Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953340 | sp|Q8W593|LGUC_ARATH | 67.568 | 74 | 24 | 0 | 71 | 144 | 166 | 239 | 4.54e-26 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953340 | A0A072TQV8 | 83.099 | 71 | 12 | 0 | 73 | 143 | 1 | 71 | 2.50e-32 | 119 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0953340 | 0.807084 | 6.008838e-50 | -8.615850e-47 |
| Msa0626990 | Msa0953340 | 0.838010 | 3.706617e-57 | -8.615850e-47 |
| Msa0627350 | Msa0953340 | 0.839511 | 1.517053e-57 | -8.615850e-47 |
| Msa0651270 | Msa0953340 | 0.813038 | 3.133237e-51 | -8.615850e-47 |
| Msa0679550 | Msa0953340 | 0.824658 | 7.165305e-54 | -8.615850e-47 |
| Msa0693380 | Msa0953340 | 0.805227 | 1.478023e-49 | -8.615850e-47 |
| Msa0717010 | Msa0953340 | 0.801465 | 8.888605e-49 | -8.615850e-47 |
| Msa0731180 | Msa0953340 | 0.814857 | 1.244048e-51 | -8.615850e-47 |
| Msa0178510 | Msa0953340 | 0.816556 | 5.204605e-52 | -8.615850e-47 |
| Msa0190530 | Msa0953340 | 0.804138 | 2.494282e-49 | -8.615850e-47 |
| Msa0199800 | Msa0953340 | -0.816875 | 4.414523e-52 | -8.615850e-47 |
| Msa0206010 | Msa0953340 | 0.821119 | 4.783567e-53 | -8.615850e-47 |
| Msa0218370 | Msa0953340 | 0.801892 | 7.264685e-49 | -8.615850e-47 |
| Msa0223910 | Msa0953340 | 0.806975 | 6.334853e-50 | -8.615850e-47 |
| Msa0387050 | Msa0953340 | 0.806136 | 9.523672e-50 | -8.615850e-47 |
| Msa0433410 | Msa0953340 | -0.801375 | 9.273653e-49 | -8.615850e-47 |
| Msa0455760 | Msa0953340 | 0.802257 | 6.111633e-49 | -8.615850e-47 |
| Msa0471900 | Msa0953340 | 0.805242 | 1.467070e-49 | -8.615850e-47 |
| Msa0265150 | Msa0953340 | 0.830101 | 3.548726e-55 | -8.615850e-47 |
| Msa0284520 | Msa0953340 | 0.804465 | 2.132060e-49 | -8.615850e-47 |
| Msa0300150 | Msa0953340 | 0.800185 | 1.622566e-48 | -8.615850e-47 |
| Msa0319170 | Msa0953340 | 0.821950 | 3.074407e-53 | -8.615850e-47 |
| Msa0321080 | Msa0953340 | 0.805437 | 1.335646e-49 | -8.615850e-47 |
| Msa0326110 | Msa0953340 | 0.820420 | 6.923876e-53 | -8.615850e-47 |
| Msa0484780 | Msa0953340 | 0.802297 | 5.998925e-49 | -8.615850e-47 |
| Msa0485490 | Msa0953340 | 0.822434 | 2.373255e-53 | -8.615850e-47 |
| Msa0530650 | Msa0953340 | 0.839875 | 1.219596e-57 | -8.615850e-47 |
| Msa0574850 | Msa0953340 | 0.800732 | 1.255566e-48 | -8.615850e-47 |
| Msa0579130 | Msa0953340 | 0.808985 | 2.365751e-50 | -8.615850e-47 |
| Msa0587190 | Msa0953340 | 0.840451 | 8.627605e-58 | -8.615850e-47 |
| Msa0933100 | Msa0953340 | 0.807506 | 4.889600e-50 | -8.615850e-47 |
| Msa0936390 | Msa0953340 | 0.812135 | 4.935989e-51 | -8.615850e-47 |
| Msa0953340 | Msa1082500 | 0.810428 | 1.158445e-50 | -8.615850e-47 |
| Msa0953340 | Msa1096060 | 0.803031 | 4.232268e-49 | -8.615850e-47 |
