Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876940 | XP_003618787.1 | 99.257 | 404 | 3 | 0 | 10 | 413 | 1 | 404 | 0.0 | 832 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876940 | sp|Q9LTZ0|PLY11_ARATH | 72.167 | 406 | 107 | 2 | 13 | 413 | 8 | 412 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876940 | G7KN73 | 99.257 | 404 | 3 | 0 | 10 | 413 | 1 | 404 | 0.0 | 832 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019900 | Msa0876940 | 0.831420 | 1.686530e-55 | -8.615850e-47 |
| Msa0025720 | Msa0876940 | 0.803187 | 3.929756e-49 | -8.615850e-47 |
| Msa0044160 | Msa0876940 | 0.816147 | 6.425495e-52 | -8.615850e-47 |
| Msa0048510 | Msa0876940 | 0.807404 | 5.139313e-50 | -8.615850e-47 |
| Msa0050660 | Msa0876940 | 0.807257 | 5.522811e-50 | -8.615850e-47 |
| Msa0050700 | Msa0876940 | 0.810706 | 1.008734e-50 | -8.615850e-47 |
| Msa0050790 | Msa0876940 | 0.811685 | 6.185959e-51 | -8.615850e-47 |
| Msa0067330 | Msa0876940 | 0.804915 | 1.717614e-49 | -8.615850e-47 |
| Msa0075450 | Msa0876940 | 0.809046 | 2.295698e-50 | -8.615850e-47 |
| Msa0098040 | Msa0876940 | 0.803287 | 3.747156e-49 | -8.615850e-47 |
| Msa0605560 | Msa0876940 | 0.845022 | 5.262959e-59 | -8.615850e-47 |
| Msa0624900 | Msa0876940 | 0.800466 | 1.422309e-48 | -8.615850e-47 |
| Msa0644410 | Msa0876940 | 0.829088 | 6.259144e-55 | -8.615850e-47 |
| Msa0646510 | Msa0876940 | 0.805749 | 1.148812e-49 | -8.615850e-47 |
| Msa0657720 | Msa0876940 | 0.829137 | 6.090211e-55 | -8.615850e-47 |
| Msa0658640 | Msa0876940 | 0.803995 | 2.671600e-49 | -8.615850e-47 |
| Msa0675330 | Msa0876940 | 0.805187 | 1.506855e-49 | -8.615850e-47 |
| Msa0686130 | Msa0876940 | 0.802367 | 5.803229e-49 | -8.615850e-47 |
| Msa0702720 | Msa0876940 | 0.804282 | 2.328078e-49 | -8.615850e-47 |
| Msa0702790 | Msa0876940 | 0.818287 | 2.120947e-52 | -8.615850e-47 |
| Msa0714640 | Msa0876940 | 0.806161 | 9.408059e-50 | -8.615850e-47 |
| Msa0722890 | Msa0876940 | 0.809674 | 1.683689e-50 | -8.615850e-47 |
| Msa0723090 | Msa0876940 | 0.837521 | 4.948923e-57 | -8.615850e-47 |
| Msa0735780 | Msa0876940 | 0.820622 | 6.223685e-53 | -8.615850e-47 |
| Msa0738700 | Msa0876940 | 0.835187 | 1.941658e-56 | -8.615850e-47 |
| Msa0741220 | Msa0876940 | 0.837676 | 4.517427e-57 | -8.615850e-47 |
| Msa0792370 | Msa0876940 | 0.812158 | 4.879190e-51 | -8.615850e-47 |
| Msa0795870 | Msa0876940 | 0.814158 | 1.776293e-51 | -8.615850e-47 |
| Msa0819170 | Msa0876940 | 0.811078 | 8.379814e-51 | -8.615850e-47 |
| Msa0828950 | Msa0876940 | 0.823158 | 1.610582e-53 | -8.615850e-47 |
| Msa0833650 | Msa0876940 | 0.808024 | 3.794901e-50 | -8.615850e-47 |
| Msa0158860 | Msa0876940 | 0.828835 | 7.208537e-55 | -8.615850e-47 |
| Msa0174450 | Msa0876940 | 0.810760 | 9.819204e-51 | -8.615850e-47 |
| Msa0208030 | Msa0876940 | 0.813085 | 3.059276e-51 | -8.615850e-47 |
| Msa0225860 | Msa0876940 | 0.807877 | 4.077107e-50 | -8.615850e-47 |
| Msa0226310 | Msa0876940 | 0.830059 | 3.633694e-55 | -8.615850e-47 |
| Msa0235290 | Msa0876940 | 0.823172 | 1.598253e-53 | -8.615850e-47 |
| Msa0365210 | Msa0876940 | 0.811225 | 7.785928e-51 | -8.615850e-47 |
| Msa0369790 | Msa0876940 | 0.829189 | 5.915398e-55 | -8.615850e-47 |
| Msa0401970 | Msa0876940 | 0.809275 | 2.050822e-50 | -8.615850e-47 |
| Msa0402530 | Msa0876940 | 0.817893 | 2.603064e-52 | -8.615850e-47 |
| Msa0424160 | Msa0876940 | 0.806519 | 7.909076e-50 | -8.615850e-47 |
| Msa0430300 | Msa0876940 | 0.801707 | 7.930491e-49 | -8.615850e-47 |
| Msa0432140 | Msa0876940 | 0.815529 | 8.824651e-52 | -8.615850e-47 |
| Msa0457560 | Msa0876940 | 0.812112 | 4.993559e-51 | -8.615850e-47 |
| Msa0457570 | Msa0876940 | 0.804779 | 1.833405e-49 | -8.615850e-47 |
| Msa0464000 | Msa0876940 | 0.829320 | 5.499865e-55 | -8.615850e-47 |
| Msa0476650 | Msa0876940 | 0.818169 | 2.255174e-52 | -8.615850e-47 |
| Msa0251710 | Msa0876940 | 0.817503 | 3.188394e-52 | -8.615850e-47 |
| Msa0284800 | Msa0876940 | 0.800443 | 1.437946e-48 | -8.615850e-47 |
| Msa0290720 | Msa0876940 | 0.822794 | 1.957779e-53 | -8.615850e-47 |
| Msa0304570 | Msa0876940 | 0.834134 | 3.573315e-56 | -8.615850e-47 |
| Msa0304680 | Msa0876940 | 0.849431 | 3.247473e-60 | -8.615850e-47 |
| Msa0307670 | Msa0876940 | 0.809679 | 1.679158e-50 | -8.615850e-47 |
| Msa0313900 | Msa0876940 | 0.812513 | 4.081973e-51 | -8.615850e-47 |
| Msa0330520 | Msa0876940 | 0.828227 | 1.010973e-54 | -8.615850e-47 |
| Msa0340500 | Msa0876940 | 0.815372 | 9.563649e-52 | -8.615850e-47 |
| Msa0509550 | Msa0876940 | 0.830669 | 2.579015e-55 | -8.615850e-47 |
| Msa0513970 | Msa0876940 | 0.825601 | 4.289843e-54 | -8.615850e-47 |
| Msa0520990 | Msa0876940 | 0.820731 | 5.873636e-53 | -8.615850e-47 |
| Msa0528570 | Msa0876940 | 0.861939 | 7.209567e-64 | -8.615850e-47 |
| Msa0548470 | Msa0876940 | 0.826266 | 2.980300e-54 | -8.615850e-47 |
| Msa0550050 | Msa0876940 | 0.830435 | 2.942352e-55 | -8.615850e-47 |
| Msa0557460 | Msa0876940 | 0.848464 | 6.028875e-60 | -8.615850e-47 |
| Msa0568800 | Msa0876940 | 0.802460 | 5.551754e-49 | -8.615850e-47 |
| Msa0580370 | Msa0876940 | 0.814526 | 1.473362e-51 | -8.615850e-47 |
