Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876930 | XP_003618787.1 | 99.010 | 404 | 4 | 0 | 1 | 404 | 1 | 404 | 0.0 | 832 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876930 | sp|Q93Z25|PLY22_ARATH | 72.772 | 404 | 107 | 2 | 4 | 404 | 29 | 432 | 0.0 | 613 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0876930 | 0.810835 | 9.461374e-51 | -8.615850e-47 |
| Msa0005890 | Msa0876930 | 0.824477 | 7.903458e-54 | -8.615850e-47 |
| Msa0019900 | Msa0876930 | 0.816901 | 4.354647e-52 | -8.615850e-47 |
| Msa0025720 | Msa0876930 | 0.820541 | 6.496687e-53 | -8.615850e-47 |
| Msa0054690 | Msa0876930 | 0.800558 | 1.362086e-48 | -8.615850e-47 |
| Msa0067330 | Msa0876930 | 0.800956 | 1.129793e-48 | -8.615850e-47 |
| Msa0075450 | Msa0876930 | 0.830641 | 2.618881e-55 | -8.615850e-47 |
| Msa0090400 | Msa0876930 | 0.807657 | 4.542379e-50 | -8.615850e-47 |
| Msa0098040 | Msa0876930 | 0.817107 | 3.914601e-52 | -8.615850e-47 |
| Msa0605560 | Msa0876930 | 0.811222 | 7.799241e-51 | -8.615850e-47 |
| Msa0624900 | Msa0876930 | 0.802015 | 6.856594e-49 | -8.615850e-47 |
| Msa0625190 | Msa0876930 | 0.815660 | 8.251938e-52 | -8.615850e-47 |
| Msa0626450 | Msa0876930 | 0.811836 | 5.734900e-51 | -8.615850e-47 |
| Msa0626490 | Msa0876930 | 0.807317 | 5.362291e-50 | -8.615850e-47 |
| Msa0644410 | Msa0876930 | 0.821161 | 4.677254e-53 | -8.615850e-47 |
| Msa0658640 | Msa0876930 | 0.820621 | 6.227909e-53 | -8.615850e-47 |
| Msa0664090 | Msa0876930 | 0.823859 | 1.104077e-53 | -8.615850e-47 |
| Msa0664150 | Msa0876930 | 0.803797 | 2.936654e-49 | -8.615850e-47 |
| Msa0664600 | Msa0876930 | 0.814231 | 1.712031e-51 | -8.615850e-47 |
| Msa0702720 | Msa0876930 | 0.807245 | 5.553430e-50 | -8.615850e-47 |
| Msa0721080 | Msa0876930 | 0.810839 | 9.439975e-51 | -8.615850e-47 |
| Msa0725770 | Msa0876930 | 0.816194 | 6.271536e-52 | -8.615850e-47 |
| Msa0735780 | Msa0876930 | 0.822118 | 2.810182e-53 | -8.615850e-47 |
| Msa0738340 | Msa0876930 | 0.821469 | 3.972213e-53 | -8.615850e-47 |
| Msa0738700 | Msa0876930 | 0.809608 | 1.739323e-50 | -8.615850e-47 |
| Msa0741220 | Msa0876930 | 0.844225 | 8.623610e-59 | -8.615850e-47 |
| Msa0761670 | Msa0876930 | 0.809502 | 1.833079e-50 | -8.615850e-47 |
| Msa0792370 | Msa0876930 | 0.803956 | 2.721675e-49 | -8.615850e-47 |
| Msa0795870 | Msa0876930 | 0.839769 | 1.299547e-57 | -8.615850e-47 |
| Msa0833530 | Msa0876930 | 0.809000 | 2.348905e-50 | -8.615850e-47 |
| Msa0833650 | Msa0876930 | 0.832119 | 1.133893e-55 | -8.615850e-47 |
| Msa0137880 | Msa0876930 | 0.801636 | 8.199476e-49 | -8.615850e-47 |
| Msa0158860 | Msa0876930 | 0.841830 | 3.745864e-58 | -8.615850e-47 |
| Msa0174450 | Msa0876930 | 0.816575 | 5.152839e-52 | -8.615850e-47 |
| Msa0182190 | Msa0876930 | 0.808321 | 3.280875e-50 | -8.615850e-47 |
| Msa0182240 | Msa0876930 | 0.817388 | 3.384655e-52 | -8.615850e-47 |
| Msa0208030 | Msa0876930 | 0.807528 | 4.836756e-50 | -8.615850e-47 |
| Msa0208140 | Msa0876930 | 0.802531 | 5.367122e-49 | -8.615850e-47 |
| Msa0225100 | Msa0876930 | 0.827588 | 1.439851e-54 | -8.615850e-47 |
| Msa0225860 | Msa0876930 | 0.845907 | 3.029638e-59 | -8.615850e-47 |
| Msa0226310 | Msa0876930 | 0.815705 | 8.063129e-52 | -8.615850e-47 |
| Msa0367870 | Msa0876930 | 0.819153 | 1.348436e-52 | -8.615850e-47 |
| Msa0369790 | Msa0876930 | 0.845245 | 4.579399e-59 | -8.615850e-47 |
| Msa0386090 | Msa0876930 | 0.802942 | 4.415536e-49 | -8.615850e-47 |
| Msa0430300 | Msa0876930 | 0.802831 | 4.654330e-49 | -8.615850e-47 |
| Msa0432140 | Msa0876930 | 0.802405 | 5.697494e-49 | -8.615850e-47 |
| Msa0448340 | Msa0876930 | 0.807245 | 5.553783e-50 | -8.615850e-47 |
| Msa0457560 | Msa0876930 | 0.800420 | 1.453515e-48 | -8.615850e-47 |
| Msa0464000 | Msa0876930 | 0.844266 | 8.408950e-59 | -8.615850e-47 |
| Msa0476650 | Msa0876930 | 0.836065 | 1.164122e-56 | -8.615850e-47 |
| Msa0244640 | Msa0876930 | 0.806632 | 7.485851e-50 | -8.615850e-47 |
| Msa0251710 | Msa0876930 | 0.822989 | 1.763356e-53 | -8.615850e-47 |
| Msa0266180 | Msa0876930 | 0.826351 | 2.845992e-54 | -8.615850e-47 |
| Msa0267110 | Msa0876930 | 0.812987 | 3.214249e-51 | -8.615850e-47 |
| Msa0267790 | Msa0876930 | 0.827410 | 1.589139e-54 | -8.615850e-47 |
| Msa0287740 | Msa0876930 | 0.824963 | 6.069109e-54 | -8.615850e-47 |
| Msa0287870 | Msa0876930 | 0.817484 | 3.220264e-52 | -8.615850e-47 |
| Msa0290720 | Msa0876930 | 0.845030 | 5.236907e-59 | -8.615850e-47 |
| Msa0298470 | Msa0876930 | 0.826573 | 2.519117e-54 | -8.615850e-47 |
| Msa0304570 | Msa0876930 | 0.818052 | 2.397462e-52 | -8.615850e-47 |
| Msa0304680 | Msa0876930 | 0.833932 | 4.012984e-56 | -8.615850e-47 |
| Msa0330380 | Msa0876930 | 0.800966 | 1.124619e-48 | -8.615850e-47 |
| Msa0337580 | Msa0876930 | 0.801818 | 7.524434e-49 | -8.615850e-47 |
| Msa0340500 | Msa0876930 | 0.829931 | 3.905893e-55 | -8.615850e-47 |
| Msa0359020 | Msa0876930 | 0.809666 | 1.690776e-50 | -8.615850e-47 |
| Msa0509550 | Msa0876930 | 0.844233 | 8.583692e-59 | -8.615850e-47 |
| Msa0513970 | Msa0876930 | 0.812157 | 4.883182e-51 | -8.615850e-47 |
| Msa0520990 | Msa0876930 | 0.816560 | 5.192705e-52 | -8.615850e-47 |
| Msa0526730 | Msa0876930 | 0.807958 | 3.918694e-50 | -8.615850e-47 |
| Msa0528570 | Msa0876930 | 0.853995 | 1.651879e-61 | -8.615850e-47 |
| Msa0548470 | Msa0876930 | 0.836344 | 9.885718e-57 | -8.615850e-47 |