| Msa0953340 | Msa1118110 | 0.803197 | 3.910884e-49 | -8.615850e-47 |
| Msa0953340 | Msa1270660 | 0.815685 | 8.143571e-52 | -8.615850e-47 |
| Msa0953340 | Msa1270730 | 0.825801 | 3.844434e-54 | -8.615850e-47 |
| Msa0953340 | Msa1335230 | 0.810715 | 1.004268e-50 | -8.615850e-47 |
| Msa0953340 | Msa1372150 | 0.811176 | 7.981143e-51 | -8.615850e-47 |
| Msa0953340 | Msa1407600 | 0.816898 | 4.360530e-52 | -8.615850e-47 |
| Msa0953340 | Msa1423820 | 0.819519 | 1.113168e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953340 | MtrunA17_Chr3g0140091 | 69.737 | 76 | 23 | 0 | 69 | 144 | 164 | 239 | 1.54e-29 | 110 |
| Msa0953340 | MtrunA17_Chr4g0019621 | 65.789 | 76 | 26 | 0 | 69 | 144 | 67 | 142 | 6.71e-27 | 101 |
| Msa0953340 | MtrunA17_Chr8g0337041 | 94.000 | 50 | 3 | 0 | 1 | 50 | 1 | 50 | 9.12e-26 | 102 |
| Msa0953340 | MtrunA17_Chr8g0390251 | 62.162 | 74 | 28 | 0 | 71 | 144 | 163 | 236 | 2.05e-25 | 99.4 |
| Msa0953340 | MtrunA17_Chr6g0486631 | 59.459 | 74 | 30 | 0 | 71 | 144 | 164 | 237 | 2.81e-23 | 93.6 |
| Msa0953340 | MtrunA17_Chr2g0288571 | 51.351 | 74 | 36 | 0 | 72 | 145 | 100 | 173 | 2.57e-18 | 79.3 |
| Msa0953340 | MtrunA17_Chr7g0233071 | 84.000 | 50 | 8 | 0 | 1 | 50 | 1 | 50 | 1.03e-15 | 73.2 |
| Msa0953340 | MtrunA17_Chr4g0075001 | 40.541 | 74 | 44 | 0 | 72 | 145 | 78 | 151 | 9.32e-15 | 69.3 |
| Msa0953340 | MtrunA17_Chr1g0161391 | 66.000 | 50 | 12 | 1 | 1 | 50 | 1 | 45 | 9.69e-15 | 66.6 |
| Msa0953340 | MtrunA17_Chr4g0075021 | 40.541 | 74 | 44 | 0 | 72 | 145 | 95 | 168 | 1.52e-14 | 68.9 |
| Msa0953340 | MtrunA17_Chr8g0391891 | 66.000 | 50 | 12 | 1 | 1 | 50 | 1 | 45 | 9.58e-14 | 67.4 |
| Msa0953340 | MtrunA17_Chr8g0346971 | 60.870 | 46 | 15 | 1 | 4 | 49 | 1 | 43 | 1.07e-11 | 61.6 |
| Msa0953340 | MtrunA17_Chr5g0396561 | 39.773 | 88 | 37 | 3 | 4 | 91 | 1 | 72 | 1.36e-11 | 61.2 |
| Msa0953340 | MtrunA17_Chr8g0388271 | 40.909 | 88 | 35 | 3 | 4 | 91 | 1 | 71 | 1.97e-11 | 60.8 |
| Msa0953340 | MtrunA17_Chr4g0055051 | 63.830 | 47 | 14 | 1 | 4 | 50 | 1 | 44 | 3.58e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953340 | AT1G67280.2 | 67.568 | 74 | 24 | 0 | 71 | 144 | 78 | 151 | 1.31e-27 | 103 |
| Msa0953340 | AT1G67280.1 | 67.568 | 74 | 24 | 0 | 71 | 144 | 166 | 239 | 4.62e-27 | 103 |
| Msa0953340 | AT1G11840.5 | 54.795 | 73 | 33 | 0 | 72 | 144 | 96 | 168 | 3.28e-21 | 86.3 |
| Msa0953340 | AT1G11840.4 | 54.054 | 74 | 34 | 0 | 72 | 145 | 96 | 169 | 5.00e-21 | 87.0 |
| Msa0953340 | AT1G11840.1 | 54.054 | 74 | 34 | 0 | 72 | 145 | 96 | 169 | 5.00e-21 | 87.0 |
| Msa0953340 | AT1G11840.3 | 54.054 | 74 | 34 | 0 | 72 | 145 | 96 | 169 | 5.00e-21 | 87.0 |
| Msa0953340 | AT1G11840.2 | 54.054 | 74 | 34 | 0 | 72 | 145 | 96 | 169 | 5.00e-21 | 87.0 |
