AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0486210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0486210 MtrunA17_Chr6g0488911 79.158 475 15 4 278 668 728 1202 0.0 704
Msa0486210 MtrunA17_Chr6g0488911 90.391 281 7 4 4 264 3 283 1.17e-175 532
Msa0486210 MtrunA17_Chr1g0213911 78.105 475 19 4 278 668 177 650 0.0 698
Msa0486210 MtrunA17_Chr8g0368401 25.728 412 226 13 311 666 1095 1482 3.80e-23 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0486210 AT5G26570.1 53.265 490 129 6 278 667 706 1195 6.85e-145 452
Msa0486210 AT5G26570.1 42.857 238 126 3 54 284 49 283 1.69e-58 214
Msa0486210 AT5G26570.2 42.857 238 126 3 54 284 49 283 2.21e-58 212
Msa0486210 AT5G26570.2 49.505 101 22 1 278 349 706 806 1.02e-17 88.2
Msa0486210 AT4G24450.2 27.206 408 220 14 311 666 895 1277 1.00e-25 114
Msa0486210 AT4G24450.1 27.206 408 220 14 311 666 895 1277 1.00e-25 114
Msa0486210 AT4G24450.3 27.206 408 220 14 311 666 895 1277 1.00e-25 114
Msa0486210 AT1G10760.2 25.547 411 226 14 311 666 1013 1398 9.83e-22 101
Msa0486210 AT1G10760.3 25.547 411 226 14 311 666 1013 1398 9.83e-22 101
Msa0486210 AT1G10760.1 25.547 411 226 14 311 666 1013 1398 9.83e-22 101

Find 211 sgRNAs with CRISPR-Local

Find 443 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCATTGTCTTCAGTTTC+TGG 0.094656 3_4:+3978852 Msa0486210:CDS
GCTTCCTTTCAGGTTCCTTC+TGG 0.155466 3_4:+3979314 Msa0486210:CDS
CCCAAGTCCTTTGTGTTTCA+TGG 0.188668 3_4:-3975492 None:intergenic
ATTACCTACCTGACTGTATT+TGG 0.192992 3_4:-3978103 None:intergenic
GCTGATATTCAAAGGCTTAT+TGG 0.194561 3_4:+3977780 Msa0486210:CDS
TGAATCCTCTTGGCTGATTA+TGG 0.233134 3_4:-3974807 None:intergenic
CAGATGCCATTGGCCAAGTA+TGG 0.234162 3_4:+3979653 Msa0486210:CDS
GGTGACCATGTTGTGCTTCT+TGG 0.252280 3_4:+3975073 Msa0486210:CDS
TCCTCTTCAGTTGACCTTGA+TGG 0.269108 3_4:+3978003 Msa0486210:CDS
CTGATATTCAAAGGCTTATT+GGG 0.271077 3_4:+3977781 Msa0486210:CDS
TTCATATTTCTACTGGGGTT+GGG 0.275376 3_4:-3980178 None:intergenic
CCAAGTTGTCGACGGAAAAC+TGG 0.278406 3_4:-3980048 None:intergenic
CTTCCTTTCAGGTTCCTTCT+GGG 0.279361 3_4:+3979315 Msa0486210:CDS
ATTAGGATTCGAATTCCTTC+TGG 0.283921 3_4:-3974773 None:intergenic
TTGTTAACAATGAGGATAAT+AGG 0.290979 3_4:-3977437 None:intergenic
GCTGAGATTGCTTCTGGCCT+TGG 0.293888 3_4:+3979838 Msa0486210:CDS
GTGGAGGCTGAGATTGCTTC+TGG 0.297947 3_4:+3979832 Msa0486210:CDS
CCACCCATGTTCCATTGAAT+TGG 0.308393 3_4:+3975122 Msa0486210:CDS
TATGATACCTAGGTTGGGTT+TGG 0.323525 3_4:-3974903 None:intergenic
ACCATTTGGATCCATGGAAT+TGG 0.338771 3_4:+3979346 Msa0486210:CDS
TCATATTTCTACTGGGGTTG+GGG 0.340681 3_4:-3980177 None:intergenic
ATTAATGTCTTCTTTGTTGT+TGG 0.342523 3_4:-3975011 None:intergenic
CGGTGCAGGGCCTGCGGATG+GGG 0.349145 3_4:+3979975 Msa0486210:CDS
GCGGTGCAGGGCCTGCGGAT+GGG 0.354005 3_4:+3979974 Msa0486210:CDS
GATCTGGTGAAAGCATTTCT+TGG 0.362729 3_4:-3979759 None:intergenic
CGCGGTGCAGGGCCTGCGGA+TGG 0.382100 3_4:+3979973 Msa0486210:CDS
TGGGATACCTCAGGTCTTCA+AGG 0.383554 3_4:+3975511 Msa0486210:CDS
GGCACTTTACACTGGGAATC+TGG 0.387828 3_4:+3975226 Msa0486210:CDS
GATGTTCCTGCTTTCTCTGC+TGG 0.389751 3_4:+3978072 Msa0486210:CDS
TTATGGTTCCGATTCCGATT+AGG 0.394702 3_4:-3974790 None:intergenic
ATTCATATTTCTACTGGGGT+TGG 0.394846 3_4:-3980179 None:intergenic
GAACAAAACACACCAGACTA+TGG 0.395168 3_4:+3975306 Msa0486210:CDS
GGTCCAGGAGCCCAACTGTT+TGG 0.395487 3_4:-3975101 None:intergenic
GAGTTACTTGTACGCGGTGC+AGG 0.398801 3_4:+3979961 Msa0486210:CDS
GGTGATCGCCGGCGTTGAAA+TGG 0.414806 3_4:-3975171 None:intergenic
GGGATCAAAGCGCAAGGAAT+TGG 0.415864 3_4:+3975557 Msa0486210:CDS
CCATTTGGTGTCCAATTCAA+TGG 0.417418 3_4:-3975133 None:intergenic
TTCGAATTCCTTCTGGGACT+GGG 0.417580 3_4:-3974766 None:intergenic
GGCTTATTGGGTCATGTGTA+AGG 0.417870 3_4:+3977793 Msa0486210:CDS
GTGTTGAGCCGCCGAGCTGC+TGG 0.419748 3_4:+3979700 Msa0486210:CDS
TTGCCTCTCAAGTTTGTTCA+AGG 0.420915 3_4:+3975535 Msa0486210:CDS
CCAAGTCCTTTGTGTTTCAT+GGG 0.422081 3_4:-3975491 None:intergenic
TTAGGATTCGAATTCCTTCT+GGG 0.425632 3_4:-3974772 None:intergenic
TAAATTATTACCTATAATGT+TGG 0.426969 3_4:+3975609 Msa0486210:CDS
GTCAACGCCTTTGTGCAGTT+TGG 0.427812 3_4:+3980070 Msa0486210:CDS
AATGACAGTTTACAGCGATC+AGG 0.429924 3_4:+3979283 Msa0486210:intron
CAACCAAACAGTTGGGCTCC+TGG 0.430043 3_4:+3975098 Msa0486210:CDS
TTAGATCACCAAGTTGAATT+CGG 0.430046 3_4:+3975052 Msa0486210:CDS
ATGATACCTAGGTTGGGTTT+GGG 0.430154 3_4:-3974902 None:intergenic
TTGTCTTCAGTTTCTGGTAA+AGG 0.434711 3_4:+3978858 Msa0486210:CDS
GATGCTGAGACACAGACTTC+CGG 0.440912 3_4:+3978801 Msa0486210:CDS
CAGCGCCAATGTGGAGGACT+TGG 0.443634 3_4:+3979561 Msa0486210:intron
ATATCATGTGGGAAATTTGA+TGG 0.446585 3_4:+3979901 Msa0486210:CDS
AATTGTTATCCTGGTCAGTT+GGG 0.449370 3_4:-3979807 None:intergenic
TAGGTTGAAAGAATTGTTCC+TGG 0.453289 3_4:+3977389 Msa0486210:intron
CAACAGAAGAATTGCCATCA+AGG 0.454799 3_4:-3978017 None:intergenic
ATCTGCAAAGACTGTTTGAT+TGG 0.457317 3_4:-3979635 None:intergenic
GAAGTCTGTGTCTCAGCATC+AGG 0.457590 3_4:-3978798 None:intergenic
GAAGGAATTCGAATCCTAAT+CGG 0.457612 3_4:+3974776 Msa0486210:CDS
TGCTGTAATCCACCGTCAAA+TGG 0.461217 3_4:-3980005 None:intergenic
CAATGGAACATGGGTGGTCC+AGG 0.464075 3_4:-3975116 None:intergenic
ATTCGAATTCCTTCTGGGAC+TGG 0.464628 3_4:-3974767 None:intergenic
TTGGGTTTGGGTGGAAGAGG+AGG 0.465531 3_4:-3974890 None:intergenic
GCTCCTCTTTCAGATGCAGC+AGG 0.466346 3_4:+3975400 Msa0486210:CDS
GCCTCTCAAGTTTGTTCAAG+GGG 0.467475 3_4:+3975537 Msa0486210:CDS
TGATTGGAAGGACTCACATT+GGG 0.476493 3_4:-3979619 None:intergenic
AGGTTGGGTTTGGGTGGAAG+AGG 0.476698 3_4:-3974893 None:intergenic
CAATGATGAATTTGAATTCA+AGG 0.476919 3_4:-3975192 None:intergenic
CTTCTCTAGCTCCAATTCCA+TGG 0.477253 3_4:-3979357 None:intergenic
CGCAAGGAATTGGTGGAGAA+AGG 0.477379 3_4:+3975567 Msa0486210:CDS
CCCATGAAACACAAAGGACT+TGG 0.478253 3_4:+3975491 Msa0486210:CDS
GCAAAGACTGTTTGATTGGA+AGG 0.478515 3_4:-3979631 None:intergenic
GTTCGGATGCCCACAGGATG+TGG 0.479660 3_4:+3980110 Msa0486210:CDS
GAATTGTTATCCTGGTCAGT+TGG 0.482327 3_4:-3979808 None:intergenic
CCCAGTGTAAAGTGCCATCC+TGG 0.482451 3_4:-3975219 None:intergenic
AAGGAAGTAACTCCATAGTC+TGG 0.482731 3_4:-3975318 None:intergenic
GTATTAAACTTGCCCAATGC+TGG 0.484652 3_4:+3975259 Msa0486210:CDS
GAATTGGACACCAAATGGTT+GGG 0.485292 3_4:+3975138 Msa0486210:CDS
TCTTGGATCAACCAAACAGT+TGG 0.488116 3_4:+3975090 Msa0486210:CDS
AAGAGATATGATACCTAGGT+TGG 0.488768 3_4:-3974909 None:intergenic
ACCAGGATGGCACTTTACAC+TGG 0.489768 3_4:+3975218 Msa0486210:CDS
GTCTGAAAATGACCAGCATT+GGG 0.490068 3_4:-3975271 None:intergenic