| Msa0583360 | Msa0876940 | -0.813788 | 2.143909e-51 | -8.615850e-47 |
| Msa0585020 | Msa0876940 | 0.801328 | 9.481192e-49 | -8.615850e-47 |
| Msa0597270 | Msa0876940 | 0.809247 | 2.079352e-50 | -8.615850e-47 |
| Msa0859290 | Msa0876940 | 0.832212 | 1.075514e-55 | -8.615850e-47 |
| Msa0876930 | Msa0876940 | 0.941401 | 4.434729e-101 | -8.615850e-47 |
| Msa0876940 | Msa0942210 | 0.919365 | 4.930245e-87 | -8.615850e-47 |
| Msa0876940 | Msa0942220 | 0.934441 | 4.022259e-96 | -8.615850e-47 |
| Msa0876940 | Msa0979180 | 0.910137 | 2.620641e-82 | -8.615850e-47 |
| Msa0876940 | Msa1012800 | 0.817379 | 3.400865e-52 | -8.615850e-47 |
| Msa0876940 | Msa1042160 | 0.809145 | 2.186541e-50 | -8.615850e-47 |
| Msa0876940 | Msa1042190 | 0.812885 | 3.385276e-51 | -8.615850e-47 |
| Msa0876940 | Msa1081390 | 0.804428 | 2.170243e-49 | -8.615850e-47 |
| Msa0876940 | Msa1106590 | 0.800349 | 1.502472e-48 | -8.615850e-47 |
| Msa0876940 | Msa1116220 | 0.807114 | 5.920038e-50 | -8.615850e-47 |
| Msa0876940 | Msa1132840 | 0.812771 | 3.585814e-51 | -8.615850e-47 |
| Msa0876940 | Msa1155170 | -0.818792 | 1.628859e-52 | -8.615850e-47 |
| Msa0876940 | Msa1167470 | 0.800722 | 1.261330e-48 | -8.615850e-47 |
| Msa0876940 | Msa1175180 | 0.818192 | 2.228652e-52 | -8.615850e-47 |
| Msa0876940 | Msa1186020 | 0.803305 | 3.714089e-49 | -8.615850e-47 |
| Msa0876940 | Msa1203440 | 0.810316 | 1.224733e-50 | -8.615850e-47 |
| Msa0876940 | Msa1206460 | 0.827875 | 1.228455e-54 | -8.615850e-47 |
| Msa0876940 | Msa1214310 | 0.824855 | 6.436541e-54 | -8.615850e-47 |
| Msa0876940 | Msa1225860 | -0.812347 | 4.437062e-51 | -8.615850e-47 |
| Msa0876940 | Msa1226520 | 0.800297 | 1.539745e-48 | -8.615850e-47 |
| Msa0876940 | Msa1277150 | 0.842975 | 1.861983e-58 | -8.615850e-47 |
| Msa0876940 | Msa1298220 | 0.830123 | 3.505562e-55 | -8.615850e-47 |
| Msa0876940 | Msa1316330 | 0.805080 | 1.586701e-49 | -8.615850e-47 |
| Msa0876940 | Msa1341840 | 0.842974 | 1.863442e-58 | -8.615850e-47 |
| Msa0876940 | Msa1356600 | -0.801589 | 8.383834e-49 | -8.615850e-47 |
| Msa0876940 | Msa1390440 | 0.830622 | 2.648056e-55 | -8.615850e-47 |
| Msa0876940 | Msa1409410 | 0.808112 | 3.634899e-50 | -8.615850e-47 |
| Msa0876940 | Msa1415540 | 0.855448 | 6.265774e-62 | -8.615850e-47 |
| Msa0876940 | Msa1417380 | 0.819113 | 1.377031e-52 | -8.615850e-47 |
| Msa0876940 | Msa1440630 | 0.813712 | 2.228261e-51 | -8.615850e-47 |
| Msa0876940 | Msa1449900 | 0.813931 | 1.993318e-51 | -8.615850e-47 |
| Msa0876940 | Msa1461370 | 0.826207 | 3.078352e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876940 | MtrunA17_Chr6g0458201 | 99.257 | 404 | 3 | 0 | 10 | 413 | 1 | 404 | 0.0 | 832 |
| Msa0876940 | MtrunA17_Chr4g0058051 | 80.890 | 382 | 72 | 1 | 33 | 413 | 26 | 407 | 0.0 | 635 |
| Msa0876940 | MtrunA17_Chr3g0116521 | 75.931 | 403 | 97 | 0 | 11 | 413 | 4 | 406 | 0.0 | 617 |
| Msa0876940 | MtrunA17_Chr3g0123321 | 75.448 | 391 | 93 | 2 | 23 | 413 | 16 | 403 | 0.0 | 587 |
| Msa0876940 | MtrunA17_Chr1g0169731 | 68.146 | 383 | 122 | 0 | 31 | 413 | 68 | 450 | 0.0 | 565 |
| Msa0876940 | MtrunA17_Chr7g0237761 | 66.062 | 386 | 131 | 0 | 28 | 413 | 59 | 444 | 0.0 | 550 |
| Msa0876940 | MtrunA17_Chr3g0123331 | 67.332 | 401 | 125 | 4 | 15 | 413 | 10 | 406 | 0.0 | 532 |
| Msa0876940 | MtrunA17_Chr1g0180381 | 62.760 | 384 | 136 | 1 | 35 | 411 | 34 | 417 | 0.0 | 518 |
| Msa0876940 | MtrunA17_Chr1g0210321 | 64.380 | 379 | 132 | 1 | 36 | 411 | 35 | 413 | 0.0 | 518 |
| Msa0876940 | MtrunA17_Chr7g0264891 | 63.757 | 378 | 136 | 1 | 35 | 411 | 35 | 412 | 7.81e-179 | 506 |
| Msa0876940 | MtrunA17_Chr4g0060211 | 57.487 | 374 | 154 | 3 | 43 | 413 | 63 | 434 | 8.48e-160 | 457 |
| Msa0876940 | MtrunA17_Chr5g0416061 | 56.250 | 368 | 160 | 1 | 47 | 413 | 82 | 449 | 2.88e-153 | 441 |
| Msa0876940 | MtrunA17_Chr8g0362561 | 53.616 | 401 | 170 | 4 | 29 | 413 | 55 | 455 | 2.85e-151 | 436 |
| Msa0876940 | MtrunA17_Chr4g0075231 | 60.857 | 350 | 133 | 3 | 65 | 413 | 39 | 385 | 6.82e-151 | 432 |
| Msa0876940 | MtrunA17_Chr5g0416041 | 55.928 | 388 | 162 | 3 | 35 | 413 | 62 | 449 | 7.20e-150 | 432 |
| Msa0876940 | MtrunA17_Chr6g0452861 | 50.115 | 435 | 189 | 5 | 3 | 413 | 23 | 453 | 5.13e-146 | 422 |
| Msa0876940 | MtrunA17_Chr2g0288921 | 59.143 | 350 | 139 | 3 | 65 | 413 | 63 | 409 | 5.31e-146 | 421 |
| Msa0876940 | MtrunA17_Chr7g0216581 | 58.192 | 354 | 147 | 1 | 61 | 413 | 98 | 451 | 9.82e-143 | 414 |
| Msa0876940 | MtrunA17_Chr8g0373761 | 45.480 | 354 | 185 | 6 | 65 | 413 | 42 | 392 | 3.26e-98 | 298 |
| Msa0876940 | MtrunA17_Chr3g0089181 | 45.198 | 354 | 186 | 6 | 65 | 413 | 23 | 373 | 9.06e-97 | 294 |
| Msa0876940 | MtrunA17_Chr8g0373721 | 45.198 | 354 | 186 | 6 | 65 | 413 | 42 | 392 | 1.20e-96 | 294 |
| Msa0876940 | MtrunA17_Chr8g0373731 | 45.198 | 354 | 186 | 6 | 65 | 413 | 42 | 392 | 5.95e-91 | 280 |
| Msa0876940 | MtrunA17_Chr8g0373701 | 43.503 | 354 | 192 | 6 | 65 | 413 | 97 | 447 | 7.63e-89 | 276 |
| Msa0876940 | MtrunA17_Chr5g0403391 | 42.373 | 354 | 196 | 6 | 65 | 413 | 41 | 391 | 1.24e-83 | 261 |
