Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0942220 | sp|Q93Z25|PLY22_ARATH | 73.449 | 403 | 104 | 2 | 14 | 413 | 30 | 432 | 0.0 | 616 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0942220 | G7KN73 | 99.010 | 404 | 4 | 0 | 10 | 413 | 1 | 404 | 0.0 | 831 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044160 | Msa0942220 | 0.809733 | 1.635126e-50 | -8.615850e-47 |
| Msa0605560 | Msa0942220 | 0.806160 | 9.412047e-50 | -8.615850e-47 |
| Msa0612350 | Msa0942220 | 0.802688 | 4.981413e-49 | -8.615850e-47 |
| Msa0657710 | Msa0942220 | 0.812596 | 3.915276e-51 | -8.615850e-47 |
| Msa0657720 | Msa0942220 | 0.823553 | 1.301911e-53 | -8.615850e-47 |
| Msa0682770 | Msa0942220 | 0.804292 | 2.316535e-49 | -8.615850e-47 |
| Msa0702790 | Msa0942220 | 0.816900 | 4.356275e-52 | -8.615850e-47 |
| Msa0702800 | Msa0942220 | 0.804098 | 2.542263e-49 | -8.615850e-47 |
| Msa0722890 | Msa0942220 | 0.826432 | 2.722389e-54 | -8.615850e-47 |
| Msa0723090 | Msa0942220 | 0.853089 | 3.008875e-61 | -8.615850e-47 |
| Msa0731590 | Msa0942220 | 0.812871 | 3.408989e-51 | -8.615850e-47 |
| Msa0738700 | Msa0942220 | 0.812339 | 4.456956e-51 | -8.615850e-47 |
| Msa0828950 | Msa0942220 | 0.817555 | 3.104004e-52 | -8.615850e-47 |
| Msa0828960 | Msa0942220 | 0.805719 | 1.165175e-49 | -8.615850e-47 |
| Msa0226310 | Msa0942220 | 0.807176 | 5.744075e-50 | -8.615850e-47 |
| Msa0401970 | Msa0942220 | 0.812277 | 4.596536e-51 | -8.615850e-47 |
| Msa0437520 | Msa0942220 | 0.803032 | 4.229888e-49 | -8.615850e-47 |
| Msa0284800 | Msa0942220 | 0.814020 | 1.905940e-51 | -8.615850e-47 |
| Msa0304570 | Msa0942220 | 0.813188 | 2.904069e-51 | -8.615850e-47 |
| Msa0304680 | Msa0942220 | 0.827712 | 1.344671e-54 | -8.615850e-47 |
| Msa0330520 | Msa0942220 | 0.816506 | 5.340692e-52 | -8.615850e-47 |
| Msa0528570 | Msa0942220 | 0.824238 | 8.992254e-54 | -8.615850e-47 |
| Msa0876930 | Msa0942220 | 0.848842 | 4.737206e-60 | -8.615850e-47 |
| Msa0876940 | Msa0942220 | 0.934441 | 4.022259e-96 | -8.615850e-47 |
| Msa0942210 | Msa0942220 | 0.946854 | 2.080789e-105 | -8.615850e-47 |
| Msa0942220 | Msa0979180 | 0.840817 | 6.916870e-58 | -8.615850e-47 |
| Msa0942220 | Msa1415540 | 0.826301 | 2.924290e-54 | -8.615850e-47 |
| Msa0942220 | Msa1449900 | 0.810261 | 1.258895e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0942220 | MtrunA17_Chr6g0458201 | 99.010 | 404 | 4 | 0 | 10 | 413 | 1 | 404 | 0.0 | 831 |
| Msa0942220 | MtrunA17_Chr4g0058051 | 81.152 | 382 | 71 | 1 | 33 | 413 | 26 | 407 | 0.0 | 639 |
| Msa0942220 | MtrunA17_Chr3g0116521 | 75.931 | 403 | 97 | 0 | 11 | 413 | 4 | 406 | 0.0 | 618 |
| Msa0942220 | MtrunA17_Chr3g0123321 | 75.448 | 391 | 93 | 2 | 23 | 413 | 16 | 403 | 0.0 | 589 |
| Msa0942220 | MtrunA17_Chr1g0169731 | 68.146 | 383 | 122 | 0 | 31 | 413 | 68 | 450 | 0.0 | 568 |
| Msa0942220 | MtrunA17_Chr7g0237761 | 66.062 | 386 | 131 | 0 | 28 | 413 | 59 | 444 | 0.0 | 551 |
| Msa0942220 | MtrunA17_Chr3g0123331 | 67.332 | 401 | 125 | 4 | 15 | 413 | 10 | 406 | 0.0 | 534 |
| Msa0942220 | MtrunA17_Chr1g0210321 | 64.116 | 379 | 133 | 1 | 36 | 411 | 35 | 413 | 0.0 | 515 |
| Msa0942220 | MtrunA17_Chr1g0180381 | 62.500 | 384 | 137 | 1 | 35 | 411 | 34 | 417 | 0.0 | 515 |
| Msa0942220 | MtrunA17_Chr7g0264891 | 63.757 | 378 | 136 | 1 | 35 | 411 | 35 | 412 | 9.30e-179 | 506 |
| Msa0942220 | MtrunA17_Chr4g0060211 | 57.219 | 374 | 155 | 3 | 43 | 413 | 63 | 434 | 3.24e-159 | 455 |
| Msa0942220 | MtrunA17_Chr5g0416061 | 55.978 | 368 | 161 | 1 | 47 | 413 | 82 | 449 | 1.31e-152 | 439 |
| Msa0942220 | MtrunA17_Chr4g0075231 | 61.143 | 350 | 132 | 3 | 65 | 413 | 39 | 385 | 1.63e-151 | 434 |
| Msa0942220 | MtrunA17_Chr8g0362561 | 53.367 | 401 | 171 | 4 | 29 | 413 | 55 | 455 | 6.73e-151 | 435 |
| Msa0942220 | MtrunA17_Chr5g0416041 | 55.670 | 388 | 163 | 3 | 35 | 413 | 62 | 449 | 3.21e-149 | 431 |
| Msa0942220 | MtrunA17_Chr6g0452861 | 50.115 | 435 | 189 | 5 | 3 | 413 | 23 | 453 | 1.97e-146 | 424 |
| Msa0942220 | MtrunA17_Chr2g0288921 | 59.143 | 350 | 139 | 3 | 65 | 413 | 63 | 409 | 3.32e-146 | 421 |
| Msa0942220 | MtrunA17_Chr7g0216581 | 57.910 | 354 | 148 | 1 | 61 | 413 | 98 | 451 | 3.87e-142 | 412 |
