG | + | chr4_3:55638708-55638727 | None:intergenic | 35.0% | |
| AAATTCCGGTGACATTGTAA+GGG | + | chr4_3:55638730-55638749 | None:intergenic | 35.0% | |
| TGAACTTCGGTTACAAATTC+CGG | + | chr4_3:55638744-55638763 | None:intergenic | 35.0% | |
| CATAGCGACTATTAGCTAAA+GGG | + | chr4_3:55638769-55638788 | None:intergenic | 35.0% | |
| TATGAAATTCTTGTGGAGTG+TGG | - | chr4_3:55638873-55638892 | Msa0649050:intron | 35.0% | |
| GTGGAGAAAACTGCATTATT+TGG | - | chr4_3:55638892-55638911 | Msa0649050:intron | 35.0% | |
| !! | TAGACATTTGGTTCTTCATG+TGG | - | chr4_3:55639002-55639021 | Msa0649050:intron | 35.0% |
| !! | AGACATTTGGTTCTTCATGT+GGG | - | chr4_3:55639003-55639022 | Msa0649050:intron | 35.0% |
| ATGTGGGGTAGGTAATAATT+TGG | - | chr4_3:55639019-55639038 | Msa0649050:intron | 35.0% | |
| !!! | CTTACCCTGTTTTTTTACAC+AGG | + | chr4_3:55639403-55639422 | None:intergenic | 35.0% |
| GTACAATACACCCAAAATTG+TGG | - | chr4_3:55639428-55639447 | Msa0649050:intron | 35.0% | |
| ! | GATTATTTGAGTTTGTCTGC+TGG | + | chr4_3:55639549-55639568 | None:intergenic | 35.0% |
| ! | CATTTAGGGTCTGTTTAGAT+AGG | + | chr4_3:55639571-55639590 | None:intergenic | 35.0% |
| CTATCTAAACAGACCCTAAA+TGG | - | chr4_3:55639569-55639588 | Msa0649050:intron | 35.0% | |
| GGATACGATACAACCATTTA+GGG | + | chr4_3:55639585-55639604 | None:intergenic | 35.0% | |
| AGGATACGATACAACCATTT+AGG | + | chr4_3:55639586-55639605 | None:intergenic | 35.0% | |
| ACAATTGCATTGTGTGATGT+AGG | - | chr4_3:55639668-55639687 | Msa0649050:intron | 35.0% | |
| TGAAGTCATTGACAAACATC+TGG | - | chr4_3:55639787-55639806 | Msa0649050:intron | 35.0% | |
| ! | CTTTTATGGAGAAACTGCTA+TGG | + | chr4_3:55640142-55640161 | None:intergenic | 35.0% |
| TAGCAGTTTCTCCATAAAAG+TGG | - | chr4_3:55640142-55640161 | Msa0649050:intron | 35.0% | |
| AACAACCAACATGATCAATC+AGG | + | chr4_3:55640168-55640187 | None:intergenic | 35.0% | |
| !!! | GTTGGTTGTTGTTGTTTTAC+AGG | - | chr4_3:55640178-55640197 | Msa0649050:intron | 35.0% |
| ! | TCTCTCTTAACCTCTTTTCT+TGG | + | chr4_3:55640222-55640241 | None:intergenic | 35.0% |
| GTCTATTGAGAAAGAGCTAT+TGG | - | chr4_3:55640371-55640390 | Msa0649050:intron | 35.0% | |
| TGTTGAAGAAGAGGATGAAA+TGG | - | chr4_3:55640494-55640513 | Msa0649050:intron | 35.0% | |
| ATTGAAGAGGAAACAGAAAC+AGG | - | chr4_3:55640634-55640653 | Msa0649050:intron | 35.0% | |
| TAGAAGCTTTGCAATATGCA+TGG | - | chr4_3:55640768-55640787 | Msa0649050:intron | 35.0% | |
| ! | GATTCTGGATTAGATATGCA+TGG | - | chr4_3:55640914-55640933 | Msa0649050:intron | 35.0% |
| !! | TTTTCCTTGTTTGGTTGGTT+GGG | - | chr4_3:55641240-55641259 | Msa0649050:CDS | 35.0% |
| ! | AGGGAAATTTTGCTAATCAG+AGG | - | chr4_3:55641277-55641296 | Msa0649050:CDS | 35.0% |