| Msa0876940 | MtrunA17_Chr4g0031851 | 45.955 | 309 | 161 | 5 | 104 | 409 | 28 | 333 | 1.59e-83 | 259 |
| Msa0876940 | MtrunA17_Chr5g0414541 | 42.373 | 354 | 196 | 6 | 65 | 413 | 41 | 391 | 2.25e-83 | 260 |
| Msa0876940 | MtrunA17_Chr5g0403481 | 42.090 | 354 | 197 | 6 | 65 | 413 | 41 | 391 | 6.18e-83 | 259 |
| Msa0876940 | MtrunA17_Chr5g0403461 | 42.090 | 354 | 197 | 6 | 65 | 413 | 41 | 391 | 6.18e-83 | 259 |
| Msa0876940 | MtrunA17_Chr5g0403491 | 42.090 | 354 | 197 | 6 | 65 | 413 | 41 | 391 | 6.18e-83 | 259 |
| Msa0876940 | MtrunA17_Chr5g0403411 | 42.090 | 354 | 197 | 6 | 65 | 413 | 41 | 391 | 1.87e-80 | 253 |
| Msa0876940 | MtrunA17_Chr1g0183941 | 43.657 | 268 | 147 | 3 | 140 | 405 | 1 | 266 | 3.15e-68 | 217 |
| Msa0876940 | MtrunA17_Chr3g0113551 | 76.984 | 126 | 29 | 0 | 210 | 335 | 161 | 286 | 1.56e-67 | 216 |
| Msa0876940 | MtrunA17_Chr6g0481851 | 40.433 | 277 | 109 | 6 | 98 | 373 | 6 | 227 | 4.60e-52 | 174 |
| Msa0876940 | MtrunA17_Chr1g0212931 | 38.699 | 292 | 153 | 7 | 78 | 368 | 9 | 275 | 6.52e-50 | 171 |
| Msa0876940 | MtrunA17_Chr2g0288901 | 50.641 | 156 | 72 | 3 | 259 | 413 | 5 | 156 | 4.65e-48 | 161 |
| Msa0876940 | MtrunA17_Chr2g0288911 | 63.115 | 122 | 44 | 1 | 140 | 260 | 1 | 122 | 3.79e-43 | 147 |
| Msa0876940 | MtrunA17_Chr1g0182021 | 36.491 | 285 | 157 | 4 | 84 | 368 | 64 | 324 | 5.95e-40 | 146 |
| Msa0876940 | MtrunA17_Chr1g0183951 | 37.778 | 90 | 53 | 2 | 38 | 126 | 17 | 104 | 1.85e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876940 | AT3G27400.2 | 72.167 | 406 | 107 | 2 | 13 | 413 | 12 | 416 | 0.0 | 613 |
| Msa0876940 | AT3G27400.1 | 72.167 | 406 | 107 | 2 | 13 | 413 | 8 | 412 | 0.0 | 612 |
| Msa0876940 | AT5G63180.1 | 72.953 | 403 | 106 | 2 | 14 | 413 | 30 | 432 | 0.0 | 612 |
| Msa0876940 | AT1G67750.1 | 74.036 | 389 | 99 | 1 | 25 | 413 | 22 | 408 | 0.0 | 606 |
| Msa0876940 | AT4G24780.2 | 72.059 | 408 | 110 | 3 | 9 | 413 | 2 | 408 | 0.0 | 594 |
| Msa0876940 | AT4G24780.1 | 72.059 | 408 | 110 | 3 | 9 | 413 | 2 | 408 | 0.0 | 594 |
| Msa0876940 | AT4G13710.1 | 66.667 | 393 | 127 | 1 | 25 | 413 | 78 | 470 | 0.0 | 587 |
| Msa0876940 | AT4G13710.2 | 66.667 | 393 | 127 | 1 | 25 | 413 | 59 | 451 | 0.0 | 586 |
| Msa0876940 | AT3G07010.1 | 67.233 | 412 | 128 | 1 | 9 | 413 | 5 | 416 | 0.0 | 572 |
| Msa0876940 | AT3G07010.2 | 71.088 | 377 | 109 | 0 | 37 | 413 | 7 | 383 | 0.0 | 566 |
| Msa0876940 | AT1G04680.1 | 67.617 | 386 | 121 | 1 | 32 | 413 | 44 | 429 | 0.0 | 554 |
| Msa0876940 | AT3G24670.1 | 68.586 | 382 | 120 | 0 | 32 | 413 | 59 | 440 | 0.0 | 550 |
| Msa0876940 | AT3G24230.1 | 65.026 | 386 | 130 | 2 | 32 | 413 | 67 | 451 | 0.0 | 543 |
| Msa0876940 | AT5G48900.1 | 68.848 | 382 | 119 | 0 | 32 | 413 | 36 | 417 | 0.0 | 534 |
| Msa0876940 | AT4G13210.2 | 68.407 | 383 | 120 | 1 | 32 | 413 | 56 | 438 | 0.0 | 526 |
| Msa0876940 | AT4G13210.1 | 68.407 | 383 | 120 | 1 | 32 | 413 | 19 | 401 | 0.0 | 525 |
| Msa0876940 | AT3G53190.1 | 61.259 | 413 | 143 | 3 | 10 | 405 | 2 | 414 | 1.99e-180 | 511 |
| Msa0876940 | AT5G04310.3 | 62.402 | 383 | 131 | 1 | 36 | 405 | 53 | 435 | 1.07e-170 | 486 |
| Msa0876940 | AT5G04310.1 | 62.402 | 383 | 131 | 1 | 36 | 405 | 53 | 435 | 1.94e-169 | 485 |
| Msa0876940 | AT5G04310.2 | 62.402 | 383 | 131 | 1 | 36 | 405 | 53 | 435 | 1.94e-169 | 485 |
| Msa0876940 | AT3G54920.1 | 59.740 | 385 | 131 | 4 | 36 | 405 | 37 | 412 | 2.92e-168 | 481 |
| Msa0876940 | AT5G55720.1 | 56.608 | 401 | 159 | 4 | 14 | 413 | 6 | 392 | 5.14e-167 | 474 |
| Msa0876940 | AT1G14420.1 | 54.211 | 380 | 166 | 2 | 42 | 413 | 80 | 459 | 8.83e-151 | 435 |
| Msa0876940 | AT1G11920.1 | 58.000 | 350 | 144 | 3 | 65 | 413 | 37 | 384 | 8.89e-147 | 422 |
| Msa0876940 | AT5G15110.1 | 55.211 | 355 | 157 | 2 | 61 | 413 | 118 | 472 | 2.56e-145 | 422 |
| Msa0876940 | AT3G01270.1 | 56.056 | 355 | 154 | 2 | 61 | 413 | 121 | 475 | 6.74e-145 | 421 |
| Msa0876940 | AT4G22090.1 | 57.429 | 350 | 145 | 3 | 65 | 413 | 47 | 393 | 8.16e-145 | 417 |
| Msa0876940 | AT4G22080.1 | 56.857 | 350 | 147 | 3 | 65 | 413 | 47 | 393 | 5.98e-142 | 410 |
| Msa0876940 | AT2G02720.1 | 53.521 | 355 | 159 | 1 | 65 | 413 | 101 | 455 | 1.29e-139 | 407 |
| Msa0876940 | AT1G30350.1 | 52.010 | 398 | 158 | 5 | 16 | 413 | 4 | 368 | 6.88e-139 | 402 |
| Msa0876940 | AT5G09280.1 | 47.984 | 248 | 127 | 2 | 98 | 344 | 6 | 252 | 3.05e-77 | 241 |
| Msa0876940 | AT3G55140.1 | 39.510 | 286 | 147 | 7 | 84 | 368 | 16 | 276 | 4.92e-50 | 172 |
| Msa0876940 | AT3G09540.1 | 36.111 | 288 | 158 | 5 | 82 | 368 | 61 | 323 | 2.48e-43 | 155 |
| Msa0876940 | AT3G55140.2 | 39.044 | 251 | 132 | 6 | 119 | 368 | 22 | 252 | 1.14e-41 | 149 |
| Msa0876940 | AT3G09540.3 | 35.764 | 288 | 155 | 6 | 82 | 368 | 61 | 319 | 2.59e-41 | 150 |
| Msa0876940 | AT3G09540.2 | 35.510 | 245 | 134 | 4 | 82 | 326 | 61 | 281 | 8.35e-36 | 133 |
Find 98 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTAATTCACAACATATT+TGG | 0.148343 | 6_1:-15560721 | Msa0876940:CDS |
| TGTCGGTTGTTCTCCCAATT+TGG | 0.183698 | 6_1:+15561148 | None:intergenic |
| GAAGAGGATGAAACAAAATT+TGG | 0.190078 | 6_1:+15562178 | None:intergenic |