| Msa0953340 | AT1G11840.6 | 54.795 | 73 | 33 | 0 | 72 | 144 | 135 | 207 | 9.25e-21 | 86.7 |
| Msa0953340 | AT3G60190.1 | 76.000 | 50 | 12 | 0 | 1 | 50 | 1 | 50 | 1.53e-19 | 84.7 |
| Msa0953340 | AT1G14830.1 | 64.000 | 50 | 13 | 1 | 1 | 50 | 1 | 45 | 1.10e-13 | 67.8 |
| Msa0953340 | AT2G44590.3 | 72.340 | 47 | 11 | 2 | 4 | 50 | 1 | 45 | 2.16e-13 | 67.0 |
| Msa0953340 | AT2G44590.2 | 72.340 | 47 | 11 | 2 | 4 | 50 | 1 | 45 | 2.17e-13 | 67.0 |
| Msa0953340 | AT2G44590.1 | 72.340 | 47 | 11 | 2 | 4 | 50 | 1 | 45 | 2.19e-13 | 67.0 |
| Msa0953340 | AT3G61760.3 | 35.780 | 109 | 48 | 4 | 4 | 107 | 1 | 92 | 3.29e-12 | 63.5 |
| Msa0953340 | AT3G61760.2 | 35.780 | 109 | 48 | 4 | 4 | 107 | 1 | 92 | 3.79e-12 | 63.5 |
| Msa0953340 | AT3G61760.1 | 35.780 | 109 | 48 | 4 | 4 | 107 | 1 | 92 | 3.79e-12 | 63.5 |
| Msa0953340 | AT5G42080.4 | 37.273 | 110 | 46 | 5 | 4 | 107 | 1 | 93 | 8.11e-12 | 62.4 |
| Msa0953340 | AT5G42080.1 | 37.273 | 110 | 46 | 5 | 4 | 107 | 1 | 93 | 8.11e-12 | 62.4 |
| Msa0953340 | AT5G42080.3 | 37.273 | 110 | 46 | 5 | 4 | 107 | 1 | 93 | 8.50e-12 | 62.4 |
| Msa0953340 | AT5G42080.2 | 59.574 | 47 | 16 | 1 | 4 | 50 | 1 | 44 | 8.80e-12 | 62.4 |
Find 73 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGCTTAGGGTTTGAATTT+TGG | 0.142634 | 6_3:+49561276 | None:intergenic |
| TGGTTATAGGTTTGAGCTTT+TGG | 0.170730 | 6_3:-49559009 | Msa0953340:CDS |
| TGTAGTTCGTTAGAGTTAAT+TGG | 0.198536 | 6_3:+49556948 | None:intergenic |
| TCTCTCTTCTGCTAAATTCT+AGG | 0.229312 | 6_3:-49561020 | Msa0953340:five_prime_UTR |
| GGAGCGGGGAGAGTGAAATT+TGG | 0.233153 | 6_3:+49561298 | None:intergenic |
| TTGAAGTTCCTAGTGGTTAT+AGG | 0.278164 | 6_3:-49559022 | Msa0953340:CDS |
| TTCAGGGAAATCTTCGGTTT+TGG | 0.304850 | 6_3:-49560711 | Msa0953340:CDS |
| TGGAGATGAGAACAGAGTTC+AGG | 0.339919 | 6_3:-49560728 | Msa0953340:intron |
| CAGTTGAAGTTTCTGTCTTC+CGG | 0.342217 | 6_3:+49557016 | None:intergenic |
| TTTGTTTGAAACTTCATATC+TGG | 0.351369 | 6_3:+49557514 | None:intergenic |
| AGTTTCTGAGGTTCACCATT+TGG | 0.361811 | 6_3:+49557250 | None:intergenic |
| CTCTCTTCTGCTAAATTCTA+GGG | 0.363845 | 6_3:-49561019 | Msa0953340:five_prime_UTR |
| TTGAAGCATCACTTTGCATA+AGG | 0.376818 | 6_3:+49558965 | None:intergenic |
| TGAGGTTCACCATTTGGAAT+AGG | 0.377245 | 6_3:+49557256 | None:intergenic |
| TAGCCAAGTCTCTAACAATA+AGG | 0.378375 | 6_3:-49557217 | Msa0953340:three_prime_UTR |
| CGAGTTTAGTACAAGCTTGT+TGG | 0.379634 | 6_3:+49560919 | None:intergenic |
| CTTCTTCGTGATGACGACTA+TGG | 0.382344 | 6_3:-49560970 | Msa0953340:exon |
| TGAAGCATCACTTTGCATAA+GGG | 0.403755 | 6_3:+49558966 | None:intergenic |
| TCACTGTATATCTCATAGAT+TGG | 0.413238 | 6_3:-49557058 | Msa0953340:three_prime_UTR |
