Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387170 | XP_003601749.1 | 99.454 | 183 | 1 | 0 | 218 | 400 | 62 | 244 | 5.31e-130 | 384 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387170 | sp|O65874|MTF1_PEA | 89.894 | 188 | 12 | 5 | 218 | 400 | 62 | 247 | 6.77e-113 | 333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387170 | G7JBE5 | 99.454 | 183 | 1 | 0 | 218 | 400 | 62 | 244 | 2.54e-130 | 384 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000610 | Msa0387170 | 0.806099 | 9.697623e-50 | -8.615850e-47 |
| Msa0025060 | Msa0387170 | 0.804740 | 1.868061e-49 | -8.615850e-47 |
| Msa0025090 | Msa0387170 | 0.809251 | 2.075028e-50 | -8.615850e-47 |
| Msa0053480 | Msa0387170 | 0.832011 | 1.205807e-55 | -8.615850e-47 |
| Msa0063850 | Msa0387170 | 0.806248 | 9.018420e-50 | -8.615850e-47 |
| Msa0064440 | Msa0387170 | 0.821921 | 3.121241e-53 | -8.615850e-47 |
| Msa0099090 | Msa0387170 | 0.810143 | 1.334685e-50 | -8.615850e-47 |
| Msa0120310 | Msa0387170 | 0.833264 | 5.894144e-56 | -8.615850e-47 |
| Msa0136520 | Msa0387170 | 0.801952 | 7.064060e-49 | -8.615850e-47 |
| Msa0143360 | Msa0387170 | 0.825980 | 3.485609e-54 | -8.615850e-47 |
| Msa0155500 | Msa0387170 | 0.813997 | 1.927564e-51 | -8.615850e-47 |
| Msa0174800 | Msa0387170 | 0.814562 | 1.446153e-51 | -8.615850e-47 |
| Msa0187560 | Msa0387170 | 0.807982 | 3.872941e-50 | -8.615850e-47 |
| Msa0187820 | Msa0387170 | 0.835321 | 1.795957e-56 | -8.615850e-47 |
| Msa0198140 | Msa0387170 | 0.810560 | 1.085020e-50 | -8.615850e-47 |
| Msa0198220 | Msa0387170 | 0.815510 | 8.910062e-52 | -8.615850e-47 |
| Msa0210870 | Msa0387170 | 0.806150 | 9.460506e-50 | -8.615850e-47 |
| Msa0218480 | Msa0387170 | 0.810376 | 1.188646e-50 | -8.615850e-47 |
| Msa0218590 | Msa0387170 | 0.809712 | 1.652548e-50 | -8.615850e-47 |
| Msa0226580 | Msa0387170 | 0.836942 | 6.963048e-57 | -8.615850e-47 |
| Msa0365200 | Msa0387170 | 0.828577 | 8.322160e-55 | -8.615850e-47 |
| Msa0365360 | Msa0387170 | 0.805396 | 1.361896e-49 | -8.615850e-47 |
| Msa0370350 | Msa0387170 | 0.804330 | 2.275308e-49 | -8.615850e-47 |
| Msa0387170 | Msa0412480 | 0.809136 | 2.196593e-50 | -8.615850e-47 |
| Msa0387170 | Msa0433950 | 0.852432 | 4.633866e-61 | -8.615850e-47 |
| Msa0387170 | Msa0451370 | 0.859025 | 5.501932e-63 | -8.615850e-47 |
| Msa0387170 | Msa0477070 | 0.827213 | 1.770794e-54 | -8.615850e-47 |
| Msa0387170 | Msa0478750 | 0.820397 | 7.008122e-53 | -8.615850e-47 |
| Msa0387170 | Msa0481620 | 0.804105 | 2.533875e-49 | -8.615850e-47 |
| Msa0387170 | Msa0486210 | 0.841346 | 5.022822e-58 | -8.615850e-47 |
| Msa0387170 | Msa0493640 | 0.822042 | 2.926704e-53 | -8.615850e-47 |
| Msa0387170 | Msa0521440 | 0.825506 | 4.517718e-54 | -8.615850e-47 |
| Msa0387170 | Msa0522830 | 0.810085 | 1.373179e-50 | -8.615850e-47 |
| Msa0387170 | Msa0525940 | 0.800557 | 1.362902e-48 | -8.615850e-47 |
| Msa0387170 | Msa0540120 | 0.825406 | 4.769574e-54 | -8.615850e-47 |
| Msa0387170 | Msa0563230 | 0.817662 | 2.936092e-52 | -8.615850e-47 |
| Msa0387170 | Msa0564000 | 0.807846 | 4.141155e-50 | -8.615850e-47 |
| Msa0387170 | Msa0575540 | 0.802325 | 5.918634e-49 | -8.615850e-47 |
| Msa0387170 | Msa0578890 | 0.821669 | 3.571213e-53 | -8.615850e-47 |
| Msa0387170 | Msa0587060 | 0.813769 | 2.163970e-51 | -8.615850e-47 |
| Msa0387170 | Msa0595240 | 0.808406 | 3.145535e-50 | -8.615850e-47 |
| Msa0387170 | Msa0610850 | 0.841429 | 4.777840e-58 | -8.615850e-47 |
| Msa0387170 | Msa0617470 | 0.814363 | 1.600904e-51 | -8.615850e-47 |
| Msa0387170 | Msa0651340 | 0.801363 | 9.327662e-49 | -8.615850e-47 |
| Msa0387170 | Msa0665010 | 0.813258 | 2.803490e-51 | -8.615850e-47 |
| Msa0387170 | Msa0674680 | 0.801014 | 1.099376e-48 | -8.615850e-47 |
| Msa0387170 | Msa0693560 | 0.812735 | 3.651073e-51 | -8.615850e-47 |
| Msa0387170 | Msa0700250 | 0.820730 | 5.878379e-53 | -8.615850e-47 |
| Msa0387170 | Msa0797210 | 0.805509 | 1.290096e-49 | -8.615850e-47 |
| Msa0387170 | Msa0866960 | 0.802818 | 4.684134e-49 | -8.615850e-47 |
| Msa0387170 | Msa0872800 | 0.806382 | 8.450513e-50 | -8.615850e-47 |
| Msa0387170 | Msa0929460 | 0.800195 | 1.614859e-48 | -8.615850e-47 |
| Msa0387170 | Msa0930090 | 0.806321 | 8.707491e-50 | -8.615850e-47 |
| Msa0387170 | Msa0998940 | 0.801773 | 7.687382e-49 | -8.615850e-47 |
| Msa0387170 | Msa1025650 | 0.835477 | 1.640498e-56 | -8.615850e-47 |
| Msa0387170 | Msa1029190 | 0.804203 | 2.417783e-49 | -8.615850e-47 |
| Msa0387170 | Msa1038420 | 0.804959 | 1.681210e-49 | -8.615850e-47 |
| Msa0387170 | Msa1042380 | 0.825029 | 5.856865e-54 | -8.615850e-47 |
| Msa0387170 | Msa1103610 | 0.805796 | 1.122646e-49 | -8.615850e-47 |
| Msa0387170 | Msa1125100 | 0.817235 | 3.663813e-52 | -8.615850e-47 |
| Msa0387170 | Msa1125150 | 0.813750 | 2.185215e-51 | -8.615850e-47 |
| Msa0387170 | Msa1129320 | 0.807024 | 6.186593e-50 | -8.615850e-47 |
| Msa0387170 | Msa1147190 | 0.805965 | 1.034826e-49 | -8.615850e-47 |
| Msa0387170 | Msa1151970 | 0.813512 | 2.466004e-51 | -8.615850e-47 |
| Msa0387170 | Msa1154750 | 0.811382 | 7.198381e-51 | -8.615850e-47 |
| Msa0387170 | Msa1177360 | 0.824609 | 7.358822e-54 | -8.615850e-47 |
| Msa0387170 | Msa1179130 | 0.803817 | 2.909324e-49 | -8.615850e-47 |