| CACCAGAACATAGTGGATTT+TGG | 0.212123 | 6_1:-15560772 | Msa0876940:CDS |
| ATACATACCTTGGCATTCTT+TGG | 0.236926 | 6_1:+15560504 | None:intergenic |
| ATCTACATTGTCACTGATTC+AGG | 0.262745 | 6_1:-15561064 | Msa0876940:CDS |
| TCAATTAAAACAAGAGCTTT+TGG | 0.287323 | 6_1:-15560945 | Msa0876940:CDS |
| TCATGACAAAGTTATGCTTT+TGG | 0.300199 | 6_1:-15560603 | Msa0876940:CDS |
| GCTGATTGTGCAATTGGATT+TGG | 0.305034 | 6_1:-15561118 | Msa0876940:CDS |
| GTCGGTTGTTCTCCCAATTT+GGG | 0.308400 | 6_1:+15561149 | None:intergenic |
| CAATTCAAGATGAACCATTA+TGG | 0.310393 | 6_1:-15560994 | Msa0876940:CDS |
| TCCTTGCTAAATCTATTATC+TGG | 0.317797 | 6_1:+15559478 | None:intergenic |
| TACCTTAATGTTCCTGGCTT+AGG | 0.318773 | 6_1:+15561022 | None:intergenic |
| GTTGGAGATGTGACCCAAAT+TGG | 0.323275 | 6_1:-15561162 | Msa0876940:CDS |
| GGTTCCATCACTACTACTTC+TGG | 0.332285 | 6_1:-15559289 | Msa0876940:CDS |
| GCACCATACCTTAATGTTCC+TGG | 0.337883 | 6_1:+15561016 | None:intergenic |
| TTCCCTTGGCTGTTGATTGT+AGG | 0.338196 | 6_1:+15559514 | None:intergenic |
| ACCTTAATGTTCCTGGCTTA+GGG | 0.354026 | 6_1:+15561023 | None:intergenic |
| ACATCTTGTACAACAAGTTC+AGG | 0.356255 | 6_1:+15562145 | None:intergenic |
| AGACTAGCTGATTGTGCAAT+TGG | 0.358822 | 6_1:-15561124 | Msa0876940:CDS |
| ACCCTAAGCCAGGAACATTA+AGG | 0.369613 | 6_1:-15561024 | Msa0876940:CDS |
| GTGAATATAATAGCTGGAAT+TGG | 0.370547 | 6_1:-15559426 | Msa0876940:CDS |
| CACAATCAGCTAGTCTTTGT+CGG | 0.381751 | 6_1:+15561131 | None:intergenic |
| GCAAGACCAGCCTCTCTTGT+TGG | 0.384223 | 6_1:-15559310 | Msa0876940:CDS |
| GAGGGTGATTTGTTCTTGAA+TGG | 0.394829 | 6_1:-15559397 | Msa0876940:CDS |
| CTCTAGGTCTAGGAGAAACT+TGG | 0.396252 | 6_1:-15561224 | Msa0876940:CDS |
| AAGAGGATGAAACAAAATTT+GGG | 0.396495 | 6_1:+15562179 | None:intergenic |
| GGCTATTTATCATGTGGAAC+TGG | 0.405816 | 6_1:-15561202 | Msa0876940:CDS |
| GTTCATGATTGTGTTCCAAC+GGG | 0.420422 | 6_1:-15560815 | Msa0876940:CDS |
| GGAGCATTCTTTAGACAAAC+TGG | 0.421504 | 6_1:-15559376 | Msa0876940:CDS |
| TCCCTTGGCTGTTGATTGTA+GGG | 0.426471 | 6_1:+15559515 | None:intergenic |
| AATTCATACAAGACAATTGA+TGG | 0.427271 | 6_1:-15560920 | Msa0876940:CDS |
| AGAAATTTAAATACATTCAA+AGG | 0.435853 | 6_1:-15559075 | Msa0876940:three_prime_UTR |
| GATCATATTCAAAAGAGATA+TGG | 0.439191 | 6_1:-15560972 | Msa0876940:CDS |
| GCAATCCAATTGATGATTGT+TGG | 0.439325 | 6_1:-15561180 | Msa0876940:CDS |
| TGTTACCTCTATATAGTCAA+TGG | 0.439359 | 6_1:+15558848 | None:intergenic |
| CATCTCCAACAATCATCAAT+TGG | 0.440002 | 6_1:+15561175 | None:intergenic |
| GAACAATGATTACACACATT+GGG | 0.453403 | 6_1:-15559566 | Msa0876940:CDS |
| TAAATGTATTCCGCAGTTAG+TGG | 0.456499 | 6_1:-15558815 | Msa0876940:three_prime_UTR |
| GTTAATAATGTTATAATACA+TGG | 0.461906 | 6_1:-15560845 | Msa0876940:CDS |
| GGATTTGGAAAAGATGCAAT+TGG | 0.464882 | 6_1:-15561103 | Msa0876940:CDS |
| CAGAAAGTGAATATAATAGC+TGG | 0.465031 | 6_1:-15559432 | Msa0876940:CDS |
| GTCCAAAATCCACTATGTTC+TGG | 0.466293 | 6_1:+15560770 | None:intergenic |
| ATGTAACAAATTAAAGTGGT+TGG | 0.471600 | 6_1:+15558927 | None:intergenic |
| TGTAACAAATTAAAGTGGTT+GGG | 0.474022 | 6_1:+15558928 | None:intergenic |
| GTGCAAGAAATCTGTTCCCT+TGG | 0.476596 | 6_1:+15559500 | None:intergenic |
| GAAATTTAAATACATTCAAA+GGG | 0.484119 | 6_1:-15559074 | Msa0876940:three_prime_UTR |
| CTAATATTTGTGTTCCCCGT+TGG | 0.486392 | 6_1:+15560800 | None:intergenic |
| GCATCAATGTCTCTAGGTCT+AGG | 0.489694 | 6_1:-15561234 | Msa0876940:CDS |
| TTGGAGATGTGACCCAAATT+GGG | 0.502512 | 6_1:-15561161 | Msa0876940:CDS |
| GGTCTTATTGATGTTATACA+TGG | 0.506577 | 6_1:-15560665 | Msa0876940:CDS |
| TCCAACCATTGACTATATAG+AGG | 0.510647 | 6_1:-15558853 | Msa0876940:three_prime_UTR |
| TTGCATGTAACAAATTAAAG+TGG | 0.514022 | 6_1:+15558923 | None:intergenic |
| GGTGTGCTCACTTGCAAGAA+GGG | 0.516097 | 6_1:-15559268 | Msa0876940:CDS |
| TGGTGTGCTCACTTGCAAGA+AGG | 0.516822 | 6_1:-15559269 | Msa0876940:CDS |
| AGCTGGAATTGGAGATCAGA+GGG | 0.527960 | 6_1:-15559415 | Msa0876940:CDS |
| GGGCAGATTACTACTAATAG+AGG | 0.539038 | 6_1:+15558948 | None:intergenic |
| CATTGGGAAATGTATGCAAT+TGG | 0.540092 | 6_1:-15559550 | Msa0876940:CDS |
| TCTTTGTCTAATTGTCGAGA+TGG | 0.541742 | 6_1:-15560686 | Msa0876940:CDS |
| ATGGAACCAACAAGAGAGGC+TGG | 0.542918 | 6_1:+15559304 | None:intergenic |
| TTACATGCAATATATTTCAT+CGG | 0.543000 | 6_1:-15558910 | Msa0876940:three_prime_UTR |
| TGTTCATGATTGTGTTCCAA+CGG | 0.543560 | 6_1:-15560816 | Msa0876940:CDS |
| GTAGGAGCATCAATGTCTCT+AGG | 0.545125 | 6_1:-15561240 | Msa0876940:intron |
| TGAACAATGATTACACACAT+TGG | 0.549687 | 6_1:-15559567 | Msa0876940:CDS |
| GTGACCTGCATGTCCTTGTC+CGG | 0.551806 | 6_1:+15560560 | None:intergenic |
| GAGAATTCTATAAGTAGTTG+TGG | 0.553941 | 6_1:+15558876 | None:intergenic |
| ACCTCTATATAGTCAATGGT+TGG | 0.558813 | 6_1:+15558852 | None:intergenic |
| TACACCGGACAAGGACATGC+AGG | 0.561475 | 6_1:-15560564 | Msa0876940:CDS |
| TACAAGACAATTGATGGAAG+AGG | 0.566366 | 6_1:-15560914 | Msa0876940:CDS |
| AATTCCATCACCATCTGAAA+CGG | 0.566606 | 6_1:+15560748 | None:intergenic |
| ACCAGATAATAGATTTAGCA+AGG | 0.568377 | 6_1:-15559479 | Msa0876940:CDS |
