Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952190 | A0A396JCE0 | 89.375 | 160 | 17 | 0 | 4 | 163 | 18 | 177 | 2.95e-100 | 296 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0102070 | Msa0952190 | 0.863932 | 1.748144e-64 | -8.615850e-47 |
| Msa0743810 | Msa0952190 | 0.822632 | 2.135269e-53 | -8.615850e-47 |
| Msa0783160 | Msa0952190 | 0.813789 | 2.142091e-51 | -8.615850e-47 |
| Msa0825860 | Msa0952190 | 0.804575 | 2.022273e-49 | -8.615850e-47 |
| Msa0227480 | Msa0952190 | 0.814248 | 1.697299e-51 | -8.615850e-47 |
| Msa0414410 | Msa0952190 | 0.804838 | 1.782095e-49 | -8.615850e-47 |
| Msa0414420 | Msa0952190 | 0.822798 | 1.953612e-53 | -8.615850e-47 |
| Msa0450570 | Msa0952190 | 0.818181 | 2.241078e-52 | -8.615850e-47 |
| Msa0452900 | Msa0952190 | 0.819140 | 1.358178e-52 | -8.615850e-47 |
| Msa0267000 | Msa0952190 | 0.801849 | 7.415304e-49 | -8.615850e-47 |
| Msa0267010 | Msa0952190 | 0.804628 | 1.971887e-49 | -8.615850e-47 |
| Msa0342240 | Msa0952190 | 0.800423 | 1.451571e-48 | -8.615850e-47 |
| Msa0360510 | Msa0952190 | 0.804293 | 2.316284e-49 | -8.615850e-47 |
| Msa0846210 | Msa0952190 | 0.807576 | 4.725505e-50 | -8.615850e-47 |
| Msa0952190 | Msa0989060 | 0.805215 | 1.486502e-49 | -8.615850e-47 |
| Msa0952190 | Msa1016280 | 0.800820 | 1.204423e-48 | -8.615850e-47 |
| Msa0952190 | Msa1025360 | 0.810620 | 1.052648e-50 | -8.615850e-47 |
| Msa0952190 | Msa1025370 | 0.805220 | 1.482675e-49 | -8.615850e-47 |
| Msa0952190 | Msa1044830 | 0.802960 | 4.377501e-49 | -8.615850e-47 |
| Msa0952190 | Msa1044840 | 0.813144 | 2.969816e-51 | -8.615850e-47 |
| Msa0952190 | Msa1100980 | 0.839714 | 1.343149e-57 | -8.615850e-47 |
| Msa0952190 | Msa1135740 | 0.818410 | 1.988702e-52 | -8.615850e-47 |
| Msa0952190 | Msa1187950 | 0.804429 | 2.169650e-49 | -8.615850e-47 |
| Msa0952190 | Msa1192640 | 0.842925 | 1.919712e-58 | -8.615850e-47 |
| Msa0952190 | Msa1270240 | 0.811576 | 6.533044e-51 | -8.615850e-47 |
| Msa0952190 | Msa1283330 | 0.812462 | 4.187861e-51 | -8.615850e-47 |
| Msa0952190 | Msa1285930 | 0.833202 | 6.105493e-56 | -8.615850e-47 |
| Msa0952190 | Msa1287800 | 0.814159 | 1.775165e-51 | -8.615850e-47 |
| Msa0952190 | Msa1287810 | 0.828084 | 1.094145e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952190 | MtrunA17_Chr2g0306531 | 89.375 | 160 | 17 | 0 | 4 | 163 | 18 | 177 | 5.68e-104 | 296 |
| Msa0952190 | MtrunA17_Chr7g0226581 | 41.212 | 165 | 85 | 5 | 3 | 160 | 42 | 201 | 9.32e-32 | 115 |