| Msa0550050 | Msa0876930 | 0.811230 | 7.769741e-51 | -8.615850e-47 |
| Msa0557460 | Msa0876930 | 0.855387 | 6.526348e-62 | -8.615850e-47 |
| Msa0567170 | Msa0876930 | 0.801344 | 9.413454e-49 | -8.615850e-47 |
| Msa0580370 | Msa0876930 | 0.838256 | 3.203330e-57 | -8.615850e-47 |
| Msa0582480 | Msa0876930 | 0.800123 | 1.670466e-48 | -8.615850e-47 |
| Msa0583360 | Msa0876930 | -0.838307 | 3.108402e-57 | -8.615850e-47 |
| Msa0586220 | Msa0876930 | 0.805917 | 1.059159e-49 | -8.615850e-47 |
| Msa0859290 | Msa0876930 | 0.811183 | 7.953616e-51 | -8.615850e-47 |
| Msa0876930 | Msa0876940 | 0.941401 | 4.434729e-101 | -8.615850e-47 |
| Msa0876930 | Msa0899970 | 0.803350 | 3.635049e-49 | -8.615850e-47 |
| Msa0876930 | Msa0910410 | 0.807989 | 3.859478e-50 | -8.615850e-47 |
| Msa0876930 | Msa0927310 | 0.800020 | 1.752973e-48 | -8.615850e-47 |
| Msa0876930 | Msa0935470 | 0.803919 | 2.770525e-49 | -8.615850e-47 |
| Msa0876930 | Msa0937230 | 0.806116 | 9.615904e-50 | -8.615850e-47 |
| Msa0876930 | Msa0942210 | 0.862828 | 3.844513e-64 | -8.615850e-47 |
| Msa0876930 | Msa0942220 | 0.848842 | 4.737206e-60 | -8.615850e-47 |
| Msa0876930 | Msa0965080 | 0.813487 | 2.496517e-51 | -8.615850e-47 |
| Msa0876930 | Msa0965290 | 0.820307 | 7.348655e-53 | -8.615850e-47 |
| Msa0876930 | Msa0967870 | 0.814210 | 1.729915e-51 | -8.615850e-47 |
| Msa0876930 | Msa0979180 | 0.899656 | 1.596743e-77 | -8.615850e-47 |
| Msa0876930 | Msa0999290 | 0.808595 | 2.867258e-50 | -8.615850e-47 |
| Msa0876930 | Msa0999680 | 0.819711 | 1.006175e-52 | -8.615850e-47 |
| Msa0876930 | Msa1026480 | 0.823822 | 1.126178e-53 | -8.615850e-47 |
| Msa0876930 | Msa1030810 | 0.821063 | 4.926626e-53 | -8.615850e-47 |
| Msa0876930 | Msa1037780 | 0.805753 | 1.146428e-49 | -8.615850e-47 |
| Msa0876930 | Msa1042160 | 0.804237 | 2.378486e-49 | -8.615850e-47 |
| Msa0876930 | Msa1042190 | 0.805740 | 1.153633e-49 | -8.615850e-47 |
| Msa0876930 | Msa1066670 | 0.807304 | 5.395939e-50 | -8.615850e-47 |
| Msa0876930 | Msa1105780 | 0.802709 | 4.933838e-49 | -8.615850e-47 |
| Msa0876930 | Msa1131050 | 0.826471 | 2.663615e-54 | -8.615850e-47 |
| Msa0876930 | Msa1132840 | 0.836957 | 6.901462e-57 | -8.615850e-47 |
| Msa0876930 | Msa1147740 | 0.804921 | 1.712330e-49 | -8.615850e-47 |
| Msa0876930 | Msa1155170 | -0.848444 | 6.104808e-60 | -8.615850e-47 |
| Msa0876930 | Msa1175180 | 0.836011 | 1.201125e-56 | -8.615850e-47 |
| Msa0876930 | Msa1186020 | 0.828184 | 1.034928e-54 | -8.615850e-47 |
| Msa0876930 | Msa1206460 | 0.840013 | 1.122744e-57 | -8.615850e-47 |
| Msa0876930 | Msa1208950 | 0.803236 | 3.839019e-49 | -8.615850e-47 |
| Msa0876930 | Msa1211230 | -0.800026 | 1.747723e-48 | -8.615850e-47 |
| Msa0876930 | Msa1214310 | 0.812486 | 4.137857e-51 | -8.615850e-47 |
| Msa0876930 | Msa1224930 | 0.812928 | 3.312145e-51 | -8.615850e-47 |
| Msa0876930 | Msa1225860 | -0.839032 | 2.018838e-57 | -8.615850e-47 |
| Msa0876930 | Msa1226520 | 0.818208 | 2.210251e-52 | -8.615850e-47 |
| Msa0876930 | Msa1236410 | 0.813081 | 3.066501e-51 | -8.615850e-47 |
| Msa0876930 | Msa1277150 | 0.852847 | 3.528445e-61 | -8.615850e-47 |
| Msa0876930 | Msa1298220 | 0.836464 | 9.217282e-57 | -8.615850e-47 |
| Msa0876930 | Msa1316330 | 0.808271 | 3.362254e-50 | -8.615850e-47 |
| Msa0876930 | Msa1341840 | 0.843026 | 1.804158e-58 | -8.615850e-47 |
| Msa0876930 | Msa1359690 | 0.805078 | 1.587729e-49 | -8.615850e-47 |
| Msa0876930 | Msa1390440 | 0.842615 | 2.320970e-58 | -8.615850e-47 |
| Msa0876930 | Msa1392580 | 0.811320 | 7.428119e-51 | -8.615850e-47 |
| Msa0876930 | Msa1397400 | 0.800901 | 1.159663e-48 | -8.615850e-47 |
| Msa0876930 | Msa1415540 | 0.844928 | 5.577113e-59 | -8.615850e-47 |
| Msa0876930 | Msa1417380 | 0.804364 | 2.238540e-49 | -8.615850e-47 |
| Msa0876930 | Msa1425090 | 0.826870 | 2.139653e-54 | -8.615850e-47 |
| Msa0876930 | Msa1440560 | 0.808405 | 3.148343e-50 | -8.615850e-47 |
| Msa0876930 | Msa1440960 | 0.807881 | 4.070175e-50 | -8.615850e-47 |
| Msa0876930 | Msa1442920 | 0.803865 | 2.842338e-49 | -8.615850e-47 |
| Msa0876930 | Msa1458680 | 0.819792 | 9.641369e-53 | -8.615850e-47 |
| Msa0876930 | Msa1459100 | 0.810643 | 1.040861e-50 | -8.615850e-47 |
| Msa0876930 | Msa1461370 | 0.817640 | 2.969252e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876930 | MtrunA17_Chr6g0458201 | 99.010 | 404 | 4 | 0 | 1 | 404 | 1 | 404 | 0.0 | 832 |
| Msa0876930 | MtrunA17_Chr4g0058051 | 80.366 | 382 | 74 | 1 | 24 | 404 | 26 | 407 | 0.0 | 633 |
| Msa0876930 | MtrunA17_Chr3g0116521 | 75.434 | 403 | 99 | 0 | 2 | 404 | 4 | 406 | 0.0 | 615 |
| Msa0876930 | MtrunA17_Chr3g0123321 | 74.936 | 391 | 95 | 2 | 14 | 404 | 16 | 403 | 0.0 | 583 |
| Msa0876930 | MtrunA17_Chr1g0169731 | 67.624 | 383 | 124 | 0 | 22 | 404 | 68 | 450 | 0.0 | 562 |
| Msa0876930 | MtrunA17_Chr7g0237761 | 66.062 | 386 | 131 | 0 | 19 | 404 | 59 | 444 | 0.0 | 550 |
| Msa0876930 | MtrunA17_Chr3g0123331 | 66.093 | 407 | 134 | 4 | 1 | 404 | 1 | 406 | 0.0 | 532 |
| Msa0876930 | MtrunA17_Chr1g0210321 | 64.644 | 379 | 131 | 1 | 27 | 402 | 35 | 413 | 0.0 | 520 |
| Msa0876930 | MtrunA17_Chr1g0180381 | 62.760 | 384 | 136 | 1 | 26 | 402 | 34 | 417 | 0.0 | 519 |
| Msa0876930 | MtrunA17_Chr7g0264891 | 61.042 | 403 | 155 | 2 | 1 | 402 | 11 | 412 | 2.48e-179 | 507 |