CCTTGCCACTCTCCTACAAA+AGG 0.490365 3_4:-3975430 None:intergenic
CCATTGAATTGGACACCAAA+TGG 0.494059 3_4:+3975133 Msa0486210:CDS
GCCTCAGAAGGAAGCTTCAA+TGG 0.494456 3_4:+3979726 Msa0486210:CDS
CAAATTCATCATTGTCCACC+AGG 0.495495 3_4:+3975201 Msa0486210:CDS
TGCCTCTCAAGTTTGTTCAA+GGG 0.498175 3_4:+3975536 Msa0486210:CDS
CTTGGATCAACCAAACAGTT+GGG 0.498856 3_4:+3975091 Msa0486210:CDS
GGTCTGAAAATGACCAGCAT+TGG 0.500178 3_4:-3975272 None:intergenic
TGCAGGGCCTGCGGATGGGG+AGG 0.500294 3_4:+3979978 Msa0486210:CDS
TTCTGTTCATTGAAATTCAA+AGG 0.502073 3_4:-3975337 None:intergenic
TGCAGTACAAATGATAGATC+TGG 0.502410 3_4:-3979775 None:intergenic
TTGGCTGGAATGTCAGCAGC+TGG 0.503812 3_4:+3979580 Msa0486210:CDS
GCCAATGTGGAGGACTTGGC+TGG 0.503814 3_4:+3979565 Msa0486210:CDS
GCCATTGAAGCTTCCTTCTG+AGG 0.504435 3_4:-3979727 None:intergenic
TTTGTGTTTCATGGGTCTGA+TGG 0.505071 3_4:-3975483 None:intergenic
ACAGTCTTTGCAGATGCCAT+TGG 0.505593 3_4:+3979643 Msa0486210:CDS
TGTACAGTGAAGCCCATACT+TGG 0.510689 3_4:-3979666 None:intergenic
AAGTCGCATACCCAACCATT+TGG 0.512231 3_4:-3975148 None:intergenic
TATCATGTGGGAAATTTGAT+GGG 0.512524 3_4:+3979902 Msa0486210:CDS
TGAATTGGACACCAAATGGT+TGG 0.514554 3_4:+3975137 Msa0486210:CDS
AGCTGCTGGTGTGCCTCAGA+AGG 0.514713 3_4:+3979714 Msa0486210:CDS
CATGGTCACCGAATTCAACT+TGG 0.514895 3_4:-3975060 None:intergenic
TTCATGGGTCTGATGGTCGT+TGG 0.517749 3_4:-3975476 None:intergenic
GAGGATGATGAAGATAATGA+TGG 0.519702 3_4:-3974838 None:intergenic
AAACTCTAGCTTCAGTAACC+CGG 0.519857 3_4:+3979863 Msa0486210:CDS
AGAGATATGATACCTAGGTT+GGG 0.520879 3_4:-3974908 None:intergenic
CAAGTTGTCGACGGAAAACT+GGG 0.521663 3_4:-3980047 None:intergenic
GGTGCAAAGGCGGCTGCATG+TGG 0.525436 3_4:+3978822 Msa0486210:CDS
CCTCCACAGAATTGTTATCC+TGG 0.525913 3_4:-3979816 None:intergenic
ATGACAGTTTACAGCGATCA+GGG 0.526473 3_4:+3979284 Msa0486210:intron
TACTATGAGCCCAACTGACC+AGG 0.526612 3_4:+3979798 Msa0486210:CDS
ACATGCAGCCGCCTTTGCAC+CGG 0.527139 3_4:-3978820 None:intergenic
GAAGGAACCTGAAAGGAAGC+AGG 0.528930 3_4:-3979311 None:intergenic
ATTCGAATCCTAATCGGAAT+CGG 0.529683 3_4:+3974782 Msa0486210:CDS
GATGTGGAAGGATGTCTTGT+TGG 0.534790 3_4:+3980126 Msa0486210:CDS
TTCCTTTCAGGTTCCTTCTG+GGG 0.537441 3_4:+3979316 Msa0486210:CDS
TCCAATTCCATGGATCCAAA+TGG 0.538812 3_4:-3979347 None:intergenic
ATCAAAGCGCAAGGAATTGG+TGG 0.540940 3_4:+3975560 Msa0486210:CDS
AGGTTGGAAGCATCTGCCGC+TGG 0.541808 3_4:+3977964 Msa0486210:intron
ATAGGACCTTCCACTGGAGA+TGG 0.542144 3_4:-3977419 None:intergenic
AGATGCCATTGGCCAAGTAT+GGG 0.546034 3_4:+3979654 Msa0486210:CDS
TTTGAATTCAAGGTGATCGC+CGG 0.546998 3_4:-3975182 None:intergenic
TATCCATTCATATTTCTACT+GGG 0.548101 3_4:-3980184 None:intergenic
GGCCCTGCTGCATCTGAAAG+AGG 0.548861 3_4:-3975403 None:intergenic
TGGGTTGTTACCATCTCCAG+TGG 0.549865 3_4:+3977409 Msa0486210:CDS
TGGATGACCTCCCCATCCGC+AGG 0.551136 3_4:-3979985 None:intergenic
GGAAGAAGAATGAATCCTCT+TGG 0.551510 3_4:-3974817 None:intergenic
TGGGGAGGTCATCCATTTGA+CGG 0.553323 3_4:+3979993 Msa0486210:CDS
AAACCGACACGAGACGGTGA+TGG 0.553782 3_4:-3974864 None:intergenic
TAGAATCTCCAAATACAGTC+AGG 0.554580 3_4:+3978095 Msa0486210:CDS
CGACACGAGACGGTGATGGA+TGG 0.558744 3_4:-3974860 None:intergenic
CAAAGCTGACGGTGATGAAG+AGG 0.560582 3_4:+3977457 Msa0486210:CDS
AACTCTAGCTTCAGTAACCC+GGG 0.562114 3_4:+3979864 Msa0486210:CDS
TGATGGGCTTGTGCAAACAC+TGG 0.566697 3_4:+3979918 Msa0486210:CDS
CCAGGATGGCACTTTACACT+GGG 0.568160 3_4:+3975219 Msa0486210:CDS
ATACCTAGGTTGGGTTTGGG+TGG 0.568602 3_4:-3974899 None:intergenic
TTGTTACCATCTCCAGTGGA+AGG 0.569816 3_4:+3977413 Msa0486210:CDS
GAGAAAGTTCGGATGCCCAC+AGG 0.572628 3_4:+3980104 Msa0486210:CDS
TAATAATGATTATGAGAAGG+AGG 0.576198 3_4:+3975366 Msa0486210:CDS
ATTCTACCAGCAGAGAAAGC+AGG 0.577027 3_4:-3978078 None:intergenic
AGGTTGAAAGAATTGTTCCT+GGG 0.577202 3_4:+3977390 Msa0486210:intron
AGTTACTTGTACGCGGTGCA+GGG 0.577603 3_4:+3979962 Msa0486210:CDS
CTCCTCTTTCAGATGCAGCA+GGG 0.578168 3_4:+3975401 Msa0486210:CDS
AGGCAGAAACCGACACGAGA+CGG 0.579682 3_4:-3974870 None:intergenic
CTTCCACCCAAACCCAACCT+AGG 0.582255 3_4:+3974896 Msa0486210:CDS
CTCATTGTTAACAAAGCTGA+CGG 0.584239 3_4:+3977446 Msa0486210:CDS
CGTCAGCTTTGTTAACAATG+AGG 0.586566 3_4:-3977445 None:intergenic
CAAAGGACTTGGGATACCTC+AGG 0.590864 3_4:+3975502 Msa0486210:CDS
GACACAGACTTCCGGTGCAA+AGG 0.592849 3_4:+3978809 Msa0486210:CDS
TTCATCATTGTCCACCAGGA+TGG 0.593734 3_4:+3975205 Msa0486210:CDS
GGCTTCACTGTACACACGAA+GGG 0.594462 3_4:+3979675 Msa0486210:CDS
GTGTCCAATTCAATGGAACA+TGG 0.594749 3_4:-3975126 None:intergenic
TTCAAGGGGATCAAAGCGCA+AGG 0.595435 3_4:+3975551 Msa0486210:CDS
CACTCTCCTACAAAAGGACT+CGG 0.595482 3_4:-3975424 None:intergenic
GCCATCAAGGTCAACTGAAG+AGG 0.595713 3_4:-3978004 None:intergenic
TTGATTGGAAGGACTCACAT+TGG 0.597372 3_4:-3979620 None:intergenic
AGACATCCTTCCACATCCTG+TGG 0.598150 3_4:-3980120 None:intergenic
ACAGACTTCCGGTGCAAAGG+CGG 0.598486 3_4:+3978812 Msa0486210:CDS
TGCGACTTCCATTTCAACGC+CGG 0.599134 3_4:+3975163 Msa0486210:CDS
TGTACGCGGTGCAGGGCCTG+CGG 0.599419 3_4:+3979969 Msa0486210:CDS
TAAAGACTTGAATATTTCAG+TGG 0.600082 3_4:-3979387 None:intergenic
CCATGAAACACAAAGGACTT+GGG 0.601641 3_4:+3975492 Msa0486210:CDS
ATCCATTCATATTTCTACTG+GGG 0.601788 3_4:-3980183 None:intergenic
TAATAATAATGATTATGAGA+AGG 0.602235 3_4:+3975363 Msa0486210:CDS
ACACCATGGCGTATATCATG+TGG 0.604594 3_4:+3979889 Msa0486210:CDS
GGGACTGGGAGGATGAATGA+TGG 0.604915 3_4:-3974752 None:intergenic
TTGATCCAGCGCCAATGTGG+AGG 0.606973 3_4:+3979555 Msa0486210:intron
TTCATCCTCCCAGTCCCAGA+AGG 0.610101 3_4:+3974758 Msa0486210:CDS
CGGAAAACTGGGTCAACTGA+CGG 0.610217 3_4:-3980036 None:intergenic
ATATACGCCATGGTGTACCC+CGG 0.611453 3_4:-3979882 None:intergenic
CATCCATCACCGTCTCGTGT+CGG 0.611495 3_4:+3974861 Msa0486210:CDS
TCTGAGGCACACCAGCAGCT+CGG 0.611849 3_4:-3979711 None:intergenic
GGCATCCGAACTTTCTCTCG+AGG 0.611937 3_4:-3980098 None:intergenic
TATACGCCATGGTGTACCCC+GGG 0.611957 3_4:-3979881 None:intergenic
GGCGTTGACCAAGTTGTCGA+CGG 0.612768 3_4:-3980056 None:intergenic
AATGGTAAAACTGCCCCAGA+AGG 0.615771 3_4:-3979329 None:intergenic
CACGAGACGGTGATGGATGG+AGG 0.615820 3_4:-3974857 None:intergenic
TCCAGCCAAGTCCTCCACAT+TGG 0.618432 3_4:-3979566 None:intergenic
TGCCCCAGAAGGAACCTGAA+AGG 0.621431 3_4:-3979318 None:intergenic
AGGATAATAGGACCTTCCAC+TGG 0.621720 3_4:-3977425 None:intergenic
GACATCCTTCCACATCCTGT+GGG 0.623860 3_4:-3980119 None:intergenic
TCCCCTTGAACAAACTTGAG+AGG 0.625441 3_4:-3975538 None:intergenic
ACATTTATATTGTTCAGACA+AGG 0.626137 3_4:+3980154 Msa0486210:CDS
TGACCAGGATAACAATTCTG+TGG 0.628898 3_4:+3979813 Msa0486210:CDS