| Msa0942220 | MtrunA17_Chr8g0373761 | 45.480 | 354 | 185 | 6 | 65 | 413 | 42 | 392 | 1.84e-98 | 299 |
| Msa0942220 | MtrunA17_Chr3g0089181 | 45.000 | 360 | 178 | 7 | 65 | 413 | 23 | 373 | 4.25e-97 | 295 |
| Msa0942220 | MtrunA17_Chr8g0373721 | 45.198 | 354 | 186 | 7 | 65 | 413 | 42 | 392 | 5.73e-97 | 295 |
| Msa0942220 | MtrunA17_Chr8g0373731 | 45.198 | 354 | 186 | 6 | 65 | 413 | 42 | 392 | 3.91e-91 | 280 |
| Msa0942220 | MtrunA17_Chr8g0373701 | 43.503 | 354 | 192 | 6 | 65 | 413 | 97 | 447 | 5.35e-89 | 276 |
| Msa0942220 | MtrunA17_Chr5g0403391 | 42.373 | 354 | 196 | 6 | 65 | 413 | 41 | 391 | 1.40e-84 | 263 |
| Msa0942220 | MtrunA17_Chr5g0414541 | 42.373 | 354 | 196 | 6 | 65 | 413 | 41 | 391 | 2.29e-84 | 263 |
| Msa0942220 | MtrunA17_Chr5g0403481 | 42.090 | 354 | 197 | 6 | 65 | 413 | 41 | 391 | 6.17e-84 | 261 |
| Msa0942220 | MtrunA17_Chr5g0403461 | 42.090 | 354 | 197 | 6 | 65 | 413 | 41 | 391 | 6.17e-84 | 261 |
| Msa0942220 | MtrunA17_Chr5g0403491 | 42.090 | 354 | 197 | 6 | 65 | 413 | 41 | 391 | 6.17e-84 | 261 |
| Msa0942220 | MtrunA17_Chr4g0031851 | 45.955 | 309 | 161 | 5 | 104 | 409 | 28 | 333 | 1.17e-83 | 260 |
| Msa0942220 | MtrunA17_Chr5g0403411 | 42.090 | 354 | 197 | 6 | 65 | 413 | 41 | 391 | 1.77e-81 | 255 |
| Msa0942220 | MtrunA17_Chr1g0183941 | 43.657 | 268 | 147 | 3 | 140 | 405 | 1 | 266 | 2.86e-68 | 217 |
| Msa0942220 | MtrunA17_Chr3g0113551 | 76.984 | 126 | 29 | 0 | 210 | 335 | 161 | 286 | 6.07e-68 | 218 |
| Msa0942220 | MtrunA17_Chr6g0481851 | 40.433 | 277 | 109 | 6 | 98 | 373 | 6 | 227 | 8.04e-53 | 176 |
| Msa0942220 | MtrunA17_Chr1g0212931 | 38.699 | 292 | 153 | 7 | 78 | 368 | 9 | 275 | 7.32e-50 | 171 |
| Msa0942220 | MtrunA17_Chr2g0288901 | 50.641 | 156 | 72 | 3 | 259 | 413 | 5 | 156 | 1.94e-48 | 162 |
| Msa0942220 | MtrunA17_Chr2g0288911 | 63.115 | 122 | 44 | 1 | 140 | 260 | 1 | 122 | 3.27e-43 | 147 |
| Msa0942220 | MtrunA17_Chr1g0182021 | 36.491 | 285 | 157 | 4 | 84 | 368 | 64 | 324 | 4.24e-40 | 147 |
| Msa0942220 | MtrunA17_Chr1g0183951 | 37.778 | 90 | 53 | 2 | 38 | 126 | 17 | 104 | 1.71e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0942220 | AT3G27400.2 | 72.660 | 406 | 105 | 2 | 13 | 413 | 12 | 416 | 0.0 | 616 |
| Msa0942220 | AT5G63180.1 | 73.449 | 403 | 104 | 2 | 14 | 413 | 30 | 432 | 0.0 | 616 |
| Msa0942220 | AT3G27400.1 | 72.660 | 406 | 105 | 2 | 13 | 413 | 8 | 412 | 0.0 | 615 |
| Msa0942220 | AT1G67750.1 | 74.036 | 389 | 99 | 1 | 25 | 413 | 22 | 408 | 0.0 | 607 |
| Msa0942220 | AT4G24780.2 | 72.059 | 408 | 110 | 3 | 9 | 413 | 2 | 408 | 0.0 | 596 |
| Msa0942220 | AT4G24780.1 | 72.059 | 408 | 110 | 3 | 9 | 413 | 2 | 408 | 0.0 | 596 |
| Msa0942220 | AT4G13710.1 | 66.667 | 393 | 127 | 1 | 25 | 413 | 78 | 470 | 0.0 | 588 |
| Msa0942220 | AT4G13710.2 | 66.667 | 393 | 127 | 1 | 25 | 413 | 59 | 451 | 0.0 | 588 |
| Msa0942220 | AT3G07010.1 | 67.233 | 412 | 128 | 1 | 9 | 413 | 5 | 416 | 0.0 | 573 |
| Msa0942220 | AT3G07010.2 | 71.088 | 377 | 109 | 0 | 37 | 413 | 7 | 383 | 0.0 | 568 |
| Msa0942220 | AT1G04680.1 | 67.617 | 386 | 121 | 1 | 32 | 413 | 44 | 429 | 0.0 | 556 |
| Msa0942220 | AT3G24670.1 | 68.586 | 382 | 120 | 0 | 32 | 413 | 59 | 440 | 0.0 | 551 |
| Msa0942220 | AT3G24230.1 | 65.285 | 386 | 129 | 2 | 32 | 413 | 67 | 451 | 0.0 | 545 |
| Msa0942220 | AT5G48900.1 | 68.848 | 382 | 119 | 0 | 32 | 413 | 36 | 417 | 0.0 | 535 |
| Msa0942220 | AT4G13210.2 | 68.407 | 383 | 120 | 1 | 32 | 413 | 56 | 438 | 0.0 | 528 |
| Msa0942220 | AT4G13210.1 | 68.407 | 383 | 120 | 1 | 32 | 413 | 19 | 401 | 0.0 | 526 |
| Msa0942220 | AT3G53190.1 | 61.017 | 413 | 144 | 3 | 10 | 405 | 2 | 414 | 1.62e-179 | 509 |
| Msa0942220 | AT5G04310.3 | 62.402 | 383 | 131 | 1 | 36 | 405 | 53 | 435 | 5.69e-171 | 487 |
| Msa0942220 | AT5G04310.1 | 61.856 | 388 | 135 | 1 | 36 | 410 | 53 | 440 | 5.85e-170 | 486 |
| Msa0942220 | AT5G04310.2 | 61.856 | 388 | 135 | 1 | 36 | 410 | 53 | 440 | 5.85e-170 | 486 |
| Msa0942220 | AT5G55720.1 | 56.858 | 401 | 158 | 4 | 14 | 413 | 6 | 392 | 1.55e-167 | 475 |
| Msa0942220 | AT3G54920.1 | 59.481 | 385 | 132 | 4 | 36 | 405 | 37 | 412 | 4.09e-167 | 478 |
| Msa0942220 | AT1G14420.1 | 53.947 | 380 | 167 | 2 | 42 | 413 | 80 | 459 | 3.13e-150 | 434 |