| ATAAGAATCAAAAGGATCCC+AGG | + | chr4_3:55641476-55641495 | None:intergenic | 35.0% | |
| !!! | TTCTTTTTTGCTTGTTCGGT+TGG | + | chr4_3:55641562-55641581 | None:intergenic | 35.0% |
| ! | ACTCTCCTTGTTAGTGATTT+TGG | - | chr4_3:55641753-55641772 | Msa0649050:intron | 35.0% |
| ATGGCATTTACTAATGCAGA+TGG | - | chr4_3:55641817-55641836 | Msa0649050:intron | 35.0% | |
| ! | GACTTTAGCTTCAAAGAAAC+TGG | - | chr4_3:55641897-55641916 | Msa0649050:intron | 35.0% |
| AGCTTCAAAGAAACTGGAAA+AGG | - | chr4_3:55641903-55641922 | Msa0649050:intron | 35.0% | |
| ! | AACAACTCAACCACTTCTTT+TGG | - | chr4_3:55642065-55642084 | Msa0649050:intron | 35.0% |
| ! | ACAACTCAACCACTTCTTTT+GGG | - | chr4_3:55642066-55642085 | Msa0649050:intron | 35.0% |
| !! | ACCACTTCTTTTGGGAATTT+TGG | - | chr4_3:55642074-55642093 | Msa0649050:intron | 35.0% |
| ACCAAAATTCCCAAAAGAAG+TGG | + | chr4_3:55642078-55642097 | None:intergenic | 35.0% | |
| TAAATGATGCTGCTACAAAC+TGG | - | chr4_3:55642170-55642189 | Msa0649050:CDS | 35.0% | |
| TCTCGTGTTCGAAACAATTA+AGG | - | chr4_3:55642402-55642421 | Msa0649050:intron | 35.0% | |
| CTCGTGTTCGAAACAATTAA+GGG | - | chr4_3:55642403-55642422 | Msa0649050:intron | 35.0% | |
| TTATAGGGACCAAAAGTTGA+AGG | + | chr4_3:55642657-55642676 | None:intergenic | 35.0% | |
| ! | ATCAGATCTCTTTTGTTCCA+GGG | + | chr4_3:55643288-55643307 | None:intergenic | 35.0% |
| ! | AATCAGATCTCTTTTGTTCC+AGG | + | chr4_3:55643289-55643308 | None:intergenic | 35.0% |
| ! | TTTTGGCCATGTAACTGCAA+TGG | + | chr4_3:55638682-55638701 | None:intergenic | 40.0% |
| TACATGGCCAAAATTACCAC+CGG | - | chr4_3:55638689-55638708 | Msa0649050:three_prime_UTR | 40.0% | |
| AGAAACCCTTACAATGTCAC+CGG | - | chr4_3:55638722-55638741 | Msa0649050:three_prime_UTR | 40.0% | |
| CAAATTCCGGTGACATTGTA+AGG | + | chr4_3:55638731-55638750 | None:intergenic | 40.0% | |
| ! | TAGCTAAAGGGCATGAACTT+CGG | + | chr4_3:55638757-55638776 | None:intergenic | 40.0% |
| GCATAGCGACTATTAGCTAA+AGG | + | chr4_3:55638770-55638789 | None:intergenic | 40.0% | |
| AGTACCATTGTCTTCACGAA+TGG | + | chr4_3:55638795-55638814 | None:intergenic | 40.0% | |
| !! | GACATTTGGTTCTTCATGTG+GGG | - | chr4_3:55639004-55639023 | Msa0649050:intron | 40.0% |
| AAGTTATCTTGGAGGGCTTA+TGG | - | chr4_3:55639277-55639296 | Msa0649050:intron | 40.0% | |
| ! | TGTAAATTTTCCCAACGCCT+TGG | - | chr4_3:55639314-55639333 | Msa0649050:intron | 40.0% |
| GTTGTTGTCACATCACTGAA+AGG | - | chr4_3:55639349-55639368 | Msa0649050:intron | 40.0% | |
| AGCCTCCTGTGTAAAAAAAC+AGG | - | chr4_3:55639395-55639414 | Msa0649050:intron | 40.0% | |
| GCCTCCTGTGTAAAAAAACA+GGG | - | chr4_3:55639396-55639415 | Msa0649050:intron | 40.0% | |
| !!! | ACCCTGTTTTTTTACACAGG+AGG | + | chr4_3:55639400-55639419 | None:intergenic | 40.0% |