| Msa0876930 | MtrunA17_Chr4g0060211 | 57.487 | 374 | 154 | 3 | 34 | 404 | 63 | 434 | 2.95e-160 | 457 |
| Msa0876930 | MtrunA17_Chr5g0416061 | 56.250 | 368 | 160 | 1 | 38 | 404 | 82 | 449 | 1.61e-153 | 441 |
| Msa0876930 | MtrunA17_Chr8g0362561 | 53.367 | 401 | 171 | 4 | 20 | 404 | 55 | 455 | 5.89e-151 | 435 |
| Msa0876930 | MtrunA17_Chr4g0075231 | 60.571 | 350 | 134 | 3 | 56 | 404 | 39 | 385 | 1.14e-150 | 431 |
| Msa0876930 | MtrunA17_Chr5g0416041 | 59.040 | 354 | 144 | 1 | 52 | 404 | 96 | 449 | 8.74e-150 | 432 |
| Msa0876930 | MtrunA17_Chr6g0452861 | 53.299 | 394 | 171 | 3 | 24 | 404 | 60 | 453 | 3.62e-146 | 422 |
| Msa0876930 | MtrunA17_Chr2g0288921 | 58.857 | 350 | 140 | 3 | 56 | 404 | 63 | 409 | 9.15e-146 | 420 |
| Msa0876930 | MtrunA17_Chr7g0216581 | 58.192 | 354 | 147 | 1 | 52 | 404 | 98 | 451 | 5.64e-143 | 414 |
| Msa0876930 | MtrunA17_Chr8g0373761 | 45.480 | 354 | 185 | 6 | 56 | 404 | 42 | 392 | 2.08e-98 | 298 |
| Msa0876930 | MtrunA17_Chr8g0373721 | 43.968 | 373 | 199 | 7 | 37 | 404 | 25 | 392 | 3.11e-97 | 295 |
| Msa0876930 | MtrunA17_Chr3g0089181 | 45.763 | 354 | 184 | 7 | 56 | 404 | 23 | 373 | 4.57e-97 | 294 |
| Msa0876930 | MtrunA17_Chr8g0373731 | 43.968 | 373 | 199 | 7 | 37 | 404 | 25 | 392 | 2.11e-91 | 280 |
| Msa0876930 | MtrunA17_Chr8g0373701 | 44.068 | 354 | 190 | 7 | 56 | 404 | 97 | 447 | 3.84e-89 | 276 |
| Msa0876930 | MtrunA17_Chr5g0403391 | 42.373 | 354 | 196 | 6 | 56 | 404 | 41 | 391 | 5.84e-84 | 261 |
| Msa0876930 | MtrunA17_Chr4g0031851 | 45.955 | 309 | 161 | 5 | 95 | 400 | 28 | 333 | 1.19e-83 | 259 |
| Msa0876930 | MtrunA17_Chr5g0414541 | 42.373 | 354 | 196 | 6 | 56 | 404 | 41 | 391 | 1.64e-83 | 260 |
| Msa0876930 | MtrunA17_Chr5g0403481 | 42.090 | 354 | 197 | 6 | 56 | 404 | 41 | 391 | 3.72e-83 | 259 |
| Msa0876930 | MtrunA17_Chr5g0403461 | 42.090 | 354 | 197 | 6 | 56 | 404 | 41 | 391 | 3.72e-83 | 259 |
| Msa0876930 | MtrunA17_Chr5g0403491 | 42.090 | 354 | 197 | 6 | 56 | 404 | 41 | 391 | 3.72e-83 | 259 |
| Msa0876930 | MtrunA17_Chr5g0403411 | 42.090 | 354 | 197 | 6 | 56 | 404 | 41 | 391 | 1.29e-80 | 253 |
| Msa0876930 | MtrunA17_Chr1g0183941 | 43.657 | 268 | 147 | 3 | 131 | 396 | 1 | 266 | 2.14e-68 | 217 |
| Msa0876930 | MtrunA17_Chr3g0113551 | 76.984 | 126 | 29 | 0 | 201 | 326 | 161 | 286 | 1.39e-67 | 216 |
| Msa0876930 | MtrunA17_Chr6g0481851 | 40.433 | 277 | 109 | 6 | 89 | 364 | 6 | 227 | 3.38e-52 | 175 |
| Msa0876930 | MtrunA17_Chr1g0212931 | 38.356 | 292 | 154 | 7 | 69 | 359 | 9 | 275 | 1.88e-49 | 170 |
| Msa0876930 | MtrunA17_Chr2g0288901 | 50.641 | 156 | 72 | 3 | 250 | 404 | 5 | 156 | 3.22e-48 | 161 |
| Msa0876930 | MtrunA17_Chr2g0288911 | 63.115 | 122 | 44 | 1 | 131 | 251 | 1 | 122 | 2.82e-43 | 147 |
| Msa0876930 | MtrunA17_Chr1g0182021 | 36.140 | 285 | 158 | 4 | 75 | 359 | 64 | 324 | 1.55e-39 | 145 |
| Msa0876930 | MtrunA17_Chr1g0183951 | 38.889 | 90 | 52 | 2 | 29 | 117 | 17 | 104 | 3.97e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876930 | AT5G63180.1 | 72.772 | 404 | 107 | 2 | 4 | 404 | 29 | 432 | 0.0 | 613 |
| Msa0876930 | AT3G27400.2 | 72.457 | 403 | 105 | 2 | 7 | 404 | 15 | 416 | 0.0 | 612 |
| Msa0876930 | AT3G27400.1 | 72.457 | 403 | 105 | 2 | 7 | 404 | 11 | 412 | 0.0 | 612 |
| Msa0876930 | AT1G67750.1 | 73.522 | 389 | 101 | 1 | 16 | 404 | 22 | 408 | 0.0 | 603 |
| Msa0876930 | AT4G24780.2 | 72.864 | 398 | 106 | 2 | 8 | 404 | 12 | 408 | 0.0 | 591 |
| Msa0876930 | AT4G24780.1 | 72.864 | 398 | 106 | 2 | 8 | 404 | 12 | 408 | 0.0 | 591 |
| Msa0876930 | AT4G13710.1 | 66.412 | 393 | 128 | 1 | 16 | 404 | 78 | 470 | 0.0 | 587 |
| Msa0876930 | AT4G13710.2 | 66.412 | 393 | 128 | 1 | 16 | 404 | 59 | 451 | 0.0 | 584 |
| Msa0876930 | AT3G07010.1 | 68.069 | 404 | 122 | 1 | 8 | 404 | 13 | 416 | 0.0 | 570 |
| Msa0876930 | AT3G07010.2 | 70.822 | 377 | 110 | 0 | 28 | 404 | 7 | 383 | 0.0 | 566 |
| Msa0876930 | AT1G04680.1 | 67.358 | 386 | 122 | 1 | 23 | 404 | 44 | 429 | 0.0 | 553 |
| Msa0876930 | AT3G24670.1 | 68.325 | 382 | 121 | 0 | 23 | 404 | 59 | 440 | 0.0 | 548 |
| Msa0876930 | AT3G24230.1 | 65.026 | 386 | 130 | 2 | 23 | 404 | 67 | 451 | 0.0 | 543 |
| Msa0876930 | AT5G48900.1 | 64.423 | 416 | 134 | 2 | 3 | 404 | 2 | 417 | 0.0 | 533 |
| Msa0876930 | AT4G13210.2 | 68.407 | 383 | 120 | 1 | 23 | 404 | 56 | 438 | 0.0 | 525 |
| Msa0876930 | AT4G13210.1 | 68.407 | 383 | 120 | 1 | 23 | 404 | 19 | 401 | 0.0 | 523 |
| Msa0876930 | AT3G53190.1 | 62.469 | 405 | 136 | 3 | 7 | 396 | 11 | 414 | 0.0 | 512 |
| Msa0876930 | AT5G04310.3 | 62.402 | 383 | 131 | 1 | 27 | 396 | 53 | 435 | 3.09e-171 | 487 |
| Msa0876930 | AT5G04310.1 | 62.402 | 383 | 131 | 1 | 27 | 396 | 53 | 435 | 6.97e-170 | 486 |
| Msa0876930 | AT5G04310.2 | 62.402 | 383 | 131 | 1 | 27 | 396 | 53 | 435 | 6.97e-170 | 486 |
| Msa0876930 | AT3G54920.1 | 59.740 | 385 | 131 | 4 | 27 | 396 | 37 | 412 | 2.80e-168 | 481 |
| Msa0876930 | AT5G55720.1 | 56.608 | 401 | 159 | 4 | 5 | 404 | 6 | 392 | 1.95e-167 | 474 |
| Msa0876930 | AT1G14420.1 | 54.211 | 380 | 166 | 2 | 33 | 404 | 80 | 459 | 4.83e-151 | 436 |
| Msa0876930 | AT1G11920.1 | 58.000 | 350 | 144 | 3 | 56 | 404 | 37 | 384 | 3.92e-147 | 423 |
| Msa0876930 | AT5G15110.1 | 55.211 | 355 | 157 | 2 | 52 | 404 | 118 | 472 | 2.67e-145 | 421 |
| Msa0876930 | AT4G22090.1 | 57.429 | 350 | 145 | 3 | 56 | 404 | 47 | 393 | 5.11e-145 | 418 |
| Msa0876930 | AT3G01270.1 | 56.056 | 355 | 154 | 2 | 52 | 404 | 121 | 475 | 5.60e-145 | 421 |