| Msa0942220 | AT1G11920.1 | 58.000 | 350 | 144 | 3 | 65 | 413 | 37 | 384 | 1.35e-147 | 424 |
| Msa0942220 | AT4G22090.1 | 57.429 | 350 | 145 | 3 | 65 | 413 | 47 | 393 | 1.49e-145 | 419 |
| Msa0942220 | AT5G15110.1 | 54.930 | 355 | 158 | 2 | 61 | 413 | 118 | 472 | 1.78e-144 | 420 |
| Msa0942220 | AT3G01270.1 | 55.775 | 355 | 155 | 2 | 61 | 413 | 121 | 475 | 3.41e-144 | 419 |
| Msa0942220 | AT4G22080.1 | 57.143 | 350 | 146 | 3 | 65 | 413 | 47 | 393 | 1.91e-143 | 414 |
| Msa0942220 | AT1G30350.1 | 52.010 | 398 | 158 | 5 | 16 | 413 | 4 | 368 | 1.72e-139 | 403 |
| Msa0942220 | AT2G02720.1 | 53.239 | 355 | 160 | 1 | 65 | 413 | 101 | 455 | 5.26e-139 | 405 |
| Msa0942220 | AT5G09280.1 | 47.984 | 248 | 127 | 2 | 98 | 344 | 6 | 252 | 9.52e-78 | 243 |
| Msa0942220 | AT3G55140.1 | 39.510 | 286 | 147 | 7 | 84 | 368 | 16 | 276 | 2.23e-50 | 173 |
| Msa0942220 | AT3G09540.1 | 36.111 | 288 | 158 | 5 | 82 | 368 | 61 | 323 | 2.50e-43 | 155 |
| Msa0942220 | AT3G55140.2 | 39.044 | 251 | 132 | 6 | 119 | 368 | 22 | 252 | 3.86e-42 | 150 |
| Msa0942220 | AT3G09540.3 | 35.764 | 288 | 155 | 6 | 82 | 368 | 61 | 319 | 2.00e-41 | 150 |
| Msa0942220 | AT3G09540.2 | 35.510 | 245 | 134 | 4 | 82 | 326 | 61 | 281 | 8.44e-36 | 133 |
Find 91 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTATTGCATTTAATCATTT+TGG | 0.123912 | 6_3:-16751060 | Msa0942220:CDS |
| TGTTTAATTCACAACATATT+TGG | 0.148343 | 6_3:-16751242 | Msa0942220:CDS |
| CACCAGAACATAGTGGATTT+TGG | 0.165374 | 6_3:-16751293 | Msa0942220:CDS |
| TGTCGGTTGTTCTCCCAATT+TGG | 0.183698 | 6_3:+16751669 | None:intergenic |
| GAAGAGGATGAAACAAAATT+TGG | 0.190078 | 6_3:+16752699 | None:intergenic |
| ATGCATACCTTGGCATTCTT+TGG | 0.240400 | 6_3:+16751025 | None:intergenic |
| ATCTACATTGTCACTGATTC+AGG | 0.262745 | 6_3:-16751585 | Msa0942220:CDS |
| TCAATTAAAACAAGAGCTTT+TGG | 0.287323 | 6_3:-16751466 | Msa0942220:CDS |
| TCATGACAAAGTTATGCTTT+TGG | 0.300199 | 6_3:-16751124 | Msa0942220:CDS |
| GCTGATTGTGCAATTGGATT+TGG | 0.305034 | 6_3:-16751639 | Msa0942220:CDS |
| GTCGGTTGTTCTCCCAATTT+GGG | 0.308400 | 6_3:+16751670 | None:intergenic |
| CAATTCAAGATGAACCATTA+TGG | 0.310393 | 6_3:-16751515 | Msa0942220:CDS |
| TCCTTGCTAAATCTATTATC+TGG | 0.317797 | 6_3:+16749970 | None:intergenic |
| TACCTTAATGTTCCTGGCTT+AGG | 0.318773 | 6_3:+16751543 | None:intergenic |
| GTTGGAGATGTGACCCAAAT+TGG | 0.323275 | 6_3:-16751683 | Msa0942220:CDS |
| GGTTCCATCACTACTACTTC+TGG | 0.332285 | 6_3:-16749781 | Msa0942220:CDS |
| GCACCATACCTTAATGTTCC+TGG | 0.337883 | 6_3:+16751537 | None:intergenic |
| TTCCCTTGGCTGTTGATTGT+AGG | 0.338196 | 6_3:+16750006 | None:intergenic |
| ACCTTAATGTTCCTGGCTTA+GGG | 0.354026 | 6_3:+16751544 | None:intergenic |
| ACATCTTGTACAACAAGTTC+AGG | 0.356255 | 6_3:+16752666 | None:intergenic |
| AGACTAGCTGATTGTGCAAT+TGG | 0.358822 | 6_3:-16751645 | Msa0942220:CDS |
| ACCCTAAGCCAGGAACATTA+AGG | 0.369613 | 6_3:-16751545 | Msa0942220:CDS |
| GTGAATATAATAGCTGGAAT+TGG | 0.370547 | 6_3:-16749918 | Msa0942220:CDS |
| CACAATCAGCTAGTCTTTGT+CGG | 0.381751 | 6_3:+16751652 | None:intergenic |
| GCAAGACCAGCCTCTCTTGT+TGG | 0.384223 | 6_3:-16749802 | Msa0942220:CDS |
| GAGGGTGATTTGTTCTTGAA+TGG | 0.394829 | 6_3:-16749889 | Msa0942220:CDS |
| CTCTAGGTCTAGGAGAAACT+TGG | 0.396252 | 6_3:-16751745 | Msa0942220:CDS |
| AAGAGGATGAAACAAAATTT+GGG | 0.396495 | 6_3:+16752700 | None:intergenic |
| GGCTATTTATCATGTGGAAC+TGG | 0.405816 | 6_3:-16751723 | Msa0942220:CDS |
| GGAGCATTCTTTAGAACAAC+TGG | 0.412632 | 6_3:-16749868 | Msa0942220:CDS |
| GTTCATGATTGTGTTCCAAC+GGG | 0.420422 | 6_3:-16751336 | Msa0942220:CDS |
| TCCCTTGGCTGTTGATTGTA+GGG | 0.426471 | 6_3:+16750007 | None:intergenic |
| AATTCATACAAGACAATTGA+TGG | 0.427271 | 6_3:-16751441 | Msa0942220:CDS |
| AGAAATTTAAATACATTCAA+AGG | 0.435853 | 6_3:-16749574 | Msa0942220:three_prime_UTR |
| GATCATATTCAAAAGAGATA+TGG | 0.439191 | 6_3:-16751493 | Msa0942220:CDS |
| GCAATCCAATTGATGATTGT+TGG | 0.439325 | 6_3:-16751701 | Msa0942220:CDS |
| AAGTTATCTCCTATTAAAAT+CGG | 0.439382 | 6_3:-16749679 | Msa0942220:three_prime_UTR |
| CATCTCCAACAATCATCAAT+TGG | 0.440002 | 6_3:+16751696 | None:intergenic |
| CATTGGGAAATGTATGCAAT+TGG | 0.444123 | 6_3:-16750042 | Msa0942220:CDS |