TTCCCACATGATATACGCCA+TGG 0.630616 3_4:-3979892 None:intergenic
GGATGCCCACAGGATGTGGA+AGG 0.631872 3_4:+3980114 Msa0486210:CDS
TGAAGCCCATACTTGGCCAA+TGG 0.633954 3_4:-3979659 None:intergenic
CAGTAACCCGGGGTACACCA+TGG 0.640478 3_4:+3979875 Msa0486210:CDS
CACCATGGCGTATATCATGT+GGG 0.640615 3_4:+3979890 Msa0486210:CDS
CCAGGATAACAATTCTGTGG+AGG 0.643821 3_4:+3979816 Msa0486210:CDS
GAATTCCTTCTGGGACTGGG+AGG 0.651260 3_4:-3974763 None:intergenic
GACAGTTTACAGCGATCAGG+GGG 0.651901 3_4:+3979286 Msa0486210:intron
TTGATCCAAGAAGCACAACA+TGG 0.661070 3_4:-3975078 None:intergenic
AGTGTAAAGTGCCATCCTGG+TGG 0.661255 3_4:-3975216 None:intergenic
TGTTTGATCCAGCGCCAATG+TGG 0.661880 3_4:+3979552 Msa0486210:intron
TGACAGTTTACAGCGATCAG+GGG 0.663002 3_4:+3979285 Msa0486210:intron
CCAATTCAATGGAACATGGG+TGG 0.663677 3_4:-3975122 None:intergenic
ACTGGAGATGGTAACAACCC+AGG 0.673226 3_4:-3977407 None:intergenic
AGGCAAACCTTGAAGACCTG+AGG 0.673854 3_4:-3975518 None:intergenic
ATCAGACCCATGAAACACAA+AGG 0.676250 3_4:+3975485 Msa0486210:CDS
CGGAACCATAATCAGCCAAG+AGG 0.679755 3_4:+3974802 Msa0486210:CDS
GAGGCACACCAGCAGCTCGG+CGG 0.681557 3_4:-3979708 None:intergenic
GGAGGTCATCCATTTGACGG+TGG 0.690604 3_4:+3979996 Msa0486210:CDS
AGCGAGGAGTTACTTGTACG+CGG 0.691268 3_4:+3979955 Msa0486210:CDS
GGGCTTCACTGTACACACGA+AGG 0.700939 3_4:+3979674 Msa0486210:CDS
AAAACTGGGTCAACTGACGG+TGG 0.704727 3_4:-3980033 None:intergenic
TGTCCAATTCAATGGAACAT+GGG 0.705425 3_4:-3975125 None:intergenic
CTGAAGCTAGAGTTTCACCA+AGG 0.723079 3_4:-3979855 None:intergenic
ACTCTAGCTTCAGTAACCCG+GGG 0.723178 3_4:+3979865 Msa0486210:CDS
CAACGTCAGATTAACACCAG+CGG 0.726780 3_4:-3977980 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTAGTTTTTGTATT+TGG - chr3_4:3977324-3977343 None:intergenic 10.0%
!! TAATAATAATGATTATGAGA+AGG + chr3_4:3975363-3975382 Msa0486210:CDS 15.0%
!! TAAATTATTACCTATAATGT+TGG + chr3_4:3975609-3975628 Msa0486210:CDS 15.0%
!! TATAAAAGAAAAACAATAGT+TGG - chr3_4:3975980-3975999 None:intergenic 15.0%
!! CTTCAAAAAAAAAAGTAATA+TGG + chr3_4:3976538-3976557 Msa0486210:intron 15.0%
!! AAAGAATAATTGCTAAATTT+GGG + chr3_4:3977208-3977227 Msa0486210:intron 15.0%
!! ATTATTCATTTCAATATTTC+TGG + chr3_4:3978132-3978151 Msa0486210:intron 15.0%
!!! TCTAGTTTTTTATTGTATAT+TGG + chr3_4:3978194-3978213 Msa0486210:intron 15.0%
!!! TTCAAGTATTCTTTTTATTT+TGG + chr3_4:3978985-3979004 Msa0486210:intron 15.0%
!!! AGAATTATTTTTAATTAAGC+TGG + chr3_4:3979148-3979167 Msa0486210:intron 15.0%
!! TTAAAATTTACATTTATGAC+TGG - chr3_4:3979209-3979228 None:intergenic 15.0%
!! AGTGAGTAAGTAATTATTAA+GGG - chr3_4:3974960-3974979 None:intergenic 20.0%
!! TAGTGAGTAAGTAATTATTA+AGG - chr3_4:3974961-3974980 None:intergenic 20.0%
!! ATTACATTACACTTAATTCA+TGG + chr3_4:3975679-3975698 Msa0486210:intron 20.0%
!!! ATTTTTACAAATTACAGTGA+TGG - chr3_4:3976245-3976264 None:intergenic 20.0%
!! TAAATCATCTTATGGTAAAA+TGG - chr3_4:3976798-3976817 None:intergenic 20.0%
!! AATGTATTGGAAATTGTAAT+AGG + chr3_4:3977175-3977194 Msa0486210:intron 20.0%
!! GAAAGAATAATTGCTAAATT+TGG + chr3_4:3977207-3977226 Msa0486210:intron 20.0%
!! CTATTTGGTTATTACTTTAA+GGG - chr3_4:3977272-3977291 None:intergenic 20.0%
!! TCTATTTGGTTATTACTTTA+AGG - chr3_4:3977273-3977292 None:intergenic 20.0%
!!! ATTAGTTTTTGTATTTGGAT+GGG - chr3_4:3977319-3977338 None:intergenic 20.0%
!!! TATTAGTTTTTGTATTTGGA+TGG - chr3_4:3977320-3977339 None:intergenic 20.0%
!! AAAAAATTGCTGATATTCAA+AGG + chr3_4:3977772-3977791 Msa0486210:CDS 20.0%
!! AATCAAAATAGTTTGAAGAA+AGG - chr3_4:3977879-3977898 None:intergenic 20.0%
!! TTGAATGACATGTAATAATT+AGG - chr3_4:3978616-3978635 None:intergenic 20.0%
!! TATTATTATTCTCTGTACTA+TGG + chr3_4:3978712-3978731 Msa0486210:intron 20.0%
!! ATTATTATTCTCTGTACTAT+GGG + chr3_4:3978713-3978732 Msa0486210:intron 20.0%
! ATAAAAGAGATATGATACCT+AGG - chr3_4:3974916-3974935 None:intergenic 25.0%
!! ATTAATGTCTTCTTTGTTGT+TGG - chr3_4:3975014-3975033 None:intergenic 25.0%
! CAATGATGAATTTGAATTCA+AGG - chr3_4:3975195-3975214 None:intergenic 25.0%
! TTCTGTTCATTGAAATTCAA+AGG - chr3_4:3975340-3975359 None:intergenic 25.0%
! TAATAATGATTATGAGAAGG+AGG + chr3_4:3975366-3975385 Msa0486210:CDS 25.0%
!! CATACATTTTCCAACATTAT+AGG - chr3_4:3975622-3975641 None:intergenic 25.0%
!!! CTAATTAGTGGTTTGTTATA+AGG - chr3_4:3975840-3975859 None:intergenic 25.0%
!! AGTGGTTAAAAGTTGTATTT+TGG + chr3_4:3976464-3976483 Msa0486210:intron 25.0%
! AAAAACCATATTTACTGAGA+AGG - chr3_4:3976498-3976517 None:intergenic 25.0%
!! AGTAAATATGGTTTTTGTTG+TGG + chr3_4:3976502-3976521 Msa0486210:intron 25.0%
!!! GTAAATATGGTTTTTGTTGT+GGG + chr3_4:3976503-3976522 Msa0486210:intron 25.0%
! TTGCATATAATCAATCTCTA+GGG + chr3_4:3976693-3976712 Msa0486210:intron 25.0%
! ACGAGAAATAAATCATCTTA+TGG - chr3_4:3976806-3976825 None:intergenic 25.0%
! TGAATAAACAGAACATTATC+CGG - chr3_4:3976883-3976902 None:intergenic 25.0%
! GTTTGAACATAGATTTGTAA+AGG + chr3_4:3976999-3977018 Msa0486210:intron 25.0%
!! ACATTCAAATTTAAAACTGC+AGG - chr3_4:3977031-3977050 None:intergenic 25.0%
! TAGCTAGTATCTTATCTATT+TGG - chr3_4:3977287-3977306 None:intergenic 25.0%
! AAATAGATAAGATACTAGCT+AGG + chr3_4:3977286-3977305 Msa0486210:intron 25.0%
! AATAGATAAGATACTAGCTA+GGG + chr3_4:3977287-3977306 Msa0486210:intron 25.0%
!!! TTAGTTTTTGTATTTGGATG+GGG - chr3_4:3977318-3977337 None:intergenic 25.0%
! AAAAATTCTTCACGTCATTA+TGG + chr3_4:3977340-3977359 Msa0486210:intron 25.0%
! GAATTTGAATTTATTGACCT+AGG + chr3_4:3977370-3977389 Msa0486210:intron 25.0%
! TTGTTAACAATGAGGATAAT+AGG - chr3_4:3977440-3977459 None:intergenic 25.0%
! CACAGTTCAAAATCATTAAT+TGG - chr3_4:3977671-3977690 None:intergenic 25.0%
! TATTTAAAGACAGACAATCA+TGG - chr3_4:3977843-3977862 None:intergenic 25.0%
!!! CTTTTGATGATAATATCTCT+GGG + chr3_4:3978046-3978065 Msa0486210:CDS 25.0%
!!! TTTTGATGATAATATCTCTG+GGG + chr3_4:3978047-3978066 Msa0486210:CDS 25.0%
! AAAATTCACCTTGTAAGTAT+AGG + chr3_4:3978362-3978381 Msa0486210:intron 25.0%
! TATTAGATTTCAGTTCAAGA+AGG - chr3_4:3978411-3978430 None:intergenic 25.0%
! TTAAAAAAGAATTCTTCAGC+TGG - chr3_4:3979038-3979057 None:intergenic 25.0%
! ATTATTTCAGTAAAACTCTG+AGG - chr3_4:3979084-3979103 None:intergenic 25.0%
! TAAAAATAATTCTTCAGCTG+AGG - chr3_4:3979141-3979160 None:intergenic 25.0%
! TAAAGACTTGAATATTTCAG+TGG - chr3_4:3979390-3979409 None:intergenic 25.0%
! TGAAATATTCAAGTCTTTAC+TGG + chr3_4:3979391-3979410 Msa0486210:intron 25.0%
! ATCAAAAGACATCATAACAT+TGG + chr3_4:3979499-3979518 Msa0486210:intron 25.0%
! ACATTTATATTGTTCAGACA+AGG + chr3_4:3980154-3980173 Msa0486210:CDS 25.0%