| Msa0952190 | MtrunA17_Chr4g0011741 | 42.353 | 170 | 84 | 4 | 3 | 160 | 738 | 905 | 2.21e-29 | 112 |
| Msa0952190 | MtrunA17_Chr6g0472201 | 38.509 | 161 | 93 | 3 | 3 | 158 | 232 | 391 | 8.42e-26 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATCATCTTCACTTAAATT+TGG | 0.141249 | 6_3:-45613343 | None:intergenic |
| CTAATATATCATACCGTTTC+AGG | 0.206841 | 6_3:-45613439 | None:intergenic |
| CTTGGTAGAGTTCGTTGTTT+TGG | 0.280814 | 6_3:+45613145 | Msa0952190:CDS |
| CTGGAGACTGATTGGAATCT+TGG | 0.297693 | 6_3:-45613087 | None:intergenic |
| TTGGATTGAATCCTGAAGTT+TGG | 0.322903 | 6_3:-45613068 | None:intergenic |
| TTTATGTAAGGCCAAACTTC+AGG | 0.363761 | 6_3:+45613057 | Msa0952190:intron |
| TTCATAGTGTTTCTTAATGT+TGG | 0.379202 | 6_3:-45613212 | None:intergenic |
| TCATTCTTCTTCAACATTGA+CGG | 0.388492 | 6_3:-45613181 | None:intergenic |
| TTCGATAAACATTTCTGCTT+GGG | 0.392860 | 6_3:-45612902 | None:intergenic |
| CAAGTGCTTCAGTCTTTGTT+TGG | 0.396278 | 6_3:+45613112 | Msa0952190:CDS |
| CACTTGGTCTGGAGACTGAT+TGG | 0.400555 | 6_3:-45613095 | None:intergenic |
| AAAGACTGAAGCACTTGGTC+TGG | 0.438649 | 6_3:-45613106 | None:intergenic |
| ATCATACCGTTTCAGGAACA+TGG | 0.446649 | 6_3:-45613432 | None:intergenic |
| AACTGCCTCTGTTTCTTCAT+CGG | 0.460473 | 6_3:-45612950 | None:intergenic |
| AACATGATGGGACATGCTTT+AGG | 0.472552 | 6_3:+45613370 | Msa0952190:CDS |
| TTTCGATAAACATTTCTGCT+TGG | 0.479055 | 6_3:-45612903 | None:intergenic |
| GACTAGCATGAAGGAGAGGA+TGG | 0.511088 | 6_3:+45613243 | Msa0952190:CDS |
| AGCGTGCAAAGAAGGATGAC+GGG | 0.511727 | 6_3:+45612869 | Msa0952190:intron |
| ATCAACCCATGTTCCTGAAA+CGG | 0.522634 | 6_3:+45613426 | Msa0952190:CDS |
| GAAACACGTCAACCTCGAAA+AGG | 0.553170 | 6_3:+45612922 | Msa0952190:CDS |
| AACATTAAGAAACACTATGA+AGG | 0.556057 | 6_3:+45613214 | Msa0952190:CDS |
| ACGAGTCATTGTCAAAGAAG+AGG | 0.586176 | 6_3:+45613272 | Msa0952190:CDS |
| AAAAGCCGATGAAGAAACAG+AGG | 0.594726 | 6_3:+45612945 | Msa0952190:CDS |
| GTCATTGTCAAAGAAGAGGA+TGG | 0.594775 | 6_3:+45613276 | Msa0952190:CDS |
| CAAACAAAGACTGAAGCACT+TGG | 0.598884 | 6_3:-45613111 | None:intergenic |
| AAGCGTGCAAAGAAGGATGA+CGG | 0.601668 | 6_3:+45612868 | Msa0952190:intron |
| AAATTTAAGTGAAGATGATG+TGG | 0.602230 | 6_3:+45613345 | Msa0952190:CDS |
| TTGTTTGGTAAAGAAAAGCT+TGG | 0.606963 | 6_3:+45613127 | Msa0952190:CDS |
| AGATGATGTGGAGAACATGA+TGG | 0.612078 | 6_3:+45613357 | Msa0952190:CDS |