| GAACAATGATTACACACATT+GGG | 0.453403 | 6_3:-16750058 | Msa0942220:CDS |
| GTTAATAATGTTATAATACA+TGG | 0.461906 | 6_3:-16751366 | Msa0942220:CDS |
| GGATTTGGAAAAGATGCAAT+TGG | 0.464882 | 6_3:-16751624 | Msa0942220:CDS |
| CAGAAAGTGAATATAATAGC+TGG | 0.465031 | 6_3:-16749924 | Msa0942220:CDS |
| GTCCAAAATCCACTATGTTC+TGG | 0.466293 | 6_3:+16751291 | None:intergenic |
| GTGCAAGAAATCTGTTCCCT+TGG | 0.476596 | 6_3:+16749992 | None:intergenic |
| GAAATTTAAATACATTCAAA+GGG | 0.484119 | 6_3:-16749573 | Msa0942220:three_prime_UTR |
| GCATCAATGTCTCTAGGTCT+AGG | 0.489694 | 6_3:-16751755 | Msa0942220:CDS |
| TGGTGTGCTCTCTTGCAAGA+AGG | 0.490798 | 6_3:-16749761 | Msa0942220:CDS |
| TTGGAGATGTGACCCAAATT+GGG | 0.502512 | 6_3:-16751682 | Msa0942220:CDS |
| CTAATATTTGTGTTCCCCGT+TGG | 0.503319 | 6_3:+16751321 | None:intergenic |
| GGTGTGCTCTCTTGCAAGAA+GGG | 0.508661 | 6_3:-16749760 | Msa0942220:CDS |
| AGCTGGAATTGGAGATCAGA+GGG | 0.527960 | 6_3:-16749907 | Msa0942220:CDS |
| TCTTTGTCTAATTGTCGTGA+TGG | 0.533384 | 6_3:-16751207 | Msa0942220:CDS |
| TGGGAAATGTATGCAATTGG+AGG | 0.535593 | 6_3:-16750039 | Msa0942220:CDS |
| ATGGAACCAACAAGAGAGGC+TGG | 0.542918 | 6_3:+16749796 | None:intergenic |
| TGTTCATGATTGTGTTCCAA+CGG | 0.543560 | 6_3:-16751337 | Msa0942220:CDS |
| TACACAAGACAAGGACATGC+AGG | 0.544315 | 6_3:-16751085 | Msa0942220:CDS |
| GTAGGAGCATCAATGTCTCT+AGG | 0.545125 | 6_3:-16751761 | Msa0942220:intron |
| GGTCTTATTGATGTTATACA+TGG | 0.549548 | 6_3:-16751186 | Msa0942220:CDS |
| TGAACAATGATTACACACAT+TGG | 0.549687 | 6_3:-16750059 | Msa0942220:CDS |
| TTACATGCAATACATTTCAT+CGG | 0.550031 | 6_3:-16749400 | None:intergenic |
| GTTAAATTATTGACGAGAGA+CGG | 0.554814 | 6_3:+16749638 | None:intergenic |
| CACACCAGAAGTAGTAGTGA+TGG | 0.559967 | 6_3:+16749777 | None:intergenic |
| AGAGATTCACCAGAACATAG+TGG | 0.561715 | 6_3:-16751300 | Msa0942220:CDS |
| TACAAGACAATTGATGGAAG+AGG | 0.566366 | 6_3:-16751435 | Msa0942220:CDS |
| AATTCCATCACCATCTGAAA+CGG | 0.566606 | 6_3:+16751269 | None:intergenic |
| ACCAGATAATAGATTTAGCA+AGG | 0.568377 | 6_3:-16749971 | Msa0942220:CDS |
| TTGCATGTAACAAATTAAAG+TGG | 0.568792 | 6_3:+16749413 | None:intergenic |
| AACCCTACAATCAACAGCCA+AGG | 0.572050 | 6_3:-16750009 | Msa0942220:CDS |
| AACTTGGGCTATTTATCATG+TGG | 0.574554 | 6_3:-16751729 | Msa0942220:CDS |
| TGGACCGTTTCAGATGGTGA+TGG | 0.575388 | 6_3:-16751273 | Msa0942220:CDS |
| AAGCCAGGAACATTAAGGTA+TGG | 0.578760 | 6_3:-16751540 | Msa0942220:CDS |
| TTCAGGGTCTTGAACTGAAG+AGG | 0.579107 | 6_3:+16752683 | None:intergenic |
| GTGCAGATTACTACTAATAG+AGG | 0.579364 | 6_3:+16749439 | None:intergenic |
| GCTAGTGTTCACATTGCAAA+TGG | 0.586396 | 6_3:-16751411 | Msa0942220:CDS |
| ATGTAACAAATTAAAGTGGT+TGG | 0.594237 | 6_3:+16749417 | None:intergenic |
| CATCTTGTACAACAAGTTCA+GGG | 0.601679 | 6_3:+16752667 | None:intergenic |
| GATGCAGTAAACCCTAAGCC+AGG | 0.603794 | 6_3:-16751555 | Msa0942220:CDS |
| GGGAAATGTATGCAATTGGA+GGG | 0.622895 | 6_3:-16750038 | Msa0942220:CDS |
| CAAGGAAGTAACAAAGCATG+AGG | 0.625208 | 6_3:-16749953 | Msa0942220:CDS |
| TTTGGAAAAGATGCAATTGG+TGG | 0.625951 | 6_3:-16751621 | Msa0942220:CDS |
| ACCCTACAATCAACAGCCAA+GGG | 0.631197 | 6_3:-16750008 | Msa0942220:CDS |
| TCTAGGTCTAGGAGAAACTT+GGG | 0.631443 | 6_3:-16751744 | Msa0942220:CDS |
| AGATTACTACTAATAGAGGA+TGG | 0.635473 | 6_3:+16749443 | None:intergenic |
| AGTGTTCACATTGCAAATGG+TGG | 0.646316 | 6_3:-16751408 | Msa0942220:CDS |
| TAGCTGGAATTGGAGATCAG+AGG | 0.658304 | 6_3:-16749908 | Msa0942220:CDS |
| AGTGATGGAACCAACAAGAG+AGG | 0.669990 | 6_3:+16749792 | None:intergenic |
| TTCATGATTGTGTTCCAACG+GGG | 0.684589 | 6_3:-16751335 | Msa0942220:CDS |
| TGATTCTTATACACAAGACA+AGG | 0.687935 | 6_3:-16751094 | Msa0942220:CDS |
| TTGTTGTACAAGATGTACAA+AGG | 0.691137 | 6_3:-16752659 | Msa0942220:intron |
| GGCTTGTCCAAAGAATGCCA+AGG | 0.703891 | 6_3:-16751032 | Msa0942220:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATAATATATAATTAACT+TGG | + | chr6_3:16750324-16750343 | None:intergenic | 10.0% |
| !!! | CATTTTTTTTTTATGTTTAT+GGG | + | chr6_3:16751775-16751794 | None:intergenic | 10.0% |
| !!! | ACATTTTTTTTTTATGTTTA+TGG | + | chr6_3:16751776-16751795 | None:intergenic | 10.0% |