! TTAGATCACCAAGTTGAATT+CGG + chr3_4:3975052-3975071 Msa0486210:CDS 30.0%
!! GTTTTAATGACACAAAGATG+TGG - chr3_4:3975710-3975729 None:intergenic 30.0%
AGTCAAGAAAAGCTAATTAG+TGG - chr3_4:3975852-3975871 None:intergenic 30.0%
TAATAATGTTTGTGCAACCT+GGG - chr3_4:3975938-3975957 None:intergenic 30.0%
ATAATAATGTTTGTGCAACC+TGG - chr3_4:3975939-3975958 None:intergenic 30.0%
! AATAGTTGGACATTTGTTGA+AGG - chr3_4:3975966-3975985 None:intergenic 30.0%
ATAGTGTTCTCATTAGCAAT+AGG - chr3_4:3976052-3976071 None:intergenic 30.0%
TGATTCAAAGTGACATAATC+TGG - chr3_4:3976191-3976210 None:intergenic 30.0%
!! CTGGTTTTTACAGTTAAAGT+TGG + chr3_4:3976405-3976424 Msa0486210:intron 30.0%
!!! TTAAAAGTTGTATTTTGGCC+TGG + chr3_4:3976469-3976488 Msa0486210:intron 30.0%
CAACAATTGTAGACAAAAAC+AGG - chr3_4:3976574-3976593 None:intergenic 30.0%
CTAGAGATTGATTATATGCA+AGG - chr3_4:3976694-3976713 None:intergenic 30.0%
CTTGCATATAATCAATCTCT+AGG + chr3_4:3976692-3976711 Msa0486210:intron 30.0%
!! TATAATCAATCTCTAGGGTT+TGG + chr3_4:3976698-3976717 Msa0486210:intron 30.0%
TATCAGAAAATTAAGCAACC+CGG + chr3_4:3976861-3976880 Msa0486210:intron 30.0%
GAATAAACAGAACATTATCC+GGG - chr3_4:3976882-3976901 None:intergenic 30.0%
TAATTAAGAACATCAAGTCG+CGG - chr3_4:3977090-3977109 None:intergenic 30.0%
AAGTTGTGTGTTCAATGTAT+TGG + chr3_4:3977162-3977181 Msa0486210:intron 30.0%
ATTAATAAGTTTGATTGCGC+CGG + chr3_4:3977528-3977547 Msa0486210:intron 30.0%
ATACAACAATTGCTTATTGC+AGG + chr3_4:3977716-3977735 Msa0486210:intron 30.0%
CTGATATTCAAAGGCTTATT+GGG + chr3_4:3977781-3977800 Msa0486210:CDS 30.0%
!! GCTTTTGATGATAATATCTC+TGG + chr3_4:3978045-3978064 Msa0486210:CDS 30.0%
AGCCTATATAATAGAATCTC+TGG + chr3_4:3978227-3978246 Msa0486210:intron 30.0%
CACCAGAGATTCTATTATAT+AGG - chr3_4:3978232-3978251 None:intergenic 30.0%
TAGTACTACCTATACTTACA+AGG - chr3_4:3978373-3978392 None:intergenic 30.0%
AATAGAGTTATGTTCAGTTG+AGG - chr3_4:3978739-3978758 None:intergenic 30.0%
ACATAACTCTATTTGTGTCA+AGG + chr3_4:3978746-3978765 Msa0486210:intron 30.0%
CATAACTCTATTTGTGTCAA+GGG + chr3_4:3978747-3978766 Msa0486210:intron 30.0%
ATATCATGTGGGAAATTTGA+TGG + chr3_4:3979901-3979920 Msa0486210:CDS 30.0%
TATCATGTGGGAAATTTGAT+GGG + chr3_4:3979902-3979921 Msa0486210:CDS 30.0%
TTAGGATTCGAATTCCTTCT+GGG - chr3_4:3974775-3974794 None:intergenic 35.0%
ATTAGGATTCGAATTCCTTC+TGG - chr3_4:3974776-3974795 None:intergenic 35.0%
GAAGGAATTCGAATCCTAAT+CGG + chr3_4:3974776-3974795 Msa0486210:CDS 35.0%
ATTCGAATCCTAATCGGAAT+CGG + chr3_4:3974782-3974801 Msa0486210:CDS 35.0%
GAGGATGATGAAGATAATGA+TGG - chr3_4:3974841-3974860 None:intergenic 35.0%
AGAGATATGATACCTAGGTT+GGG - chr3_4:3974911-3974930 None:intergenic 35.0%
AAGAGATATGATACCTAGGT+TGG - chr3_4:3974912-3974931 None:intergenic 35.0%
TACTCGATTCATGTGGAAAA+AGG + chr3_4:3974981-3975000 Msa0486210:intron 35.0%
TGTCCAATTCAATGGAACAT+GGG - chr3_4:3975128-3975147 None:intergenic 35.0%
! ATTTTCAGACCATTGCCAAA+TGG + chr3_4:3975284-3975303 Msa0486210:CDS 35.0%
!! TGTTTTGTTCCATTTGGCAA+TGG - chr3_4:3975296-3975315 None:intergenic 35.0%
! TTTGTTATAAGGTACACGGT+GGG - chr3_4:3975829-3975848 None:intergenic 35.0%
!! GTGGTTTGTTATAAGGTACA+CGG - chr3_4:3975833-3975852 None:intergenic 35.0%
ATGATAGCACAGCTAAACAT+GGG - chr3_4:3975882-3975901 None:intergenic 35.0%
AATAATGTTTGTGCAACCTG+GGG - chr3_4:3975937-3975956 None:intergenic 35.0%
! GTTGCTATTGCTCTCATAAA+AGG + chr3_4:3976130-3976149 Msa0486210:intron 35.0%
ATTCCTATACACTCAACTTC+TGG + chr3_4:3976158-3976177 Msa0486210:intron 35.0%
CGTCTTTCTTCTTTGCATTA+TGG + chr3_4:3976215-3976234 Msa0486210:intron 35.0%
TGTAAAAATGTCTAGTCCTC+TGG + chr3_4:3976256-3976275 Msa0486210:intron 35.0%
!! GACCTAGTTCTTTTTCTTTG+TGG + chr3_4:3976361-3976380 Msa0486210:intron 35.0%
CTCCACAAAGAAAAAGAACT+AGG - chr3_4:3976366-3976385 None:intergenic 35.0%
!! CTAGTTCTTTTTCTTTGTGG+AGG + chr3_4:3976364-3976383 Msa0486210:intron 35.0%
!! GTTTTTGTTGTGGGCTAATT+TGG + chr3_4:3976512-3976531 Msa0486210:intron 35.0%
! TTTTATGTCCAACCGATGAA+GGG - chr3_4:3976609-3976628 None:intergenic 35.0%
! TTTTTATGTCCAACCGATGA+AGG - chr3_4:3976610-3976629 None:intergenic 35.0%
ATAAAAAACGCCTTCTTCCA+TGG + chr3_4:3976623-3976642 Msa0486210:intron 35.0%
GAACATTTGTAGAATCACCA+TGG - chr3_4:3976643-3976662 None:intergenic 35.0%
TCTACAAATGTTCACAAGCA+TGG + chr3_4:3976650-3976669 Msa0486210:intron 35.0%
TATGCAAGGATTTGTGAAGA+CGG - chr3_4:3976680-3976699 None:intergenic 35.0%
!!! ATAAAGGCATTTTACAGCAG+TGG - chr3_4:3977062-3977081 None:intergenic 35.0%
TCAAGTCGCGGAAAAAATAA+AGG - chr3_4:3977078-3977097 None:intergenic 35.0%
AGGAACAATTCTTTCAACCT+AGG - chr3_4:3977390-3977409 None:intergenic 35.0%
! TAGGTTGAAAGAATTGTTCC+TGG + chr3_4:3977389-3977408 Msa0486210:intron 35.0%
AGGTTGAAAGAATTGTTCCT+GGG + chr3_4:3977390-3977409 Msa0486210:intron 35.0%
CTCATTGTTAACAAAGCTGA+CGG + chr3_4:3977446-3977465 Msa0486210:CDS 35.0%
AAGACTTCTGTATACTCTCA+AGG - chr3_4:3977496-3977515 None:intergenic 35.0%
ACTTATCTCATCTAGGTGTT+AGG + chr3_4:3977609-3977628 Msa0486210:intron 35.0%
CTTATCTCATCTAGGTGTTA+GGG + chr3_4:3977610-3977629 Msa0486210:intron 35.0%
TAGAAATAAGACTTGCCTGT+CGG - chr3_4:3977637-3977656 None:intergenic 35.0%
CAATTGCTTATTGCAGGAAA+AGG + chr3_4:3977722-3977741 Msa0486210:intron 35.0%
GCTGATATTCAAAGGCTTAT+TGG + chr3_4:3977780-3977799 Msa0486210:CDS 35.0%
AAAGACAGACAATCATGGAT+GGG - chr3_4:3977838-3977857 None:intergenic 35.0%
TAAAGACAGACAATCATGGA+TGG - chr3_4:3977839-3977858 None:intergenic 35.0%
TAGAATCTCCAAATACAGTC+AGG + chr3_4:3978095-3978114 Msa0486210:CDS 35.0%
ATTACCTACCTGACTGTATT+TGG - chr3_4:3978106-3978125 None:intergenic 35.0%
TTCAGTTCAAGAAGGCTTAA+AGG - chr3_4:3978403-3978422 None:intergenic 35.0%
GTATGAGATTGTTCAGTTGA+GGG - chr3_4:3978451-3978470 None:intergenic 35.0%
AGTATGAGATTGTTCAGTTG+AGG - chr3_4:3978452-3978471 None:intergenic 35.0%
!! TCAACATTAGGAGTGTTGTT+AGG + chr3_4:3978537-3978556 Msa0486210:intron 35.0%
! AGGTTAGTGTTGTTATTGAG+TGG + chr3_4:3978557-3978576 Msa0486210:intron 35.0%
! GGTTAGTGTTGTTATTGAGT+GGG + chr3_4:3978558-3978577 Msa0486210:intron 35.0%
! GTTAGTGTTGTTATTGAGTG+GGG + chr3_4:3978559-3978578 Msa0486210:intron 35.0%
TCATCATTGTCTTCAGTTTC+TGG + chr3_4:3978852-3978871 Msa0486210:CDS 35.0%
!! TTGTCTTCAGTTTCTGGTAA+AGG + chr3_4:3978858-3978877 Msa0486210:CDS 35.0%
GATACCATGACATAGGTATT+CGG - chr3_4:3978902-3978921 None:intergenic 35.0%
TGAGATTGATACCATGACAT+AGG - chr3_4:3978909-3978928 None:intergenic 35.0%
! TCATTAGAACGATTGAGTTG+AGG - chr3_4:3978950-3978969 None:intergenic 35.0%