| Msa0876930 | AT4G22080.1 | 56.857 | 350 | 147 | 3 | 56 | 404 | 47 | 393 | 2.98e-142 | 410 |
| Msa0876930 | AT2G02720.1 | 53.521 | 355 | 159 | 1 | 56 | 404 | 101 | 455 | 5.72e-140 | 407 |
| Msa0876930 | AT1G30350.1 | 51.621 | 401 | 161 | 5 | 4 | 404 | 1 | 368 | 1.50e-139 | 403 |
| Msa0876930 | AT5G09280.1 | 47.984 | 248 | 127 | 2 | 89 | 335 | 6 | 252 | 2.59e-77 | 241 |
| Msa0876930 | AT3G55140.1 | 39.510 | 286 | 147 | 7 | 75 | 359 | 16 | 276 | 1.16e-49 | 171 |
| Msa0876930 | AT3G09540.1 | 36.111 | 288 | 158 | 5 | 73 | 359 | 61 | 323 | 4.46e-43 | 155 |
| Msa0876930 | AT3G55140.2 | 39.044 | 251 | 132 | 6 | 110 | 359 | 22 | 252 | 9.33e-42 | 149 |
| Msa0876930 | AT3G09540.3 | 35.764 | 288 | 155 | 6 | 73 | 359 | 61 | 319 | 4.78e-41 | 149 |
| Msa0876930 | AT3G09540.2 | 35.510 | 245 | 134 | 4 | 73 | 317 | 61 | 281 | 1.60e-35 | 132 |
Find 105 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTAATTCACAACATATT+TGG | 0.148343 | 6_1:-15546344 | Msa0876930:CDS |
| CACCAGAACATAGTGGATTT+TGG | 0.165374 | 6_1:-15546395 | Msa0876930:CDS |
| CTTTAAAACCAGCTGTAAAA+TGG | 0.175781 | 6_1:+15544747 | None:intergenic |
| TGTCGGTTGTTCTCCCAATT+TGG | 0.183698 | 6_1:+15546771 | None:intergenic |
| GAAGAGGATGAAACAAAATT+TGG | 0.190078 | 6_1:+15547811 | None:intergenic |
| AATTTATTTCCGATTAAAAT+TGG | 0.210170 | 6_1:-15544945 | Msa0876930:three_prime_UTR |
| ATGCATACCTTGGCATTCTT+TGG | 0.240400 | 6_1:+15546127 | None:intergenic |
| GGTCATTAAATTATTGCATT+TGG | 0.262484 | 6_1:-15544620 | Msa0876930:three_prime_UTR |
| ATCTACATTGTCACTGATTC+AGG | 0.262745 | 6_1:-15546687 | Msa0876930:CDS |
| TCAATTAAAACAAGAGCTTT+TGG | 0.287323 | 6_1:-15546568 | Msa0876930:CDS |
| TTCATATATTGTAATCATAT+TGG | 0.293726 | 6_1:-15544569 | Msa0876930:three_prime_UTR |
| TCATGACAAAGTTATGCTTT+TGG | 0.300199 | 6_1:-15546226 | Msa0876930:CDS |
| GCTGATTGTGCAATTGGATT+TGG | 0.305034 | 6_1:-15546741 | Msa0876930:CDS |
| GTCGGTTGTTCTCCCAATTT+GGG | 0.308400 | 6_1:+15546772 | None:intergenic |
| CAATTCAAGATGAACCATTA+TGG | 0.310393 | 6_1:-15546617 | Msa0876930:CDS |
| TCCTTGCTAAATCTATTATC+TGG | 0.317797 | 6_1:+15545236 | None:intergenic |
| TACCTTAATGTTCCTGGCTT+AGG | 0.318773 | 6_1:+15546645 | None:intergenic |
| GTTGGAGATGTGACCCAAAT+TGG | 0.323275 | 6_1:-15546785 | Msa0876930:CDS |
| TACAATATATGAAAAGAAAA+AGG | 0.323722 | 6_1:+15544579 | None:intergenic |
| GTCATTAAATTATTGCATTT+GGG | 0.330402 | 6_1:-15544619 | Msa0876930:three_prime_UTR |
| CAACAGGGAACACAAATATA+AGG | 0.331390 | 6_1:-15546422 | Msa0876930:CDS |
| GGTTCCATCACTACTACTTC+TGG | 0.332285 | 6_1:-15545047 | Msa0876930:CDS |
| GCACCATACCTTAATGTTCC+TGG | 0.337883 | 6_1:+15546639 | None:intergenic |
| TTCCCTTGGCTGTTGATTGT+AGG | 0.338196 | 6_1:+15545272 | None:intergenic |
| ACCTTAATGTTCCTGGCTTA+GGG | 0.354026 | 6_1:+15546646 | None:intergenic |
| ACATCTTGTACAACAAGTTC+AGG | 0.356255 | 6_1:+15547778 | None:intergenic |
| AGACTAGCTGATTGTGCAAT+TGG | 0.358822 | 6_1:-15546747 | Msa0876930:CDS |
| ACCCTAAGCCAGGAACATTA+AGG | 0.369613 | 6_1:-15546647 | Msa0876930:CDS |
| GGTCTTATTGATGTTATTCA+TGG | 0.370022 | 6_1:-15546288 | Msa0876930:CDS |
| GTGAATATAATAGCTGGAAT+TGG | 0.370547 | 6_1:-15545184 | Msa0876930:CDS |
| CACAATCAGCTAGTCTTTGT+CGG | 0.381751 | 6_1:+15546754 | None:intergenic |
| GCAAGACCAGCCTCTCTTGT+TGG | 0.384223 | 6_1:-15545068 | Msa0876930:CDS |
| GTTCATGATTGTGTTCCAAC+AGG | 0.393072 | 6_1:-15546438 | Msa0876930:CDS |
| GAGGGTGATTTGTTCTTGAA+TGG | 0.394829 | 6_1:-15545155 | Msa0876930:CDS |
| AAGAGGATGAAACAAAATTT+GGG | 0.396495 | 6_1:+15547812 | None:intergenic |
| GGCTATTTATCATGTGGAAC+TGG | 0.405816 | 6_1:-15546825 | Msa0876930:CDS |
| TTTAAAACCAGCTGTAAAAT+GGG | 0.409449 | 6_1:+15544748 | None:intergenic |
| CTTATATTTGTGTTCCCTGT+TGG | 0.418044 | 6_1:+15546423 | None:intergenic |
| CTTGTACAATGGAAAGGAAA+TGG | 0.419031 | 6_1:-15544538 | Msa0876930:three_prime_UTR |
| GGAGCATTCTTTAGACAAAC+TGG | 0.421504 | 6_1:-15545134 | Msa0876930:CDS |
| TCCCTTGGCTGTTGATTGTA+GGG | 0.426471 | 6_1:+15545273 | None:intergenic |
| AATTCATACAAGACAATTGA+TGG | 0.427271 | 6_1:-15546543 | Msa0876930:CDS |
| GATCATATTCAAAAGAGATA+TGG | 0.439191 | 6_1:-15546595 | Msa0876930:CDS |
| GCAATCCAATTGATGATTGT+TGG | 0.439325 | 6_1:-15546803 | Msa0876930:CDS |
| CATCTCCAACAATCATCAAT+TGG | 0.440002 | 6_1:+15546798 | None:intergenic |
| CAGAAAGTGAATATAATAGC+TGG | 0.465031 | 6_1:-15545190 | Msa0876930:CDS |
| GTCCAAAATCCACTATGTTC+TGG | 0.466293 | 6_1:+15546393 | None:intergenic |
| CTCTAGGTCTAGGAGAAGCT+TGG | 0.466344 | 6_1:-15546847 | Msa0876930:CDS |
| AACAGGGAACACAAATATAA+GGG | 0.474310 | 6_1:-15546421 | Msa0876930:CDS |
| GTGCAAGAAATCTGTTCCCT+TGG | 0.476596 | 6_1:+15545258 | None:intergenic |
| GCATCAATGTCTCTAGGTCT+AGG | 0.481359 | 6_1:-15546857 | Msa0876930:CDS |
| GAACAATGATTACACACATT+GGG | 0.488170 | 6_1:-15545324 | Msa0876930:CDS |
| AAGAATGAGAAAGTATGAAA+GGG | 0.490487 | 6_1:+15547849 | None:intergenic |
| TTGGAGATGTGACCCAAATT+GGG | 0.502512 | 6_1:-15546784 | Msa0876930:CDS |
| AAAGAATGAGAAAGTATGAA+AGG | 0.502722 | 6_1:+15547848 | None:intergenic |
| GTTAATAACGTTATAATACA+TGG | 0.514568 | 6_1:-15546468 | Msa0876930:CDS |
| TCTAGGTCTAGGAGAAGCTT+GGG | 0.521729 | 6_1:-15546846 | Msa0876930:CDS |
| TGGTGTGCTTACTTGCAAGA+AGG | 0.524331 | 6_1:-15545027 | Msa0876930:CDS |