| !!! | TAATTTAACTTTTTTAATAG+TGG | - | chr6_3:16752570-16752589 | Msa0942220:intron | 10.0% |
| !!! | ACTTTTTTTTCTTTCTAAAT+GGG | + | chr6_3:16750069-16750088 | None:intergenic | 15.0% |
| !!! | TTCTTGTTTGTTTTTTTAAA+AGG | - | chr6_3:16750121-16750140 | Msa0942220:intron | 15.0% |
| !! | GTTAATAATGTTATAATACA+TGG | - | chr6_3:16750828-16750847 | Msa0942220:intron | 15.0% |
| !!! | GTTTCTCTTTTAAAAAAAAA+AGG | + | chr6_3:16751352-16751371 | None:intergenic | 15.0% |
| !! | CAATCAGAAATAAAATTATT+TGG | + | chr6_3:16751444-16751463 | None:intergenic | 15.0% |
| !!! | ATAGATTTTAATTTCTATCA+CGG | - | chr6_3:16751492-16751511 | Msa0942220:CDS | 15.0% |
| !! | CTGAAAACAATAATTATTTA+TGG | + | chr6_3:16752089-16752108 | None:intergenic | 15.0% |
| !! | AGAAATTTAAATACATTCAA+AGG | - | chr6_3:16752620-16752639 | Msa0942220:intron | 15.0% |
| !! | GAAATTTAAATACATTCAAA+GGG | - | chr6_3:16752621-16752640 | Msa0942220:intron | 15.0% |
| !!! | AACTGATTTTAGTTTATTCT+TGG | + | chr6_3:16749881-16749900 | None:intergenic | 20.0% |
| !!! | GACTTTTTTTTCTTTCTAAA+TGG | + | chr6_3:16750070-16750089 | None:intergenic | 20.0% |
| !! | TAGAAAGAAAAAAAAGTCTT+TGG | - | chr6_3:16750072-16750091 | Msa0942220:CDS | 20.0% |
| !! | TTTACGTATAAATGTTTGAA+GGG | + | chr6_3:16750197-16750216 | None:intergenic | 20.0% |
| !! | ATTTACGTATAAATGTTTGA+AGG | + | chr6_3:16750198-16750217 | None:intergenic | 20.0% |
| !!! | ATTTTAATTTCTCTTCTTGT+AGG | - | chr6_3:16750415-16750434 | Msa0942220:intron | 20.0% |
| !! | TGTTTAATTCACAACATATT+TGG | - | chr6_3:16750952-16750971 | Msa0942220:intron | 20.0% |
| !!! | ACTATTGCATTTAATCATTT+TGG | - | chr6_3:16751134-16751153 | Msa0942220:CDS | 20.0% |
| !!! | GTTATTTTTTTTTAGCATAG+TGG | - | chr6_3:16751229-16751248 | Msa0942220:CDS | 20.0% |
| !!! | TGCTCAAACTTTTTTAATTT+GGG | + | chr6_3:16751321-16751340 | None:intergenic | 20.0% |
| !!! | TTGAATTTTTTAAGGTAGTT+AGG | + | chr6_3:16751964-16751983 | None:intergenic | 20.0% |
| !!! | CCTACTTTTTGAATTTTTTA+AGG | + | chr6_3:16751972-16751991 | None:intergenic | 20.0% |
| !! | CCTTAAAAAATTCAAAAAGT+AGG | - | chr6_3:16751969-16751988 | Msa0942220:intron | 20.0% |
| !! | AAATTCAAAAAGTAGGATAA+AGG | - | chr6_3:16751976-16751995 | Msa0942220:intron | 20.0% |
| !! | AAGTTATCTCCTATTAAAAT+CGG | - | chr6_3:16752515-16752534 | Msa0942220:intron | 20.0% |
| !!! | TTTTTTGGAAGAGTAATTGA+AGG | + | chr6_3:16749429-16749448 | None:intergenic | 25.0% |
| !!! | GAATGAGAAGTCATTTTTTT+TGG | + | chr6_3:16749444-16749463 | None:intergenic | 25.0% |
| ! | AAGAGGATGAAACAAAATTT+GGG | + | chr6_3:16749497-16749516 | None:intergenic | 25.0% |
| !! | TCTTAATCATGTTTTGTATG+TGG | - | chr6_3:16749576-16749595 | Msa0942220:three_prime_UTR | 25.0% |
| !!! | GGTAAGTTCTTGTTTTTAAT+TGG | - | chr6_3:16750142-16750161 | Msa0942220:intron | 25.0% |
| ! | ATAAATGTTTGAAGGGAAAA+GGG | + | chr6_3:16750190-16750209 | None:intergenic | 25.0% |
| ! | TATAAATGTTTGAAGGGAAA+AGG | + | chr6_3:16750191-16750210 | None:intergenic | 25.0% |
| ! | TCAAAGAGTTTAATTACTGA+CGG | - | chr6_3:16750238-16750257 | Msa0942220:intron | 25.0% |
| !! | CTTTTGAATATGATCCATAA+TGG | + | chr6_3:16750696-16750715 | None:intergenic | 25.0% |
| ! | GATCATATTCAAAAGAGATA+TGG | - | chr6_3:16750701-16750720 | Msa0942220:intron | 25.0% |
| !! | TCAATTAAAACAAGAGCTTT+TGG | - | chr6_3:16750728-16750747 | Msa0942220:intron | 25.0% |
| ! | AATTCATACAAGACAATTGA+TGG | - | chr6_3:16750753-16750772 | Msa0942220:intron | 25.0% |
| !!! | CATTTAATCATTTTGGTGAA+GGG | - | chr6_3:16751141-16751160 | Msa0942220:CDS | 25.0% |
| !!! | GTGCTCAAACTTTTTTAATT+TGG | + | chr6_3:16751322-16751341 | None:intergenic | 25.0% |
| ! | GCTATTATGAGATATTTAGA+AGG | + | chr6_3:16751832-16751851 | None:intergenic | 25.0% |
| !! | CACATTTCTTTGAATTTGTT+AGG | + | chr6_3:16751927-16751946 | None:intergenic | 25.0% |
| ! | TGAGTGTTTGAACAAATAAT+AGG | + | chr6_3:16752035-16752054 | None:intergenic | 25.0% |
| ! | AAAAAAAAGTTGAAATGACG+AGG | - | chr6_3:16752479-16752498 | Msa0942220:intron | 25.0% |
| ! | AAAAAAAGTTGAAATGACGA+GGG | - | chr6_3:16752480-16752499 | Msa0942220:intron | 25.0% |
| !!! | AACTGATATCCGATTTTAAT+AGG | + | chr6_3:16752527-16752546 | None:intergenic | 25.0% |