| Msa0387170 | Msa1190460 | 0.818507 | 1.890566e-52 | -8.615850e-47 |
| Msa0387170 | Msa1192790 | 0.808291 | 3.329692e-50 | -8.615850e-47 |
| Msa0387170 | Msa1203090 | 0.813732 | 2.205126e-51 | -8.615850e-47 |
| Msa0387170 | Msa1204390 | 0.831391 | 1.714221e-55 | -8.615850e-47 |
| Msa0387170 | Msa1211120 | 0.802119 | 6.524618e-49 | -8.615850e-47 |
| Msa0387170 | Msa1211280 | 0.816789 | 4.614356e-52 | -8.615850e-47 |
| Msa0387170 | Msa1236740 | 0.826725 | 2.317658e-54 | -8.615850e-47 |
| Msa0387170 | Msa1244300 | 0.808104 | 3.648783e-50 | -8.615850e-47 |
| Msa0387170 | Msa1245210 | 0.810857 | 9.355356e-51 | -8.615850e-47 |
| Msa0387170 | Msa1245300 | 0.806893 | 6.594092e-50 | -8.615850e-47 |
| Msa0387170 | Msa1251960 | 0.805472 | 1.313089e-49 | -8.615850e-47 |
| Msa0387170 | Msa1296610 | 0.830157 | 3.439987e-55 | -8.615850e-47 |
| Msa0387170 | Msa1310050 | 0.839651 | 1.394486e-57 | -8.615850e-47 |
| Msa0387170 | Msa1327400 | 0.808687 | 2.740549e-50 | -8.615850e-47 |
| Msa0387170 | Msa1327420 | 0.808514 | 2.984070e-50 | -8.615850e-47 |
| Msa0387170 | Msa1329020 | 0.828725 | 7.661507e-55 | -8.615850e-47 |
| Msa0387170 | Msa1329820 | 0.807213 | 5.642514e-50 | -8.615850e-47 |
| Msa0387170 | Msa1344870 | 0.822248 | 2.621890e-53 | -8.615850e-47 |
| Msa0387170 | Msa1346920 | 0.829741 | 4.343776e-55 | -8.615850e-47 |
| Msa0387170 | Msa1381720 | 0.804233 | 2.382895e-49 | -8.615850e-47 |
| Msa0387170 | Msa1397550 | 0.802263 | 6.096431e-49 | -8.615850e-47 |
| Msa0387170 | Msa1413880 | 0.802558 | 5.300727e-49 | -8.615850e-47 |
| Msa0387170 | Msa1426690 | 0.804344 | 2.259556e-49 | -8.615850e-47 |
| Msa0387170 | Msa1433060 | 0.805834 | 1.102265e-49 | -8.615850e-47 |
| Msa0387170 | Msa1434850 | 0.804845 | 1.776546e-49 | -8.615850e-47 |
| Msa0251140 | Msa0387170 | 0.802056 | 6.722891e-49 | -8.615850e-47 |
| Msa0258280 | Msa0387170 | 0.813657 | 2.291234e-51 | -8.615850e-47 |
| Msa0263470 | Msa0387170 | 0.800484 | 1.410433e-48 | -8.615850e-47 |
| Msa0270640 | Msa0387170 | 0.825015 | 5.901151e-54 | -8.615850e-47 |
| Msa0278340 | Msa0387170 | 0.809946 | 1.471476e-50 | -8.615850e-47 |
| Msa0310260 | Msa0387170 | 0.807302 | 5.401389e-50 | -8.615850e-47 |
| Msa0359230 | Msa0387170 | 0.821862 | 3.221716e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387170 | MtrunA17_Chr3g0122251 | 98.378 | 185 | 1 | 1 | 218 | 400 | 62 | 246 | 3.67e-132 | 379 |
| Msa0387170 | MtrunA17_Chr3g0139921 | 82.353 | 221 | 28 | 5 | 2 | 213 | 1 | 219 | 1.19e-112 | 336 |
| Msa0387170 | MtrunA17_Chr8g0377551 | 80.874 | 183 | 31 | 4 | 219 | 400 | 1 | 180 | 3.75e-101 | 298 |
| Msa0387170 | MtrunA17_Chr6g0455511 | 56.701 | 194 | 66 | 6 | 218 | 399 | 62 | 249 | 7.69e-61 | 197 |
| Msa0387170 | MtrunA17_Chr7g0220111 | 54.688 | 192 | 72 | 6 | 218 | 399 | 62 | 248 | 1.03e-55 | 184 |
| Msa0387170 | MtrunA17_Chr5g0420091 | 47.468 | 158 | 79 | 2 | 218 | 375 | 62 | 215 | 2.98e-36 | 132 |
| Msa0387170 | MtrunA17_Chr8g0351051 | 38.384 | 198 | 106 | 5 | 214 | 399 | 57 | 250 | 1.29e-32 | 123 |
| Msa0387170 | MtrunA17_Chr4g0061671 | 48.214 | 112 | 55 | 1 | 219 | 330 | 63 | 171 | 2.46e-26 | 104 |
| Msa0387170 | MtrunA17_Chr4g0061691 | 47.664 | 107 | 55 | 1 | 219 | 325 | 63 | 168 | 4.11e-20 | 88.6 |
| Msa0387170 | MtrunA17_Chr2g0308271 | 38.636 | 132 | 80 | 1 | 218 | 349 | 33 | 163 | 2.94e-18 | 82.8 |
| Msa0387170 | MtrunA17_Chr8g0366231 | 42.991 | 107 | 60 | 1 | 219 | 325 | 63 | 168 | 6.07e-18 | 82.4 |
| Msa0387170 | MtrunA17_Chr6g0474371 | 41.905 | 105 | 61 | 0 | 221 | 325 | 65 | 169 | 2.82e-16 | 76.6 |
| Msa0387170 | MtrunA17_Chr1g0204111 | 34.862 | 109 | 71 | 0 | 221 | 329 | 80 | 188 | 1.03e-14 | 73.6 |
| Msa0387170 | MtrunA17_Chr7g0220121 | 33.835 | 133 | 85 | 1 | 218 | 350 | 62 | 191 | 2.86e-14 | 72.4 |
| Msa0387170 | MtrunA17_Chr5g0420081 | 39.252 | 107 | 64 | 1 | 219 | 325 | 63 | 168 | 6.94e-14 | 70.9 |
| Msa0387170 | MtrunA17_Chr7g0246401 | 33.333 | 132 | 71 | 5 | 280 | 399 | 2 | 128 | 4.51e-11 | 60.1 |
| Msa0387170 | MtrunA17_Chr8g0380021 | 28.662 | 157 | 110 | 2 | 222 | 377 | 81 | 236 | 6.60e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387170 | AT1G24260.1 | 68.280 | 186 | 53 | 5 | 218 | 400 | 62 | 244 | 9.60e-74 | 231 |
| Msa0387170 | AT1G24260.2 | 67.914 | 187 | 53 | 5 | 218 | 400 | 62 | 245 | 1.26e-73 | 230 |
| Msa0387170 | AT1G24260.3 | 64.516 | 186 | 47 | 5 | 218 | 400 | 62 | 231 | 6.26e-66 | 210 |
| Msa0387170 | AT3G02310.1 | 51.813 | 193 | 77 | 6 | 218 | 399 | 62 | 249 | 2.40e-51 | 172 |
| Msa0387170 | AT5G15800.1 | 50.000 | 194 | 80 | 5 | 218 | 399 | 62 | 250 | 7.34e-50 | 169 |
| Msa0387170 | AT5G15800.2 | 53.939 | 165 | 64 | 4 | 218 | 375 | 62 | 221 | 8.10e-48 | 164 |
| Msa0387170 | AT5G25770.1 | 51.974 | 152 | 66 | 3 | 66 | 213 | 5 | 153 | 8.10e-44 | 156 |
| Msa0387170 | AT5G25770.2 | 52.318 | 151 | 65 | 3 | 66 | 212 | 63 | 210 | 2.84e-43 | 156 |
| Msa0387170 | AT5G25770.3 | 52.318 | 151 | 65 | 3 | 66 | 212 | 66 | 213 | 3.17e-43 | 156 |
| Msa0387170 | AT3G02310.2 | 69.444 | 108 | 32 | 1 | 218 | 325 | 62 | 168 | 1.62e-42 | 148 |
| Msa0387170 | AT2G03710.2 | 35.122 | 205 | 111 | 6 | 212 | 399 | 57 | 256 | 3.52e-27 | 108 |
| Msa0387170 | AT2G03710.1 | 34.951 | 206 | 111 | 6 | 212 | 399 | 57 | 257 | 5.29e-27 | 108 |