| AGGTGAAATGACTAGCATGA+AGG | 0.622260 | 6_3:+45613234 | Msa0952190:CDS |
| TCATACCGTTTCAGGAACAT+GGG | 0.627839 | 6_3:-45613431 | None:intergenic |
| AAATGACTAGCATGAAGGAG+AGG | 0.644066 | 6_3:+45613239 | Msa0952190:CDS |
| GATGATGTGGAGAACATGAT+GGG | 0.656752 | 6_3:+45613358 | Msa0952190:CDS |
| TGCAAAGAAGGATGACGGGG+AGG | 0.674888 | 6_3:+45612873 | Msa0952190:CDS |
| CATGGGTTGATGTAGACGAA+TGG | 0.697831 | 6_3:-45613414 | None:intergenic |
| GCGTGCAAAGAAGGATGACG+GGG | 0.710711 | 6_3:+45612870 | Msa0952190:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAAAATGAAATACT+TGG | - | chr6_3:45612204-45612223 | None:intergenic | 10.0% |
| !!! | TTTCATTTTAATTTTTATGA+AGG | + | chr6_3:45612208-45612227 | Msa0952190:intron | 10.0% |
| !! | AAAAATTAAAATGAAATACT+TGG | - | chr6_3:45612204-45612223 | None:intergenic | 10.0% |
| !!! | TTTCATTTTAATTTTTATGA+AGG | + | chr6_3:45612208-45612227 | Msa0952190:intron | 10.0% |
| !!! | TATATTATATATAGGCTTTT+TGG | + | chr6_3:45612363-45612382 | Msa0952190:intron | 15.0% |
| !!! | GTTTTTTTGTTATTTATGTA+AGG | + | chr6_3:45613045-45613064 | Msa0952190:intron | 15.0% |
| !!! | TATATTATATATAGGCTTTT+TGG | + | chr6_3:45612363-45612382 | Msa0952190:intron | 15.0% |
| !!! | GTTTTTTTGTTATTTATGTA+AGG | + | chr6_3:45613045-45613064 | Msa0952190:intron | 15.0% |
| ! | TAGAAACCAACATATGTATA+AGG | + | chr6_3:45612308-45612327 | Msa0952190:intron | 25.0% |
| !!! | TTATTTGGTGTAGTTTGTAT+AGG | + | chr6_3:45612601-45612620 | Msa0952190:intron | 25.0% |
| ! | TGTTATGATTCGACAAAAAT+TGG | + | chr6_3:45612748-45612767 | Msa0952190:intron | 25.0% |
| ! | TTCATAGTGTTTCTTAATGT+TGG | - | chr6_3:45613215-45613234 | None:intergenic | 25.0% |
| ! | AACATTAAGAAACACTATGA+AGG | + | chr6_3:45613214-45613233 | Msa0952190:CDS | 25.0% |
| ! | ACATCATCTTCACTTAAATT+TGG | - | chr6_3:45613346-45613365 | None:intergenic | 25.0% |
| ! | AAATTTAAGTGAAGATGATG+TGG | + | chr6_3:45613345-45613364 | Msa0952190:CDS | 25.0% |
| ! | TAGAAACCAACATATGTATA+AGG | + | chr6_3:45612308-45612327 | Msa0952190:intron | 25.0% |
| !!! | TTATTTGGTGTAGTTTGTAT+AGG | + | chr6_3:45612601-45612620 | Msa0952190:intron | 25.0% |
| ! | TGTTATGATTCGACAAAAAT+TGG | + | chr6_3:45612748-45612767 | Msa0952190:intron | 25.0% |
| ! | TTCATAGTGTTTCTTAATGT+TGG | - | chr6_3:45613215-45613234 | None:intergenic | 25.0% |
| ! | AACATTAAGAAACACTATGA+AGG | + | chr6_3:45613214-45613233 | Msa0952190:CDS | 25.0% |
| ! | ACATCATCTTCACTTAAATT+TGG | - | chr6_3:45613346-45613365 | None:intergenic | 25.0% |