| ! | ATGTAACAAATTAAAGTGGT+TGG | + | chr6_3:16752780-16752799 | None:intergenic | 25.0% |
| ! | TTGCATGTAACAAATTAAAG+TGG | + | chr6_3:16752784-16752803 | None:intergenic | 25.0% |
| GAAGAGGATGAAACAAAATT+TGG | + | chr6_3:16749498-16749517 | None:intergenic | 30.0% | |
| TTGTTGTACAAGATGTACAA+AGG | - | chr6_3:16749535-16749554 | Msa0942220:three_prime_UTR | 30.0% | |
| ! | GTTTAATAGAAGTGCATTGT+CGG | - | chr6_3:16749945-16749964 | Msa0942220:CDS | 30.0% |
| TACTTGTGGTGAATTATCAT+CGG | + | chr6_3:16749995-16750014 | None:intergenic | 30.0% | |
| ! | GTGTAAAATAGTCTTACTTG+TGG | + | chr6_3:16750009-16750028 | None:intergenic | 30.0% |
| ACAATGTGGTGAATTATCAT+CGG | + | chr6_3:16750038-16750057 | None:intergenic | 30.0% | |
| ! | AATGGGTTTATATGACAATG+TGG | + | chr6_3:16750052-16750071 | None:intergenic | 30.0% |
| CAATTCAAGATGAACCATTA+TGG | - | chr6_3:16750679-16750698 | Msa0942220:intron | 30.0% | |
| !! | GGTCTTATTGATGTTATACA+TGG | - | chr6_3:16751008-16751027 | Msa0942220:intron | 30.0% |
| ! | TCATGACAAAGTTATGCTTT+TGG | - | chr6_3:16751070-16751089 | Msa0942220:CDS | 30.0% |
| ! | CATGACAAAGTTATGCTTTT+GGG | - | chr6_3:16751071-16751090 | Msa0942220:CDS | 30.0% |
| TGATTCTTATACACAAGACA+AGG | - | chr6_3:16751100-16751119 | Msa0942220:CDS | 30.0% | |
| !! | GCATTTAATCATTTTGGTGA+AGG | - | chr6_3:16751140-16751159 | Msa0942220:CDS | 30.0% |
| TGTCATATATATGCATACCT+TGG | + | chr6_3:16751182-16751201 | None:intergenic | 30.0% | |
| CGTTGTTCAACATCATTAAA+CGG | + | chr6_3:16751374-16751393 | None:intergenic | 30.0% | |
| TATATGTAAGACCAACACTT+TGG | - | chr6_3:16751466-16751485 | Msa0942220:CDS | 30.0% | |
| ATATGTAAGACCAACACTTT+GGG | - | chr6_3:16751467-16751486 | Msa0942220:CDS | 30.0% | |
| AAGAAAATCTCATTGCAGTT+GGG | + | chr6_3:16751545-16751564 | None:intergenic | 30.0% | |
| TAAGAAAATCTCATTGCAGT+TGG | + | chr6_3:16751546-16751565 | None:intergenic | 30.0% | |
| ! | AGATTTTCTTAGTGCTTGTT+TGG | - | chr6_3:16751555-16751574 | Msa0942220:CDS | 30.0% |
| TTGAAGTTTCTGTGTTAAAG+TGG | + | chr6_3:16751626-16751645 | None:intergenic | 30.0% | |
| TTCTCAACTTCATAAAAGCA+CGG | - | chr6_3:16751646-16751665 | Msa0942220:CDS | 30.0% | |
| GTCATGATACTACTAAGAAA+GGG | + | chr6_3:16751875-16751894 | None:intergenic | 30.0% | |
| ! | ATTGTTTTCAGATGTAGACA+TGG | - | chr6_3:16752098-16752117 | Msa0942220:intron | 30.0% |
| TGAACAATGATTACACACAT+TGG | - | chr6_3:16752135-16752154 | Msa0942220:intron | 30.0% | |
| GAACAATGATTACACACATT+GGG | - | chr6_3:16752136-16752155 | Msa0942220:intron | 30.0% | |
| ACCAGATAATAGATTTAGCA+AGG | - | chr6_3:16752223-16752242 | Msa0942220:intron | 30.0% | |
| TCCTTGCTAAATCTATTATC+TGG | + | chr6_3:16752227-16752246 | None:intergenic | 30.0% | |
| CAGAAAGTGAATATAATAGC+TGG | - | chr6_3:16752270-16752289 | Msa0942220:intron | 30.0% | |
| GTGAATATAATAGCTGGAAT+TGG | - | chr6_3:16752276-16752295 | Msa0942220:intron | 30.0% | |
| ! | TTTTAGTAGCGAATTAGCAA+CGG | + | chr6_3:16752463-16752482 | None:intergenic | 30.0% |
| GTTAAATTATTGACGAGAGA+CGG | + | chr6_3:16752559-16752578 | None:intergenic | 30.0% | |
| AGATTACTACTAATAGAGGA+TGG | + | chr6_3:16752754-16752773 | None:intergenic | 30.0% | |
| CATCTTGTACAACAAGTTCA+GGG | + | chr6_3:16749530-16749549 | None:intergenic | 35.0% | |
| ACATCTTGTACAACAAGTTC+AGG | + | chr6_3:16749531-16749550 | None:intergenic | 35.0% | |
| ! | TGTCACTAGATGCATGTTTT+TGG | + | chr6_3:16749693-16749712 | None:intergenic | 35.0% |
| AACTTGGGCTATTTATCATG+TGG | - | chr6_3:16750465-16750484 | Msa0942220:intron | 35.0% | |
| ! | GCAATCCAATTGATGATTGT+TGG | - | chr6_3:16750493-16750512 | Msa0942220:intron | 35.0% |
| CATCTCCAACAATCATCAAT+TGG | + | chr6_3:16750501-16750520 | None:intergenic | 35.0% | |
| GGATTTGGAAAAGATGCAAT+TGG | - | chr6_3:16750570-16750589 | Msa0942220:intron | 35.0% | |
| TTTGGAAAAGATGCAATTGG+TGG | - | chr6_3:16750573-16750592 | Msa0942220:intron | 35.0% | |
| ! | GATGCAATTGGTGGTAAAAA+TGG | - | chr6_3:16750582-16750601 | Msa0942220:intron | 35.0% |
| !! | ATCTACATTGTCACTGATTC+AGG | - | chr6_3:16750609-16750628 | Msa0942220:intron | 35.0% |
| TACAAGACAATTGATGGAAG+AGG | - | chr6_3:16750759-16750778 | Msa0942220:intron | 35.0% | |
| TGTTCATGATTGTGTTCCAA+CGG | - | chr6_3:16750857-16750876 | Msa0942220:intron | 35.0% | |