| Msa0387170 | AT2G03710.3 | 46.847 | 111 | 57 | 1 | 219 | 329 | 64 | 172 | 1.59e-24 | 100 |
| Msa0387170 | AT2G45650.1 | 34.343 | 198 | 115 | 7 | 214 | 399 | 57 | 251 | 3.22e-24 | 100 |
| Msa0387170 | AT3G61120.1 | 40.157 | 127 | 69 | 2 | 214 | 338 | 57 | 178 | 1.43e-18 | 84.7 |
| Msa0387170 | AT1G69120.3 | 38.793 | 116 | 60 | 2 | 219 | 329 | 1 | 110 | 2.24e-17 | 80.1 |
| Msa0387170 | AT1G26310.1 | 37.857 | 140 | 71 | 3 | 219 | 346 | 63 | 198 | 2.30e-17 | 81.6 |
| Msa0387170 | AT1G69120.2 | 38.462 | 117 | 61 | 2 | 219 | 330 | 63 | 173 | 2.85e-17 | 80.9 |
| Msa0387170 | AT1G69120.1 | 38.462 | 117 | 61 | 2 | 219 | 330 | 63 | 173 | 7.73e-17 | 80.1 |
| Msa0387170 | AT5G60910.2 | 45.000 | 80 | 44 | 0 | 251 | 330 | 32 | 111 | 8.22e-15 | 72.8 |
| Msa0387170 | AT5G60910.1 | 45.000 | 80 | 44 | 0 | 251 | 330 | 94 | 173 | 2.23e-14 | 72.8 |
| Msa0387170 | AT4G18960.4 | 32.479 | 117 | 72 | 2 | 221 | 334 | 66 | 178 | 2.15e-11 | 62.8 |
| Msa0387170 | AT4G18960.3 | 33.036 | 112 | 68 | 2 | 221 | 329 | 66 | 173 | 4.27e-11 | 63.2 |
| Msa0387170 | AT4G18960.2 | 33.036 | 112 | 68 | 2 | 221 | 329 | 66 | 173 | 4.27e-11 | 63.2 |
Find 101 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACCCACCGTATCTTCTTC+TGG | 0.208011 | 3_1:+91075127 | Msa0387170:five_prime_UTR |
| TGCGAACCAACGTTACAAAT+TGG | 0.278441 | 3_1:+91078651 | Msa0387170:CDS |
| TTTAAGCTTATGCAGATATC+AGG | 0.292514 | 3_1:+91078764 | Msa0387170:intron |
| AAGTTCTCAATATCTTTCTT+TGG | 0.300746 | 3_1:-91075601 | None:intergenic |
| TCAAGATCTTTACTGCTTAG+AGG | 0.314850 | 3_1:-91078071 | None:intergenic |
| AGAGTTAGCACGTGCAGTTT+TGG | 0.315635 | 3_1:-91075198 | None:intergenic |
| TGTGGATCTGATTTGCTTCA+AGG | 0.316708 | 3_1:-91078120 | None:intergenic |
| GAATCTGAGTGCTGAAGATA+TGG | 0.338691 | 3_1:+91078566 | Msa0387170:CDS |
| AGGTCTTCTTGTCTGCTTAT+CGG | 0.339872 | 3_1:-91075792 | None:intergenic |
| GGGTGGTACTAGTTATGTTA+TGG | 0.348818 | 3_1:-91075110 | None:intergenic |
| AGTGCTGAAGATATGGGATA+TGG | 0.360357 | 3_1:+91078573 | Msa0387170:CDS |
| CTAGCTGATCCAGCATGAAT+TGG | 0.361524 | 3_1:-91078243 | None:intergenic |
| TGCTCACTCAAAGGAAGCTT+TGG | 0.364390 | 3_1:+91076750 | Msa0387170:CDS |
| CCCATGTAGTTATTCATGCT+TGG | 0.364997 | 3_1:-91078819 | None:intergenic |
| TTTGCGACTTGGACGGTTAA+CGG | 0.373378 | 3_1:-91075523 | None:intergenic |
| GTAGTTGTAGCAGCAGTTAG+AGG | 0.373596 | 3_1:-91075240 | None:intergenic |
| GGTGGTACTAGTTATGTTAT+GGG | 0.382816 | 3_1:-91075109 | None:intergenic |
| CCATGTAGTTATTCATGCTT+GGG | 0.382911 | 3_1:-91078818 | None:intergenic |
| ATAATCTCCTCATCGGTTGA+TGG | 0.388536 | 3_1:-91075568 | None:intergenic |
| TCATCATCCAGGTCAAAATC+AGG | 0.389043 | 3_1:+91078599 | Msa0387170:CDS |
| CACCCACCGTATCTTCTTCT+GGG | 0.392656 | 3_1:+91075128 | Msa0387170:five_prime_UTR |
| GCTGTCACCACCACTGATCC+TGG | 0.399437 | 3_1:-91078792 | None:intergenic |
| GAATTTGCTCTGTTCTTCAA+TGG | 0.416872 | 3_1:-91075361 | None:intergenic |
| GGCCAAGATCTTCTCCCATT+AGG | 0.418705 | 3_1:-91078049 | None:intergenic |
| CTTGTACATTAGGAACCTAA+TGG | 0.419408 | 3_1:+91078034 | Msa0387170:intron |
| AGGTATCAGAAATGCAACTA+TGG | 0.438111 | 3_1:+91076712 | Msa0387170:CDS |
| AACGTTGGTTCGCACTCGAT+TGG | 0.443300 | 3_1:-91078642 | None:intergenic |
| CTTGAGGAGGTCGTCTGTTA+CGG | 0.454080 | 3_1:-91075407 | None:intergenic |
| GAACTTCAATGATTTGCTAA+AGG | 0.460609 | 3_1:+91075618 | Msa0387170:CDS |
| GGATCAGTGGTGGTGACAGC+AGG | 0.464006 | 3_1:+91078795 | Msa0387170:CDS |
| CAAACAGAGCTCTTAGACAA+AGG | 0.465432 | 3_1:+91078396 | Msa0387170:CDS |
| GCGAACCAACGTTACAAATT+GGG | 0.466289 | 3_1:+91078652 | Msa0387170:CDS |
| GGAGGAAAGTTATGCACCAT+TGG | 0.471425 | 3_1:-91075547 | None:intergenic |
| AACCTAATGGGAGAAGATCT+TGG | 0.476280 | 3_1:+91078047 | Msa0387170:CDS |
| GCAGGAATTAAGCAGCCAAC+AGG | 0.478215 | 3_1:+91077881 | Msa0387170:intron |
| TGCAGATATCAGGCTGATCC+AGG | 0.479365 | 3_1:+91078774 | Msa0387170:intron |
| TTTGAGTGAGCATTAGCCTC+AGG | 0.480988 | 3_1:-91076739 | None:intergenic |
| CAAGATCTTTACTGCTTAGA+GGG | 0.491913 | 3_1:-91078070 | None:intergenic |
| GAGGAGGTCGTCTGTTACGG+AGG | 0.494509 | 3_1:-91075404 | None:intergenic |
| TAGCTGATCCAGCATGAATT+GGG | 0.496848 | 3_1:-91078242 | None:intergenic |
| TTGTACATTAGGAACCTAAT+GGG | 0.498132 | 3_1:+91078035 | Msa0387170:intron |
| AGTGTGAGCCTCAGCGATTA+TGG | 0.502010 | 3_1:-91075304 | None:intergenic |
| TATACTTGTTTGTACTGTGA+AGG | 0.513834 | 3_1:-91075826 | None:intergenic |
| CCCAAGCATGAATAACTACA+TGG | 0.518064 | 3_1:+91078818 | Msa0387170:CDS |
| TCAGCTTCAAGTATTCCTGT+TGG | 0.519289 | 3_1:-91077896 | None:intergenic |
| GAATCTCTACTTAACAATAG+AGG | 0.522796 | 3_1:+91075645 | Msa0387170:CDS |
| CTTCAGCACTCAGATTCAGT+TGG | 0.523222 | 3_1:-91078560 | None:intergenic |
| TCTATAGACCCAATTCATGC+TGG | 0.526193 | 3_1:+91078234 | Msa0387170:intron |
| GGATATGGGCGTCATCATCC+AGG | 0.528249 | 3_1:+91078588 | Msa0387170:CDS |
| AAACAGAGCTCTTAGACAAA+GGG | 0.529334 | 3_1:+91078397 | Msa0387170:CDS |
| CTTCAATGATTTGCTAAAGG+AGG | 0.550072 | 3_1:+91075621 | Msa0387170:CDS |
| GCTAGGTGATCTTCAACGTA+AGG | 0.552185 | 3_1:+91078261 | Msa0387170:CDS |
| GTATTAAGGAACGAGACAAT+CGG | 0.556968 | 3_1:+91075077 | None:intergenic |
| ACCGACCCAATTTGTAACGT+TGG | 0.557280 | 3_1:-91078657 | None:intergenic |