| ! | AAATTTAAGTGAAGATGATG+TGG | + | chr6_3:45613345-45613364 | Msa0952190:CDS | 25.0% |
| ! | GGTTTCTAAAAAAATCACGT+TGG | - | chr6_3:45612296-45612315 | None:intergenic | 30.0% |
| AATGTGCCTTATACATATGT+TGG | - | chr6_3:45612317-45612336 | None:intergenic | 30.0% | |
| ATATGTATAAGGCACATTGT+GGG | + | chr6_3:45612319-45612338 | Msa0952190:intron | 30.0% | |
| GAATACACTACAACAAATCA+TGG | - | chr6_3:45612510-45612529 | None:intergenic | 30.0% | |
| GTTTGAAAGTTATATGTGCT+AGG | + | chr6_3:45612571-45612590 | Msa0952190:intron | 30.0% | |
| CGAATCATAACAAAGAAAGT+GGG | - | chr6_3:45612740-45612759 | None:intergenic | 30.0% | |
| TCGAATCATAACAAAGAAAG+TGG | - | chr6_3:45612741-45612760 | None:intergenic | 30.0% | |
| TTCGATAAACATTTCTGCTT+GGG | - | chr6_3:45612905-45612924 | None:intergenic | 30.0% | |
| TTTCGATAAACATTTCTGCT+TGG | - | chr6_3:45612906-45612925 | None:intergenic | 30.0% | |
| TTGTTTGGTAAAGAAAAGCT+TGG | + | chr6_3:45613127-45613146 | Msa0952190:CDS | 30.0% | |
| TCATTCTTCTTCAACATTGA+CGG | - | chr6_3:45613184-45613203 | None:intergenic | 30.0% | |
| ! | GGTTTCTAAAAAAATCACGT+TGG | - | chr6_3:45612296-45612315 | None:intergenic | 30.0% |
| AATGTGCCTTATACATATGT+TGG | - | chr6_3:45612317-45612336 | None:intergenic | 30.0% | |
| ATATGTATAAGGCACATTGT+GGG | + | chr6_3:45612319-45612338 | Msa0952190:intron | 30.0% | |
| GAATACACTACAACAAATCA+TGG | - | chr6_3:45612510-45612529 | None:intergenic | 30.0% | |
| GTTTGAAAGTTATATGTGCT+AGG | + | chr6_3:45612571-45612590 | Msa0952190:intron | 30.0% | |
| CGAATCATAACAAAGAAAGT+GGG | - | chr6_3:45612740-45612759 | None:intergenic | 30.0% | |
| TCGAATCATAACAAAGAAAG+TGG | - | chr6_3:45612741-45612760 | None:intergenic | 30.0% | |
| TTCGATAAACATTTCTGCTT+GGG | - | chr6_3:45612905-45612924 | None:intergenic | 30.0% | |
| TTTCGATAAACATTTCTGCT+TGG | - | chr6_3:45612906-45612925 | None:intergenic | 30.0% | |
| TTGTTTGGTAAAGAAAAGCT+TGG | + | chr6_3:45613127-45613146 | Msa0952190:CDS | 30.0% | |
| TCATTCTTCTTCAACATTGA+CGG | - | chr6_3:45613184-45613203 | None:intergenic | 30.0% | |
| CATATGTATAAGGCACATTG+TGG | + | chr6_3:45612318-45612337 | Msa0952190:intron | 35.0% | |
| ACACATCATAGCAACAACTT+AGG | + | chr6_3:45612417-45612436 | Msa0952190:intron | 35.0% | |
| CACATCATAGCAACAACTTA+GGG | + | chr6_3:45612418-45612437 | Msa0952190:intron | 35.0% | |
| ACATCATAGCAACAACTTAG+GGG | + | chr6_3:45612419-45612438 | Msa0952190:intron | 35.0% | |