| AATTCCATCACCATCTGAAA+CGG | + | chr6_3:16750928-16750947 | None:intergenic | 35.0% | |
| TCTTTGTCTAATTGTCGTGA+TGG | - | chr6_3:16750987-16751006 | Msa0942220:intron | 35.0% | |
| GTGGTAAAAAAAGTCATGCA+TGG | - | chr6_3:16751248-16751267 | Msa0942220:CDS | 35.0% | |
| GGTTAGCAAAAATGTGTCTT+TGG | - | chr6_3:16751269-16751288 | Msa0942220:CDS | 35.0% | |
| TAGCAAAAATGTGTCTTTGG+AGG | - | chr6_3:16751272-16751291 | Msa0942220:CDS | 35.0% | |
| AAATCTATCTCCCAAAGTGT+TGG | + | chr6_3:16751480-16751499 | None:intergenic | 35.0% | |
| TTTCTTAGTGCTTGTTTGGA+TGG | - | chr6_3:16751559-16751578 | Msa0942220:CDS | 35.0% | |
| TGATACTACTAAGAAAGGGT+TGG | + | chr6_3:16751871-16751890 | None:intergenic | 35.0% | |
| CGTCATGATACTACTAAGAA+AGG | + | chr6_3:16751876-16751895 | None:intergenic | 35.0% | |
| !!! | CTACCTTGTTTTTGGTTCAA+TGG | + | chr6_3:16751901-16751920 | None:intergenic | 35.0% |
| !!! | TTAGGTCTCTACCTTGTTTT+TGG | + | chr6_3:16751909-16751928 | None:intergenic | 35.0% |
| !! | TAGACATGGCTATTTTCATG+TGG | - | chr6_3:16752112-16752131 | Msa0942220:intron | 35.0% |
| CATTGGGAAATGTATGCAAT+TGG | - | chr6_3:16752152-16752171 | Msa0942220:intron | 35.0% | |
| GTGCAGATTACTACTAATAG+AGG | + | chr6_3:16752758-16752777 | None:intergenic | 35.0% | |
| TCTAGGTCTAGGAGAAACTT+GGG | - | chr6_3:16750450-16750469 | Msa0942220:intron | 40.0% | |
| GGCTATTTATCATGTGGAAC+TGG | - | chr6_3:16750471-16750490 | Msa0942220:intron | 40.0% | |
| TTGGAGATGTGACCCAAATT+GGG | - | chr6_3:16750512-16750531 | Msa0942220:intron | 40.0% | |
| !! | CACAATCAGCTAGTCTTTGT+CGG | + | chr6_3:16750545-16750564 | None:intergenic | 40.0% |
| ! | AGACTAGCTGATTGTGCAAT+TGG | - | chr6_3:16750549-16750568 | Msa0942220:intron | 40.0% |
| GCTGATTGTGCAATTGGATT+TGG | - | chr6_3:16750555-16750574 | Msa0942220:intron | 40.0% | |
| ACCTTAATGTTCCTGGCTTA+GGG | + | chr6_3:16750653-16750672 | None:intergenic | 40.0% | |
| TACCTTAATGTTCCTGGCTT+AGG | + | chr6_3:16750654-16750673 | None:intergenic | 40.0% | |
| AAGCCAGGAACATTAAGGTA+TGG | - | chr6_3:16750654-16750673 | Msa0942220:intron | 40.0% | |
| GCTAGTGTTCACATTGCAAA+TGG | - | chr6_3:16750783-16750802 | Msa0942220:intron | 40.0% | |
| AGTGTTCACATTGCAAATGG+TGG | - | chr6_3:16750786-16750805 | Msa0942220:intron | 40.0% | |
| GTTCATGATTGTGTTCCAAC+GGG | - | chr6_3:16750858-16750877 | Msa0942220:intron | 40.0% | |
| TTCATGATTGTGTTCCAACG+GGG | - | chr6_3:16750859-16750878 | Msa0942220:intron | 40.0% | |
| CTAATATTTGTGTTCCCCGT+TGG | + | chr6_3:16750876-16750895 | None:intergenic | 40.0% | |
| AGAGATTCACCAGAACATAG+TGG | - | chr6_3:16750894-16750913 | Msa0942220:intron | 40.0% | |
| !!! | CACCAGAACATAGTGGATTT+TGG | - | chr6_3:16750901-16750920 | Msa0942220:intron | 40.0% |
| GTCCAAAATCCACTATGTTC+TGG | + | chr6_3:16750906-16750925 | None:intergenic | 40.0% | |
| ATGCATACCTTGGCATTCTT+TGG | + | chr6_3:16751172-16751191 | None:intergenic | 40.0% | |
| CATTGCAGTTGGGAATAAGT+GGG | + | chr6_3:16751535-16751554 | None:intergenic | 40.0% | |
| TCATTGCAGTTGGGAATAAG+TGG | + | chr6_3:16751536-16751555 | None:intergenic | 40.0% | |
| TTAGTGCTTGTTTGGATGGA+CGG | - | chr6_3:16751563-16751582 | Msa0942220:CDS | 40.0% | |
| GCTCCATTGAACCAAAAACA+AGG | - | chr6_3:16751895-16751914 | Msa0942220:intron | 40.0% | |
| TGGGAAATGTATGCAATTGG+AGG | - | chr6_3:16752155-16752174 | Msa0942220:intron | 40.0% | |
| GGGAAATGTATGCAATTGGA+GGG | - | chr6_3:16752156-16752175 | Msa0942220:intron | 40.0% | |
| CAAGGAAGTAACAAAGCATG+AGG | - | chr6_3:16752241-16752260 | Msa0942220:intron | 40.0% | |
| !! | GAGGGTGATTTGTTCTTGAA+TGG | - | chr6_3:16752305-16752324 | Msa0942220:intron | 40.0% |
| !! | GGAGCATTCTTTAGAACAAC+TGG | - | chr6_3:16752326-16752345 | Msa0942220:intron | 40.0% |
| TTCAGGGTCTTGAACTGAAG+AGG | + | chr6_3:16749514-16749533 | None:intergenic | 45.0% | |
| !! | GTAGGAGCATCAATGTCTCT+AGG | - | chr6_3:16750433-16750452 | Msa0942220:intron | 45.0% |
| GCATCAATGTCTCTAGGTCT+AGG | - | chr6_3:16750439-16750458 | Msa0942220:intron | 45.0% | |
| CTCTAGGTCTAGGAGAAACT+TGG | - | chr6_3:16750449-16750468 | Msa0942220:intron | 45.0% | |
| GTTGGAGATGTGACCCAAAT+TGG | - | chr6_3:16750511-16750530 | Msa0942220:intron | 45.0% | |