| TTATAAAAAAAGGGGCAGCC+CGG | + | chr4_3:55639495-55639514 | None:intergenic | 40.0% | |
| TCATACGCCAAAGGATTTGT+GGG | - | chr4_3:55639727-55639746 | Msa0649050:intron | 40.0% | |
| ACTCTTTCCCACAAATCCTT+TGG | + | chr4_3:55639737-55639756 | None:intergenic | 40.0% | |
| TACATCTGTCAGTGCAGTAA+AGG | + | chr4_3:55639898-55639917 | None:intergenic | 40.0% | |
| ! | TACTGCACTGACAGATGTAT+TGG | - | chr4_3:55639899-55639918 | Msa0649050:intron | 40.0% |
| TGACCAAAATGACTCAGATG+CGG | - | chr4_3:55639956-55639975 | Msa0649050:intron | 40.0% | |
| ! | TATCCGCATCTGAGTCATTT+TGG | + | chr4_3:55639962-55639981 | None:intergenic | 40.0% |
| !!! | GATCAATCAGGCCACTTTTA+TGG | + | chr4_3:55640156-55640175 | None:intergenic | 40.0% |
| AAAAGCAGCTGTGCTAGAAA+AGG | - | chr4_3:55640266-55640285 | Msa0649050:intron | 40.0% | |
| CTATTGGTACGCCTTCAAAA+CGG | - | chr4_3:55640387-55640406 | Msa0649050:intron | 40.0% | |
| ! | TCTGGTAAAGTCCGTTTTGA+AGG | + | chr4_3:55640401-55640420 | None:intergenic | 40.0% |
| ATCTCAAGCTGTTGAAGAAG+AGG | - | chr4_3:55640485-55640504 | Msa0649050:intron | 40.0% | |
| ! | ACTTGGTAATATGTTGAGCC+TGG | - | chr4_3:55640589-55640608 | Msa0649050:intron | 40.0% |
| ! | TTTTGCAATTCACGAGTCAC+AGG | - | chr4_3:55640708-55640727 | Msa0649050:intron | 40.0% |
| TTTGCAATTCACGAGTCACA+GGG | - | chr4_3:55640709-55640728 | Msa0649050:intron | 40.0% | |
| AATGGCAGCGATGATGAAAA+TGG | - | chr4_3:55640733-55640752 | Msa0649050:intron | 40.0% | |
| GATATGACTGCAGTATCTAG+AGG | + | chr4_3:55641084-55641103 | None:intergenic | 40.0% | |
| !! | CTTTTCCTTGTTTGGTTGGT+TGG | - | chr4_3:55641239-55641258 | Msa0649050:CDS | 40.0% |
| ! | TTGGTTGGTTGGGTAGAAAA+CGG | - | chr4_3:55641250-55641269 | Msa0649050:CDS | 40.0% |
| ! | TTTTTCTCATGTCGTGATGG+AGG | - | chr4_3:55641312-55641331 | Msa0649050:intron | 40.0% |
| !! | TTTTCTCATGTCGTGATGGA+GGG | - | chr4_3:55641313-55641332 | Msa0649050:intron | 40.0% |
| ATGGAGGGACGAAATATCAA+GGG | - | chr4_3:55641328-55641347 | Msa0649050:intron | 40.0% | |
| AGTTGTCTCTTCACTTGAGA+GGG | + | chr4_3:55641387-55641406 | None:intergenic | 40.0% | |
| TAGTTGTCTCTTCACTTGAG+AGG | + | chr4_3:55641388-55641407 | None:intergenic | 40.0% | |
| CATCCAAATGAGACATATGC+TGG | - | chr4_3:55641702-55641721 | Msa0649050:CDS | 40.0% | |
| GTGACTGCTTGAGTTCTATA+TGG | - | chr4_3:55642480-55642499 | Msa0649050:intron | 40.0% | |
| !! | GGTTTTGTGTTACGTTCTTC+AGG | - | chr4_3:55643408-55643427 | Msa0649050:five_prime_UTR | 40.0% |
| AAGGGAATGGTTTCGATGCA+GGG | + | chr4_3:55638564-55638583 | None:intergenic | 45.0% | |
| AAAGGGAATGGTTTCGATGC+AGG | + | chr4_3:55638565-55638584 | None:intergenic | 45.0% | |
| TGCAGCACGATGAGGTTATA+TGG | - | chr4_3:55638639-55638658 | Msa0649050:three_prime_UTR | 45.0% | |