| TGGTATCTAAGAGATAGTTG+AGG | - | chr6_3:45612490-45612509 | None:intergenic | 35.0% | |
| GTCATTAACATGTTGAGACT+AGG | - | chr6_3:45612541-45612560 | None:intergenic | 35.0% | |
| TTTATGTAAGGCCAAACTTC+AGG | + | chr6_3:45613057-45613076 | Msa0952190:intron | 35.0% | |
| TTGGATTGAATCCTGAAGTT+TGG | - | chr6_3:45613071-45613090 | None:intergenic | 35.0% | |
| CATATGTATAAGGCACATTG+TGG | + | chr6_3:45612318-45612337 | Msa0952190:intron | 35.0% | |
| ACACATCATAGCAACAACTT+AGG | + | chr6_3:45612417-45612436 | Msa0952190:intron | 35.0% | |
| CACATCATAGCAACAACTTA+GGG | + | chr6_3:45612418-45612437 | Msa0952190:intron | 35.0% | |
| ACATCATAGCAACAACTTAG+GGG | + | chr6_3:45612419-45612438 | Msa0952190:intron | 35.0% | |
| TGGTATCTAAGAGATAGTTG+AGG | - | chr6_3:45612490-45612509 | None:intergenic | 35.0% | |
| GTCATTAACATGTTGAGACT+AGG | - | chr6_3:45612541-45612560 | None:intergenic | 35.0% | |
| TTTATGTAAGGCCAAACTTC+AGG | + | chr6_3:45613057-45613076 | Msa0952190:intron | 35.0% | |
| TTGGATTGAATCCTGAAGTT+TGG | - | chr6_3:45613071-45613090 | None:intergenic | 35.0% | |
| CATCATAGCAACAACTTAGG+GGG | + | chr6_3:45612420-45612439 | Msa0952190:intron | 40.0% | |
| GTGCTAGGTGTTCGTTTATT+TGG | + | chr6_3:45612586-45612605 | Msa0952190:intron | 40.0% | |
| TATAGGTGTGCTGCAGTTTA+TGG | + | chr6_3:45612618-45612637 | Msa0952190:intron | 40.0% | |
| ! | CATGTTGTTGCTGTGTTGTT+AGG | + | chr6_3:45612641-45612660 | Msa0952190:intron | 40.0% |
| ! | TGTTGCTGTGTTGTTAGGTT+AGG | + | chr6_3:45612646-45612665 | Msa0952190:intron | 40.0% |
| !! | TTAGGTTGGCAGGTTATTTC+TGG | + | chr6_3:45612664-45612683 | Msa0952190:intron | 40.0% |
| ACTCACATAGCAGATACACA+GGG | - | chr6_3:45612713-45612732 | None:intergenic | 40.0% | |
| TACTCACATAGCAGATACAC+AGG | - | chr6_3:45612714-45612733 | None:intergenic | 40.0% | |
| ! | ACCTAAAAAGCGTGCAAAGA+AGG | + | chr6_3:45612861-45612880 | Msa0952190:intron | 40.0% |
| !! | TCCTTCTTTGCACGCTTTTT+AGG | - | chr6_3:45612865-45612884 | None:intergenic | 40.0% |
| AAAAGCCGATGAAGAAACAG+AGG | + | chr6_3:45612945-45612964 | Msa0952190:CDS | 40.0% | |
| ! | AACTGCCTCTGTTTCTTCAT+CGG | - | chr6_3:45612953-45612972 | None:intergenic | 40.0% |
| ! | CAAACAAAGACTGAAGCACT+TGG | - | chr6_3:45613114-45613133 | None:intergenic | 40.0% |
| CAAGTGCTTCAGTCTTTGTT+TGG | + | chr6_3:45613112-45613131 | Msa0952190:CDS | 40.0% | |
| ! | CTTGGTAGAGTTCGTTGTTT+TGG | + | chr6_3:45613145-45613164 | Msa0952190:CDS | 40.0% |