| AACCCTACAATCAACAGCCA+AGG | 0.572050 | 6_1:-15559517 | Msa0876940:CDS |
| AACTTGGGCTATTTATCATG+TGG | 0.574554 | 6_1:-15561208 | Msa0876940:CDS |
| TGGACCGTTTCAGATGGTGA+TGG | 0.575388 | 6_1:-15560752 | Msa0876940:CDS |
| AAGCCAGGAACATTAAGGTA+TGG | 0.578760 | 6_1:-15561019 | Msa0876940:CDS |
| TTCAGGGTCTTGAACTGAAG+AGG | 0.579107 | 6_1:+15562162 | None:intergenic |
| GCTAGTGTTCACATTGCAAA+TGG | 0.586396 | 6_1:-15560890 | Msa0876940:CDS |
| ACATAGTGATTCTTATACAC+CGG | 0.587740 | 6_1:-15560579 | Msa0876940:CDS |
| TGGGAAATGTATGCAATTGG+TGG | 0.593671 | 6_1:-15559547 | Msa0876940:CDS |
| CATCTTGTACAACAAGTTCA+GGG | 0.601679 | 6_1:+15562146 | None:intergenic |
| CACACCAGAAGTAGTAGTGA+TGG | 0.602959 | 6_1:+15559285 | None:intergenic |
| GATGCAGTAAACCCTAAGCC+AGG | 0.603794 | 6_1:-15561034 | Msa0876940:CDS |
| AGATTACTACTAATAGAGGA+TGG | 0.619460 | 6_1:+15558952 | None:intergenic |
| TTTGGAAAAGATGCAATTGG+TGG | 0.625951 | 6_1:-15561100 | Msa0876940:CDS |
| AAAATAAATTGTGATATGAG+TGG | 0.626274 | 6_1:-15558761 | None:intergenic |
| TGATTCTTATACACCGGACA+AGG | 0.630256 | 6_1:-15560573 | Msa0876940:CDS |
| ACCCTACAATCAACAGCCAA+GGG | 0.631197 | 6_1:-15559516 | Msa0876940:CDS |
| TCTAGGTCTAGGAGAAACTT+GGG | 0.631443 | 6_1:-15561223 | Msa0876940:CDS |
| AGAGACTCACCAGAACATAG+TGG | 0.640397 | 6_1:-15560779 | Msa0876940:CDS |
| AGTGTTCACATTGCAAATGG+TGG | 0.646316 | 6_1:-15560887 | Msa0876940:CDS |
| TATATTTCATCGGTTAACAG+TGG | 0.648356 | 6_1:-15558900 | Msa0876940:three_prime_UTR |
| TAGCTGGAATTGGAGATCAG+AGG | 0.658304 | 6_1:-15559416 | Msa0876940:CDS |
| GGGAAATGTATGCAATTGGT+GGG | 0.659423 | 6_1:-15559546 | Msa0876940:CDS |
| AGTGATGGAACCAACAAGAG+AGG | 0.669990 | 6_1:+15559300 | None:intergenic |
| TTCATGATTGTGTTCCAACG+GGG | 0.684589 | 6_1:-15560814 | Msa0876940:CDS |
| TTGTTGTACAAGATGTACAA+AGG | 0.691137 | 6_1:-15562138 | Msa0876940:intron |
| TCATTGATGAAAATTAGAGA+CGG | 0.701248 | 6_1:+15559146 | None:intergenic |
| GGCTTGTCCAAAGAATGCCA+AGG | 0.703891 | 6_1:-15560511 | Msa0876940:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATAATATATAATTAACT+TGG | + | chr6_1:15559683-15559702 | None:intergenic | 10.0% |
| !!! | CATTTTTTTTTTTATGTTTA+TGG | + | chr6_1:15561105-15561124 | None:intergenic | 10.0% |
| !! | AAATTCTATTATTGAAAATT+TGG | - | chr6_1:15561126-15561145 | Msa0876940:CDS | 10.0% |
| !!! | ACTTTTTTTTCTTTCTAAAT+GGG | + | chr6_1:15559428-15559447 | None:intergenic | 15.0% |
| !!! | TTCTTGTTTGTTTTTTTAAA+AGG | - | chr6_1:15559480-15559499 | Msa0876940:CDS | 15.0% |
| !! | GTTAATAATGTTATAATACA+TGG | - | chr6_1:15560187-15560206 | Msa0876940:intron | 15.0% |
| !! | CAATCACAAATAAAATTATT+TGG | + | chr6_1:15560773-15560792 | None:intergenic | 15.0% |
| !!! | ATAGAATTTAATTTCTATCA+CGG | - | chr6_1:15560821-15560840 | Msa0876940:CDS | 15.0% |
| !! | CTGAAAACAATAATTATTTA+TGG | + | chr6_1:15561419-15561438 | None:intergenic | 15.0% |
| !!! | TGATTTAACTTTTTTAATAG+TGG | - | chr6_1:15561906-15561925 | Msa0876940:intron | 15.0% |
| !! | AGAAATTTAAATACATTCAA+AGG | - | chr6_1:15561957-15561976 | Msa0876940:intron | 15.0% |
| !! | GAAATTTAAATACATTCAAA+GGG | - | chr6_1:15561958-15561977 | Msa0876940:intron | 15.0% |
| !!! | AACTGATTTTAGTTTATTCT+TGG | + | chr6_1:15559240-15559259 | None:intergenic | 20.0% |
| !!! | GACTTTTTTTTCTTTCTAAA+TGG | + | chr6_1:15559429-15559448 | None:intergenic | 20.0% |
| !! | TAGAAAGAAAAAAAAGTCTT+TGG | - | chr6_1:15559431-15559450 | Msa0876940:CDS | 20.0% |
| !! | TTTACGTATAAATGTTTGAA+GGG | + | chr6_1:15559556-15559575 | None:intergenic | 20.0% |
| !! | ATTTACGTATAAATGTTTGA+AGG | + | chr6_1:15559557-15559576 | None:intergenic | 20.0% |
| !!! | ATTTTAATTTCTCTTCTTGT+AGG | - | chr6_1:15559774-15559793 | Msa0876940:intron | 20.0% |
| !! | TGTTTAATTCACAACATATT+TGG | - | chr6_1:15560311-15560330 | Msa0876940:intron | 20.0% |
| !!! | ACTATTGCTTTTAATCATTT+TGG | - | chr6_1:15560493-15560512 | Msa0876940:intron | 20.0% |
| !!! | TCACTATTTTTTTTAGCATA+TGG | - | chr6_1:15560558-15560577 | Msa0876940:CDS | 20.0% |
| !! | ATATGGTAAAAAAAAAGTCA+TGG | - | chr6_1:15560575-15560594 | Msa0876940:CDS | 20.0% |
| !!! | TTGAATTTTTTAAGGTAGTT+AGG | + | chr6_1:15561294-15561313 | None:intergenic | 20.0% |
| !!! | CCTACTTTTTGAATTTTTTA+AGG | + | chr6_1:15561302-15561321 | None:intergenic | 20.0% |
| !! | CCTTAAAAAATTCAAAAAGT+AGG | - | chr6_1:15561299-15561318 | Msa0876940:intron | 20.0% |
| !! | AAATTCAAAAAGTAGGATAA+AGG | - | chr6_1:15561306-15561325 | Msa0876940:intron | 20.0% |
| !! | TAAAAAAAGTTGAAATGATG+AGG | - | chr6_1:15561808-15561827 | Msa0876940:intron | 20.0% |
| !! | AAAAAAAGTTGAAATGATGA+GGG | - | chr6_1:15561809-15561828 | Msa0876940:intron | 20.0% |
| !!! | AACTGATCTTCAATTTTAAT+CGG | + | chr6_1:15561857-15561876 | None:intergenic | 20.0% |
| !! | TTACATGCAATATATTTCAT+CGG | - | chr6_1:15562122-15562141 | Msa0876940:intron | 20.0% |
| !!! | TTTTTTGGAAGAGTAATTGA+AGG | + | chr6_1:15558788-15558807 | None:intergenic | 25.0% |
| !!! | GAATGAGAAGTCATTTTTTT+TGG | + | chr6_1:15558803-15558822 | None:intergenic | 25.0% |