| AGCTGGAATTGGAGATCAGA+GGG | 0.527960 | 6_1:-15545173 | Msa0876930:CDS |
| TCTTTGTCTAATTGTCGTGA+TGG | 0.533384 | 6_1:-15546309 | Msa0876930:CDS |
| TTGCAACTACAAGTTGTGTA+TGG | 0.540930 | 6_1:-15544641 | Msa0876930:three_prime_UTR |
| ATGGAACCAACAAGAGAGGC+TGG | 0.542918 | 6_1:+15545062 | None:intergenic |
| AGAAATTTAAATACATCCGA+AGG | 0.544081 | 6_1:-15544839 | Msa0876930:three_prime_UTR |
| AACTTTAACTTTGTTCCTTG+AGG | 0.546545 | 6_1:-15544723 | Msa0876930:three_prime_UTR |
| TGGCCATGTTGCTTGTACAA+TGG | 0.550286 | 6_1:-15544549 | Msa0876930:three_prime_UTR |
| CATTGGGAGATGTATGCAAT+TGG | 0.551298 | 6_1:-15545308 | Msa0876930:CDS |
| GTGACCTGCATGTCCTTGTC+CGG | 0.551806 | 6_1:+15546183 | None:intergenic |
| GTAGAAGCATCAATGTCTCT+AGG | 0.552561 | 6_1:-15546863 | Msa0876930:intron |
| TACACCGGACAAGGACATGC+AGG | 0.561475 | 6_1:-15546187 | Msa0876930:CDS |
| TGGATTTGGAAAAGATGCAA+TGG | 0.564287 | 6_1:-15546727 | Msa0876930:CDS |
| TACAAGACAATTGATGGAAG+AGG | 0.566366 | 6_1:-15546537 | Msa0876930:CDS |
| GGTGTGCTTACTTGCAAGAA+GGG | 0.567542 | 6_1:-15545026 | Msa0876930:CDS |
| ACCAGATAATAGATTTAGCA+AGG | 0.568377 | 6_1:-15545237 | Msa0876930:CDS |
| TGAACAATGATTACACACAT+TGG | 0.569725 | 6_1:-15545325 | Msa0876930:CDS |
| AATTCCATCACCATCAGAAA+CGG | 0.571243 | 6_1:+15546371 | None:intergenic |
| AGCTTGGGCTATTTATCATG+TGG | 0.571490 | 6_1:-15546831 | Msa0876930:CDS |
| AACCCTACAATCAACAGCCA+AGG | 0.572050 | 6_1:-15545275 | Msa0876930:CDS |
| GGATTTGGAAAAGATGCAAT+GGG | 0.573388 | 6_1:-15546726 | Msa0876930:CDS |
| AAGCCAGGAACATTAAGGTA+TGG | 0.578760 | 6_1:-15546642 | Msa0876930:CDS |
| TTCAGGGTCTTGAACTGAAG+AGG | 0.579107 | 6_1:+15547795 | None:intergenic |
| GCTAGTGTTCACATTGCAAA+TGG | 0.586396 | 6_1:-15546513 | Msa0876930:CDS |
| ACATAGTGATTCTTATACAC+CGG | 0.587740 | 6_1:-15546202 | Msa0876930:CDS |
| GAAATGGATGCAGTTAGTGT+TGG | 0.593781 | 6_1:-15544522 | Msa0876930:three_prime_UTR |
| CACACCAGAAGTAGTAGTGA+TGG | 0.594623 | 6_1:+15545043 | None:intergenic |
| AGGGATTCACCAGAACATAG+TGG | 0.595458 | 6_1:-15546402 | Msa0876930:CDS |
| TTTCCATTGTACAAGCAACA+TGG | 0.599206 | 6_1:+15544546 | None:intergenic |
| TGGGAGATGTATGCAATTGG+TGG | 0.599619 | 6_1:-15545305 | Msa0876930:CDS |
| ATGTTGCTTGTACAATGGAA+AGG | 0.599671 | 6_1:-15544544 | Msa0876930:three_prime_UTR |
| CATCTTGTACAACAAGTTCA+GGG | 0.601679 | 6_1:+15547779 | None:intergenic |
| TGGACCGTTTCTGATGGTGA+TGG | 0.601944 | 6_1:-15546375 | Msa0876930:CDS |
| GATGCAGTAAACCCTAAGCC+AGG | 0.603794 | 6_1:-15546657 | Msa0876930:CDS |
| TTCATGATTGTGTTCCAACA+GGG | 0.604224 | 6_1:-15546437 | Msa0876930:CDS |
| GAAATTTAAATACATCCGAA+GGG | 0.625009 | 6_1:-15544838 | Msa0876930:three_prime_UTR |
| AGTTTGACATTATAACCTCA+AGG | 0.630095 | 6_1:+15544708 | None:intergenic |
| TGATTCTTATACACCGGACA+AGG | 0.630256 | 6_1:-15546196 | Msa0876930:CDS |
| ACCCTACAATCAACAGCCAA+GGG | 0.631197 | 6_1:-15545274 | Msa0876930:CDS |
| AGTGTTCACATTGCAAATGG+TGG | 0.646316 | 6_1:-15546510 | Msa0876930:CDS |
| GATACTACGAGGTGTCAACT+CGG | 0.657439 | 6_1:+15544679 | None:intergenic |
| TAGCTGGAATTGGAGATCAG+AGG | 0.658304 | 6_1:-15545174 | Msa0876930:CDS |
| GGGAGATGTATGCAATTGGT+GGG | 0.665370 | 6_1:-15545304 | Msa0876930:CDS |
| AGTGATGGAACCAACAAGAG+AGG | 0.669990 | 6_1:+15545058 | None:intergenic |
| TTGTTGTACAAGATGTACAA+AGG | 0.691137 | 6_1:-15547771 | Msa0876930:intron |
| GGCTTGTCCAAAGAATGCCA+AGG | 0.703891 | 6_1:-15546134 | Msa0876930:intron |
| TTTGGAAAAGATGCAATGGG+TGG | 0.760333 | 6_1:-15546723 | Msa0876930:CDS |
| TATATAAATATGATACTACG+AGG | 0.791793 | 6_1:+15544668 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTTTTTTTATGTTTAT+GGG | + | chr6_1:15546718-15546737 | None:intergenic | 10.0% |
| !!! | ACATTTTTTTTTTATGTTTA+TGG | + | chr6_1:15546719-15546738 | None:intergenic | 10.0% |
| !!! | TAATTTAACTTTTTAAATAG+TGG | - | chr6_1:15547513-15547532 | Msa0876930:intron | 10.0% |
| !!! | AGTTCTTGTTTTTTTTTTAA+AGG | - | chr6_1:15545222-15545241 | Msa0876930:CDS | 15.0% |
| !! | TTCATAATATGTAATTAACT+TGG | + | chr6_1:15545436-15545455 | None:intergenic | 15.0% |
| !! | ACTATGCTAAAAAAAATTAA+AGG | + | chr6_1:15546331-15546350 | None:intergenic | 15.0% |
| !!! | TTTAATTTTTTTTAGCATAG+TGG | - | chr6_1:15546330-15546349 | Msa0876930:CDS | 15.0% |
| !! | TAACCCAAATTAAAAAAATT+GGG | - | chr6_1:15546418-15546437 | Msa0876930:CDS | 15.0% |
| !! | CTGAAAACAATAATTATTTA+TGG | + | chr6_1:15547032-15547051 | None:intergenic | 15.0% |
| !! | AATTTATTTCCGATTAAAAT+TGG | - | chr6_1:15547458-15547477 | Msa0876930:intron | 15.0% |
| !! | TACAATATATGAAAAGAAAA+AGG | + | chr6_1:15547827-15547846 | None:intergenic | 15.0% |
| !! | TTCATATATTGTAATCATAT+TGG | - | chr6_1:15547834-15547853 | Msa0876930:CDS | 15.0% |
| !! | TCATATAAACCTATTTAGAA+AGG | - | chr6_1:15545165-15545184 | Msa0876930:CDS | 20.0% |
| !!! | CTTTTTTTTCCTTTCTAAAT+AGG | + | chr6_1:15545177-15545196 | None:intergenic | 20.0% |
| !! | CTATTTAGAAAGGAAAAAAA+AGG | - | chr6_1:15545175-15545194 | Msa0876930:CDS | 20.0% |
| !! | ATAAATGTTTGAAGAGAAAA+GGG | + | chr6_1:15545292-15545311 | None:intergenic | 20.0% |
| !! | TATAAATGTTTGAAGAGAAA+AGG | + | chr6_1:15545293-15545312 | None:intergenic | 20.0% |
| !! | GTTTAATTACTATACATTGA+CGG | - | chr6_1:15545350-15545369 | Msa0876930:CDS | 20.0% |
| !! | GTTAATAACGTTATAATACA+TGG | - | chr6_1:15545935-15545954 | Msa0876930:intron | 20.0% |