| TGATTTCATAATCTCCTCAT+CGG | 0.566337 | 3_1:-91075575 | None:intergenic |
| ATATCTACGTCCGTTGCTTG+AGG | 0.567698 | 3_1:+91075853 | Msa0387170:CDS |
| TGAGCCTCAGCGATTATGGC+AGG | 0.573201 | 3_1:-91075300 | None:intergenic |
| TCTGTTGATTCTCGTTACCA+TGG | 0.577431 | 3_1:+91076057 | Msa0387170:CDS |
| CTGTGAAGGAAAACAACTGC+AGG | 0.578552 | 3_1:-91075812 | None:intergenic |
| TGAATAACTACATGGGTGGA+TGG | 0.580988 | 3_1:+91078826 | Msa0387170:CDS |
| CAATTCATGCTGGATCAGCT+AGG | 0.586915 | 3_1:+91078244 | Msa0387170:CDS |
| GCAAATACATACATCGCGAT+AGG | 0.590599 | 3_1:-91076103 | None:intergenic |
| AAGATCTTGAAACACTTGAA+AGG | 0.590834 | 3_1:+91078084 | Msa0387170:CDS |
| CGTCCAAGTCGCAAAACCAA+TGG | 0.592502 | 3_1:+91075531 | Msa0387170:CDS |
| CGTTCTTTGCACGTTCACCA+TGG | 0.599058 | 3_1:-91076074 | None:intergenic |
| TGAGGCTAATGCTCACTCAA+AGG | 0.602089 | 3_1:+91076741 | Msa0387170:CDS |
| TTGTAGCAGCAGTTAGAGGA+AGG | 0.603912 | 3_1:-91075236 | None:intergenic |
| TGTAGGAAGGAGATCAAGGA+CGG | 0.608390 | 3_1:+91075738 | Msa0387170:intron |
| CAGTTAGAGGAAGGCACGTG+TGG | 0.608516 | 3_1:-91075227 | None:intergenic |
| GCATGCTCAAAACGCTTGAG+AGG | 0.610774 | 3_1:+91076692 | Msa0387170:intron |
| GTGCTGAAGATATGGGATAT+GGG | 0.612448 | 3_1:+91078574 | Msa0387170:CDS |
| ATGCAACCCAGAAGAAGATA+CGG | 0.613191 | 3_1:-91075134 | None:intergenic |
| TGTAAAGTTGAGTACCCTTG+TGG | 0.614190 | 3_1:-91078138 | None:intergenic |
| CATCATCCAGGTCAAAATCA+GGG | 0.621739 | 3_1:+91078600 | Msa0387170:CDS |
| ATCTCCTCATCGGTTGATGG+AGG | 0.625755 | 3_1:-91075565 | None:intergenic |
| CGTAACAGACGACCTCCTCA+AGG | 0.627335 | 3_1:+91075408 | Msa0387170:CDS |
| AATACATACATCGCGATAGG+TGG | 0.630146 | 3_1:-91076100 | None:intergenic |
| AGCATGAATAACTACATGGG+TGG | 0.631983 | 3_1:+91078822 | Msa0387170:CDS |
| TCAGGCTGATCCAGGATCAG+TGG | 0.632515 | 3_1:+91078782 | Msa0387170:CDS |
| TAGTAAGCAACCTCAAGCAA+CGG | 0.634422 | 3_1:-91075863 | None:intergenic |
| AATCTGAGTGCTGAAGATAT+GGG | 0.638446 | 3_1:+91078567 | Msa0387170:CDS |
| TTCAAGCTCAAAATCAACAC+AGG | 0.639285 | 3_1:-91075764 | None:intergenic |
| GGATTTGAAGAAACTCTGAT+CGG | 0.649728 | 3_1:-91075383 | None:intergenic |
| GGCTGATCCAGGATCAGTGG+TGG | 0.652694 | 3_1:+91078785 | Msa0387170:CDS |
| ATGCAACTATGGAGCACCTG+AGG | 0.652818 | 3_1:+91076723 | Msa0387170:CDS |
| ACAGGAATACTTGAAGCTGA+AGG | 0.654193 | 3_1:+91077899 | Msa0387170:CDS |
| TTTCAGGCATATGCTTCGCG+AGG | 0.664270 | 3_1:+91076021 | Msa0387170:intron |
| GGATCTGATTTGCTTCAAGG+AGG | 0.671453 | 3_1:-91078117 | None:intergenic |
| CCAAGCATGAATAACTACAT+GGG | 0.681040 | 3_1:+91078819 | Msa0387170:CDS |
| AATCTCTACAACGCACTCAG+AGG | 0.684339 | 3_1:+91077931 | Msa0387170:CDS |
| CTTTCCTCCATCAACCGATG+AGG | 0.685013 | 3_1:+91075561 | Msa0387170:CDS |
| GGAAACGTTGTACCTTGAGG+AGG | 0.689977 | 3_1:-91075420 | None:intergenic |
| CTATAACTAAACGTAAGCAG+AGG | 0.691590 | 3_1:-91076129 | None:intergenic |
| CAACCCAGAAGAAGATACGG+TGG | 0.692535 | 3_1:-91075131 | None:intergenic |
| AACCCAGAAGAAGATACGGT+GGG | 0.699020 | 3_1:-91075130 | None:intergenic |
| AACACCTGCCATAATCGCTG+AGG | 0.702101 | 3_1:+91075296 | Msa0387170:CDS |
| TGAAGCAAATCAGATCCACA+AGG | 0.704252 | 3_1:+91078123 | Msa0387170:CDS |
| CCAGAAGAAGATACGGTGGG+TGG | 0.721226 | 3_1:-91075127 | None:intergenic |
| TTAAGGAACGAGACAATCGG+AGG | 0.730122 | 3_1:+91075080 | None:intergenic |
| GAAGCAAATCAGATCCACAA+GGG | 0.737410 | 3_1:+91078124 | Msa0387170:CDS |
| GAAGGAACACTTGCTATGTG+AGG | 0.772195 | 3_1:+91078373 | Msa0387170:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAATTCTTATATAATTAA+AGG | - | chr3_1:91077833-91077852 | None:intergenic | 10.0% |
| !!! | ACTAATTAATTTGATTTCAT+AGG | + | chr3_1:91075686-91075705 | Msa0387170:intron | 15.0% |
| !!! | CTAATTAATTTGATTTCATA+GGG | + | chr3_1:91075687-91075706 | Msa0387170:intron | 15.0% |
| !!! | TTGATTAGCTTATAATAAAA+AGG | + | chr3_1:91075949-91075968 | Msa0387170:intron | 15.0% |
| !! | GAATAAAAATAGAAAAATGA+AGG | + | chr3_1:91077021-91077040 | Msa0387170:intron | 15.0% |
| !! | AGTGAATATATTCATAATAT+TGG | - | chr3_1:91077727-91077746 | None:intergenic | 15.0% |
| !! | AAAAAATGTATAGACAAAAA+AGG | - | chr3_1:91078170-91078189 | None:intergenic | 15.0% |
| !! | ATACTATATATACATACATA+TGG | + | chr3_1:91078456-91078475 | Msa0387170:intron | 15.0% |
| !!! | TTTTGTTTTTGTTCTTGTTT+AGG | + | chr3_1:91076820-91076839 | Msa0387170:intron | 20.0% |
| !!! | ATTGATAGTTGTTAATTTGT+TGG | + | chr3_1:91076902-91076921 | Msa0387170:intron | 20.0% |
| !! | AACTAATTCTACAAGTAATT+AGG | + | chr3_1:91077060-91077079 | Msa0387170:intron | 20.0% |
| !!! | AGAATGTTATTGATTAGAAT+TGG | + | chr3_1:91077186-91077205 | Msa0387170:intron | 20.0% |
| !! | ATTGAATATTGGATTGAATT+GGG | - | chr3_1:91077244-91077263 | None:intergenic | 20.0% |
| !! | TATTGAATATTGGATTGAAT+TGG | - | chr3_1:91077245-91077264 | None:intergenic | 20.0% |
| !!! | TGAGTTTTGATATTGAATAT+TGG | - | chr3_1:91077255-91077274 | None:intergenic | 20.0% |
| !!! | TATATCGTTTATTTTCTTGT+TGG | - | chr3_1:91077362-91077381 | None:intergenic | 20.0% |
| !! | CTAAAGAAATATTAACACAT+TGG | + | chr3_1:91077405-91077424 | Msa0387170:intron | 20.0% |
| !!! | GAATATATTCACTAAGATTT+TGG | + | chr3_1:91077734-91077753 | Msa0387170:intron | 20.0% |