| ! | AAGAGGATGAAACAAAATTT+GGG | + | chr6_1:15558856-15558875 | None:intergenic | 25.0% |
| !! | TCTTAATCATGTTTTGTATG+TGG | - | chr6_1:15558935-15558954 | Msa0876940:three_prime_UTR | 25.0% |
| !!! | GGTAAGTTCTTGTTTTTAAT+TGG | - | chr6_1:15559501-15559520 | Msa0876940:CDS | 25.0% |
| ! | ATAAATGTTTGAAGGGAAAA+GGG | + | chr6_1:15559549-15559568 | None:intergenic | 25.0% |
| ! | TATAAATGTTTGAAGGGAAA+AGG | + | chr6_1:15559550-15559569 | None:intergenic | 25.0% |
| ! | TCAAAGAGTTTAATTACTGA+CGG | - | chr6_1:15559597-15559616 | Msa0876940:intron | 25.0% |
| !! | CTTTTGAATATGATCCATAA+TGG | + | chr6_1:15560055-15560074 | None:intergenic | 25.0% |
| ! | GATCATATTCAAAAGAGATA+TGG | - | chr6_1:15560060-15560079 | Msa0876940:intron | 25.0% |
| !! | TCAATTAAAACAAGAGCTTT+TGG | - | chr6_1:15560087-15560106 | Msa0876940:intron | 25.0% |
| ! | AATTCATACAAGACAATTGA+TGG | - | chr6_1:15560112-15560131 | Msa0876940:intron | 25.0% |
| !!! | CTTTTAATCATTTTGGTGAA+GGG | - | chr6_1:15560500-15560519 | Msa0876940:intron | 25.0% |
| !!! | TGCTCAAACTCTTTTAATTT+GGG | + | chr6_1:15560652-15560671 | None:intergenic | 25.0% |
| !! | AGATTTTCTTAGTGCTTATT+TGG | - | chr6_1:15560884-15560903 | Msa0876940:CDS | 25.0% |
| ! | GCTATTATGAGATATTTAGA+AGG | + | chr6_1:15561162-15561181 | None:intergenic | 25.0% |
| ! | TGAGTGTTTGAACAAATAAT+AGG | + | chr6_1:15561365-15561384 | None:intergenic | 25.0% |
| ! | TCATTGATGAAAATTAGAGA+CGG | + | chr6_1:15561889-15561908 | None:intergenic | 25.0% |
| ! | TGTAACAAATTAAAGTGGTT+GGG | + | chr6_1:15562107-15562126 | None:intergenic | 25.0% |
| ! | ATGTAACAAATTAAAGTGGT+TGG | + | chr6_1:15562108-15562127 | None:intergenic | 25.0% |
| ! | TTGCATGTAACAAATTAAAG+TGG | + | chr6_1:15562112-15562131 | None:intergenic | 25.0% |
| GAAGAGGATGAAACAAAATT+TGG | + | chr6_1:15558857-15558876 | None:intergenic | 30.0% | |
| TTGTTGTACAAGATGTACAA+AGG | - | chr6_1:15558894-15558913 | Msa0876940:three_prime_UTR | 30.0% | |
| ! | GTTTAATAGAAGTGCATTGT+CGG | - | chr6_1:15559304-15559323 | Msa0876940:CDS | 30.0% |
| TACTTGTGGTGAATTATCAT+CGG | + | chr6_1:15559354-15559373 | None:intergenic | 30.0% | |
| ! | GTGTAAAATAGTCTTACTTG+TGG | + | chr6_1:15559368-15559387 | None:intergenic | 30.0% |
| ACAATGTGGTGAATTATCAT+CGG | + | chr6_1:15559397-15559416 | None:intergenic | 30.0% | |
| ! | AATGGGTTTATATGACAATG+TGG | + | chr6_1:15559411-15559430 | None:intergenic | 30.0% |
| CAATTCAAGATGAACCATTA+TGG | - | chr6_1:15560038-15560057 | Msa0876940:intron | 30.0% | |
| !! | GGTCTTATTGATGTTATACA+TGG | - | chr6_1:15560367-15560386 | Msa0876940:intron | 30.0% |
| ! | TCATGACAAAGTTATGCTTT+TGG | - | chr6_1:15560429-15560448 | Msa0876940:intron | 30.0% |
| ! | CATGACAAAGTTATGCTTTT+GGG | - | chr6_1:15560430-15560449 | Msa0876940:intron | 30.0% |
| ACATAGTGATTCTTATACAC+CGG | - | chr6_1:15560453-15560472 | Msa0876940:intron | 30.0% | |
| !! | GCTTTTAATCATTTTGGTGA+AGG | - | chr6_1:15560499-15560518 | Msa0876940:intron | 30.0% |
| ATGCCAAGGTATGTATATAT+AGG | - | chr6_1:15560535-15560554 | Msa0876940:CDS | 30.0% | |
| TGACCTATATATACATACCT+TGG | + | chr6_1:15560541-15560560 | None:intergenic | 30.0% | |
| GGTAAAAAAAAAGTCATGGA+TGG | - | chr6_1:15560579-15560598 | Msa0876940:CDS | 30.0% | |
| !! | GTGCTCAAACTCTTTTAATT+TGG | + | chr6_1:15560653-15560672 | None:intergenic | 30.0% |
| !! | CGGGTTCTCTTTTTAAAAAA+AGG | + | chr6_1:15560683-15560702 | None:intergenic | 30.0% |
| GTTGTTCAACATCATTAAAC+GGG | + | chr6_1:15560702-15560721 | None:intergenic | 30.0% | |
| CGTTGTTCAACATCATTAAA+CGG | + | chr6_1:15560703-15560722 | None:intergenic | 30.0% | |
| TATATGTAAGACCAACACTT+TGG | - | chr6_1:15560795-15560814 | Msa0876940:CDS | 30.0% | |
| ATATGTAAGACCAACACTTT+GGG | - | chr6_1:15560796-15560815 | Msa0876940:CDS | 30.0% | |
| AAGAAAATCTCATTGCAGTT+GGG | + | chr6_1:15560874-15560893 | None:intergenic | 30.0% | |
| TAAGAAAATCTCATTGCAGT+TGG | + | chr6_1:15560875-15560894 | None:intergenic | 30.0% | |
| TTTCTTAGTGCTTATTTGGA+TGG | - | chr6_1:15560888-15560907 | Msa0876940:CDS | 30.0% | |
| TTGGAGTTTATGTGTTAAAG+TGG | + | chr6_1:15560955-15560974 | None:intergenic | 30.0% | |
| ! | GCTTTTATGAAGTTGAGAAT+TGG | + | chr6_1:15560974-15560993 | None:intergenic | 30.0% |
| GTCATGATACTACTAAGAAA+GGG | + | chr6_1:15561205-15561224 | None:intergenic | 30.0% | |
| !!! | TTAAGTCTCTACCTTGTTTT+TGG | + | chr6_1:15561239-15561258 | None:intergenic | 30.0% |
| ! | ATTGTTTTCAGATGTAGACA+TGG | - | chr6_1:15561428-15561447 | Msa0876940:intron | 30.0% |
| !! | TAGACATGGTTATTTTCATG+TGG | - | chr6_1:15561442-15561461 | Msa0876940:intron | 30.0% |
| TGAACAATGATTACACACAT+TGG | - | chr6_1:15561465-15561484 | Msa0876940:intron | 30.0% | |
| GAACAATGATTACACACATT+GGG | - | chr6_1:15561466-15561485 | Msa0876940:intron | 30.0% | |
| ACCAGATAATAGATTTAGCA+AGG | - | chr6_1:15561553-15561572 | Msa0876940:intron | 30.0% | |
| TCCTTGCTAAATCTATTATC+TGG | + | chr6_1:15561557-15561576 | None:intergenic | 30.0% | |
| CAGAAAGTGAATATAATAGC+TGG | - | chr6_1:15561600-15561619 | Msa0876940:intron | 30.0% | |
| GTGAATATAATAGCTGGAAT+TGG | - | chr6_1:15561606-15561625 | Msa0876940:intron | 30.0% | |