| GTCGGTTGTTCTCCCAATTT+GGG | + | chr6_3:16750527-16750546 | None:intergenic | 45.0% | |
| ! | TGTCGGTTGTTCTCCCAATT+TGG | + | chr6_3:16750528-16750547 | None:intergenic | 45.0% |
| ACCCTAAGCCAGGAACATTA+AGG | - | chr6_3:16750649-16750668 | Msa0942220:intron | 45.0% | |
| GCACCATACCTTAATGTTCC+TGG | + | chr6_3:16750660-16750679 | None:intergenic | 45.0% | |
| ! | GGATTTTGGACCGTTTCAGA+TGG | - | chr6_3:16750915-16750934 | Msa0942220:intron | 45.0% |
| TACACAAGACAAGGACATGC+AGG | - | chr6_3:16751109-16751128 | Msa0942220:CDS | 45.0% | |
| GACATAGTGCGTGTTTGGAA+TGG | + | chr6_3:16751720-16751739 | None:intergenic | 45.0% | |
| CGGGGATATCTACATAGATG+GGG | + | chr6_3:16751742-16751761 | None:intergenic | 45.0% | |
| GCGGGGATATCTACATAGAT+GGG | + | chr6_3:16751743-16751762 | None:intergenic | 45.0% | |
| TGCGGGGATATCTACATAGA+TGG | + | chr6_3:16751744-16751763 | None:intergenic | 45.0% | |
| TATGTAGATATCCCCGCAAG+TGG | - | chr6_3:16751746-16751765 | Msa0942220:CDS | 45.0% | |
| ATGTAGATATCCCCGCAAGT+GGG | - | chr6_3:16751747-16751766 | Msa0942220:CDS | 45.0% | |
| TGTTTATGGGTTCCCACTTG+CGG | + | chr6_3:16751762-16751781 | None:intergenic | 45.0% | |
| AACCCTACAATCAACAGCCA+AGG | - | chr6_3:16752185-16752204 | Msa0942220:intron | 45.0% | |
| ACCCTACAATCAACAGCCAA+GGG | - | chr6_3:16752186-16752205 | Msa0942220:intron | 45.0% | |
| ! | TCCCTTGGCTGTTGATTGTA+GGG | + | chr6_3:16752190-16752209 | None:intergenic | 45.0% |
| ! | TTCCCTTGGCTGTTGATTGT+AGG | + | chr6_3:16752191-16752210 | None:intergenic | 45.0% |
| GTGCAAGAAATCTGTTCCCT+TGG | + | chr6_3:16752205-16752224 | None:intergenic | 45.0% | |
| TAGCTGGAATTGGAGATCAG+AGG | - | chr6_3:16752286-16752305 | Msa0942220:intron | 45.0% | |
| AGCTGGAATTGGAGATCAGA+GGG | - | chr6_3:16752287-16752306 | Msa0942220:intron | 45.0% | |
| ! | AGTGATGGAACCAACAAGAG+AGG | + | chr6_3:16752405-16752424 | None:intergenic | 45.0% |
| GGTTCCATCACTACTACTTC+TGG | - | chr6_3:16752413-16752432 | Msa0942220:intron | 45.0% | |
| CACACCAGAAGTAGTAGTGA+TGG | + | chr6_3:16752420-16752439 | None:intergenic | 45.0% | |
| GATGCAGTAAACCCTAAGCC+AGG | - | chr6_3:16750639-16750658 | Msa0942220:intron | 50.0% | |
| TGGACCGTTTCAGATGGTGA+TGG | - | chr6_3:16750921-16750940 | Msa0942220:intron | 50.0% | |
| GGCTTGTCCAAAGAATGCCA+AGG | - | chr6_3:16751162-16751181 | Msa0942220:CDS | 50.0% | |
| ATGGGGACATAGTGCGTGTT+TGG | + | chr6_3:16751725-16751744 | None:intergenic | 50.0% | |
| TTTATGGGTTCCCACTTGCG+GGG | + | chr6_3:16751760-16751779 | None:intergenic | 50.0% | |
| GTTTATGGGTTCCCACTTGC+GGG | + | chr6_3:16751761-16751780 | None:intergenic | 50.0% | |
| ATGGAACCAACAAGAGAGGC+TGG | + | chr6_3:16752401-16752420 | None:intergenic | 50.0% | |
| TGGTGTGCTCTCTTGCAAGA+AGG | - | chr6_3:16752433-16752452 | Msa0942220:intron | 50.0% | |
| GGTGTGCTCTCTTGCAAGAA+GGG | - | chr6_3:16752434-16752453 | Msa0942220:intron | 50.0% | |
| GCAAGACCAGCCTCTCTTGT+TGG | - | chr6_3:16752392-16752411 | Msa0942220:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 16749403 | 16752813 | 16749403 | ID=Msa0942220;Name=Msa0942220 |
| chr6_3 | mRNA | 16749403 | 16752813 | 16749403 | ID=Msa0942220-mRNA-1;Parent=Msa0942220;Name=Msa0942220-mRNA-1;_AED=0.22;_eAED=0.22;_QI=20|1|1|1|1|1|3|344|413 |
| chr6_3 | exon | 16749403 | 16750107 | 16749403 | ID=Msa0942220-mRNA-1:exon:5078;Parent=Msa0942220-mRNA-1 |
| chr6_3 | exon | 16751033 | 16751779 | 16751033 | ID=Msa0942220-mRNA-1:exon:5077;Parent=Msa0942220-mRNA-1 |
| chr6_3 | exon | 16752660 | 16752813 | 16752660 | ID=Msa0942220-mRNA-1:exon:5076;Parent=Msa0942220-mRNA-1 |
| chr6_3 | five_prime_UTR | 16752794 | 16752813 | 16752794 | ID=Msa0942220-mRNA-1:five_prime_utr;Parent=Msa0942220-mRNA-1 |
| chr6_3 | CDS | 16752660 | 16752793 | 16752660 | ID=Msa0942220-mRNA-1:cds;Parent=Msa0942220-mRNA-1 |
| chr6_3 | CDS | 16751033 | 16751779 | 16751033 | ID=Msa0942220-mRNA-1:cds;Parent=Msa0942220-mRNA-1 |
| chr6_3 | CDS | 16749747 | 16750107 | 16749747 | ID=Msa0942220-mRNA-1:cds;Parent=Msa0942220-mRNA-1 |
| chr6_3 | three_prime_UTR | 16749403 | 16749746 | 16749403 | ID=Msa0942220-mRNA-1:three_prime_utr;Parent=Msa0942220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
