AlfalfaGEDB | Msa1093530

M. sativa cultivar zhongmu-4 / Msa1093530

KEGG: K02905
GO: GO:0000003 GO:0000184 GO:0000956 GO:0002181 GO:0003674 GO:0003682 GO:0003735 GO:0005198 GO:0005488 GO:0005539 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0007155 GO:0007275 GO:0007565 GO:0007566 GO:0007568 GO:0008104 GO:0008150 GO:0008152 GO:0008201 GO:0008283 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0015934 GO:0016020 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0019538 GO:0019898 GO:0022414 GO:0022610 GO:0022625 GO:0022626 GO:0030867 GO:0031090 GO:0031589 GO:0031974 GO:0031981 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0035264 GO:0040007 GO:0042175 GO:0042788 GO:0042886 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048519 GO:0048589 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0097367 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901681 GO:1990904
PFAM: PF01779.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1093530	PNX84403.1	98.333	60	1	0	1	60	1	60	6.16e-34	119

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1093530	sp\|Q9M7X7\|RL291_ARATH	85.000	60	9	0	1	60	1	60	4.91e-30	102

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1093530	A0A2K3M0X4	98.333	60	1	0	1	60	1	60	2.94e-34	119

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa1093530	0.859394	4.264500e-63	-8.615850e-47
Msa0002490	Msa1093530	0.842547	2.419498e-58	-8.615850e-47
Msa0002750	Msa1093530	0.838807	2.308704e-57	-8.615850e-47
Msa0002790	Msa1093530	0.816616	5.044465e-52	-8.615850e-47
Msa0003700	Msa1093530	0.815083	1.108375e-51	-8.615850e-47
Msa0003720	Msa1093530	0.875667	2.572204e-68	-8.615850e-47
Msa0003780	Msa1093530	0.855768	5.055088e-62	-8.615850e-47
Msa0003890	Msa1093530	0.829206	5.859792e-55	-8.615850e-47
Msa0004860	Msa1093530	0.804543	2.053639e-49	-8.615850e-47
Msa0004920	Msa1093530	0.809490	1.843761e-50	-8.615850e-47

Showing 1 to 10 of 1,233 entries

Previous1 2 3 4 5…124Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1093530	MtrunA17_Chr4g0068191	98.333	60	1	0	1	60	1	60	5.94e-38	119
Msa1093530	MtrunA17_Chr4g0068181	95.000	60	3	0	1	60	1	60	4.02e-37	117

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1093530	AT3G06680.1	85.000	60	9	1	60	23	82	3.09e-31	103
Msa1093530	AT3G06700.1	85.000	60	9	1	60	1	60	4.99e-31	102
Msa1093530	AT3G06700.2	85.000	60	9	1	60	1	60	4.99e-31	102
Msa1093530	AT3G06700.3	85.000	60	9	1	60	1	60	4.99e-31	102
Msa1093530	AT3G06680.2	85.000	60	9	1	60	1	60	6.78e-31	102
Msa1093530	AT3G06680.3	85.000	60	9	1	60	1	60	6.78e-31	102

Showing 1 to 6 of 6 entries

Previous1Next

Find 34 sgRNAs with CRISPR-Local

Find 46 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCTACAGTTTATATTT+CGG	0.332398	7_3:+13464113	None:intergenic
AAGTGTTTGTTTGAAGTTGA+AGG	0.438744	7_3:-13464170	Msa1093530:three_prime_UTR
ACTTGTGACTTGATTTAGTT+TGG	0.352767	7_3:-13464136	Msa1093530:three_prime_UTR
AGAATTGTGTGCCTAAACTC+AGG	0.570831	7_3:+13464284	None:intergenic
AGATGGATCCAAAGTTCTTG+AGG	0.596761	7_3:-13464564	Msa1093530:CDS
AGGGGTATATATATGTGTGT+TGG	0.464991	7_3:+13464842	None:intergenic
AGTAAAGTGTCGATCTCTAA+TGG	0.363459	7_3:-13464486	Msa1093530:exon
AGTGTTTGTTTGAAGTTGAA+GGG	0.501632	7_3:-13464169	Msa1093530:three_prime_UTR
ATCGTCACACTTCAACCAAA+GGG	0.488627	7_3:-13464681	Msa1093530:CDS
ATGATGAATACATACCCCTT+TGG	0.493133	7_3:+13464666	None:intergenic