| !! | GAATTTCATTTCTAGAAGAA+TGG | - | chr3_1:91075477-91075496 | None:intergenic | 25.0% |
| ! | AAGTTCTCAATATCTTTCTT+TGG | - | chr3_1:91075604-91075623 | None:intergenic | 25.0% |
| !!! | GAAATATTCGTTGATTTTGT+AGG | + | chr3_1:91075721-91075740 | Msa0387170:intron | 25.0% |
| !! | TGAATTGCACTATGTTATTT+AGG | + | chr3_1:91076278-91076297 | Msa0387170:intron | 25.0% |
| ! | TTTCCATTCAAATTTGTCAA+TGG | - | chr3_1:91076876-91076895 | None:intergenic | 25.0% |
| ! | AATTCTACAAGTAATTAGGA+AGG | + | chr3_1:91077064-91077083 | Msa0387170:intron | 25.0% |
| ! | ATTCTACAAGTAATTAGGAA+GGG | + | chr3_1:91077065-91077084 | Msa0387170:intron | 25.0% |
| ! | TAACATTCTTATTCTTGTCA+TGG | - | chr3_1:91077175-91077194 | None:intergenic | 25.0% |
| ! | TTGAATATTGGATTGAATTG+GGG | - | chr3_1:91077243-91077262 | None:intergenic | 25.0% |
| ! | TTTATAACCTACACAAATGA+AGG | + | chr3_1:91077312-91077331 | Msa0387170:intron | 25.0% |
| ! | ACAAAATTAATCGTTCCAAT+TGG | + | chr3_1:91077503-91077522 | Msa0387170:intron | 25.0% |
| ! | ATGTAAAGTTAGGAGAAATA+AGG | - | chr3_1:91077634-91077653 | None:intergenic | 25.0% |
| ! | CTAAGACAAAATGTAAAGTT+AGG | - | chr3_1:91077644-91077663 | None:intergenic | 25.0% |
| !!! | ATATATGATCAAGTATCGAT+CGG | - | chr3_1:91077959-91077978 | None:intergenic | 25.0% |
| !!! | AAGTATTTGACTTGTACATT+AGG | + | chr3_1:91078024-91078043 | Msa0387170:intron | 25.0% |
| !!! | TGTCTATACATTTTTTGTCT+CGG | + | chr3_1:91078174-91078193 | Msa0387170:intron | 25.0% |
| ! | ATGATAGCAAACATGATAAA+GGG | - | chr3_1:91078314-91078333 | None:intergenic | 25.0% |
| ! | TATGATAGCAAACATGATAA+AGG | - | chr3_1:91078315-91078334 | None:intergenic | 25.0% |
| !!! | TGTAATGTTTTTGTTTCAGA+TGG | + | chr3_1:91078515-91078534 | Msa0387170:intron | 25.0% |
| TCACATAGAATCTCCAAAAA+TGG | + | chr3_1:91075326-91075345 | Msa0387170:CDS | 30.0% | |
| TCTCCAAAAATGGAAGAAAA+TGG | + | chr3_1:91075336-91075355 | Msa0387170:CDS | 30.0% | |
| TGATTTCATAATCTCCTCAT+CGG | - | chr3_1:91075578-91075597 | None:intergenic | 30.0% | |
| !! | GAACTTCAATGATTTGCTAA+AGG | + | chr3_1:91075618-91075637 | Msa0387170:CDS | 30.0% |
| GAATCTCTACTTAACAATAG+AGG | + | chr3_1:91075645-91075664 | Msa0387170:CDS | 30.0% | |
| !!! | TATTCGTTGATTTTGTAGGA+AGG | + | chr3_1:91075725-91075744 | Msa0387170:intron | 30.0% |
| TATACTTGTTTGTACTGTGA+AGG | - | chr3_1:91075829-91075848 | None:intergenic | 30.0% | |
| !!! | TCATCGATTTTTTTTGCCTT+TGG | + | chr3_1:91075990-91076009 | Msa0387170:intron | 30.0% |
| ! | AAATCTATGAAGCACTTACA+CGG | + | chr3_1:91076355-91076374 | Msa0387170:intron | 30.0% |
| CAAATTGCTGTGATCAAATT+AGG | - | chr3_1:91076799-91076818 | None:intergenic | 30.0% | |
| TTGCCATTGACAAATTTGAA+TGG | + | chr3_1:91076870-91076889 | Msa0387170:intron | 30.0% | |
| ACAATATCCTTCATTTGTGT+AGG | - | chr3_1:91077322-91077341 | None:intergenic | 30.0% | |
| !!! | TTTTGTTTTTCATGCCTTGT+AGG | - | chr3_1:91077489-91077508 | None:intergenic | 30.0% |
| CACTTTCTATTTGATCCAAT+TGG | - | chr3_1:91077521-91077540 | None:intergenic | 30.0% | |
| CAATTGGATCAAATAGAAAG+TGG | + | chr3_1:91077519-91077538 | Msa0387170:intron | 30.0% | |
| TCATAGAAAAGGTCAAATCT+AGG | - | chr3_1:91077672-91077691 | None:intergenic | 30.0% | |
| ! | TTTGACCTTTTCTATGAAGA+AGG | + | chr3_1:91077675-91077694 | Msa0387170:intron | 30.0% |
| GTATACCTTCTTCATAGAAA+AGG | - | chr3_1:91077683-91077702 | None:intergenic | 30.0% | |
| !!! | GTTTTTTCTACCAAAAATGC+AGG | + | chr3_1:91077863-91077882 | Msa0387170:intron | 30.0% |
| GTACAAGTCAAATACTTCAT+TGG | - | chr3_1:91078021-91078040 | None:intergenic | 30.0% | |
| TTGTACATTAGGAACCTAAT+GGG | + | chr3_1:91078035-91078054 | Msa0387170:intron | 30.0% | |
| AAGATCTTGAAACACTTGAA+AGG | + | chr3_1:91078084-91078103 | Msa0387170:CDS | 30.0% | |
| !!! | ATGTGCTGAGTAACATTTTT+TGG | + | chr3_1:91078198-91078217 | Msa0387170:intron | 30.0% |
| ! | ACATATGGTGTTGAAATTTG+AGG | + | chr3_1:91078471-91078490 | Msa0387170:intron | 30.0% |
| !! | ATGTTTTTGTTTCAGATGGA+AGG | + | chr3_1:91078519-91078538 | Msa0387170:intron | 30.0% |
| !! | TGTTTTTGTTTCAGATGGAA+GGG | + | chr3_1:91078520-91078539 | Msa0387170:intron | 30.0% |
| TTTAAGCTTATGCAGATATC+AGG | + | chr3_1:91078764-91078783 | Msa0387170:intron | 30.0% | |
| GGTGGTACTAGTTATGTTAT+GGG | - | chr3_1:91075112-91075131 | None:intergenic | 35.0% | |
| ! | GAATTTGCTCTGTTCTTCAA+TGG | - | chr3_1:91075364-91075383 | None:intergenic | 35.0% |
| GGATTTGAAGAAACTCTGAT+CGG | - | chr3_1:91075386-91075405 | None:intergenic | 35.0% | |
| !! | CTTCAATGATTTGCTAAAGG+AGG | + | chr3_1:91075621-91075640 | Msa0387170:CDS | 35.0% |
| ! | ATTTTGTAGGAAGGAGATCA+AGG | + | chr3_1:91075734-91075753 | Msa0387170:intron | 35.0% |
| TTCAAGCTCAAAATCAACAC+AGG | - | chr3_1:91075767-91075786 | None:intergenic | 35.0% | |
| !!! | TGTGTTGATTTTGAGCTTGA+AGG | + | chr3_1:91075766-91075785 | Msa0387170:CDS | 35.0% |
| ! | ACTCATTTTGTTCTACTCCT+AGG | + | chr3_1:91075908-91075927 | Msa0387170:intron | 35.0% |
| CATGATAAATCCTGTTTCCT+AGG | - | chr3_1:91075928-91075947 | None:intergenic | 35.0% | |
| CTATAACTAAACGTAAGCAG+AGG | - | chr3_1:91076132-91076151 | None:intergenic | 35.0% | |
| ATATATACCACCAACATTCG+CGG | - | chr3_1:91076247-91076266 | None:intergenic | 35.0% | |