| TGTACTAAACTCGGTGACTA+TGG | 0.413767 | 6_3:-49560909 | Msa0953340:CDS |
| ACGACTATGGAAAGCTTAAT+CGG | 0.423389 | 6_3:-49560957 | Msa0953340:CDS |
| ATTAGTGACCGGAGGGTGTA+TGG | 0.427012 | 6_3:-49556798 | Msa0953340:intron |
| GGAGATGAGAACAGAGTTCA+GGG | 0.433664 | 6_3:-49560727 | Msa0953340:intron |
| GAGATGAAGATTGGAGGCTT+AGG | 0.433938 | 6_3:+49561263 | None:intergenic |
| CTAGTCGTGTTTGACGGAAA+TGG | 0.434094 | 6_3:+49561091 | None:intergenic |
| TTTAGCAGAAGAGAGAAAAT+CGG | 0.435626 | 6_3:+49561027 | None:intergenic |
| CGTCGCCGTCGTCGGTGGTC+AGG | 0.436482 | 6_3:-49560835 | Msa0953340:intron |
| GAGCGGGGAGAGTGAAATTT+GGG | 0.440094 | 6_3:+49561299 | None:intergenic |
| AGATGAAGATTGGAGGCTTA+GGG | 0.444572 | 6_3:+49561264 | None:intergenic |
| TCAGCAATTATAATTGAGAA+AGG | 0.454123 | 6_3:-49557468 | Msa0953340:intron |
| AGATTGACTGAGATGAAGAT+TGG | 0.461552 | 6_3:+49561254 | None:intergenic |
| GTGAAGAAAGAGAGAATAAA+CGG | 0.462467 | 6_3:+49561049 | None:intergenic |
| GACTTTCTACCTAGAGGATC+AGG | 0.470180 | 6_3:-49560671 | Msa0953340:intron |
| GAGCCTTATTGTTAGAGACT+TGG | 0.473851 | 6_3:+49557214 | None:intergenic |
| GAACCATCTTTGACAGGCTC+CGG | 0.479569 | 6_3:+49559062 | None:intergenic |
| GGAGAGTGAAATTTGGGAGC+GGG | 0.484839 | 6_3:+49561305 | None:intergenic |
| ACAGAGTTCAGGGAAATCTT+CGG | 0.489500 | 6_3:-49560717 | Msa0953340:CDS |
| ATTGTAGAACCATCTTTGAC+AGG | 0.495723 | 6_3:+49559056 | None:intergenic |
| GGTGAACCTCAGAAACTAGT+AGG | 0.495867 | 6_3:-49557244 | Msa0953340:three_prime_UTR |
| CTTCCTTCCGTCGCCGTCGT+CGG | 0.497429 | 6_3:-49560843 | Msa0953340:CDS |
| CTTTACAAGATTTACCGTCT+TGG | 0.506222 | 6_3:+49559112 | None:intergenic |
| AAGAATGTACCTATTCCAAA+TGG | 0.511387 | 6_3:-49557265 | Msa0953340:three_prime_UTR |
| TATGGAAAGCTTAATCGGCT+TGG | 0.517895 | 6_3:-49560952 | Msa0953340:CDS |
| TTGCATAAGGGTTCGCGAGT+AGG | 0.520825 | 6_3:+49558978 | None:intergenic |
| AGAGGTGATGAAAGAGATTG+AGG | 0.526221 | 6_3:+49561213 | None:intergenic |
| CAAGACGGTAAATCTTGTAA+AGG | 0.530846 | 6_3:-49559111 | Msa0953340:CDS |
| TCTAGACTAGTCGTGTTTGA+CGG | 0.531503 | 6_3:+49561085 | None:intergenic |
| TACCTTCCTACTAGTTTCTG+AGG | 0.533806 | 6_3:+49557238 | None:intergenic |
| TTGACTGAGATGAAGATTGG+AGG | 0.538263 | 6_3:+49561257 | None:intergenic |
| CCACCGACGACGGCGACGGA+AGG | 0.540811 | 6_3:+49560840 | None:intergenic |
| TTTATGAGATTAAGCATGAG+AGG | 0.550185 | 6_3:+49561195 | None:intergenic |
| GGGAAAGGTTACGAGAGAAC+CGG | 0.551287 | 6_3:-49559081 | Msa0953340:CDS |
| GAACCGGAGCCTGTCAAAGA+TGG | 0.553158 | 6_3:-49559065 | Msa0953340:CDS |
| CAACAAGCTTGTACTAAACT+CGG | 0.559054 | 6_3:-49560918 | Msa0953340:CDS |