| ! | TTTTAGTAGCGAATTAGCAA+CGG | + | chr6_1:15561793-15561812 | None:intergenic | 30.0% |
| AGATTACTACTAATAGAGGA+TGG | + | chr6_1:15562083-15562102 | None:intergenic | 30.0% | |
| ! | TATATTTCATCGGTTAACAG+TGG | - | chr6_1:15562132-15562151 | Msa0876940:intron | 30.0% |
| GAGAATTCTATAAGTAGTTG+TGG | + | chr6_1:15562159-15562178 | None:intergenic | 30.0% | |
| TGTTACCTCTATATAGTCAA+TGG | + | chr6_1:15562187-15562206 | None:intergenic | 30.0% | |
| !!! | TTACTTTTTTCCACTAACTG+CGG | + | chr6_1:15562230-15562249 | None:intergenic | 30.0% |
| CATCTTGTACAACAAGTTCA+GGG | + | chr6_1:15558889-15558908 | None:intergenic | 35.0% | |
| ACATCTTGTACAACAAGTTC+AGG | + | chr6_1:15558890-15558909 | None:intergenic | 35.0% | |
| ! | TGTCACTAGATGCATGTTTT+TGG | + | chr6_1:15559052-15559071 | None:intergenic | 35.0% |
| AACTTGGGCTATTTATCATG+TGG | - | chr6_1:15559824-15559843 | Msa0876940:intron | 35.0% | |
| ! | GCAATCCAATTGATGATTGT+TGG | - | chr6_1:15559852-15559871 | Msa0876940:intron | 35.0% |
| CATCTCCAACAATCATCAAT+TGG | + | chr6_1:15559860-15559879 | None:intergenic | 35.0% | |
| GGATTTGGAAAAGATGCAAT+TGG | - | chr6_1:15559929-15559948 | Msa0876940:intron | 35.0% | |
| TTTGGAAAAGATGCAATTGG+TGG | - | chr6_1:15559932-15559951 | Msa0876940:intron | 35.0% | |
| ! | GATGCAATTGGTGGTAAAAA+TGG | - | chr6_1:15559941-15559960 | Msa0876940:intron | 35.0% |
| !! | ATCTACATTGTCACTGATTC+AGG | - | chr6_1:15559968-15559987 | Msa0876940:intron | 35.0% |
| TACAAGACAATTGATGGAAG+AGG | - | chr6_1:15560118-15560137 | Msa0876940:intron | 35.0% | |
| TGTTCATGATTGTGTTCCAA+CGG | - | chr6_1:15560216-15560235 | Msa0876940:intron | 35.0% | |
| AATTCCATCACCATCTGAAA+CGG | + | chr6_1:15560287-15560306 | None:intergenic | 35.0% | |
| TCTTTGTCTAATTGTCGAGA+TGG | - | chr6_1:15560346-15560365 | Msa0876940:intron | 35.0% | |
| ATACATACCTTGGCATTCTT+TGG | + | chr6_1:15560531-15560550 | None:intergenic | 35.0% | |
| GGTTAGCAAAAATGTGTCTT+TGG | - | chr6_1:15560600-15560619 | Msa0876940:CDS | 35.0% | |
| TAGCAAAAATGTGTCTTTGG+AGG | - | chr6_1:15560603-15560622 | Msa0876940:CDS | 35.0% | |
| AATTCTATCTCCCAAAGTGT+TGG | + | chr6_1:15560809-15560828 | None:intergenic | 35.0% | |
| TTAGTGCTTATTTGGATGGA+CGG | - | chr6_1:15560892-15560911 | Msa0876940:CDS | 35.0% | |
| ! | TCACGTTTTGCTTGAAATCA+CGG | - | chr6_1:15560922-15560941 | Msa0876940:CDS | 35.0% |
| TGATACTACTAAGAAAGGGT+TGG | + | chr6_1:15561201-15561220 | None:intergenic | 35.0% | |
| CGTCATGATACTACTAAGAA+AGG | + | chr6_1:15561206-15561225 | None:intergenic | 35.0% | |
| !!! | CTACCTTGTTTTTGGTTCAA+TGG | + | chr6_1:15561231-15561250 | None:intergenic | 35.0% |
| CATTGGGAAATGTATGCAAT+TGG | - | chr6_1:15561482-15561501 | Msa0876940:intron | 35.0% | |
| ! | TCCAACCATTGACTATATAG+AGG | - | chr6_1:15562179-15562198 | Msa0876940:CDS | 35.0% |
| ACCTCTATATAGTCAATGGT+TGG | + | chr6_1:15562183-15562202 | None:intergenic | 35.0% | |
| TAAATGTATTCCGCAGTTAG+TGG | - | chr6_1:15562217-15562236 | Msa0876940:CDS | 35.0% | |
| TCTAGGTCTAGGAGAAACTT+GGG | - | chr6_1:15559809-15559828 | Msa0876940:intron | 40.0% | |
| GGCTATTTATCATGTGGAAC+TGG | - | chr6_1:15559830-15559849 | Msa0876940:intron | 40.0% | |
| TTGGAGATGTGACCCAAATT+GGG | - | chr6_1:15559871-15559890 | Msa0876940:intron | 40.0% | |
| !! | CACAATCAGCTAGTCTTTGT+CGG | + | chr6_1:15559904-15559923 | None:intergenic | 40.0% |
| ! | AGACTAGCTGATTGTGCAAT+TGG | - | chr6_1:15559908-15559927 | Msa0876940:intron | 40.0% |
| GCTGATTGTGCAATTGGATT+TGG | - | chr6_1:15559914-15559933 | Msa0876940:intron | 40.0% | |
| ACCTTAATGTTCCTGGCTTA+GGG | + | chr6_1:15560012-15560031 | None:intergenic | 40.0% | |
| TACCTTAATGTTCCTGGCTT+AGG | + | chr6_1:15560013-15560032 | None:intergenic | 40.0% | |
| AAGCCAGGAACATTAAGGTA+TGG | - | chr6_1:15560013-15560032 | Msa0876940:intron | 40.0% | |
| GCTAGTGTTCACATTGCAAA+TGG | - | chr6_1:15560142-15560161 | Msa0876940:intron | 40.0% | |
| AGTGTTCACATTGCAAATGG+TGG | - | chr6_1:15560145-15560164 | Msa0876940:intron | 40.0% | |
| GTTCATGATTGTGTTCCAAC+GGG | - | chr6_1:15560217-15560236 | Msa0876940:intron | 40.0% | |
| TTCATGATTGTGTTCCAACG+GGG | - | chr6_1:15560218-15560237 | Msa0876940:intron | 40.0% | |
| CTAATATTTGTGTTCCCCGT+TGG | + | chr6_1:15560235-15560254 | None:intergenic | 40.0% | |
| !!! | CACCAGAACATAGTGGATTT+TGG | - | chr6_1:15560260-15560279 | Msa0876940:intron | 40.0% |
| GTCCAAAATCCACTATGTTC+TGG | + | chr6_1:15560265-15560284 | None:intergenic | 40.0% | |
| TGATTCTTATACACCGGACA+AGG | - | chr6_1:15560459-15560478 | Msa0876940:intron | 40.0% | |
| CATTGCAGTTGGGAATAAGT+GGG | + | chr6_1:15560864-15560883 | None:intergenic | 40.0% | |
| TCATTGCAGTTGGGAATAAG+TGG | + | chr6_1:15560865-15560884 | None:intergenic | 40.0% | |
| GCTCCATTGAACCAAAAACA+AGG | - | chr6_1:15561225-15561244 | Msa0876940:CDS | 40.0% | |
| TGGGAAATGTATGCAATTGG+TGG | - | chr6_1:15561485-15561504 | Msa0876940:intron | 40.0% | |
| GGGAAATGTATGCAATTGGT+GGG | - | chr6_1:15561486-15561505 | Msa0876940:intron | 40.0% | |
| !! | GAGGGTGATTTGTTCTTGAA+TGG | - | chr6_1:15561635-15561654 | Msa0876940:intron | 40.0% |