| AACTTCAATCTACTCAGAGA+AGG | + | chr3_1:91076323-91076342 | Msa0387170:intron | 35.0% | |
| TGTGTACCAAAACCAAACAA+TGG | + | chr3_1:91076516-91076535 | Msa0387170:intron | 35.0% | |
| !! | AACACACCATTGTTTGGTTT+TGG | - | chr3_1:91076525-91076544 | None:intergenic | 35.0% |
| ATTTCCAACAGTCTCATTTG+TGG | + | chr3_1:91076618-91076637 | Msa0387170:intron | 35.0% | |
| AGGTATCAGAAATGCAACTA+TGG | + | chr3_1:91076712-91076731 | Msa0387170:CDS | 35.0% | |
| AGGAGGGATACAAAAAGATT+CGG | - | chr3_1:91076962-91076981 | None:intergenic | 35.0% | |
| ! | TTTACATAGCGAGTCCTTTT+TGG | - | chr3_1:91076995-91077014 | None:intergenic | 35.0% |
| AAAAGGACTCGCTATGTAAA+TGG | + | chr3_1:91076995-91077014 | Msa0387170:intron | 35.0% | |
| ATGAACTAGAAGTTCGAATG+CGG | + | chr3_1:91077147-91077166 | Msa0387170:intron | 35.0% | |
| TTCTTGTTGGACCTTATAGT+GGG | - | chr3_1:91077349-91077368 | None:intergenic | 35.0% | |
| TTTCTTGTTGGACCTTATAG+TGG | - | chr3_1:91077350-91077369 | None:intergenic | 35.0% | |
| CTTGATTATGCATGTGTTGT+TGG | - | chr3_1:91077594-91077613 | None:intergenic | 35.0% | |
| ! | CTGCTTAATTCCTGCATTTT+TGG | - | chr3_1:91077876-91077895 | None:intergenic | 35.0% |
| CTTGTACATTAGGAACCTAA+TGG | + | chr3_1:91078034-91078053 | Msa0387170:intron | 35.0% | |
| CAAGATCTTTACTGCTTAGA+GGG | - | chr3_1:91078073-91078092 | None:intergenic | 35.0% | |
| TCAAGATCTTTACTGCTTAG+AGG | - | chr3_1:91078074-91078093 | None:intergenic | 35.0% | |
| CAAATTACAAAGTGAGCATG+AGG | - | chr3_1:91078340-91078359 | None:intergenic | 35.0% | |
| ATTTGCATCACTACTTGTGA+AGG | + | chr3_1:91078355-91078374 | Msa0387170:intron | 35.0% | |
| AAACAGAGCTCTTAGACAAA+GGG | + | chr3_1:91078397-91078416 | Msa0387170:CDS | 35.0% | |
| !! | AATCTGAGTGCTGAAGATAT+GGG | + | chr3_1:91078567-91078586 | Msa0387170:CDS | 35.0% |
| CCATGTAGTTATTCATGCTT+GGG | - | chr3_1:91078821-91078840 | None:intergenic | 35.0% | |
| CCAAGCATGAATAACTACAT+GGG | + | chr3_1:91078819-91078838 | Msa0387170:CDS | 35.0% | |
| GGGTGGTACTAGTTATGTTA+TGG | - | chr3_1:91075113-91075132 | None:intergenic | 40.0% | |
| ATGCAACCCAGAAGAAGATA+CGG | - | chr3_1:91075137-91075156 | None:intergenic | 40.0% | |
| !! | GCGCCATTTTCTTCCATTTT+TGG | - | chr3_1:91075342-91075361 | None:intergenic | 40.0% |
| ! | ATAATCTCCTCATCGGTTGA+TGG | - | chr3_1:91075571-91075590 | None:intergenic | 40.0% |
| AGGTCTTCTTGTCTGCTTAT+CGG | - | chr3_1:91075795-91075814 | None:intergenic | 40.0% | |
| TAGTAAGCAACCTCAAGCAA+CGG | - | chr3_1:91075866-91075885 | None:intergenic | 40.0% | |
| TTGTTCTACTCCTAGGAAAC+AGG | + | chr3_1:91075915-91075934 | Msa0387170:intron | 40.0% | |
| !! | TCTGTTGATTCTCGTTACCA+TGG | + | chr3_1:91076057-91076076 | Msa0387170:CDS | 40.0% |
| AATACATACATCGCGATAGG+TGG | - | chr3_1:91076103-91076122 | None:intergenic | 40.0% | |
| GCAAATACATACATCGCGAT+AGG | - | chr3_1:91076106-91076125 | None:intergenic | 40.0% | |
| ! | TAGTCTGTGAAGCACTTACA+CGG | + | chr3_1:91076149-91076168 | Msa0387170:intron | 40.0% |
| CAAATCCACAAGTAGATCCA+TGG | - | chr3_1:91076548-91076567 | None:intergenic | 40.0% | |
| AGTGAGGTAGCTCATTTATG+AGG | - | chr3_1:91076578-91076597 | None:intergenic | 40.0% | |
| TAAATGAGCTACCTCACTAG+TGG | + | chr3_1:91076580-91076599 | Msa0387170:intron | 40.0% | |
| GCAAATTTCTACCACTAGTG+AGG | - | chr3_1:91076594-91076613 | None:intergenic | 40.0% | |
| TGAACCACAAATGAGACTGT+TGG | - | chr3_1:91076625-91076644 | None:intergenic | 40.0% | |
| ! | CTCAAAGGAAGCTTTGGTAT+TGG | + | chr3_1:91076756-91076775 | Msa0387170:intron | 40.0% |
| ! | GTTTTGCTTCTCAAGGTTCT+TGG | - | chr3_1:91077217-91077236 | None:intergenic | 40.0% |
| ATATTGTCCACCCCACTATA+AGG | + | chr3_1:91077335-91077354 | Msa0387170:intron | 40.0% | |
| TCTTGTTGGACCTTATAGTG+GGG | - | chr3_1:91077348-91077367 | None:intergenic | 40.0% | |
| ! | TGAAGAGAGAGAGCATAATG+AGG | - | chr3_1:91077432-91077451 | None:intergenic | 40.0% |
| TCAGCTTCAAGTATTCCTGT+TGG | - | chr3_1:91077899-91077918 | None:intergenic | 40.0% | |
| ACAGGAATACTTGAAGCTGA+AGG | + | chr3_1:91077899-91077918 | Msa0387170:CDS | 40.0% | |
| AACCTAATGGGAGAAGATCT+TGG | + | chr3_1:91078047-91078066 | Msa0387170:CDS | 40.0% | |
| !! | TGTGGATCTGATTTGCTTCA+AGG | - | chr3_1:91078123-91078142 | None:intergenic | 40.0% |
| TGAAGCAAATCAGATCCACA+AGG | + | chr3_1:91078123-91078142 | Msa0387170:CDS | 40.0% | |
| GAAGCAAATCAGATCCACAA+GGG | + | chr3_1:91078124-91078143 | Msa0387170:CDS | 40.0% | |
| TGTAAAGTTGAGTACCCTTG+TGG | - | chr3_1:91078141-91078160 | None:intergenic | 40.0% | |
| TCTATAGACCCAATTCATGC+TGG | + | chr3_1:91078234-91078253 | Msa0387170:intron | 40.0% | |
| TAGCTGATCCAGCATGAATT+GGG | - | chr3_1:91078245-91078264 | None:intergenic | 40.0% | |
| CAAACAGAGCTCTTAGACAA+AGG | + | chr3_1:91078396-91078415 | Msa0387170:CDS | 40.0% | |
| ! | GGTGTTGAAATTTGAGGAGT+TGG | + | chr3_1:91078477-91078496 | Msa0387170:intron | 40.0% |
| !! | GAATCTGAGTGCTGAAGATA+TGG | + | chr3_1:91078566-91078585 | Msa0387170:CDS | 40.0% |
| ! | AGTGCTGAAGATATGGGATA+TGG | + | chr3_1:91078573-91078592 | Msa0387170:CDS | 40.0% |
| GTGCTGAAGATATGGGATAT+GGG | + | chr3_1:91078574-91078593 | Msa0387170:CDS | 40.0% | |
| TCATCATCCAGGTCAAAATC+AGG | + | chr3_1:91078599-91078618 | Msa0387170:CDS | 40.0% | |