| CCTTCCGTCGCCGTCGTCGG+TGG | 0.566292 | 6_3:-49560840 | Msa0953340:CDS |
| GTCTCTAACAATAAGGCTCT+AGG | 0.569440 | 6_3:-49557210 | Msa0953340:intron |
| GAAAGAGAACCTGATCCTCT+AGG | 0.571498 | 6_3:+49560662 | None:intergenic |
| AACTTACGAGGCAATTAGCA+TGG | 0.589880 | 6_3:+49556973 | None:intergenic |
| AGACAGAAACTTCAACTGCT+AGG | 0.597746 | 6_3:-49557011 | Msa0953340:three_prime_UTR |
| GAGGTGATGAAAGAGATTGA+GGG | 0.600809 | 6_3:+49561214 | None:intergenic |
| GGGAGAGTGAAATTTGGGAG+CGG | 0.606387 | 6_3:+49561304 | None:intergenic |
| AACCTCAGAAACTAGTAGGA+AGG | 0.610415 | 6_3:-49557240 | Msa0953340:three_prime_UTR |
| AGAATACGAAGGTGATAACA+TGG | 0.611042 | 6_3:+49561118 | None:intergenic |
| CTGACCACCGACGACGGCGA+CGG | 0.615422 | 6_3:+49560836 | None:intergenic |
| ACAGATGCAGCTAATATAGA+CGG | 0.620339 | 6_3:+49556759 | None:intergenic |
| AGTTAATTGGAGAACTTACG+AGG | 0.639744 | 6_3:+49556961 | None:intergenic |
| CGGTACCTGACCACCGACGA+CGG | 0.644181 | 6_3:+49560830 | None:intergenic |
| AGCTCAAACCTATAACCACT+AGG | 0.647923 | 6_3:+49559014 | None:intergenic |
| GAGAGTGAAATTTGGGAGCG+GGG | 0.650581 | 6_3:+49561306 | None:intergenic |
| TGCAAAGTGATGCTTCAAGT+AGG | 0.661452 | 6_3:-49558960 | Msa0953340:CDS |
| GGACGTGACTTTCTACCTAG+AGG | 0.662283 | 6_3:-49560677 | Msa0953340:CDS |
| ACTAAACTCGGTGACTATGG+CGG | 0.703039 | 6_3:-49560906 | Msa0953340:CDS |
| GAAATGGAAGAAGAATACGA+AGG | 0.789460 | 6_3:+49561107 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATGAAATTCAATATT+TGG | + | chr6_3:49557242-49557261 | None:intergenic | 10.0% |
| !! | AAAAAACGTAAAAATGAAAA+AGG | + | chr6_3:49557399-49557418 | None:intergenic | 15.0% |
| !!! | TGATTTTTTTCTATATACTT+TGG | - | chr6_3:49558270-49558289 | Msa0953340:intron | 15.0% |
| !! | TTAATTGAATCATGAAAAAT+GGG | - | chr6_3:49558674-49558693 | Msa0953340:intron | 15.0% |
| !!! | CTGTAATATTTTAAATTCTA+AGG | - | chr6_3:49559669-49559688 | Msa0953340:intron | 15.0% |
| !! | AAAACCTATAAATTTGTAAT+TGG | + | chr6_3:49559916-49559935 | None:intergenic | 15.0% |
| !!! | ATTACAAATTTATAGGTTTT+AGG | - | chr6_3:49559916-49559935 | Msa0953340:intron | 15.0% |
| !! | AGATAATAAACTTAAAAACA+TGG | - | chr6_3:49560072-49560091 | Msa0953340:intron | 15.0% |
| !!! | TCAATTTTAAGGTAATTTTT+GGG | + | chr6_3:49560115-49560134 | None:intergenic | 15.0% |
| !!! | TTCAATTTTAAGGTAATTTT+TGG | + | chr6_3:49560116-49560135 | None:intergenic | 15.0% |
| !!! | GATTAGTTATTTCAATTTTA+AGG | + | chr6_3:49560126-49560145 | None:intergenic | 15.0% |
| !!! | TAAGCAAAAATTCAATTTTT+AGG | + | chr6_3:49561211-49561230 | None:intergenic | 15.0% |
| !! | AATGAAATTCAATATTTGGA+AGG | + | chr6_3:49557238-49557257 | None:intergenic | 20.0% |
| !!! | TAGTAATTTATTTTGGTTTG+TGG | - | chr6_3:49557435-49557454 | Msa0953340:intron | 20.0% |