| !! | TGTTTAATTCACAACATATT+TGG | - | chr6_1:15546059-15546078 | Msa0876930:intron | 20.0% |
| !!! | ACTATTGCTTTTAATCATTT+TGG | - | chr6_1:15546241-15546260 | Msa0876930:CDS | 20.0% |
| !! | CTAACCCAAATTAAAAAAAT+TGG | - | chr6_1:15546417-15546436 | Msa0876930:CDS | 20.0% |
| !!! | ATGCCCAATTTTTTTAATTT+GGG | + | chr6_1:15546424-15546443 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTAAAAGAGAAAC+TGG | - | chr6_1:15546458-15546477 | Msa0876930:CDS | 20.0% |
| !! | CAATCACAAATGAAATTATT+TGG | + | chr6_1:15546551-15546570 | None:intergenic | 20.0% |
| !! | ATGATACTACTAAGAAATTA+GGG | + | chr6_1:15546817-15546836 | None:intergenic | 20.0% |
| !!! | TTGAATTTTTTAAGGTAGTT+AGG | + | chr6_1:15546909-15546928 | None:intergenic | 20.0% |
| !!! | CCTACTTTTTGAATTTTTTA+AGG | + | chr6_1:15546917-15546936 | None:intergenic | 20.0% |
| !! | CCTTAAAAAATTCAAAAAGT+AGG | - | chr6_1:15546914-15546933 | Msa0876930:intron | 20.0% |
| !! | AAATTCAAAAAGTAGGATAA+AGG | - | chr6_1:15546921-15546940 | Msa0876930:intron | 20.0% |
| !! | TATATAAATATGATACTACG+AGG | + | chr6_1:15547738-15547757 | None:intergenic | 20.0% |
| !! | GTCATTAAATTATTGCATTT+GGG | - | chr6_1:15547784-15547803 | Msa0876930:CDS | 20.0% |
| !!! | TTTTTTGGAAGAGTAATTGA+AGG | + | chr6_1:15544526-15544545 | None:intergenic | 25.0% |
| !! | AAGAATGAGAAAGTATGAAA+GGG | + | chr6_1:15544557-15544576 | None:intergenic | 25.0% |
| !! | AAAGAATGAGAAAGTATGAA+AGG | + | chr6_1:15544558-15544577 | None:intergenic | 25.0% |
| ! | AAGAGGATGAAACAAAATTT+GGG | + | chr6_1:15544594-15544613 | None:intergenic | 25.0% |
| !! | CACATTAGATACAATGTTTT+TGG | + | chr6_1:15544791-15544810 | None:intergenic | 25.0% |
| ! | AATAGGTTTATATGACAATG+TGG | + | chr6_1:15545160-15545179 | None:intergenic | 25.0% |
| !!! | GTCAAGTTCTTGTTTTTAAT+TGG | - | chr6_1:15545244-15545263 | Msa0876930:CDS | 25.0% |
| !! | CTTTTGAATATGATCCATAA+TGG | + | chr6_1:15545803-15545822 | None:intergenic | 25.0% |
| ! | GATCATATTCAAAAGAGATA+TGG | - | chr6_1:15545808-15545827 | Msa0876930:intron | 25.0% |
| !! | TCAATTAAAACAAGAGCTTT+TGG | - | chr6_1:15545835-15545854 | Msa0876930:intron | 25.0% |
| ! | AATTCATACAAGACAATTGA+TGG | - | chr6_1:15545860-15545879 | Msa0876930:intron | 25.0% |
| !!! | CTTTTAATCATTTTGGTGAA+GGG | - | chr6_1:15546248-15546267 | Msa0876930:CDS | 25.0% |
| !! | TGTTAGCAAAAATGTGTTTT+TGG | - | chr6_1:15546372-15546391 | Msa0876930:CDS | 25.0% |
| !! | GTTAGCAAAAATGTGTTTTT+GGG | - | chr6_1:15546373-15546392 | Msa0876930:CDS | 25.0% |
| !!! | CATGCCCAATTTTTTTAATT+TGG | + | chr6_1:15546425-15546444 | None:intergenic | 25.0% |
| ! | AAGAAAATCTCTCTATAGTT+GGG | + | chr6_1:15546655-15546674 | None:intergenic | 25.0% |
| ! | AAAGAAAATCTCTCTATAGT+TGG | + | chr6_1:15546656-15546675 | None:intergenic | 25.0% |
| ! | CATGATACTACTAAGAAATT+AGG | + | chr6_1:15546818-15546837 | None:intergenic | 25.0% |
| ! | AATTTCTTAGTAGTATCATG+AGG | - | chr6_1:15546818-15546837 | Msa0876930:CDS | 25.0% |
| !!! | TTACTTTGTTTTTGGTTCAA+TGG | + | chr6_1:15546846-15546865 | None:intergenic | 25.0% |
| !!! | TTAGGTCTTTACTTTGTTTT+TGG | + | chr6_1:15546854-15546873 | None:intergenic | 25.0% |
| !! | CACATTTCTTTGAATTTGTT+AGG | + | chr6_1:15546872-15546891 | None:intergenic | 25.0% |
| ! | TAAAAAAAGTTGAAATGACG+AGG | - | chr6_1:15547421-15547440 | Msa0876930:intron | 25.0% |
| ! | AAAAAAAGTTGAAATGACGA+GGG | - | chr6_1:15547422-15547441 | Msa0876930:intron | 25.0% |
| !!! | AACTGATCTCCAATTTTAAT+CGG | + | chr6_1:15547470-15547489 | None:intergenic | 25.0% |
| ! | AGAAATTTAAATACATCCGA+AGG | - | chr6_1:15547564-15547583 | Msa0876930:intron | 25.0% |
| ! | GAAATTTAAATACATCCGAA+GGG | - | chr6_1:15547565-15547584 | Msa0876930:intron | 25.0% |
| !! | TTTAAAACCAGCTGTAAAAT+GGG | + | chr6_1:15547658-15547677 | None:intergenic | 25.0% |
| ! | GGTCATTAAATTATTGCATT+TGG | - | chr6_1:15547783-15547802 | Msa0876930:CDS | 25.0% |
| !! | ATATGAAAAGAAAAAGGCAT+AGG | + | chr6_1:15547821-15547840 | None:intergenic | 25.0% |
| !!! | GAAAGGGAAGTCATTTTTTT+TGG | + | chr6_1:15544541-15544560 | None:intergenic | 30.0% |
| GAAGAGGATGAAACAAAATT+TGG | + | chr6_1:15544595-15544614 | None:intergenic | 30.0% | |
| TTGTTGTACAAGATGTACAA+AGG | - | chr6_1:15544632-15544651 | Msa0876930:three_prime_UTR | 30.0% | |
| ! | GTTTAATAGAAGTGCATTGT+TGG | - | chr6_1:15545096-15545115 | Msa0876930:CDS | 30.0% |
| AGAAAGGAAAAAAAAGGCTT+TGG | - | chr6_1:15545181-15545200 | Msa0876930:CDS | 30.0% | |
| CAATTCAAGATGAACCATTA+TGG | - | chr6_1:15545786-15545805 | Msa0876930:intron | 30.0% | |
| AACAGGGAACACAAATATAA+GGG | - | chr6_1:15545982-15546001 | Msa0876930:intron | 30.0% | |
| !! | GGTCTTATTGATGTTATTCA+TGG | - | chr6_1:15546115-15546134 | Msa0876930:intron | 30.0% |
| ! | TCATGACAAAGTTATGCTTT+TGG | - | chr6_1:15546177-15546196 | Msa0876930:CDS | 30.0% |
| ! | CATGACAAAGTTATGCTTTT+GGG | - | chr6_1:15546178-15546197 | Msa0876930:CDS | 30.0% |
| ACATAGTGATTCTTATACAC+CGG | - | chr6_1:15546201-15546220 | Msa0876930:CDS | 30.0% | |
| !! | GCTTTTAATCATTTTGGTGA+AGG | - | chr6_1:15546247-15546266 | Msa0876930:CDS | 30.0% |
| TGTCATATATATGCATACCT+TGG | + | chr6_1:15546289-15546308 | None:intergenic | 30.0% | |
| TGTGTAAGATCAACTTCTTT+AGG | - | chr6_1:15546575-15546594 | Msa0876930:CDS | 30.0% | |
| ! | GCTATTATGAGAGATTTTGA+AGG | + | chr6_1:15546774-15546793 | None:intergenic | 30.0% |