! TCTCATGCAATGTTGATTGT+TGG + chr3_4:3979176-3979195 Msa0486210:intron 35.0%
! AGTTTTACCATTTGGATCCA+TGG + chr3_4:3979340-3979359 Msa0486210:CDS 35.0%
CAAGATAGAAACAGCAAAAC+TGG + chr3_4:3979415-3979434 Msa0486210:intron 35.0%
ATAGAAACAGCAAAACTGGA+GGG + chr3_4:3979419-3979438 Msa0486210:intron 35.0%
AAGAAATCAATTCCTGGAGT+TGG - chr3_4:3979469-3979488 None:intergenic 35.0%
!! GATGTCTTTTGATAGCTTCA+GGG - chr3_4:3979492-3979511 None:intergenic 35.0%
!! TGATGTCTTTTGATAGCTTC+AGG - chr3_4:3979493-3979512 None:intergenic 35.0%
ACAATCAATTGTGCATTGCT+TGG - chr3_4:3979535-3979554 None:intergenic 35.0%
ATCTGCAAAGACTGTTTGAT+TGG - chr3_4:3979638-3979657 None:intergenic 35.0%
TGCAGTACAAATGATAGATC+TGG - chr3_4:3979778-3979797 None:intergenic 35.0%
AATTGTTATCCTGGTCAGTT+GGG - chr3_4:3979810-3979829 None:intergenic 35.0%
! TTTTTCCTCGAGAGAAAGTT+CGG + chr3_4:3980093-3980112 Msa0486210:CDS 35.0%
TTATGGTTCCGATTCCGATT+AGG - chr3_4:3974793-3974812 None:intergenic 40.0%
TGAATCCTCTTGGCTGATTA+TGG - chr3_4:3974810-3974829 None:intergenic 40.0%
GGAAGAAGAATGAATCCTCT+TGG - chr3_4:3974820-3974839 None:intergenic 40.0%
! ATGATACCTAGGTTGGGTTT+GGG - chr3_4:3974905-3974924 None:intergenic 40.0%
! TATGATACCTAGGTTGGGTT+TGG - chr3_4:3974906-3974925 None:intergenic 40.0%
CTCACTATACTCGATTCATG+TGG + chr3_4:3974974-3974993 Msa0486210:intron 40.0%
! TTGATCCAAGAAGCACAACA+TGG - chr3_4:3975081-3975100 None:intergenic 40.0%
TCTTGGATCAACCAAACAGT+TGG + chr3_4:3975090-3975109 Msa0486210:CDS 40.0%
CTTGGATCAACCAAACAGTT+GGG + chr3_4:3975091-3975110 Msa0486210:CDS 40.0%
GTGTCCAATTCAATGGAACA+TGG - chr3_4:3975129-3975148 None:intergenic 40.0%
!! CCATTTGGTGTCCAATTCAA+TGG - chr3_4:3975136-3975155 None:intergenic 40.0%
CCATTGAATTGGACACCAAA+TGG + chr3_4:3975133-3975152 Msa0486210:CDS 40.0%
TGAATTGGACACCAAATGGT+TGG + chr3_4:3975137-3975156 Msa0486210:CDS 40.0%
GAATTGGACACCAAATGGTT+GGG + chr3_4:3975138-3975157 Msa0486210:CDS 40.0%
TTTGAATTCAAGGTGATCGC+CGG - chr3_4:3975185-3975204 None:intergenic 40.0%
CAAATTCATCATTGTCCACC+AGG + chr3_4:3975201-3975220 Msa0486210:CDS 40.0%
GTATTAAACTTGCCCAATGC+TGG + chr3_4:3975259-3975278 Msa0486210:CDS 40.0%
GTCTGAAAATGACCAGCATT+GGG - chr3_4:3975274-3975293 None:intergenic 40.0%
!! CTGGTGTGTTTTGTTCCATT+TGG - chr3_4:3975302-3975321 None:intergenic 40.0%
GAACAAAACACACCAGACTA+TGG + chr3_4:3975306-3975325 Msa0486210:CDS 40.0%
AAGGAAGTAACTCCATAGTC+TGG - chr3_4:3975321-3975340 None:intergenic 40.0%
TTTGTGTTTCATGGGTCTGA+TGG - chr3_4:3975486-3975505 None:intergenic 40.0%
ATCAGACCCATGAAACACAA+AGG + chr3_4:3975485-3975504 Msa0486210:CDS 40.0%
CCAAGTCCTTTGTGTTTCAT+GGG - chr3_4:3975494-3975513 None:intergenic 40.0%
CCATGAAACACAAAGGACTT+GGG + chr3_4:3975492-3975511 Msa0486210:CDS 40.0%
! TTGCCTCTCAAGTTTGTTCA+AGG + chr3_4:3975535-3975554 Msa0486210:CDS 40.0%
! TGCCTCTCAAGTTTGTTCAA+GGG + chr3_4:3975536-3975555 Msa0486210:CDS 40.0%
TTGTTATAAGGTACACGGTG+GGG - chr3_4:3975828-3975847 None:intergenic 40.0%
!! GTTTGTTATAAGGTACACGG+TGG - chr3_4:3975830-3975849 None:intergenic 40.0%
CATGATAGCACAGCTAAACA+TGG - chr3_4:3975883-3975902 None:intergenic 40.0%
GAGATGCAAAAGCAATGTGT+AGG - chr3_4:3975911-3975930 None:intergenic 40.0%
GTTCTCATTAGCAATAGGAG+AGG - chr3_4:3976047-3976066 None:intergenic 40.0%
CTAGACTCAACTAGCAATGT+TGG - chr3_4:3976109-3976128 None:intergenic 40.0%
AAGCCAGAAGTTGAGTGTAT+AGG - chr3_4:3976164-3976183 None:intergenic 40.0%
GATTGTAGTTAGCTGACAAC+TGG + chr3_4:3976386-3976405 Msa0486210:intron 40.0%
!! ACAGTTAAAGTTGGCCTTCA+TGG + chr3_4:3976414-3976433 Msa0486210:intron 40.0%
!! TATTTACTGAGAAGGTGTCC+AGG - chr3_4:3976490-3976509 None:intergenic 40.0%
GGACACCTTCTCAGTAAATA+TGG + chr3_4:3976490-3976509 Msa0486210:intron 40.0%
TTTATGTCCAACCGATGAAG+GGG - chr3_4:3976608-3976627 None:intergenic 40.0%
TGTAGAATCACCATGGAAGA+AGG - chr3_4:3976636-3976655 None:intergenic 40.0%
GACATTGTAGTCAGTAGTAC+TGG + chr3_4:3976836-3976855 Msa0486210:intron 40.0%
!! CGTCAGCTTTGTTAACAATG+AGG - chr3_4:3977448-3977467 None:intergenic 40.0%
TTGCCTCACTTATCTCATCT+AGG + chr3_4:3977602-3977621 Msa0486210:intron 40.0%
ACACCTAGATGAGATAAGTG+AGG - chr3_4:3977608-3977627 None:intergenic 40.0%
AGAAATAAGACTTGCCTGTC+GGG - chr3_4:3977636-3977655 None:intergenic 40.0%
GAAAAGTTGGAAAGCAGGAA+AGG - chr3_4:3977944-3977963 None:intergenic 40.0%
! TTCCTGCTTTCCAACTTTTC+AGG + chr3_4:3977944-3977963 Msa0486210:intron 40.0%
AACCTGAAAAGTTGGAAAGC+AGG - chr3_4:3977949-3977968 None:intergenic 40.0%
!!! TGCTTTCCAACTTTTCAGGT+TGG + chr3_4:3977948-3977967 Msa0486210:intron 40.0%
ATGCTTCCAACCTGAAAAGT+TGG - chr3_4:3977957-3977976 None:intergenic 40.0%
CAACAGAAGAATTGCCATCA+AGG - chr3_4:3978020-3978039 None:intergenic 40.0%
ATCTCCAAATACAGTCAGGT+AGG + chr3_4:3978099-3978118 Msa0486210:intron 40.0%
GTTGAATGAGAGAAAACGAG+AGG - chr3_4:3978283-3978302 None:intergenic 40.0%
CATAAGATGAGGCATGGATA+AGG - chr3_4:3978478-3978497 None:intergenic 40.0%
GAACTAAAGAGAACAGGGAA+TGG - chr3_4:3978510-3978529 None:intergenic 40.0%
CCTAGGAACTAAAGAGAACA+GGG - chr3_4:3978515-3978534 None:intergenic 40.0%
ACCTAGGAACTAAAGAGAAC+AGG - chr3_4:3978516-3978535 None:intergenic 40.0%
AGTTCCTAGGTGTCAACATT+AGG + chr3_4:3978525-3978544 Msa0486210:intron 40.0%
ATTAGGTCAAGTACAAGTGC+AGG - chr3_4:3978599-3978618 None:intergenic 40.0%
TGGTATCAATCTCACAGACT+TGG + chr3_4:3978915-3978934 Msa0486210:intron 40.0%
AATGACAGTTTACAGCGATC+AGG + chr3_4:3979283-3979302 Msa0486210:intron 40.0%
ATGACAGTTTACAGCGATCA+GGG + chr3_4:3979284-3979303 Msa0486210:intron 40.0%
ACCATTTGGATCCATGGAAT+TGG + chr3_4:3979346-3979365 Msa0486210:CDS 40.0%
TCCAATTCCATGGATCCAAA+TGG - chr3_4:3979350-3979369 None:intergenic 40.0%
GATAGAAACAGCAAAACTGG+AGG + chr3_4:3979418-3979437 Msa0486210:intron 40.0%
AAATCAATTCCTGGAGTTGG+TGG - chr3_4:3979466-3979485 None:intergenic 40.0%
TCAGGGAAGAAATCAATTCC+TGG - chr3_4:3979475-3979494 None:intergenic 40.0%
TGATTGGAAGGACTCACATT+GGG - chr3_4:3979622-3979641 None:intergenic 40.0%
TTGATTGGAAGGACTCACAT+TGG - chr3_4:3979623-3979642 None:intergenic 40.0%
GCAAAGACTGTTTGATTGGA+AGG - chr3_4:3979634-3979653 None:intergenic 40.0%
!! GATCTGGTGAAAGCATTTCT+TGG - chr3_4:3979762-3979781 None:intergenic 40.0%
GAATTGTTATCCTGGTCAGT+TGG - chr3_4:3979811-3979830 None:intergenic 40.0%
TGACCAGGATAACAATTCTG+TGG + chr3_4:3979813-3979832 Msa0486210:CDS 40.0%
! AAACTCTAGCTTCAGTAACC+CGG + chr3_4:3979863-3979882 Msa0486210:CDS 40.0%
GGAAAAACCAAACTGCACAA+AGG - chr3_4:3980080-3980099 None:intergenic 40.0%
!! TTCGAATTCCTTCTGGGACT+GGG - chr3_4:3974769-3974788 None:intergenic 45.0%
!! ATTCGAATTCCTTCTGGGAC+TGG - chr3_4:3974770-3974789 None:intergenic 45.0%