| !! | AAAATAAGTTGTTTATCTGA+AGG | + | chr6_3:49557476-49557495 | None:intergenic | 20.0% |
| !!! | ATTTGTTATTTTGTGTGTTT+AGG | - | chr6_3:49557885-49557904 | Msa0953340:intron | 20.0% |
| !! | GTTAATTGAATCATGAAAAA+TGG | - | chr6_3:49558673-49558692 | Msa0953340:intron | 20.0% |
| !! | TTAGTTATGTTAATTGATCA+TGG | - | chr6_3:49558721-49558740 | Msa0953340:intron | 20.0% |
| !! | GATCAATTAACAAAATCAAA+AGG | + | chr6_3:49558786-49558805 | None:intergenic | 20.0% |
| !! | ATATTAAATCATCACTAGTT+TGG | - | chr6_3:49558814-49558833 | Msa0953340:intron | 20.0% |
| !! | TAAATCTTGTAAAGGAAAAA+AGG | - | chr6_3:49558927-49558946 | Msa0953340:CDS | 20.0% |
| !! | AAATCTTGTAAAGGAAAAAA+GGG | - | chr6_3:49558928-49558947 | Msa0953340:CDS | 20.0% |
| !! | AAAAATCATATAAAACCTCA+GGG | + | chr6_3:49559272-49559291 | None:intergenic | 20.0% |
| !! | TAAAAATCATATAAAACCTC+AGG | + | chr6_3:49559273-49559292 | None:intergenic | 20.0% |
| !!! | GGTTTTATATGATTTTTACA+TGG | - | chr6_3:49559275-49559294 | Msa0953340:intron | 20.0% |
| !! | AACATCCATATGAAAAATAA+AGG | + | chr6_3:49559489-49559508 | None:intergenic | 20.0% |
| !!! | AATATTTTAAATTCTAAGGC+CGG | - | chr6_3:49559673-49559692 | Msa0953340:intron | 20.0% |
| !! | TACACCAATTACAAATTTAT+AGG | - | chr6_3:49559909-49559928 | Msa0953340:intron | 20.0% |
| !!! | TTTTATTGCTTATCTTTGTT+TGG | - | chr6_3:49560306-49560325 | Msa0953340:intron | 20.0% |
| !! | TCAAAATCTAGAAATACAAA+AGG | + | chr6_3:49560859-49560878 | None:intergenic | 20.0% |
| !!! | TTTGTATTTCTAGATTTTGA+AGG | - | chr6_3:49560859-49560878 | Msa0953340:CDS | 20.0% |
| !! | ATGTATGTAGTCTTTATTAT+AGG | + | chr6_3:49561173-49561192 | None:intergenic | 20.0% |
| !!! | AATTTTGTTTGTGAGATTGA+GGG | + | chr6_3:49556871-49556890 | None:intergenic | 25.0% |
| ! | ACAAAATTCAGCAAAAAGTT+TGG | - | chr6_3:49556883-49556902 | Msa0953340:intron | 25.0% |
| !! | ATTATTTTCATGAACTCTTC+AGG | + | chr6_3:49557606-49557625 | None:intergenic | 25.0% |
| ! | ACTTTGGTTATGTATATTCA+TGG | - | chr6_3:49558286-49558305 | Msa0953340:intron | 25.0% |
| !! | TTTTCTTGTTAAGTGAATCA+TGG | - | chr6_3:49558494-49558513 | Msa0953340:intron | 25.0% |
| ! | TTGTTCCATTAATTGAATCA+TGG | - | chr6_3:49558580-49558599 | Msa0953340:intron | 25.0% |
| ! | ATTTGCCATGATTCAATTAA+TGG | + | chr6_3:49558588-49558607 | None:intergenic | 25.0% |
| ! | ATTAATTGAATCATGGCAAA+TGG | - | chr6_3:49558587-49558606 | Msa0953340:intron | 25.0% |
| ! | TTAATTGAATCATGGCAAAT+GGG | - | chr6_3:49558588-49558607 | Msa0953340:intron | 25.0% |
| ! | AATCTTGTAAAGGAAAAAAG+GGG | - | chr6_3:49558929-49558948 | Msa0953340:CDS | 25.0% |
| !!! | TACACTTACTTTTTCATAGA+AGG | + | chr6_3:49559116-49559135 | None:intergenic | 25.0% |