| AGGTGAAATGACTAGCATGA+AGG | + | chr6_3:45613234-45613253 | Msa0952190:CDS | 40.0% | |
| AAATGACTAGCATGAAGGAG+AGG | + | chr6_3:45613239-45613258 | Msa0952190:CDS | 40.0% | |
| ACGAGTCATTGTCAAAGAAG+AGG | + | chr6_3:45613272-45613291 | Msa0952190:CDS | 40.0% | |
| GTCATTGTCAAAGAAGAGGA+TGG | + | chr6_3:45613276-45613295 | Msa0952190:CDS | 40.0% | |
| AGATGATGTGGAGAACATGA+TGG | + | chr6_3:45613357-45613376 | Msa0952190:CDS | 40.0% | |
| GATGATGTGGAGAACATGAT+GGG | + | chr6_3:45613358-45613377 | Msa0952190:CDS | 40.0% | |
| ! | AACATGATGGGACATGCTTT+AGG | + | chr6_3:45613370-45613389 | Msa0952190:CDS | 40.0% |
| ATCAACCCATGTTCCTGAAA+CGG | + | chr6_3:45613426-45613445 | Msa0952190:CDS | 40.0% | |
| TCATACCGTTTCAGGAACAT+GGG | - | chr6_3:45613434-45613453 | None:intergenic | 40.0% | |
| CATCATAGCAACAACTTAGG+GGG | + | chr6_3:45612420-45612439 | Msa0952190:intron | 40.0% | |
| GTGCTAGGTGTTCGTTTATT+TGG | + | chr6_3:45612586-45612605 | Msa0952190:intron | 40.0% | |
| TATAGGTGTGCTGCAGTTTA+TGG | + | chr6_3:45612618-45612637 | Msa0952190:intron | 40.0% | |
| ! | CATGTTGTTGCTGTGTTGTT+AGG | + | chr6_3:45612641-45612660 | Msa0952190:intron | 40.0% |
| ! | TGTTGCTGTGTTGTTAGGTT+AGG | + | chr6_3:45612646-45612665 | Msa0952190:intron | 40.0% |
| !! | TTAGGTTGGCAGGTTATTTC+TGG | + | chr6_3:45612664-45612683 | Msa0952190:intron | 40.0% |
| ACTCACATAGCAGATACACA+GGG | - | chr6_3:45612713-45612732 | None:intergenic | 40.0% | |
| TACTCACATAGCAGATACAC+AGG | - | chr6_3:45612714-45612733 | None:intergenic | 40.0% | |
| ! | ACCTAAAAAGCGTGCAAAGA+AGG | + | chr6_3:45612861-45612880 | Msa0952190:intron | 40.0% |
| !! | TCCTTCTTTGCACGCTTTTT+AGG | - | chr6_3:45612865-45612884 | None:intergenic | 40.0% |
| AAAAGCCGATGAAGAAACAG+AGG | + | chr6_3:45612945-45612964 | Msa0952190:CDS | 40.0% | |
| ! | AACTGCCTCTGTTTCTTCAT+CGG | - | chr6_3:45612953-45612972 | None:intergenic | 40.0% |
| ! | CAAACAAAGACTGAAGCACT+TGG | - | chr6_3:45613114-45613133 | None:intergenic | 40.0% |
| CAAGTGCTTCAGTCTTTGTT+TGG | + | chr6_3:45613112-45613131 | Msa0952190:CDS | 40.0% | |
| ! | CTTGGTAGAGTTCGTTGTTT+TGG | + | chr6_3:45613145-45613164 | Msa0952190:CDS | 40.0% |
| AGGTGAAATGACTAGCATGA+AGG | + | chr6_3:45613234-45613253 | Msa0952190:CDS | 40.0% | |
| AAATGACTAGCATGAAGGAG+AGG | + | chr6_3:45613239-45613258 | Msa0952190:CDS | 40.0% | |
| ACGAGTCATTGTCAAAGAAG+AGG | + | chr6_3:45613272-45613291 | Msa0952190:CDS | 40.0% | |
| GTCATTGTCAAAGAAGAGGA+TGG | + | chr6_3:45613276-45613295 | Msa0952190:CDS | 40.0% | |