Showing 1 to 10 of 34 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTGTGATTGATTACTGTAGA+TGG	-	chr7_3:13464385-13464404	Msa1093530:three_prime_UTR	30.0%
ACTTGTGACTTGATTTAGTT+TGG	-	chr7_3:13464830-13464849	Msa1093530:five_prime_UTR	30.0%
GGGGTATATATATGTGTGTT+GGG	+	chr7_3:13464126-13464145	None:intergenic	35.0%
GGTTTATCGAATTTCAGAGA+TGG	-	chr7_3:13464187-13464206	Msa1093530:three_prime_UTR	35.0%
TCTTACAAAGCTCACAAGAA+TGG	-	chr7_3:13464242-13464261	Msa1093530:three_prime_UTR	35.0%
ATGATGAATACATACCCCTT+TGG	+	chr7_3:13464303-13464322	None:intergenic	35.0%
TTCTTCCAAAGATGCAGCTA+GGG	+	chr7_3:13464164-13464183	None:intergenic	40.0%
ATTCTTCCAAAGATGCAGCT+AGG	+	chr7_3:13464165-13464184	None:intergenic	40.0%
ATGGCATCAAAAAGCCAAAG+AGG	-	chr7_3:13464261-13464280	Msa1093530:three_prime_UTR	40.0%
ATCGTCACACTTCAACCAAA+GGG	-	chr7_3:13464285-13464304	Msa1093530:three_prime_UTR	40.0%

Showing 1 to 10 of 46 entries

Previous1 2 3 4 5Next

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	13464123	13464865	13464123	ID=Msa1093530;Name=Msa1093530
chr7_3	mRNA	13464123	13464865	13464123	ID=Msa1093530-mRNA-1;Parent=Msa1093530;Name=Msa1093530-mRNA-1;_AED=0.36;_eAED=0.36;_QI=83\|1\|1\|1\|1\|1\|2\|381\|60
chr7_3	exon	13464123	13464584	13464123	ID=Msa1093530-mRNA-1:exon:3201;Parent=Msa1093530-mRNA-1
chr7_3	exon	13464681	13464865	13464681	ID=Msa1093530-mRNA-1:exon:3200;Parent=Msa1093530-mRNA-1
chr7_3	five_prime_UTR	13464783	13464865	13464783	ID=Msa1093530-mRNA-1:five_prime_utr;Parent=Msa1093530-mRNA-1
chr7_3	CDS	13464681	13464782	13464681	ID=Msa1093530-mRNA-1:cds;Parent=Msa1093530-mRNA-1
chr7_3	CDS	13464504	13464584	13464504	ID=Msa1093530-mRNA-1:cds;Parent=Msa1093530-mRNA-1
chr7_3	three_prime_UTR	13464123	13464503	13464123	ID=Msa1093530-mRNA-1:three_prime_utr;Parent=Msa1093530-mRNA-1

Gene Sequence	>Msa1093530 ATGGCGAAATCGAAGAATCACACCGCTCACAACCAGTCTTACAAAGCTCACAAGAATGGCATCAAAAAGCCAAAGAGGCATCGTCACACTTCAACCAAAGGGATGGATCCAAAGTTCTTGAGGAACCAGAGGTATGCAAGGAAGCATAACAAGAAAAATGGTGAAATTGCAGAAGAAGAGTAA
Protein sequence	>Msa1093530 MAKSKNHTAHNQSYKAHKNGIKKPKRHRHTSTKGMDPKFLRNQRYARKHNKKNGEIAEEE*