CATGGTCACCGAATTCAACT+TGG - chr3_4:3975063-3975082 None:intergenic 45.0%
CCAATTCAATGGAACATGGG+TGG - chr3_4:3975125-3975144 None:intergenic 45.0%
CCACCCATGTTCCATTGAAT+TGG + chr3_4:3975122-3975141 Msa0486210:CDS 45.0%
AAGTCGCATACCCAACCATT+TGG - chr3_4:3975151-3975170 None:intergenic 45.0%
TTCATCATTGTCCACCAGGA+TGG + chr3_4:3975205-3975224 Msa0486210:CDS 45.0%
GGTCTGAAAATGACCAGCAT+TGG - chr3_4:3975275-3975294 None:intergenic 45.0%
CACTCTCCTACAAAAGGACT+CGG - chr3_4:3975427-3975446 None:intergenic 45.0%
CCCATGAAACACAAAGGACT+TGG + chr3_4:3975491-3975510 Msa0486210:CDS 45.0%
CCCAAGTCCTTTGTGTTTCA+TGG - chr3_4:3975495-3975514 None:intergenic 45.0%
! GCCTCTCAAGTTTGTTCAAG+GGG + chr3_4:3975537-3975556 Msa0486210:CDS 45.0%
TCCCCTTGAACAAACTTGAG+AGG - chr3_4:3975541-3975560 None:intergenic 45.0%
ATCAAAGCGCAAGGAATTGG+TGG + chr3_4:3975560-3975579 Msa0486210:CDS 45.0%
GACCCTCATTTGTTCATACC+CGG + chr3_4:3975799-3975818 Msa0486210:intron 45.0%
TGCCGGGTATGAACAAATGA+GGG - chr3_4:3975804-3975823 None:intergenic 45.0%
ATTAGCAATAGGAGAGGAGG+TGG - chr3_4:3976041-3976060 None:intergenic 45.0%
CTCATTAGCAATAGGAGAGG+AGG - chr3_4:3976044-3976063 None:intergenic 45.0%
TCAACTAGCAATGTTGGAGC+TGG - chr3_4:3976103-3976122 None:intergenic 45.0%
GGCATGAATGCAACTAATCG+TGG - chr3_4:3976321-3976340 None:intergenic 45.0%
! CATTCATGCCTTTTGAGCAG+CGG + chr3_4:3976331-3976350 Msa0486210:intron 45.0%
GGCAGTCAATCTTTCCATGA+AGG - chr3_4:3976431-3976450 None:intergenic 45.0%
TGGAAAGATTGACTGCCTCA+AGG + chr3_4:3976434-3976453 Msa0486210:intron 45.0%
TTTGCCATTGACCCCTTCAT+CGG + chr3_4:3976594-3976613 Msa0486210:intron 45.0%
TTGTTACCATCTCCAGTGGA+AGG + chr3_4:3977413-3977432 Msa0486210:CDS 45.0%
AGGATAATAGGACCTTCCAC+TGG - chr3_4:3977428-3977447 None:intergenic 45.0%
GGCTTATTGGGTCATGTGTA+AGG + chr3_4:3977793-3977812 Msa0486210:CDS 45.0%
GAAAGCAGGAAAGGTGAACA+TGG - chr3_4:3977935-3977954 None:intergenic 45.0%
CAACGTCAGATTAACACCAG+CGG - chr3_4:3977983-3978002 None:intergenic 45.0%
TCCTCTTCAGTTGACCTTGA+TGG + chr3_4:3978003-3978022 Msa0486210:CDS 45.0%
ATTCTACCAGCAGAGAAAGC+AGG - chr3_4:3978081-3978100 None:intergenic 45.0%
! GAGAGAAAACGAGAGGCATA+CGG - chr3_4:3978276-3978295 None:intergenic 45.0%
! CCCTGTTCTCTTTAGTTCCT+AGG + chr3_4:3978512-3978531 Msa0486210:intron 45.0%
CACTCCTAATGTTGACACCT+AGG - chr3_4:3978532-3978551 None:intergenic 45.0%
TGTGCCGAATACCTATGTCA+TGG + chr3_4:3978895-3978914 Msa0486210:intron 45.0%
TGACAGTTTACAGCGATCAG+GGG + chr3_4:3979285-3979304 Msa0486210:intron 45.0%
!! CTTCCTTTCAGGTTCCTTCT+GGG + chr3_4:3979315-3979334 Msa0486210:CDS 45.0%
!! TTCCTTTCAGGTTCCTTCTG+GGG + chr3_4:3979316-3979335 Msa0486210:CDS 45.0%
AATGGTAAAACTGCCCCAGA+AGG - chr3_4:3979332-3979351 None:intergenic 45.0%
!! TCTGGGGCAGTTTTACCATT+TGG + chr3_4:3979332-3979351 Msa0486210:CDS 45.0%
! CTTCTCTAGCTCCAATTCCA+TGG - chr3_4:3979360-3979379 None:intergenic 45.0%
ACAGTCTTTGCAGATGCCAT+TGG + chr3_4:3979643-3979662 Msa0486210:CDS 45.0%
AGATGCCATTGGCCAAGTAT+GGG + chr3_4:3979654-3979673 Msa0486210:CDS 45.0%
TGTACAGTGAAGCCCATACT+TGG - chr3_4:3979669-3979688 None:intergenic 45.0%
CCTCCACAGAATTGTTATCC+TGG - chr3_4:3979819-3979838 None:intergenic 45.0%
CCAGGATAACAATTCTGTGG+AGG + chr3_4:3979816-3979835 Msa0486210:CDS 45.0%
CTGAAGCTAGAGTTTCACCA+AGG - chr3_4:3979858-3979877 None:intergenic 45.0%
! AACTCTAGCTTCAGTAACCC+GGG + chr3_4:3979864-3979883 Msa0486210:CDS 45.0%
ACACCATGGCGTATATCATG+TGG + chr3_4:3979889-3979908 Msa0486210:CDS 45.0%
CACCATGGCGTATATCATGT+GGG + chr3_4:3979890-3979909 Msa0486210:CDS 45.0%
TTCCCACATGATATACGCCA+TGG - chr3_4:3979895-3979914 None:intergenic 45.0%
TGCTGTAATCCACCGTCAAA+TGG - chr3_4:3980008-3980027 None:intergenic 45.0%
CAAGTTGTCGACGGAAAACT+GGG - chr3_4:3980050-3980069 None:intergenic 45.0%
GATGTGGAAGGATGTCTTGT+TGG + chr3_4:3980126-3980145 Msa0486210:CDS 45.0%
!!! ATGAATTATAAATTTTATAT+CGG - chr3_4:3976937-3976956 None:intergenic 5.0%
CGGAACCATAATCAGCCAAG+AGG + chr3_4:3974802-3974821 Msa0486210:CDS 50.0%
! ATACCTAGGTTGGGTTTGGG+TGG - chr3_4:3974902-3974921 None:intergenic 50.0%
GGTGACCATGTTGTGCTTCT+TGG + chr3_4:3975073-3975092 Msa0486210:CDS 50.0%
TGCGACTTCCATTTCAACGC+CGG + chr3_4:3975163-3975182 Msa0486210:CDS 50.0%
! AGTGTAAAGTGCCATCCTGG+TGG - chr3_4:3975219-3975238 None:intergenic 50.0%
ACCAGGATGGCACTTTACAC+TGG + chr3_4:3975218-3975237 Msa0486210:CDS 50.0%
CCAGGATGGCACTTTACACT+GGG + chr3_4:3975219-3975238 Msa0486210:CDS 50.0%
GGCACTTTACACTGGGAATC+TGG + chr3_4:3975226-3975245 Msa0486210:CDS 50.0%
CTCCTCTTTCAGATGCAGCA+GGG + chr3_4:3975401-3975420 Msa0486210:CDS 50.0%
! CGAGTCCTTTTGTAGGAGAG+TGG + chr3_4:3975425-3975444 Msa0486210:CDS 50.0%
CCTTGCCACTCTCCTACAAA+AGG - chr3_4:3975433-3975452 None:intergenic 50.0%
! CCTTTTGTAGGAGAGTGGCA+AGG + chr3_4:3975430-3975449 Msa0486210:CDS 50.0%
TTCATGGGTCTGATGGTCGT+TGG - chr3_4:3975479-3975498 None:intergenic 50.0%
CAAAGGACTTGGGATACCTC+AGG + chr3_4:3975502-3975521 Msa0486210:CDS 50.0%
TGGGATACCTCAGGTCTTCA+AGG + chr3_4:3975511-3975530 Msa0486210:CDS 50.0%
AGGCAAACCTTGAAGACCTG+AGG - chr3_4:3975521-3975540 None:intergenic 50.0%
TTCAAGGGGATCAAAGCGCA+AGG + chr3_4:3975551-3975570 Msa0486210:CDS 50.0%
GGGATCAAAGCGCAAGGAAT+TGG + chr3_4:3975557-3975576 Msa0486210:CDS 50.0%
CGCAAGGAATTGGTGGAGAA+AGG + chr3_4:3975567-3975586 Msa0486210:CDS 50.0%
CTGCCGGGTATGAACAAATG+AGG - chr3_4:3975805-3975824 None:intergenic 50.0%
GTAGCCTCCACCATTACCTT+TGG + chr3_4:3976013-3976032 Msa0486210:intron 50.0%
!! GTTGGAGCTGGTGATGGAAT+TGG - chr3_4:3976091-3976110 None:intergenic 50.0%
AGCAATGTTGGAGCTGGTGA+TGG - chr3_4:3976097-3976116 None:intergenic 50.0%
TCTAGTCCTCTGGCTACAAG+CGG + chr3_4:3976266-3976285 Msa0486210:intron 50.0%
AGCGGCACATTATCCCATCA+TGG + chr3_4:3976284-3976303 Msa0486210:intron 50.0%
GCGGCACATTATCCCATCAT+GGG + chr3_4:3976285-3976304 Msa0486210:intron 50.0%
GCACATTATCCCATCATGGG+TGG + chr3_4:3976288-3976307 Msa0486210:intron 50.0%
TAACCACTAGACGAGCCTTG+AGG - chr3_4:3976452-3976471 None:intergenic 50.0%
!! GGGTTCCTTAAAGAGTGTCC+CGG + chr3_4:3977228-3977247 Msa0486210:intron 50.0%
!! GGTTCCTTAAAGAGTGTCCC+GGG + chr3_4:3977229-3977248 Msa0486210:intron 50.0%
!! GTTCCTTAAAGAGTGTCCCG+GGG + chr3_4:3977230-3977249 Msa0486210:intron 50.0%
!! TTCCTTAAAGAGTGTCCCGG+GGG + chr3_4:3977231-3977250 Msa0486210:intron 50.0%
ACTGGAGATGGTAACAACCC+AGG - chr3_4:3977410-3977429 None:intergenic 50.0%
TGGGTTGTTACCATCTCCAG+TGG + chr3_4:3977409-3977428 Msa0486210:CDS 50.0%
ATAGGACCTTCCACTGGAGA+TGG - chr3_4:3977422-3977441 None:intergenic 50.0%