| ! | GGAGCATTCTTTAGACAAAC+TGG | - | chr6_1:15561656-15561675 | Msa0876940:intron | 40.0% |
| GGGCAGATTACTACTAATAG+AGG | + | chr6_1:15562087-15562106 | None:intergenic | 40.0% | |
| TTCAGGGTCTTGAACTGAAG+AGG | + | chr6_1:15558873-15558892 | None:intergenic | 45.0% | |
| !! | GTAGGAGCATCAATGTCTCT+AGG | - | chr6_1:15559792-15559811 | Msa0876940:intron | 45.0% |
| GCATCAATGTCTCTAGGTCT+AGG | - | chr6_1:15559798-15559817 | Msa0876940:intron | 45.0% | |
| CTCTAGGTCTAGGAGAAACT+TGG | - | chr6_1:15559808-15559827 | Msa0876940:intron | 45.0% | |
| GTTGGAGATGTGACCCAAAT+TGG | - | chr6_1:15559870-15559889 | Msa0876940:intron | 45.0% | |
| GTCGGTTGTTCTCCCAATTT+GGG | + | chr6_1:15559886-15559905 | None:intergenic | 45.0% | |
| ! | TGTCGGTTGTTCTCCCAATT+TGG | + | chr6_1:15559887-15559906 | None:intergenic | 45.0% |
| ACCCTAAGCCAGGAACATTA+AGG | - | chr6_1:15560008-15560027 | Msa0876940:intron | 45.0% | |
| GCACCATACCTTAATGTTCC+TGG | + | chr6_1:15560019-15560038 | None:intergenic | 45.0% | |
| AGAGACTCACCAGAACATAG+TGG | - | chr6_1:15560253-15560272 | Msa0876940:intron | 45.0% | |
| ! | GGATTTTGGACCGTTTCAGA+TGG | - | chr6_1:15560274-15560293 | Msa0876940:intron | 45.0% |
| GACATAGTGCGTGTTTGGAA+TGG | + | chr6_1:15561049-15561068 | None:intergenic | 45.0% | |
| CGGGGATATCTACATAGATG+GGG | + | chr6_1:15561071-15561090 | None:intergenic | 45.0% | |
| GCGGGGATATCTACATAGAT+GGG | + | chr6_1:15561072-15561091 | None:intergenic | 45.0% | |
| TGCGGGGATATCTACATAGA+TGG | + | chr6_1:15561073-15561092 | None:intergenic | 45.0% | |
| TATGTAGATATCCCCGCAAG+TGG | - | chr6_1:15561075-15561094 | Msa0876940:CDS | 45.0% | |
| ATGTAGATATCCCCGCAAGT+GGG | - | chr6_1:15561076-15561095 | Msa0876940:CDS | 45.0% | |
| TGTTTATGGGTTCCCACTTG+CGG | + | chr6_1:15561091-15561110 | None:intergenic | 45.0% | |
| AACCCTACAATCAACAGCCA+AGG | - | chr6_1:15561515-15561534 | Msa0876940:intron | 45.0% | |
| ACCCTACAATCAACAGCCAA+GGG | - | chr6_1:15561516-15561535 | Msa0876940:intron | 45.0% | |
| ! | TCCCTTGGCTGTTGATTGTA+GGG | + | chr6_1:15561520-15561539 | None:intergenic | 45.0% |
| ! | TTCCCTTGGCTGTTGATTGT+AGG | + | chr6_1:15561521-15561540 | None:intergenic | 45.0% |
| GTGCAAGAAATCTGTTCCCT+TGG | + | chr6_1:15561535-15561554 | None:intergenic | 45.0% | |
| TAGCTGGAATTGGAGATCAG+AGG | - | chr6_1:15561616-15561635 | Msa0876940:intron | 45.0% | |
| AGCTGGAATTGGAGATCAGA+GGG | - | chr6_1:15561617-15561636 | Msa0876940:intron | 45.0% | |
| ! | AGTGATGGAACCAACAAGAG+AGG | + | chr6_1:15561735-15561754 | None:intergenic | 45.0% |
| GGTTCCATCACTACTACTTC+TGG | - | chr6_1:15561743-15561762 | Msa0876940:intron | 45.0% | |
| CACACCAGAAGTAGTAGTGA+TGG | + | chr6_1:15561750-15561769 | None:intergenic | 45.0% | |
| !!! | ATTTTTTTTTTTATGTTTAT+GGG | + | chr6_1:15561104-15561123 | None:intergenic | 5.0% |
| GATGCAGTAAACCCTAAGCC+AGG | - | chr6_1:15559998-15560017 | Msa0876940:intron | 50.0% | |
| TGGACCGTTTCAGATGGTGA+TGG | - | chr6_1:15560280-15560299 | Msa0876940:intron | 50.0% | |
| GGCTTGTCCAAAGAATGCCA+AGG | - | chr6_1:15560521-15560540 | Msa0876940:CDS | 50.0% | |
| ATGGGGACATAGTGCGTGTT+TGG | + | chr6_1:15561054-15561073 | None:intergenic | 50.0% | |
| TTTATGGGTTCCCACTTGCG+GGG | + | chr6_1:15561089-15561108 | None:intergenic | 50.0% | |
| GTTTATGGGTTCCCACTTGC+GGG | + | chr6_1:15561090-15561109 | None:intergenic | 50.0% | |
| ATGGAACCAACAAGAGAGGC+TGG | + | chr6_1:15561731-15561750 | None:intergenic | 50.0% | |
| TGGTGTGCTCACTTGCAAGA+AGG | - | chr6_1:15561763-15561782 | Msa0876940:intron | 50.0% | |
| GGTGTGCTCACTTGCAAGAA+GGG | - | chr6_1:15561764-15561783 | Msa0876940:intron | 50.0% | |
| TACACCGGACAAGGACATGC+AGG | - | chr6_1:15560468-15560487 | Msa0876940:intron | 55.0% | |
| GTGACCTGCATGTCCTTGTC+CGG | + | chr6_1:15560475-15560494 | None:intergenic | 55.0% | |
| GCAAGACCAGCCTCTCTTGT+TGG | - | chr6_1:15561722-15561741 | Msa0876940:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 15558762 | 15562292 | 15558762 | ID=Msa0876940;Name=Msa0876940 |
| chr6_1 | mRNA | 15558762 | 15562292 | 15558762 | ID=Msa0876940-mRNA-1;Parent=Msa0876940;Name=Msa0876940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=20|1|1|1|1|1|3|493|413 |
| chr6_1 | exon | 15558762 | 15559615 | 15558762 | ID=Msa0876940-mRNA-1:exon:4460;Parent=Msa0876940-mRNA-1 |
| chr6_1 | exon | 15560512 | 15561258 | 15560512 | ID=Msa0876940-mRNA-1:exon:4459;Parent=Msa0876940-mRNA-1 |
| chr6_1 | exon | 15562139 | 15562292 | 15562139 | ID=Msa0876940-mRNA-1:exon:4458;Parent=Msa0876940-mRNA-1 |
| chr6_1 | five_prime_UTR | 15562273 | 15562292 | 15562273 | ID=Msa0876940-mRNA-1:five_prime_utr;Parent=Msa0876940-mRNA-1 |
| chr6_1 | CDS | 15562139 | 15562272 | 15562139 | ID=Msa0876940-mRNA-1:cds;Parent=Msa0876940-mRNA-1 |
| chr6_1 | CDS | 15560512 | 15561258 | 15560512 | ID=Msa0876940-mRNA-1:cds;Parent=Msa0876940-mRNA-1 |
| chr6_1 | CDS | 15559255 | 15559615 | 15559255 | ID=Msa0876940-mRNA-1:cds;Parent=Msa0876940-mRNA-1 |
| chr6_1 | three_prime_UTR | 15558762 | 15559254 | 15558762 | ID=Msa0876940-mRNA-1:three_prime_utr;Parent=Msa0876940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