| CATCATCCAGGTCAAAATCA+GGG | + | chr3_1:91078600-91078619 | Msa0387170:CDS | 40.0% | |
| TGCGAACCAACGTTACAAAT+TGG | + | chr3_1:91078651-91078670 | Msa0387170:CDS | 40.0% | |
| GCGAACCAACGTTACAAATT+GGG | + | chr3_1:91078652-91078671 | Msa0387170:CDS | 40.0% | |
| ACCAACGTTACAAATTGGGT+CGG | + | chr3_1:91078656-91078675 | Msa0387170:intron | 40.0% | |
| CCCAAGCATGAATAACTACA+TGG | + | chr3_1:91078818-91078837 | Msa0387170:CDS | 40.0% | |
| CCCATGTAGTTATTCATGCT+TGG | - | chr3_1:91078822-91078841 | None:intergenic | 40.0% | |
| AGCATGAATAACTACATGGG+TGG | + | chr3_1:91078822-91078841 | Msa0387170:CDS | 40.0% | |
| TGAATAACTACATGGGTGGA+TGG | + | chr3_1:91078826-91078845 | Msa0387170:CDS | 40.0% | |
| AACCCAGAAGAAGATACGGT+GGG | - | chr3_1:91075133-91075152 | None:intergenic | 45.0% | |
| ! | GAGTTAGCACGTGCAGTTTT+GGG | - | chr3_1:91075200-91075219 | None:intergenic | 45.0% |
| ! | AGAGTTAGCACGTGCAGTTT+TGG | - | chr3_1:91075201-91075220 | None:intergenic | 45.0% |
| TTGTAGCAGCAGTTAGAGGA+AGG | - | chr3_1:91075239-91075258 | None:intergenic | 45.0% | |
| GTAGTTGTAGCAGCAGTTAG+AGG | - | chr3_1:91075243-91075262 | None:intergenic | 45.0% | |
| ATACATAGCCATCGAGATCG+TGG | - | chr3_1:91075444-91075463 | None:intergenic | 45.0% | |
| ! | TTTGCGACTTGGACGGTTAA+CGG | - | chr3_1:91075526-91075545 | None:intergenic | 45.0% |
| !!! | CATTGGTTTTGCGACTTGGA+CGG | - | chr3_1:91075533-91075552 | None:intergenic | 45.0% |
| GGAGGAAAGTTATGCACCAT+TGG | - | chr3_1:91075550-91075569 | None:intergenic | 45.0% | |
| TGTAGGAAGGAGATCAAGGA+CGG | + | chr3_1:91075738-91075757 | Msa0387170:intron | 45.0% | |
| CTGTGAAGGAAAACAACTGC+AGG | - | chr3_1:91075815-91075834 | None:intergenic | 45.0% | |
| ATATCTACGTCCGTTGCTTG+AGG | + | chr3_1:91075853-91075872 | Msa0387170:CDS | 45.0% | |
| CCATGGAACACACCATTGTT+TGG | - | chr3_1:91076531-91076550 | None:intergenic | 45.0% | |
| CCAAACAATGGTGTGTTCCA+TGG | + | chr3_1:91076528-91076547 | Msa0387170:intron | 45.0% | |
| GTGTTCCATGGATCTACTTG+TGG | + | chr3_1:91076540-91076559 | Msa0387170:intron | 45.0% | |
| ! | TTTGAGTGAGCATTAGCCTC+AGG | - | chr3_1:91076742-91076761 | None:intergenic | 45.0% |
| TGAGGCTAATGCTCACTCAA+AGG | + | chr3_1:91076741-91076760 | Msa0387170:CDS | 45.0% | |
| TGCTCACTCAAAGGAAGCTT+TGG | + | chr3_1:91076750-91076769 | Msa0387170:CDS | 45.0% | |
| ! | TCTTTTTGTATCCCTCCTCG+AGG | + | chr3_1:91076964-91076983 | Msa0387170:intron | 45.0% |
| !!! | GGGGTTAGTTTTGCTTCTCA+AGG | - | chr3_1:91077224-91077243 | None:intergenic | 45.0% |
| TAACGCCAACATAGCCTACA+AGG | + | chr3_1:91077472-91077491 | Msa0387170:intron | 45.0% | |
| TCATGCCTTGTAGGCTATGT+TGG | - | chr3_1:91077480-91077499 | None:intergenic | 45.0% | |
| AATCTCTACAACGCACTCAG+AGG | + | chr3_1:91077931-91077950 | Msa0387170:CDS | 45.0% | |
| !! | GGATCTGATTTGCTTCAAGG+AGG | - | chr3_1:91078120-91078139 | None:intergenic | 45.0% |
| CTAGCTGATCCAGCATGAAT+TGG | - | chr3_1:91078246-91078265 | None:intergenic | 45.0% | |
| CAATTCATGCTGGATCAGCT+AGG | + | chr3_1:91078244-91078263 | Msa0387170:CDS | 45.0% | |
| GCTAGGTGATCTTCAACGTA+AGG | + | chr3_1:91078261-91078280 | Msa0387170:CDS | 45.0% | |
| !! | GAAGGAACACTTGCTATGTG+AGG | + | chr3_1:91078373-91078392 | Msa0387170:intron | 45.0% |
| CTTCAGCACTCAGATTCAGT+TGG | - | chr3_1:91078563-91078582 | None:intergenic | 45.0% | |
| !! | TGATCACCCTGATTTTGACC+TGG | - | chr3_1:91078609-91078628 | None:intergenic | 45.0% |
| ACCGACCCAATTTGTAACGT+TGG | - | chr3_1:91078660-91078679 | None:intergenic | 45.0% | |
| CACCCACCGTATCTTCTTCT+GGG | + | chr3_1:91075128-91075147 | Msa0387170:five_prime_UTR | 50.0% | |
| CAACCCAGAAGAAGATACGG+TGG | - | chr3_1:91075134-91075153 | None:intergenic | 50.0% | |
| !!! | AGTTTTGGGAGTGGGTAAGC+AGG | - | chr3_1:91075186-91075205 | None:intergenic | 50.0% |
| AACACCTGCCATAATCGCTG+AGG | + | chr3_1:91075296-91075315 | Msa0387170:CDS | 50.0% | |
| AGTGTGAGCCTCAGCGATTA+TGG | - | chr3_1:91075307-91075326 | None:intergenic | 50.0% | |
| CTTGAGGAGGTCGTCTGTTA+CGG | - | chr3_1:91075410-91075429 | None:intergenic | 50.0% | |
| GGAAACGTTGTACCTTGAGG+AGG | - | chr3_1:91075423-91075442 | None:intergenic | 50.0% | |
| CGTGGAAACGTTGTACCTTG+AGG | - | chr3_1:91075426-91075445 | None:intergenic | 50.0% | |
| CAACGTTTCCACGATCTCGA+TGG | + | chr3_1:91075433-91075452 | Msa0387170:intron | 50.0% | |
| CGTCCAAGTCGCAAAACCAA+TGG | + | chr3_1:91075531-91075550 | Msa0387170:CDS | 50.0% | |
| !!! | GCACCATTGGTTTTGCGACT+TGG | - | chr3_1:91075537-91075556 | None:intergenic | 50.0% |
| CTTTCCTCCATCAACCGATG+AGG | + | chr3_1:91075561-91075580 | Msa0387170:CDS | 50.0% | |
| !! | ATCTCCTCATCGGTTGATGG+AGG | - | chr3_1:91075568-91075587 | None:intergenic | 50.0% |
| ! | GCCTTTGGTCTTCGTGTTTC+AGG | + | chr3_1:91076005-91076024 | Msa0387170:intron | 50.0% |
| GCCTGAAACACGAAGACCAA+AGG | - | chr3_1:91076009-91076028 | None:intergenic | 50.0% | |
| TTTCAGGCATATGCTTCGCG+AGG | + | chr3_1:91076021-91076040 | Msa0387170:intron | 50.0% | |
| CGTTCTTTGCACGTTCACCA+TGG | - | chr3_1:91076077-91076096 | None:intergenic | 50.0% | |
| GCGGTCTGACACAACACTTA+CGG | - | chr3_1:91076228-91076247 | None:intergenic | 50.0% | |
| TTGTGTCAGACCGCGAATGT+TGG | + | chr3_1:91076234-91076253 | Msa0387170:intron | 50.0% | |