| GCACAACCATTGCAGTTACA+TGG | - | chr4_3:55638673-55638692 | Msa0649050:three_prime_UTR | 45.0% | |
| ACCATTGTCTTCACGAATGG+TGG | + | chr4_3:55638792-55638811 | None:intergenic | 45.0% | |
| !! | TTTGGTTCTTCATGTGGGGT+AGG | - | chr4_3:55639008-55639027 | Msa0649050:intron | 45.0% |
| AAGGTCACACGTTCAAGTCT+TGG | - | chr4_3:55639368-55639387 | Msa0649050:intron | 45.0% | |
| ! | AGAAGGGGTCCCACAATTTT+GGG | + | chr4_3:55639441-55639460 | None:intergenic | 45.0% |
| AAAATTGTGGGACCCCTTCT+CGG | - | chr4_3:55639441-55639460 | Msa0649050:intron | 45.0% | |
| ACGCAGGAAATTTAGTGCAC+CGG | - | chr4_3:55639473-55639492 | Msa0649050:intron | 45.0% | |
| !! | AAGCACTTCTGAGACAGGTT+GGG | + | chr4_3:55639523-55639542 | None:intergenic | 45.0% |
| !! | TAAGCACTTCTGAGACAGGT+TGG | + | chr4_3:55639524-55639543 | None:intergenic | 45.0% |
| TGAAAGAGCTCATACGCCAA+AGG | - | chr4_3:55639718-55639737 | Msa0649050:intron | 45.0% | |
| CTCATACGCCAAAGGATTTG+TGG | - | chr4_3:55639726-55639745 | Msa0649050:intron | 45.0% | |
| AGTGGCCTGATTGATCATGT+TGG | - | chr4_3:55640160-55640179 | Msa0649050:intron | 45.0% | |
| AACGACACTGCCAAGAAAAG+AGG | - | chr4_3:55640209-55640228 | Msa0649050:intron | 45.0% | |
| TAGTACGCACGGGTAACATT+CGG | + | chr4_3:55640303-55640322 | None:intergenic | 45.0% | |
| ! | CAAAACGGACTTTACCAGAC+AGG | - | chr4_3:55640402-55640421 | Msa0649050:intron | 45.0% |
| TGCATATATCACCTCCTGTC+TGG | + | chr4_3:55640419-55640438 | None:intergenic | 45.0% | |
| ATTCACGAGTCACAGGGAAA+TGG | - | chr4_3:55640715-55640734 | Msa0649050:intron | 45.0% | |
| TCTACCCAACCAACCAAACA+AGG | + | chr4_3:55641247-55641266 | None:intergenic | 45.0% | |
| ! | TGGTTGGTTGGGTAGAAAAC+GGG | - | chr4_3:55641251-55641270 | Msa0649050:CDS | 45.0% |
| TTGGGTAGAAAACGGGAGAA+GGG | - | chr4_3:55641258-55641277 | Msa0649050:CDS | 45.0% | |
| GATGGAGGGACGAAATATCA+AGG | - | chr4_3:55641327-55641346 | Msa0649050:intron | 45.0% | |
| TGGAGGGACGAAATATCAAG+GGG | - | chr4_3:55641329-55641348 | Msa0649050:intron | 45.0% | |
| CAAGGGGGAGAAATAATGTG+AGG | - | chr4_3:55641345-55641364 | Msa0649050:intron | 45.0% | |
| CCTCCAGCATATGTCTCATT+TGG | + | chr4_3:55641708-55641727 | None:intergenic | 45.0% | |
| CCAAATGAGACATATGCTGG+AGG | - | chr4_3:55641705-55641724 | Msa0649050:CDS | 45.0% | |
| AATGAGACATATGCTGGAGG+CGG | - | chr4_3:55641708-55641727 | Msa0649050:CDS | 45.0% | |
| AGAACGGATCGCTTTATACG+AGG | + | chr4_3:55641990-55642009 | None:intergenic | 45.0% | |
| AGGTCAGCATGCAAAAATGG+AGG | + | chr4_3:55642282-55642301 | None:intergenic | 45.0% | |
| GTGAGGTCAGCATGCAAAAA+TGG | + | chr4_3:55642285-55642304 | None:intergenic | 45.0% | |
| !! | AAGTCGTAGGTAGCTTTGTG+AGG | + | chr4_3:55642302-55642321 | None:intergenic | 45.0% |
| GCAAGACAAAGAGAAGTCGT+AGG | + | chr4_3:55642315-55642334 | None:intergenic | 45.0% | |