| ! | ATTGTTTTCAGATGTAGACA+TGG | - | chr6_1:15547041-15547060 | Msa0876930:intron | 30.0% |
| TGAACAATGATTACACACAT+TGG | - | chr6_1:15547078-15547097 | Msa0876930:intron | 30.0% | |
| GAACAATGATTACACACATT+GGG | - | chr6_1:15547079-15547098 | Msa0876930:intron | 30.0% | |
| ACCAGATAATAGATTTAGCA+AGG | - | chr6_1:15547166-15547185 | Msa0876930:intron | 30.0% | |
| TCCTTGCTAAATCTATTATC+TGG | + | chr6_1:15547170-15547189 | None:intergenic | 30.0% | |
| CAGAAAGTGAATATAATAGC+TGG | - | chr6_1:15547213-15547232 | Msa0876930:intron | 30.0% | |
| GTGAATATAATAGCTGGAAT+TGG | - | chr6_1:15547219-15547238 | Msa0876930:intron | 30.0% | |
| ! | TTTTAGTAGCGAATTAGCAA+CGG | + | chr6_1:15547406-15547425 | None:intergenic | 30.0% |
| !! | CATCAATTTTTGTTTCCCTT+CGG | + | chr6_1:15547583-15547602 | None:intergenic | 30.0% |
| !! | CTTTAAAACCAGCTGTAAAA+TGG | + | chr6_1:15547659-15547678 | None:intergenic | 30.0% |
| ! | AACTTTAACTTTGTTCCTTG+AGG | - | chr6_1:15547680-15547699 | Msa0876930:intron | 30.0% |
| AGTTTGACATTATAACCTCA+AGG | + | chr6_1:15547698-15547717 | None:intergenic | 30.0% | |
| CATCTTGTACAACAAGTTCA+GGG | + | chr6_1:15544627-15544646 | None:intergenic | 35.0% | |
| ACATCTTGTACAACAAGTTC+AGG | + | chr6_1:15544628-15544647 | None:intergenic | 35.0% | |
| ACAATGTGGTGAATTATCGT+TGG | + | chr6_1:15545146-15545165 | None:intergenic | 35.0% | |
| ! | GCAATCCAATTGATGATTGT+TGG | - | chr6_1:15545600-15545619 | Msa0876930:intron | 35.0% |
| CATCTCCAACAATCATCAAT+TGG | + | chr6_1:15545608-15545627 | None:intergenic | 35.0% | |
| TGGATTTGGAAAAGATGCAA+TGG | - | chr6_1:15545676-15545695 | Msa0876930:intron | 35.0% | |
| GGATTTGGAAAAGATGCAAT+GGG | - | chr6_1:15545677-15545696 | Msa0876930:intron | 35.0% | |
| !! | ATCTACATTGTCACTGATTC+AGG | - | chr6_1:15545716-15545735 | Msa0876930:intron | 35.0% |
| TACAAGACAATTGATGGAAG+AGG | - | chr6_1:15545866-15545885 | Msa0876930:intron | 35.0% | |
| TTCATGATTGTGTTCCAACA+GGG | - | chr6_1:15545966-15545985 | Msa0876930:intron | 35.0% | |
| CTTATATTTGTGTTCCCTGT+TGG | + | chr6_1:15545983-15546002 | None:intergenic | 35.0% | |
| CAACAGGGAACACAAATATA+AGG | - | chr6_1:15545981-15546000 | Msa0876930:intron | 35.0% | |
| AATTCCATCACCATCAGAAA+CGG | + | chr6_1:15546035-15546054 | None:intergenic | 35.0% | |
| TCTTTGTCTAATTGTCGTGA+TGG | - | chr6_1:15546094-15546113 | Msa0876930:intron | 35.0% | |
| GGGAGTAGAAATATTTGCTT+AGG | - | chr6_1:15546393-15546412 | Msa0876930:CDS | 35.0% | |
| ! | GGAGAGAGAATTTTCTATCA+CGG | - | chr6_1:15546596-15546615 | Msa0876930:CDS | 35.0% |
| !! | TAGACATGGCTATTTTCATG+TGG | - | chr6_1:15547055-15547074 | Msa0876930:intron | 35.0% |
| TTGCAACTACAAGTTGTGTA+TGG | - | chr6_1:15547762-15547781 | Msa0876930:intron | 35.0% | |
| TTTCCATTGTACAAGCAACA+TGG | + | chr6_1:15547860-15547879 | None:intergenic | 35.0% | |
| ! | ATGTTGCTTGTACAATGGAA+AGG | - | chr6_1:15547859-15547878 | Msa0876930:CDS | 35.0% |
| CTTGTACAATGGAAAGGAAA+TGG | - | chr6_1:15547865-15547884 | Msa0876930:exon | 35.0% | |
| GGTGAATTATCGTTGGATGT+TGG | + | chr6_1:15545139-15545158 | None:intergenic | 40.0% | |
| !! | GTAGAAGCATCAATGTCTCT+AGG | - | chr6_1:15545540-15545559 | Msa0876930:intron | 40.0% |
| AGCTTGGGCTATTTATCATG+TGG | - | chr6_1:15545572-15545591 | Msa0876930:intron | 40.0% | |
| GGCTATTTATCATGTGGAAC+TGG | - | chr6_1:15545578-15545597 | Msa0876930:intron | 40.0% | |
| TTGGAGATGTGACCCAAATT+GGG | - | chr6_1:15545619-15545638 | Msa0876930:intron | 40.0% | |
| !! | CACAATCAGCTAGTCTTTGT+CGG | + | chr6_1:15545652-15545671 | None:intergenic | 40.0% |
| ! | AGACTAGCTGATTGTGCAAT+TGG | - | chr6_1:15545656-15545675 | Msa0876930:intron | 40.0% |
| GCTGATTGTGCAATTGGATT+TGG | - | chr6_1:15545662-15545681 | Msa0876930:intron | 40.0% | |
| TTTGGAAAAGATGCAATGGG+TGG | - | chr6_1:15545680-15545699 | Msa0876930:intron | 40.0% | |
| GATGCAATGGGTGGTAAAAA+TGG | - | chr6_1:15545689-15545708 | Msa0876930:intron | 40.0% | |
| ACCTTAATGTTCCTGGCTTA+GGG | + | chr6_1:15545760-15545779 | None:intergenic | 40.0% | |
| TACCTTAATGTTCCTGGCTT+AGG | + | chr6_1:15545761-15545780 | None:intergenic | 40.0% | |
| AAGCCAGGAACATTAAGGTA+TGG | - | chr6_1:15545761-15545780 | Msa0876930:intron | 40.0% | |
| GCTAGTGTTCACATTGCAAA+TGG | - | chr6_1:15545890-15545909 | Msa0876930:intron | 40.0% | |
| AGTGTTCACATTGCAAATGG+TGG | - | chr6_1:15545893-15545912 | Msa0876930:intron | 40.0% | |
| GTTCATGATTGTGTTCCAAC+AGG | - | chr6_1:15545965-15545984 | Msa0876930:intron | 40.0% | |
| !!! | CACCAGAACATAGTGGATTT+TGG | - | chr6_1:15546008-15546027 | Msa0876930:intron | 40.0% |
| GTCCAAAATCCACTATGTTC+TGG | + | chr6_1:15546013-15546032 | None:intergenic | 40.0% | |
| TGATTCTTATACACCGGACA+AGG | - | chr6_1:15546207-15546226 | Msa0876930:CDS | 40.0% | |
| ATGCATACCTTGGCATTCTT+TGG | + | chr6_1:15546279-15546298 | None:intergenic | 40.0% | |
| ! | TCTCTATAGTTGGGAGTATG+GGG | + | chr6_1:15546646-15546665 | None:intergenic | 40.0% |
| ! | CTCTCTATAGTTGGGAGTAT+GGG | + | chr6_1:15546647-15546666 | None:intergenic | 40.0% |
| TCTCTCTATAGTTGGGAGTA+TGG | + | chr6_1:15546648-15546667 | None:intergenic | 40.0% | |
| GGGGTTATCTACATAGAGAT+GGG | + | chr6_1:15546684-15546703 | None:intergenic | 40.0% | |
| TGGGGTTATCTACATAGAGA+TGG | + | chr6_1:15546685-15546704 | None:intergenic | 40.0% | |
| TATGTAGATAACCCCACAAG+TGG | - | chr6_1:15546689-15546708 | Msa0876930:CDS | 40.0% | |