CAAAGCTGACGGTGATGAAG+AGG + chr3_4:3977457-3977476 Msa0486210:CDS 50.0%
! ATAAGTTTGATTGCGCCGGC+AGG + chr3_4:3977532-3977551 Msa0486210:intron 50.0%
GCCATCAAGGTCAACTGAAG+AGG - chr3_4:3978007-3978026 None:intergenic 50.0%
GATGTTCCTGCTTTCTCTGC+TGG + chr3_4:3978072-3978091 Msa0486210:CDS 50.0%
AGAACAGGGAATGGTGACTG+GGG - chr3_4:3978501-3978520 None:intergenic 50.0%
GAGAACAGGGAATGGTGACT+GGG - chr3_4:3978502-3978521 None:intergenic 50.0%
AGAGAACAGGGAATGGTGAC+TGG - chr3_4:3978503-3978522 None:intergenic 50.0%
GAAGTCTGTGTCTCAGCATC+AGG - chr3_4:3978801-3978820 None:intergenic 50.0%
GATGCTGAGACACAGACTTC+CGG + chr3_4:3978801-3978820 Msa0486210:CDS 50.0%
GACAGTTTACAGCGATCAGG+GGG + chr3_4:3979286-3979305 Msa0486210:intron 50.0%
GAAGGAACCTGAAAGGAAGC+AGG - chr3_4:3979314-3979333 None:intergenic 50.0%
!! GCTTCCTTTCAGGTTCCTTC+TGG + chr3_4:3979314-3979333 Msa0486210:CDS 50.0%
GAAACAGCAAAACTGGAGGG+TGG + chr3_4:3979422-3979441 Msa0486210:intron 50.0%
TGTTTGATCCAGCGCCAATG+TGG + chr3_4:3979552-3979571 Msa0486210:intron 50.0%
CAGATGCCATTGGCCAAGTA+TGG + chr3_4:3979653-3979672 Msa0486210:CDS 50.0%
TGAAGCCCATACTTGGCCAA+TGG - chr3_4:3979662-3979681 None:intergenic 50.0%
GGCTTCACTGTACACACGAA+GGG + chr3_4:3979675-3979694 Msa0486210:CDS 50.0%
GCCTCAGAAGGAAGCTTCAA+TGG + chr3_4:3979726-3979745 Msa0486210:CDS 50.0%
GCCATTGAAGCTTCCTTCTG+AGG - chr3_4:3979730-3979749 None:intergenic 50.0%
TACTATGAGCCCAACTGACC+AGG + chr3_4:3979798-3979817 Msa0486210:CDS 50.0%
! ACTCTAGCTTCAGTAACCCG+GGG + chr3_4:3979865-3979884 Msa0486210:CDS 50.0%
ATATACGCCATGGTGTACCC+CGG - chr3_4:3979885-3979904 None:intergenic 50.0%
!! TGATGGGCTTGTGCAAACAC+TGG + chr3_4:3979918-3979937 Msa0486210:CDS 50.0%
! GGCTTTTGCAAACTTCAGCG+AGG + chr3_4:3979939-3979958 Msa0486210:CDS 50.0%
AGCGAGGAGTTACTTGTACG+CGG + chr3_4:3979955-3979974 Msa0486210:CDS 50.0%
AGTTACTTGTACGCGGTGCA+GGG + chr3_4:3979962-3979981 Msa0486210:CDS 50.0%
TGGGGAGGTCATCCATTTGA+CGG + chr3_4:3979993-3980012 Msa0486210:CDS 50.0%
AAAACTGGGTCAACTGACGG+TGG - chr3_4:3980036-3980055 None:intergenic 50.0%
CGGAAAACTGGGTCAACTGA+CGG - chr3_4:3980039-3980058 None:intergenic 50.0%
CCAAGTTGTCGACGGAAAAC+TGG - chr3_4:3980051-3980070 None:intergenic 50.0%
! CCAGTTTTCCGTCGACAACT+TGG + chr3_4:3980048-3980067 Msa0486210:CDS 50.0%
GTCAACGCCTTTGTGCAGTT+TGG + chr3_4:3980070-3980089 Msa0486210:CDS 50.0%
GACATCCTTCCACATCCTGT+GGG - chr3_4:3980122-3980141 None:intergenic 50.0%
AGACATCCTTCCACATCCTG+TGG - chr3_4:3980123-3980142 None:intergenic 50.0%
GGGACTGGGAGGATGAATGA+TGG - chr3_4:3974755-3974774 None:intergenic 55.0%
TTCATCCTCCCAGTCCCAGA+AGG + chr3_4:3974758-3974777 Msa0486210:CDS 55.0%
!! GAATTCCTTCTGGGACTGGG+AGG - chr3_4:3974766-3974785 None:intergenic 55.0%
CATCCATCACCGTCTCGTGT+CGG + chr3_4:3974861-3974880 Msa0486210:CDS 55.0%
AAACCGACACGAGACGGTGA+TGG - chr3_4:3974867-3974886 None:intergenic 55.0%
AGGCAGAAACCGACACGAGA+CGG - chr3_4:3974873-3974892 None:intergenic 55.0%
TTGGGTTTGGGTGGAAGAGG+AGG - chr3_4:3974893-3974912 None:intergenic 55.0%
AGGTTGGGTTTGGGTGGAAG+AGG - chr3_4:3974896-3974915 None:intergenic 55.0%
CTTCCACCCAAACCCAACCT+AGG + chr3_4:3974896-3974915 Msa0486210:CDS 55.0%
CAACCAAACAGTTGGGCTCC+TGG + chr3_4:3975098-3975117 Msa0486210:CDS 55.0%
CAATGGAACATGGGTGGTCC+AGG - chr3_4:3975119-3975138 None:intergenic 55.0%
! CCCAGTGTAAAGTGCCATCC+TGG - chr3_4:3975222-3975241 None:intergenic 55.0%
GCTCCTCTTTCAGATGCAGC+AGG + chr3_4:3975400-3975419 Msa0486210:CDS 55.0%
! GCTTTTGCATCTCAGTCCCC+AGG + chr3_4:3975918-3975937 Msa0486210:intron 55.0%
! GGCTCCAAAGGTAATGGTGG+AGG - chr3_4:3976020-3976039 None:intergenic 55.0%
! GGTGGCTCCAAAGGTAATGG+TGG - chr3_4:3976023-3976042 None:intergenic 55.0%
GGAGGTGGCTCCAAAGGTAA+TGG - chr3_4:3976026-3976045 None:intergenic 55.0%
!! AATGTGCCGCTTGTAGCCAG+AGG - chr3_4:3976275-3976294 None:intergenic 55.0%
!! GGCTAGTCTCCACCCATGAT+GGG - chr3_4:3976300-3976319 None:intergenic 55.0%
!! TGGCTAGTCTCCACCCATGA+TGG - chr3_4:3976301-3976320 None:intergenic 55.0%
CTTGCATGCCGCTGCTCAAA+AGG - chr3_4:3976342-3976361 None:intergenic 55.0%
CCAACCGATGAAGGGGTCAA+TGG - chr3_4:3976601-3976620 None:intergenic 55.0%
CCATTGACCCCTTCATCGGT+TGG + chr3_4:3976598-3976617 Msa0486210:intron 55.0%
TCTTGTTAACGAGTGCCCCC+GGG - chr3_4:3977249-3977268 None:intergenic 55.0%
! GTCTTGTTAACGAGTGCCCC+CGG - chr3_4:3977250-3977269 None:intergenic 55.0%
AGCTGCTGGGAGGAACATAG+TGG + chr3_4:3977559-3977578 Msa0486210:intron 55.0%
GCTGCTGGGAGGAACATAGT+GGG + chr3_4:3977560-3977579 Msa0486210:intron 55.0%
CTGGGGCATAAGATGAGGCA+TGG - chr3_4:3978484-3978503 None:intergenic 55.0%
GGTGACTGGGGCATAAGATG+AGG - chr3_4:3978489-3978508 None:intergenic 55.0%
GACACAGACTTCCGGTGCAA+AGG + chr3_4:3978809-3978828 Msa0486210:CDS 55.0%
ACAGACTTCCGGTGCAAAGG+CGG + chr3_4:3978812-3978831 Msa0486210:CDS 55.0%
TGCCCCAGAAGGAACCTGAA+AGG - chr3_4:3979321-3979340 None:intergenic 55.0%
CTGGAGGGTGGTGAACTTGA+TGG + chr3_4:3979434-3979453 Msa0486210:intron 55.0%
TGGTCTATGCCACCAACTCC+AGG + chr3_4:3979454-3979473 Msa0486210:intron 55.0%
TTGATCCAGCGCCAATGTGG+AGG + chr3_4:3979555-3979574 Msa0486210:intron 55.0%
TCCAGCCAAGTCCTCCACAT+TGG - chr3_4:3979569-3979588 None:intergenic 55.0%
TTGGCTGGAATGTCAGCAGC+TGG + chr3_4:3979580-3979599 Msa0486210:CDS 55.0%
GGGCTTCACTGTACACACGA+AGG + chr3_4:3979674-3979693 Msa0486210:CDS 55.0%
GTGGAGGCTGAGATTGCTTC+TGG + chr3_4:3979832-3979851 Msa0486210:CDS 55.0%
GCTGAGATTGCTTCTGGCCT+TGG + chr3_4:3979838-3979857 Msa0486210:CDS 55.0%
TATACGCCATGGTGTACCCC+GGG - chr3_4:3979884-3979903 None:intergenic 55.0%
GAGTTACTTGTACGCGGTGC+AGG + chr3_4:3979961-3979980 Msa0486210:CDS 55.0%
GGAGGTCATCCATTTGACGG+TGG + chr3_4:3979996-3980015 Msa0486210:CDS 55.0%
!! GGCGTTGACCAAGTTGTCGA+CGG - chr3_4:3980059-3980078 None:intergenic 55.0%
GGCATCCGAACTTTCTCTCG+AGG - chr3_4:3980101-3980120 None:intergenic 55.0%
GAGAAAGTTCGGATGCCCAC+AGG + chr3_4:3980104-3980123 Msa0486210:CDS 55.0%
!! CACGAGACGGTGATGGATGG+AGG - chr3_4:3974860-3974879 None:intergenic 60.0%
!! CGACACGAGACGGTGATGGA+TGG - chr3_4:3974863-3974882 None:intergenic 60.0%
GGTCCAGGAGCCCAACTGTT+TGG - chr3_4:3975104-3975123 None:intergenic 60.0%
! GGTGATCGCCGGCGTTGAAA+TGG - chr3_4:3975174-3975193 None:intergenic 60.0%
GGCCCTGCTGCATCTGAAAG+AGG - chr3_4:3975406-3975425 None:intergenic 60.0%
! GCAGGGCCGAGTCCTTTTGT+AGG + chr3_4:3975418-3975437 Msa0486210:CDS 60.0%
AGGAGAGGAGGTGGCTCCAA+AGG - chr3_4:3976032-3976051 None:intergenic 60.0%
CTGCCTCAAGGCTCGTCTAG+TGG + chr3_4:3976446-3976465 Msa0486210:intron 60.0%