| CGACTTCTCTTTGTCTTGCT+TGG | - | chr4_3:55642316-55642335 | Msa0649050:intron | 45.0% | |
| GTTTGAAAGGAAGCCAGTGT+TGG | - | chr4_3:55643354-55643373 | Msa0649050:five_prime_UTR | 45.0% | |
| !!! | ATGAATTTTTATATTTTTTA+CGG | + | chr4_3:55642832-55642851 | None:intergenic | 5.0% |
| !!! | AAAAAATTATAATTTCTTTT+TGG | - | chr4_3:55642871-55642890 | Msa0649050:intron | 5.0% |
| CACAAAGATGCAGCACGATG+AGG | - | chr4_3:55638631-55638650 | Msa0649050:three_prime_UTR | 50.0% | |
| GCCACCATTCGTGAAGACAA+TGG | - | chr4_3:55638788-55638807 | Msa0649050:intron | 50.0% | |
| ACAACTTTCCCGTTACGCCA+AGG | + | chr4_3:55639334-55639353 | None:intergenic | 50.0% | |
| ! | GAGAAGGGGTCCCACAATTT+TGG | + | chr4_3:55639442-55639461 | None:intergenic | 50.0% |
| AAATTGTGGGACCCCTTCTC+GGG | - | chr4_3:55639442-55639461 | Msa0649050:intron | 50.0% | |
| CGCAGGAAATTTAGTGCACC+GGG | - | chr4_3:55639474-55639493 | Msa0649050:intron | 50.0% | |
| !! | GGCATAAGCACTTCTGAGAC+AGG | + | chr4_3:55639528-55639547 | None:intergenic | 50.0% |
| GGGAAAGAGTTAAGCTGCCT+AGG | - | chr4_3:55639747-55639766 | Msa0649050:intron | 50.0% | |
| AGTGCCTGCTGGTAATTCCT+AGG | + | chr4_3:55639767-55639786 | None:intergenic | 50.0% | |
| CAATGACTTCAAGTGCCTGC+TGG | + | chr4_3:55639778-55639797 | None:intergenic | 50.0% | |
| CTGTCAGTGCAGTAAAGGTC+AGG | + | chr4_3:55639893-55639912 | None:intergenic | 50.0% | |
| CTCAGATGCGGATACGTATG+AGG | - | chr4_3:55639968-55639987 | Msa0649050:intron | 50.0% | |
| ! | AACGGACTTTACCAGACAGG+AGG | - | chr4_3:55640405-55640424 | Msa0649050:intron | 50.0% |
| GTTGGGTAGAAAACGGGAGA+AGG | - | chr4_3:55641257-55641276 | Msa0649050:CDS | 50.0% | |
| GGAGGGACGAAATATCAAGG+GGG | - | chr4_3:55641330-55641349 | Msa0649050:intron | 50.0% | |
| TTTACCTCGCTCATCTAGCC+TGG | - | chr4_3:55641455-55641474 | Msa0649050:CDS | 50.0% | |
| TTACCTCGCTCATCTAGCCT+GGG | - | chr4_3:55641456-55641475 | Msa0649050:CDS | 50.0% | |
| ATGAGACATATGCTGGAGGC+GGG | - | chr4_3:55641709-55641728 | Msa0649050:CDS | 50.0% | |
| GAAAGCGAAGGTCCTCATTG+AGG | - | chr4_3:55641948-55641967 | Msa0649050:CDS | 50.0% | |
| AACACGACGATGCTGTCGAA+AGG | - | chr4_3:55643155-55643174 | Msa0649050:CDS | 50.0% | |
| TGCTGTCGAAAGGCAAAGAG+CGG | - | chr4_3:55643165-55643184 | Msa0649050:CDS | 50.0% | |
| TTCCCAACGCCTTGGCGTAA+CGG | - | chr4_3:55639322-55639341 | Msa0649050:intron | 55.0% | |
| GCTGCCTAGGAATTACCAGC+AGG | - | chr4_3:55639760-55639779 | Msa0649050:intron | 55.0% | |
| TCCCAACGCCTTGGCGTAAC+GGG | - | chr4_3:55639323-55639342 | Msa0649050:intron | 60.0% | |
| ! | TCCCGTTACGCCAAGGCGTT+GGG | + | chr4_3:55639327-55639346 | None:intergenic | 60.0% |
| TTCCCGTTACGCCAAGGCGT+TGG | + | chr4_3:55639328-55639347 | None:intergenic | 60.0% | |