| ! | TGAAGCACTTACACGGACAC+AGG | + | chr3_1:91076156-91076175 | Msa0387170:intron | 50.0% |
| GCATGCTCAAAACGCTTGAG+AGG | + | chr3_1:91076692-91076711 | Msa0387170:intron | 50.0% | |
| ! | ATGCAACTATGGAGCACCTG+AGG | + | chr3_1:91076723-91076742 | Msa0387170:CDS | 50.0% |
| ! | TTTTGTATCCCTCCTCGAGG+TGG | + | chr3_1:91076967-91076986 | Msa0387170:intron | 50.0% |
| ! | TTTTGGATCCACCTCGAGGA+GGG | - | chr3_1:91076978-91076997 | None:intergenic | 50.0% |
| ! | TTTTTGGATCCACCTCGAGG+AGG | - | chr3_1:91076979-91076998 | None:intergenic | 50.0% |
| TCCTCGAGGTGGATCCAAAA+AGG | + | chr3_1:91076978-91076997 | Msa0387170:intron | 50.0% | |
| ! | TCCTTTTTGGATCCACCTCG+AGG | - | chr3_1:91076982-91077001 | None:intergenic | 50.0% |
| ! | TGTTGGACCTTATAGTGGGG+TGG | - | chr3_1:91077345-91077364 | None:intergenic | 50.0% |
| GCAGGAATTAAGCAGCCAAC+AGG | + | chr3_1:91077881-91077900 | Msa0387170:intron | 50.0% | |
| GGCCAAGATCTTCTCCCATT+AGG | - | chr3_1:91078052-91078071 | None:intergenic | 50.0% | |
| !! | AACGTTGGTTCGCACTCGAT+TGG | - | chr3_1:91078645-91078664 | None:intergenic | 50.0% |
| TGCAGATATCAGGCTGATCC+AGG | + | chr3_1:91078774-91078793 | Msa0387170:intron | 50.0% | |
| CCAGAAGAAGATACGGTGGG+TGG | - | chr3_1:91075130-91075149 | None:intergenic | 55.0% | |
| CCACCCACCGTATCTTCTTC+TGG | + | chr3_1:91075127-91075146 | Msa0387170:five_prime_UTR | 55.0% | |
| !!! | GCACGTGCAGTTTTGGGAGT+GGG | - | chr3_1:91075194-91075213 | None:intergenic | 55.0% |
| !!! | AGCACGTGCAGTTTTGGGAG+TGG | - | chr3_1:91075195-91075214 | None:intergenic | 55.0% |
| ! | CAGTTAGAGGAAGGCACGTG+TGG | - | chr3_1:91075230-91075249 | None:intergenic | 55.0% |
| TGAGCCTCAGCGATTATGGC+AGG | - | chr3_1:91075303-91075322 | None:intergenic | 55.0% | |
| CGTAACAGACGACCTCCTCA+AGG | + | chr3_1:91075408-91075427 | Msa0387170:CDS | 55.0% | |
| TGTCAGACCGCGAATGTTGG+TGG | + | chr3_1:91076237-91076256 | Msa0387170:intron | 55.0% | |
| GGATATGGGCGTCATCATCC+AGG | + | chr3_1:91078588-91078607 | Msa0387170:CDS | 55.0% | |
| TCAGGCTGATCCAGGATCAG+TGG | + | chr3_1:91078782-91078801 | Msa0387170:CDS | 55.0% | |
| GAGGAGGTCGTCTGTTACGG+AGG | - | chr3_1:91075407-91075426 | None:intergenic | 60.0% | |
| GGCTGATCCAGGATCAGTGG+TGG | + | chr3_1:91078785-91078804 | Msa0387170:CDS | 60.0% | |
| GCTGTCACCACCACTGATCC+TGG | - | chr3_1:91078795-91078814 | None:intergenic | 60.0% | |
| ! | GGATCAGTGGTGGTGACAGC+AGG | + | chr3_1:91078795-91078814 | Msa0387170:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 91075088 | 91078857 | 91075088 | ID=Msa0387170;Name=Msa0387170 |
| chr3_1 | mRNA | 91075088 | 91078857 | 91075088 | ID=Msa0387170-mRNA-1;Parent=Msa0387170;Name=Msa0387170-mRNA-1;_AED=0.12;_eAED=0.12;_QI=80|0.3|0.27|1|1|1|11|0|400 |
| chr3_1 | exon | 91075088 | 91075429 | 91075088 | ID=Msa0387170-mRNA-1:exon:25290;Parent=Msa0387170-mRNA-1 |
| chr3_1 | exon | 91075521 | 91075666 | 91075521 | ID=Msa0387170-mRNA-1:exon:25291;Parent=Msa0387170-mRNA-1 |
| chr3_1 | exon | 91075743 | 91075874 | 91075743 | ID=Msa0387170-mRNA-1:exon:25292;Parent=Msa0387170-mRNA-1 |
| chr3_1 | exon | 91076027 | 91076139 | 91076027 | ID=Msa0387170-mRNA-1:exon:25293;Parent=Msa0387170-mRNA-1 |
| chr3_1 | exon | 91076693 | 91076771 | 91076693 | ID=Msa0387170-mRNA-1:exon:25294;Parent=Msa0387170-mRNA-1 |
| chr3_1 | exon | 91077885 | 91077952 | 91077885 | ID=Msa0387170-mRNA-1:exon:25295;Parent=Msa0387170-mRNA-1 |
| chr3_1 | exon | 91078046 | 91078145 | 91078046 | ID=Msa0387170-mRNA-1:exon:25296;Parent=Msa0387170-mRNA-1 |
| chr3_1 | exon | 91078241 | 91078282 | 91078241 | ID=Msa0387170-mRNA-1:exon:25297;Parent=Msa0387170-mRNA-1 |
| chr3_1 | exon | 91078377 | 91078418 | 91078377 | ID=Msa0387170-mRNA-1:exon:25298;Parent=Msa0387170-mRNA-1 |
| chr3_1 | exon | 91078534 | 91078673 | 91078534 | ID=Msa0387170-mRNA-1:exon:25299;Parent=Msa0387170-mRNA-1 |
| chr3_1 | exon | 91078779 | 91078857 | 91078779 | ID=Msa0387170-mRNA-1:exon:25300;Parent=Msa0387170-mRNA-1 |
| chr3_1 | five_prime_UTR | 91075088 | 91075167 | 91075088 | ID=Msa0387170-mRNA-1:five_prime_utr;Parent=Msa0387170-mRNA-1 |
| chr3_1 | CDS | 91075168 | 91075429 | 91075168 | ID=Msa0387170-mRNA-1:cds;Parent=Msa0387170-mRNA-1 |
| chr3_1 | CDS | 91075521 | 91075666 | 91075521 | ID=Msa0387170-mRNA-1:cds;Parent=Msa0387170-mRNA-1 |
| chr3_1 | CDS | 91075743 | 91075874 | 91075743 | ID=Msa0387170-mRNA-1:cds;Parent=Msa0387170-mRNA-1 |
| chr3_1 | CDS | 91076027 | 91076139 | 91076027 | ID=Msa0387170-mRNA-1:cds;Parent=Msa0387170-mRNA-1 |
| chr3_1 | CDS | 91076693 | 91076771 | 91076693 | ID=Msa0387170-mRNA-1:cds;Parent=Msa0387170-mRNA-1 |
| chr3_1 | CDS | 91077885 | 91077952 | 91077885 | ID=Msa0387170-mRNA-1:cds;Parent=Msa0387170-mRNA-1 |
| chr3_1 | CDS | 91078046 | 91078145 | 91078046 | ID=Msa0387170-mRNA-1:cds;Parent=Msa0387170-mRNA-1 |
| chr3_1 | CDS | 91078241 | 91078282 | 91078241 | ID=Msa0387170-mRNA-1:cds;Parent=Msa0387170-mRNA-1 |
| chr3_1 | CDS | 91078377 | 91078418 | 91078377 | ID=Msa0387170-mRNA-1:cds;Parent=Msa0387170-mRNA-1 |
| chr3_1 | CDS | 91078534 | 91078673 | 91078534 | ID=Msa0387170-mRNA-1:cds;Parent=Msa0387170-mRNA-1 |
| chr3_1 | CDS | 91078779 | 91078857 | 91078779 | ID=Msa0387170-mRNA-1:cds;Parent=Msa0387170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