| AGATGATGTGGAGAACATGA+TGG | + | chr6_3:45613357-45613376 | Msa0952190:CDS | 40.0% | |
| GATGATGTGGAGAACATGAT+GGG | + | chr6_3:45613358-45613377 | Msa0952190:CDS | 40.0% | |
| ! | AACATGATGGGACATGCTTT+AGG | + | chr6_3:45613370-45613389 | Msa0952190:CDS | 40.0% |
| ATCAACCCATGTTCCTGAAA+CGG | + | chr6_3:45613426-45613445 | Msa0952190:CDS | 40.0% | |
| TCATACCGTTTCAGGAACAT+GGG | - | chr6_3:45613434-45613453 | None:intergenic | 40.0% | |
| ! | GCTGTGTTGTTAGGTTAGGT+TGG | + | chr6_3:45612650-45612669 | Msa0952190:intron | 45.0% |
| !! | TGTTGTTAGGTTAGGTTGGC+AGG | + | chr6_3:45612654-45612673 | Msa0952190:intron | 45.0% |
| !! | GTTGGCAGGTTATTTCTGGT+GGG | + | chr6_3:45612668-45612687 | Msa0952190:intron | 45.0% |
| !! | CAGGTTATTTCTGGTGGGTT+GGG | + | chr6_3:45612673-45612692 | Msa0952190:intron | 45.0% |
| !! | AGGTTATTTCTGGTGGGTTG+GGG | + | chr6_3:45612674-45612693 | Msa0952190:intron | 45.0% |
| AAGCGTGCAAAGAAGGATGA+CGG | + | chr6_3:45612868-45612887 | Msa0952190:intron | 45.0% | |
| GAAACACGTCAACCTCGAAA+AGG | + | chr6_3:45612922-45612941 | Msa0952190:CDS | 45.0% | |
| !!! | TCATCGGCTTTTCCTTTTCG+AGG | - | chr6_3:45612937-45612956 | None:intergenic | 45.0% |
| CTGGAGACTGATTGGAATCT+TGG | - | chr6_3:45613090-45613109 | None:intergenic | 45.0% | |
| ! | AAAGACTGAAGCACTTGGTC+TGG | - | chr6_3:45613109-45613128 | None:intergenic | 45.0% |
| !! | CATGGGTTGATGTAGACGAA+TGG | - | chr6_3:45613417-45613436 | None:intergenic | 45.0% |
| ! | GCTGTGTTGTTAGGTTAGGT+TGG | + | chr6_3:45612650-45612669 | Msa0952190:intron | 45.0% |
| !! | TGTTGTTAGGTTAGGTTGGC+AGG | + | chr6_3:45612654-45612673 | Msa0952190:intron | 45.0% |
| !! | GTTGGCAGGTTATTTCTGGT+GGG | + | chr6_3:45612668-45612687 | Msa0952190:intron | 45.0% |
| !! | CAGGTTATTTCTGGTGGGTT+GGG | + | chr6_3:45612673-45612692 | Msa0952190:intron | 45.0% |
| !! | AGGTTATTTCTGGTGGGTTG+GGG | + | chr6_3:45612674-45612693 | Msa0952190:intron | 45.0% |
| AAGCGTGCAAAGAAGGATGA+CGG | + | chr6_3:45612868-45612887 | Msa0952190:intron | 45.0% | |
| GAAACACGTCAACCTCGAAA+AGG | + | chr6_3:45612922-45612941 | Msa0952190:CDS | 45.0% | |
| !!! | TCATCGGCTTTTCCTTTTCG+AGG | - | chr6_3:45612937-45612956 | None:intergenic | 45.0% |
| CTGGAGACTGATTGGAATCT+TGG | - | chr6_3:45613090-45613109 | None:intergenic | 45.0% | |
| ! | AAAGACTGAAGCACTTGGTC+TGG | - | chr6_3:45613109-45613128 | None:intergenic | 45.0% |
| !! | CATGGGTTGATGTAGACGAA+TGG | - | chr6_3:45613417-45613436 | None:intergenic | 45.0% |