| ! | CTTGTCTTTGTTAATTTCAA+AGG | - | chr6_3:49559212-49559231 | Msa0953340:intron | 25.0% |
| !!! | AAAAATAAAGGCACTAAAAC+AGG | + | chr6_3:49559477-49559496 | None:intergenic | 25.0% |
| !!! | TAGTGCCTTTATTTTTCATA+TGG | - | chr6_3:49559481-49559500 | Msa0953340:intron | 25.0% |
| !! | TTTTTCATATGGATGTTGTT+AGG | - | chr6_3:49559492-49559511 | Msa0953340:intron | 25.0% |
| ! | TATAAAGTTGACATCTAAGT+AGG | - | chr6_3:49559557-49559576 | Msa0953340:intron | 25.0% |
| !! | TTTTCCAATCATACAAAAGA+TGG | + | chr6_3:49559863-49559882 | None:intergenic | 25.0% |
| ! | GATAAGCAATAAAAATGACA+AGG | + | chr6_3:49560300-49560319 | None:intergenic | 25.0% |
| ! | AAAAGCTAAAAAGCTTAGTA+TGG | - | chr6_3:49560404-49560423 | Msa0953340:intron | 25.0% |
| !! | TTTGTTTGAAACTTCATATC+TGG | + | chr6_3:49560519-49560538 | None:intergenic | 25.0% |
| ! | TCAGCAATTATAATTGAGAA+AGG | - | chr6_3:49560562-49560581 | Msa0953340:intron | 25.0% |
| !!! | TTATAATTGAGAAAGGTATC+AGG | - | chr6_3:49560569-49560588 | Msa0953340:intron | 25.0% |
| !!! | TATAATTGAGAAAGGTATCA+GGG | - | chr6_3:49560570-49560589 | Msa0953340:intron | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | - | chr6_3:49561221-49561240 | Msa0953340:five_prime_UTR | 25.0% |
| TTTATGAGATTAAGCATGAG+AGG | + | chr6_3:49556838-49556857 | None:intergenic | 30.0% | |
| !! | GAATTTTGTTTGTGAGATTG+AGG | + | chr6_3:49556872-49556891 | None:intergenic | 30.0% |
| !!! | AGAGAGAATAAACGGTTTTT+TGG | + | chr6_3:49556976-49556995 | None:intergenic | 30.0% |
| GTGAAGAAAGAGAGAATAAA+CGG | + | chr6_3:49556984-49557003 | None:intergenic | 30.0% | |
| TTTAGCAGAAGAGAGAAAAT+CGG | + | chr6_3:49557006-49557025 | None:intergenic | 30.0% | |
| ! | TTCGACACATGTAAGTTTTA+TGG | - | chr6_3:49557821-49557840 | Msa0953340:intron | 30.0% |
| TTATGTGTACGTGTATGTTA+TGG | - | chr6_3:49557990-49558009 | Msa0953340:intron | 30.0% | |
| TATGTGTACGTGTATGTTAT+GGG | - | chr6_3:49557991-49558010 | Msa0953340:intron | 30.0% | |
| TACATACTTTCGACATACAT+AGG | + | chr6_3:49558093-49558112 | None:intergenic | 30.0% | |
| TTGAGACATAAGTTAAGAAG+TGG | + | chr6_3:49558235-49558254 | None:intergenic | 30.0% | |
| AAGCAAGTATCTTACAATAG+TGG | - | chr6_3:49558357-49558376 | Msa0953340:intron | 30.0% | |
| !! | GCAATTTTTAGACACCATTT+TGG | + | chr6_3:49558391-49558410 | None:intergenic | 30.0% |
| ACAACACAAATTCATGTACA+TGG | + | chr6_3:49558436-49558455 | None:intergenic | 30.0% | |
| TTAAGTGAATCATGGCAAAT+GGG | - | chr6_3:49558502-49558521 | Msa0953340:intron | 30.0% | |
| GGTTAAGTTATGAGAAAGAA+GGG | - | chr6_3:49558523-49558542 | Msa0953340:intron | 30.0% | |
| !! | AAATGGGTTATGAGAAAGAA+CGG | - | chr6_3:49558604-49558623 | Msa0953340:intron | 30.0% |