| GATCCCAGGCTAGATGAGCG+AGG | + | chr4_3:55641462-55641481 | None:intergenic | 60.0% | |
| CGTGTGCAGAGCCCGAGAAG+GGG | + | chr4_3:55639456-55639475 | None:intergenic | 65.0% | |
| GCGTGTGCAGAGCCCGAGAA+GGG | + | chr4_3:55639457-55639476 | None:intergenic | 65.0% | |
| TGCGTGTGCAGAGCCCGAGA+AGG | + | chr4_3:55639458-55639477 | None:intergenic | 65.0% | |
| TTCTCGGGCTCTGCACACGC+AGG | - | chr4_3:55639457-55639476 | Msa0649050:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 55638516 | 55643431 | 55638516 | ID=Msa0649050;Name=Msa0649050 |
| chr4_3 | mRNA | 55638516 | 55643431 | 55638516 | ID=Msa0649050-mRNA-1;Parent=Msa0649050;Name=Msa0649050-mRNA-1;_AED=0.05;_eAED=0.05;_QI=122|1|1|1|1|1|8|236|306 |
| chr4_3 | exon | 55638516 | 55638796 | 55638516 | ID=Msa0649050-mRNA-1:exon:14311;Parent=Msa0649050-mRNA-1 |
| chr4_3 | exon | 55639978 | 55640111 | 55639978 | ID=Msa0649050-mRNA-1:exon:14310;Parent=Msa0649050-mRNA-1 |
| chr4_3 | exon | 55641193 | 55641313 | 55641193 | ID=Msa0649050-mRNA-1:exon:14309;Parent=Msa0649050-mRNA-1 |
| chr4_3 | exon | 55641432 | 55641575 | 55641432 | ID=Msa0649050-mRNA-1:exon:14308;Parent=Msa0649050-mRNA-1 |
| chr4_3 | exon | 55641660 | 55641747 | 55641660 | ID=Msa0649050-mRNA-1:exon:14307;Parent=Msa0649050-mRNA-1 |
| chr4_3 | exon | 55641937 | 55642034 | 55641937 | ID=Msa0649050-mRNA-1:exon:14306;Parent=Msa0649050-mRNA-1 |
| chr4_3 | exon | 55642139 | 55642257 | 55642139 | ID=Msa0649050-mRNA-1:exon:14305;Parent=Msa0649050-mRNA-1 |
| chr4_3 | exon | 55643138 | 55643431 | 55643138 | ID=Msa0649050-mRNA-1:exon:14304;Parent=Msa0649050-mRNA-1 |
| chr4_3 | five_prime_UTR | 55643310 | 55643431 | 55643310 | ID=Msa0649050-mRNA-1:five_prime_utr;Parent=Msa0649050-mRNA-1 |
| chr4_3 | CDS | 55643138 | 55643309 | 55643138 | ID=Msa0649050-mRNA-1:cds;Parent=Msa0649050-mRNA-1 |
| chr4_3 | CDS | 55642139 | 55642257 | 55642139 | ID=Msa0649050-mRNA-1:cds;Parent=Msa0649050-mRNA-1 |
| chr4_3 | CDS | 55641937 | 55642034 | 55641937 | ID=Msa0649050-mRNA-1:cds;Parent=Msa0649050-mRNA-1 |
| chr4_3 | CDS | 55641660 | 55641747 | 55641660 | ID=Msa0649050-mRNA-1:cds;Parent=Msa0649050-mRNA-1 |
| chr4_3 | CDS | 55641432 | 55641575 | 55641432 | ID=Msa0649050-mRNA-1:cds;Parent=Msa0649050-mRNA-1 |
| chr4_3 | CDS | 55641193 | 55641313 | 55641193 | ID=Msa0649050-mRNA-1:cds;Parent=Msa0649050-mRNA-1 |
| chr4_3 | CDS | 55639978 | 55640111 | 55639978 | ID=Msa0649050-mRNA-1:cds;Parent=Msa0649050-mRNA-1 |
| chr4_3 | CDS | 55638752 | 55638796 | 55638752 | ID=Msa0649050-mRNA-1:cds;Parent=Msa0649050-mRNA-1 |
| chr4_3 | three_prime_UTR | 55638516 | 55638751 | 55638516 | ID=Msa0649050-mRNA-1:three_prime_utr;Parent=Msa0649050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