| !! | ACATTTATTATATTATATAT+AGG | + | chr6_3:45612355-45612374 | Msa0952190:intron | 5.0% |
| !! | ACATTTATTATATTATATAT+AGG | + | chr6_3:45612355-45612374 | Msa0952190:intron | 5.0% |
| !! | GGTTGGCAGGTTATTTCTGG+TGG | + | chr6_3:45612667-45612686 | Msa0952190:intron | 50.0% |
| !! | GCAGGTTATTTCTGGTGGGT+TGG | + | chr6_3:45612672-45612691 | Msa0952190:intron | 50.0% |
| AGCGTGCAAAGAAGGATGAC+GGG | + | chr6_3:45612869-45612888 | Msa0952190:intron | 50.0% | |
| CACTTGGTCTGGAGACTGAT+TGG | - | chr6_3:45613098-45613117 | None:intergenic | 50.0% | |
| GACTAGCATGAAGGAGAGGA+TGG | + | chr6_3:45613243-45613262 | Msa0952190:CDS | 50.0% | |
| !! | GGTTGGCAGGTTATTTCTGG+TGG | + | chr6_3:45612667-45612686 | Msa0952190:intron | 50.0% |
| !! | GCAGGTTATTTCTGGTGGGT+TGG | + | chr6_3:45612672-45612691 | Msa0952190:intron | 50.0% |
| AGCGTGCAAAGAAGGATGAC+GGG | + | chr6_3:45612869-45612888 | Msa0952190:intron | 50.0% | |
| CACTTGGTCTGGAGACTGAT+TGG | - | chr6_3:45613098-45613117 | None:intergenic | 50.0% | |
| GACTAGCATGAAGGAGAGGA+TGG | + | chr6_3:45613243-45613262 | Msa0952190:CDS | 50.0% | |
| GCGTGCAAAGAAGGATGACG+GGG | + | chr6_3:45612870-45612889 | Msa0952190:intron | 55.0% | |
| !! | TGCAAAGAAGGATGACGGGG+AGG | + | chr6_3:45612873-45612892 | Msa0952190:CDS | 55.0% |
| GCGTGCAAAGAAGGATGACG+GGG | + | chr6_3:45612870-45612889 | Msa0952190:intron | 55.0% | |
| !! | TGCAAAGAAGGATGACGGGG+AGG | + | chr6_3:45612873-45612892 | Msa0952190:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 45612189 | 45613453 | 45612189 | ID=Msa0952190;Name=Msa0952190 |
| chr6_3 | mRNA | 45612189 | 45613453 | 45612189 | ID=Msa0952190-mRNA-1;Parent=Msa0952190;Name=Msa0952190-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|0.66|1|1|3|0|165 |
| chr6_3 | exon | 45612189 | 45612194 | 45612189 | ID=Msa0952190-mRNA-1:exon:10208;Parent=Msa0952190-mRNA-1 |
| chr6_3 | exon | 45612871 | 45612975 | 45612871 | ID=Msa0952190-mRNA-1:exon:10209;Parent=Msa0952190-mRNA-1 |
| chr6_3 | exon | 45613067 | 45613453 | 45613067 | ID=Msa0952190-mRNA-1:exon:10210;Parent=Msa0952190-mRNA-1 |
| chr6_3 | CDS | 45612189 | 45612194 | 45612189 | ID=Msa0952190-mRNA-1:cds;Parent=Msa0952190-mRNA-1 |
| chr6_3 | CDS | 45612871 | 45612975 | 45612871 | ID=Msa0952190-mRNA-1:cds;Parent=Msa0952190-mRNA-1 |
| chr6_3 | CDS | 45613067 | 45613453 | 45613067 | ID=Msa0952190-mRNA-1:cds;Parent=Msa0952190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