| ATGTAGATAACCCCACAAGT+GGG | - | chr6_1:15546690-15546709 | Msa0876930:CDS | 40.0% | |
| CATTGGGAGATGTATGCAAT+TGG | - | chr6_1:15547095-15547114 | Msa0876930:intron | 40.0% | |
| !! | GAGGGTGATTTGTTCTTGAA+TGG | - | chr6_1:15547248-15547267 | Msa0876930:intron | 40.0% |
| ! | GGAGCATTCTTTAGACAAAC+TGG | - | chr6_1:15547269-15547288 | Msa0876930:intron | 40.0% |
| ! | TCAATAGCCCATTTTACAGC+TGG | - | chr6_1:15547648-15547667 | Msa0876930:intron | 40.0% |
| GAAATGGATGCAGTTAGTGT+TGG | - | chr6_1:15547881-15547900 | Msa0876930:five_prime_UTR | 40.0% | |
| TTCAGGGTCTTGAACTGAAG+AGG | + | chr6_1:15544611-15544630 | None:intergenic | 45.0% | |
| CGTTGGATGTTGGTGTAAGA+TGG | + | chr6_1:15545129-15545148 | None:intergenic | 45.0% | |
| GCATCAATGTCTCTAGGTCT+AGG | - | chr6_1:15545546-15545565 | Msa0876930:intron | 45.0% | |
| TCTAGGTCTAGGAGAAGCTT+GGG | - | chr6_1:15545557-15545576 | Msa0876930:intron | 45.0% | |
| GTTGGAGATGTGACCCAAAT+TGG | - | chr6_1:15545618-15545637 | Msa0876930:intron | 45.0% | |
| GTCGGTTGTTCTCCCAATTT+GGG | + | chr6_1:15545634-15545653 | None:intergenic | 45.0% | |
| ! | TGTCGGTTGTTCTCCCAATT+TGG | + | chr6_1:15545635-15545654 | None:intergenic | 45.0% |
| ACCCTAAGCCAGGAACATTA+AGG | - | chr6_1:15545756-15545775 | Msa0876930:intron | 45.0% | |
| GCACCATACCTTAATGTTCC+TGG | + | chr6_1:15545767-15545786 | None:intergenic | 45.0% | |
| AGGGATTCACCAGAACATAG+TGG | - | chr6_1:15546001-15546020 | Msa0876930:intron | 45.0% | |
| ! | GGATTTTGGACCGTTTCTGA+TGG | - | chr6_1:15546022-15546041 | Msa0876930:intron | 45.0% |
| TATCACGGCGTCTCAAAATG+TGG | - | chr6_1:15546611-15546630 | Msa0876930:CDS | 45.0% | |
| TTTATGGGTTCCCACTTGTG+GGG | + | chr6_1:15546703-15546722 | None:intergenic | 45.0% | |
| GTTTATGGGTTCCCACTTGT+GGG | + | chr6_1:15546704-15546723 | None:intergenic | 45.0% | |
| TGTTTATGGGTTCCCACTTG+TGG | + | chr6_1:15546705-15546724 | None:intergenic | 45.0% | |
| TGGGAGATGTATGCAATTGG+TGG | - | chr6_1:15547098-15547117 | Msa0876930:intron | 45.0% | |
| GGGAGATGTATGCAATTGGT+GGG | - | chr6_1:15547099-15547118 | Msa0876930:intron | 45.0% | |
| AACCCTACAATCAACAGCCA+AGG | - | chr6_1:15547128-15547147 | Msa0876930:intron | 45.0% | |
| ACCCTACAATCAACAGCCAA+GGG | - | chr6_1:15547129-15547148 | Msa0876930:intron | 45.0% | |
| ! | TCCCTTGGCTGTTGATTGTA+GGG | + | chr6_1:15547133-15547152 | None:intergenic | 45.0% |
| ! | TTCCCTTGGCTGTTGATTGT+AGG | + | chr6_1:15547134-15547153 | None:intergenic | 45.0% |
| GTGCAAGAAATCTGTTCCCT+TGG | + | chr6_1:15547148-15547167 | None:intergenic | 45.0% | |
| TAGCTGGAATTGGAGATCAG+AGG | - | chr6_1:15547229-15547248 | Msa0876930:intron | 45.0% | |
| AGCTGGAATTGGAGATCAGA+GGG | - | chr6_1:15547230-15547249 | Msa0876930:intron | 45.0% | |
| ! | AGTGATGGAACCAACAAGAG+AGG | + | chr6_1:15547348-15547367 | None:intergenic | 45.0% |
| GGTTCCATCACTACTACTTC+TGG | - | chr6_1:15547356-15547375 | Msa0876930:intron | 45.0% | |
| CACACCAGAAGTAGTAGTGA+TGG | + | chr6_1:15547363-15547382 | None:intergenic | 45.0% | |
| TGGTGTGCTTACTTGCAAGA+AGG | - | chr6_1:15547376-15547395 | Msa0876930:intron | 45.0% | |
| GGTGTGCTTACTTGCAAGAA+GGG | - | chr6_1:15547377-15547396 | Msa0876930:intron | 45.0% | |
| ! | GATACTACGAGGTGTCAACT+CGG | + | chr6_1:15547727-15547746 | None:intergenic | 45.0% |
| ! | TGGCCATGTTGCTTGTACAA+TGG | - | chr6_1:15547854-15547873 | Msa0876930:CDS | 45.0% |
| CTCTAGGTCTAGGAGAAGCT+TGG | - | chr6_1:15545556-15545575 | Msa0876930:intron | 50.0% | |
| GATGCAGTAAACCCTAAGCC+AGG | - | chr6_1:15545746-15545765 | Msa0876930:intron | 50.0% | |
| ! | TGGACCGTTTCTGATGGTGA+TGG | - | chr6_1:15546028-15546047 | Msa0876930:intron | 50.0% |
| GGCTTGTCCAAAGAATGCCA+AGG | - | chr6_1:15546269-15546288 | Msa0876930:CDS | 50.0% | |
| ATGGAACCAACAAGAGAGGC+TGG | + | chr6_1:15547344-15547363 | None:intergenic | 50.0% | |
| TACACCGGACAAGGACATGC+AGG | - | chr6_1:15546216-15546235 | Msa0876930:CDS | 55.0% | |
| GTGACCTGCATGTCCTTGTC+CGG | + | chr6_1:15546223-15546242 | None:intergenic | 55.0% | |
| GCAAGACCAGCCTCTCTTGT+TGG | - | chr6_1:15547335-15547354 | Msa0876930:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 15544500 | 15547925 | 15544500 | ID=Msa0876930;Name=Msa0876930 |
| chr6_1 | mRNA | 15544500 | 15547925 | 15544500 | ID=Msa0876930-mRNA-1;Parent=Msa0876930;Name=Msa0876930-mRNA-1;_AED=0.00;_eAED=0.00;_QI=47|1|1|1|1|1|3|513|404 |
| chr6_1 | exon | 15544500 | 15545373 | 15544500 | ID=Msa0876930-mRNA-1:exon:4457;Parent=Msa0876930-mRNA-1 |
| chr6_1 | exon | 15546135 | 15546881 | 15546135 | ID=Msa0876930-mRNA-1:exon:4456;Parent=Msa0876930-mRNA-1 |
| chr6_1 | exon | 15547772 | 15547925 | 15547772 | ID=Msa0876930-mRNA-1:exon:4455;Parent=Msa0876930-mRNA-1 |
| chr6_1 | five_prime_UTR | 15547879 | 15547925 | 15547879 | ID=Msa0876930-mRNA-1:five_prime_utr;Parent=Msa0876930-mRNA-1 |
| chr6_1 | CDS | 15547772 | 15547878 | 15547772 | ID=Msa0876930-mRNA-1:cds;Parent=Msa0876930-mRNA-1 |
| chr6_1 | CDS | 15546135 | 15546881 | 15546135 | ID=Msa0876930-mRNA-1:cds;Parent=Msa0876930-mRNA-1 |
| chr6_1 | CDS | 15545013 | 15545373 | 15545013 | ID=Msa0876930-mRNA-1:cds;Parent=Msa0876930-mRNA-1 |
| chr6_1 | three_prime_UTR | 15544500 | 15545012 | 15544500 | ID=Msa0876930-mRNA-1:three_prime_utr;Parent=Msa0876930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