TGCCCCCGGGACACTCTTTA+AGG - chr3_4:3977236-3977255 None:intergenic 60.0%
TCCCAGCAGCTGTTACCTGC+CGG - chr3_4:3977550-3977569 None:intergenic 60.0%
TCTAGGTGTTAGGGCCCGAC+AGG + chr3_4:3977619-3977638 Msa0486210:intron 60.0%
!! AGGTTGGAAGCATCTGCCGC+TGG + chr3_4:3977964-3977983 Msa0486210:intron 60.0%
ACATGCAGCCGCCTTTGCAC+CGG - chr3_4:3978823-3978842 None:intergenic 60.0%
CAAGTCCTCCACATTGGCGC+TGG - chr3_4:3979563-3979582 None:intergenic 60.0%
CAGCGCCAATGTGGAGGACT+TGG + chr3_4:3979561-3979580 Msa0486210:intron 60.0%
GCCAATGTGGAGGACTTGGC+TGG + chr3_4:3979565-3979584 Msa0486210:CDS 60.0%
! TCTGAGGCACACCAGCAGCT+CGG - chr3_4:3979714-3979733 None:intergenic 60.0%
AGCTGCTGGTGTGCCTCAGA+AGG + chr3_4:3979714-3979733 Msa0486210:CDS 60.0%
CAGTAACCCGGGGTACACCA+TGG + chr3_4:3979875-3979894 Msa0486210:CDS 60.0%
GTTCGGATGCCCACAGGATG+TGG + chr3_4:3980110-3980129 Msa0486210:CDS 60.0%
GGATGCCCACAGGATGTGGA+AGG + chr3_4:3980114-3980133 Msa0486210:CDS 60.0%
AAGGTACACGGTGGGGCTGC+CGG - chr3_4:3975821-3975840 None:intergenic 65.0%
GCCGGCAGGTAACAGCTGCT+GGG + chr3_4:3977546-3977565 Msa0486210:intron 65.0%
GGCAGGTAACAGCTGCTGGG+AGG + chr3_4:3977549-3977568 Msa0486210:intron 65.0%
GGTGCAAAGGCGGCTGCATG+TGG + chr3_4:3978822-3978841 Msa0486210:CDS 65.0%
!! GGGGGTGCCTGCTTCCTTTC+AGG + chr3_4:3979304-3979323 Msa0486210:CDS 65.0%
TGGATGACCTCCCCATCCGC+AGG - chr3_4:3979988-3980007 None:intergenic 65.0%
AGGTACACGGTGGGGCTGCC+GGG - chr3_4:3975820-3975839 None:intergenic 70.0%
CGCCGGCAGGTAACAGCTGC+TGG + chr3_4:3977545-3977564 Msa0486210:intron 70.0%
GTGTTGAGCCGCCGAGCTGC+TGG + chr3_4:3979700-3979719 Msa0486210:CDS 70.0%
GAGGCACACCAGCAGCTCGG+CGG - chr3_4:3979711-3979730 None:intergenic 70.0%
TGTACGCGGTGCAGGGCCTG+CGG + chr3_4:3979969-3979988 Msa0486210:CDS 70.0%
GCGGTGCAGGGCCTGCGGAT+GGG + chr3_4:3979974-3979993 Msa0486210:CDS 75.0%
CGGTGCAGGGCCTGCGGATG+GGG + chr3_4:3979975-3979994 Msa0486210:CDS 75.0%
TGCAGGGCCTGCGGATGGGG+AGG + chr3_4:3979978-3979997 Msa0486210:CDS 75.0%
! CGCGGTGCAGGGCCTGCGGA+TGG + chr3_4:3979973-3979992 Msa0486210:CDS 80.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 3974712 3980191 3974712 ID=Msa0486210;Name=Msa0486210
chr3_4 mRNA 3974712 3980191 3974712 ID=Msa0486210-mRNA-1;Parent=Msa0486210;Name=Msa0486210-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0.42|0.37|1|1|1|8|0|668
chr3_4 exon 3974712 3974917 3974712 ID=Msa0486210-mRNA-1:exon:1496;Parent=Msa0486210-mRNA-1
chr3_4 exon 3975003 3975636 3975003 ID=Msa0486210-mRNA-1:exon:1497;Parent=Msa0486210-mRNA-1
chr3_4 exon 3977392 3977478 3977392 ID=Msa0486210-mRNA-1:exon:1498;Parent=Msa0486210-mRNA-1
chr3_4 exon 3977738 3977814 3977738 ID=Msa0486210-mRNA-1:exon:1499;Parent=Msa0486210-mRNA-1
chr3_4 exon 3977966 3978116 3977966 ID=Msa0486210-mRNA-1:exon:1500;Parent=Msa0486210-mRNA-1
chr3_4 exon 3978768 3978879 3978768 ID=Msa0486210-mRNA-1:exon:1501;Parent=Msa0486210-mRNA-1
chr3_4 exon 3979291 3979402 3979291 ID=Msa0486210-mRNA-1:exon:1502;Parent=Msa0486210-mRNA-1
chr3_4 exon 3979564 3980191 3979564 ID=Msa0486210-mRNA-1:exon:1503;Parent=Msa0486210-mRNA-1
chr3_4 CDS 3974712 3974917 3974712 ID=Msa0486210-mRNA-1:cds;Parent=Msa0486210-mRNA-1
chr3_4 CDS 3975003 3975636 3975003 ID=Msa0486210-mRNA-1:cds;Parent=Msa0486210-mRNA-1
chr3_4 CDS 3977392 3977478 3977392 ID=Msa0486210-mRNA-1:cds;Parent=Msa0486210-mRNA-1
chr3_4 CDS 3977738 3977814 3977738 ID=Msa0486210-mRNA-1:cds;Parent=Msa0486210-mRNA-1
chr3_4 CDS 3977966 3978116 3977966 ID=Msa0486210-mRNA-1:cds;Parent=Msa0486210-mRNA-1
chr3_4 CDS 3978768 3978879 3978768 ID=Msa0486210-mRNA-1:cds;Parent=Msa0486210-mRNA-1
chr3_4 CDS 3979291 3979402 3979291 ID=Msa0486210-mRNA-1:cds;Parent=Msa0486210-mRNA-1
chr3_4 CDS 3979564 3980191 3979564 ID=Msa0486210-mRNA-1:cds;Parent=Msa0486210-mRNA-1
Gene Sequence

>Msa0486210

ATGAATTATTATTATTCTCTGCACTGTCACTGTACTTACACCATCATTCATCCTCCCAGTCCCAGAAGGAATTCGAATCCTAATCGGAATCGGAACCATAATCAGCCAAGAGGATTCATTCTTCTTCCATCATTATCTTCATCATCCTCCATCCATCACCGTCTCGTGTCGGTTTCTGCCTCCTCTTCCACCCAAACCCAACCTAGGAACAATACCAACAACAAAGAAGACATTAATGTTCATCTACATCTTCGATTAGATCACCAAGTTGAATTCGGTGACCATGTTGTGCTTCTTGGATCAACCAAACAGTTGGGCTCCTGGACCACCCATGTTCCATTGAATTGGACACCAAATGGTTGGGTATGCGACTTCCATTTCAACGCCGGCGATCACCTTGAATTCAAATTCATCATTGTCCACCAGGATGGCACTTTACACTGGGAATCTGGTGACAACAGAGTATTAAACTTGCCCAATGCTGGTCATTTTCAGACCATTGCCAAATGGAACAAAACACACCAGACTATGGAGTTACTTCCTTTGAATTTCAATGAACAGAATAATAATAATAATGATTATGAGAAGGAGGCTGTTGCTAGTGCTCCTCTTTCAGATGCAGCAGGGCCGAGTCCTTTTGTAGGAGAGTGGCAAGGCAAATCTGTTTCTTTCATGCGATCCAACGACCATCAGACCCATGAAACACAAAGGACTTGGGATACCTCAGGTCTTCAAGGTTTGCCTCTCAAGTTTGTTCAAGGGGATCAAAGCGCAAGGAATTGGTGGAGAAAGGAACTCTTATATATTATTATTAAATTATTACCTATAATGTTGGAAAATGTTGAAAGAATTGTTCCTGGGTTGTTACCATCTCCAGTGGAAGGTCCTATTATCCTCATTGTTAACAAAGCTGACGGTGATGAAGAGGAAAAGGTCGTCTTTGTCACTTGTGAAGATGATGAAAAAATTGCTGATATTCAAAGGCTTATTGGGTCATGTGTAAGGTTGGAAGCATCTGCCGCTGGTGTTAATCTGACGTTGTCCTCTTCAGTTGACCTTGATGGCAATTCTTCTGTTGAAAGTGCTTTTGATGATAATATCTCTGGGGTTGATGTTCCTGCTTTCTCTGCTGGTAGAATCTCCAAATACAGTCAGGGTGCTTCTTCTACTGAAGTTATATTGCTTCCTGATGCTGAGACACAGACTTCCGGTGCAAAGGCGGCTGCATGTGGTCACTTGTCATCATTGTCTTCAGTTTCTGGTAAAGTTTACAGCGATCAGGGGGTGCCTGCTTCCTTTCAGGTTCCTTCTGGGGCAGTTTTACCATTTGGATCCATGGAATTGGAGCTAGAGAAGAGCAACTCCACTGAAATATTCAACGCCAATGTGGAGGACTTGGCTGGAATGTCAGCAGCTGGACTTTACGAATCAATACCCAATGTGAGTCCTTCCAATCAAACAGTCTTTGCAGATGCCATTGGCCAAGTATGGGCTTCACTGTACACACGAAGGGCAGTGTTGAGCCGCCGAGCTGCTGGTGTGCCTCAGAAGGAAGCTTCAATGGCAATTCTGATCCAAGAAATGCTTTCACCAGATCTATCATTTGTACTGCATACTATGAGCCCAACTGACCAGGATAACAATTCTGTGGAGGCTGAGATTGCTTCTGGCCTTGGTGAAACTCTAGCTTCAGTAACCCGGGGTACACCATGGCGTATATCATGTGGGAAATTTGATGGGCTTGTGCAAACACTGGCTTTTGCAAACTTCAGCGAGGAGTTACTTGTACGCGGTGCAGGGCCTGCGGATGGGGAGGTCATCCATTTGACGGTGGATTACAGCAAGAAACCACCGTCAGTTGACCCAGTTTTCCGTCGACAACTTGGTCAACGCCTTTGTGCAGTTTGGTTTTTCCTCGAGAGAAAGTTCGGATGCCCACAGGATGTGGAAGGATGTCTTGTTGGAAAAGACATTTATATTGTTCAGACAAGGCCCCAACCCCAGTAG
Protein sequence

>Msa0486210

MNYYYSLHCHCTYTIIHPPSPRRNSNPNRNRNHNQPRGFILLPSLSSSSSIHHRLVSVSASSSTQTQPRNNTNNKEDINVHLHLRLDHQVEFGDHVVLLGSTKQLGSWTTHVPLNWTPNGWVCDFHFNAGDHLEFKFIIVHQDGTLHWESGDNRVLNLPNAGHFQTIAKWNKTHQTMELLPLNFNEQNNNNNDYEKEAVASAPLSDAAGPSPFVGEWQGKSVSFMRSNDHQTHETQRTWDTSGLQGLPLKFVQGDQSARNWWRKELLYIIIKLLPIMLENVERIVPGLLPSPVEGPIILIVNKADGDEEEKVVFVTCEDDEKIADIQRLIGSCVRLEASAAGVNLTLSSSVDLDGNSSVESAFDDNISGVDVPAFSAGRISKYSQGASSTEVILLPDAETQTSGAKAAACGHLSSLSSVSGKVYSDQGVPASFQVPSGAVLPFGSMELELEKSNSTEIFNANVEDLAGMSAAGLYESIPNVSPSNQTVFADAIGQVWASLYTRRAVLSRRAAGVPQKEASMAILIQEMLSPDLSFVLHTMSPTDQDNNSVEAEIASGLGETLASVTRGTPWRISCGKFDGLVQTLAFANFSEELLVRGAGPADGEVIHLTVDYSKKPPSVDPVFRRQLGQRLCAVWFFLERKFGCPQDVEGCLVGKDIYIVQTRPQPQ*