| AATCAAAAGGCAAATGATTC+AGG | + | chr6_3:49558773-49558792 | None:intergenic | 30.0% | |
| TTGTTAATTTCAAAGGCTGT+TGG | - | chr6_3:49559219-49559238 | Msa0953340:intron | 30.0% | |
| TGTTAATTTCAAAGGCTGTT+GGG | - | chr6_3:49559220-49559239 | Msa0953340:intron | 30.0% | |
| CTACACACTTGTCATATAAA+TGG | + | chr6_3:49559396-49559415 | None:intergenic | 30.0% | |
| CAAGTGTGTAGCTTATTTAT+TGG | - | chr6_3:49559405-49559424 | Msa0953340:intron | 30.0% | |
| ! | TGAGTTGTTATTCATGATGT+GGG | - | chr6_3:49559442-49559461 | Msa0953340:intron | 30.0% |
| ! | TATAAGCCAATGCATTGATA+TGG | - | chr6_3:49559646-49559665 | Msa0953340:intron | 30.0% |
| GAGTTGAGTATATTTATCAC+CGG | + | chr6_3:49559695-49559714 | None:intergenic | 30.0% | |
| ATAGTATTAGTGTCAACTTG+CGG | - | chr6_3:49559784-49559803 | Msa0953340:intron | 30.0% | |
| TCATATCTTAAGATAAGAGG+AGG | + | chr6_3:49560171-49560190 | None:intergenic | 30.0% | |
| GCATCATATCTTAAGATAAG+AGG | + | chr6_3:49560174-49560193 | None:intergenic | 30.0% | |
| TAGTGATCCTATGAAATCAT+TGG | - | chr6_3:49560221-49560240 | Msa0953340:intron | 30.0% | |
| TTTGGTCTCAGGTATATTAT+AGG | - | chr6_3:49560324-49560343 | Msa0953340:intron | 30.0% | |
| CAAACCTAATTTACAAACAG+TGG | + | chr6_3:49560472-49560491 | None:intergenic | 30.0% | |
| TACATTCTTAACCTGTAACA+TGG | + | chr6_3:49560754-49560773 | None:intergenic | 30.0% | |
| AAGAATGTACCTATTCCAAA+TGG | - | chr6_3:49560765-49560784 | Msa0953340:intron | 30.0% | |
| !!! | ACTTTGTTTTCAGGTTTCTA+AGG | - | chr6_3:49560919-49560938 | Msa0953340:CDS | 30.0% |
| TCACTGTATATCTCATAGAT+TGG | - | chr6_3:49560972-49560991 | Msa0953340:exon | 30.0% | |
| TTTCTCTCCAAAAATTACAC+CGG | - | chr6_3:49560995-49561014 | Msa0953340:five_prime_UTR | 30.0% | |
| TGTAGTTCGTTAGAGTTAAT+TGG | + | chr6_3:49561085-49561104 | None:intergenic | 30.0% | |
| ! | GTTTTGCTTATATTAGTGAC+CGG | + | chr6_3:49561112-49561131 | None:intergenic | 30.0% |
| TATTGAATGAACCTAGAAAG+TGG | + | chr6_3:49561136-49561155 | None:intergenic | 30.0% | |
| !!! | TTGTGTTTTTTTTCGCAAGA+TGG | - | chr6_3:49561293-49561312 | Msa0953340:five_prime_UTR | 30.0% |
| ! | AGGCTTAGGGTTTGAATTTT+GGG | + | chr6_3:49556756-49556775 | None:intergenic | 35.0% |
| AGATTGACTGAGATGAAGAT+TGG | + | chr6_3:49556779-49556798 | None:intergenic | 35.0% | |
| ! | GTGAGATTGAGGGAATTTTA+GGG | + | chr6_3:49556861-49556880 | None:intergenic | 35.0% |
| ! | TGTGAGATTGAGGGAATTTT+AGG | + | chr6_3:49556862-49556881 | None:intergenic | 35.0% |
| AGAATACGAAGGTGATAACA+TGG | + | chr6_3:49556915-49556934 | None:intergenic | 35.0% | |
| GAAATGGAAGAAGAATACGA+AGG | + | chr6_3:49556926-49556945 | None:intergenic | 35.0% | |
| TCTCTCTTCTGCTAAATTCT+AGG | - | chr6_3:49557010-49557029 | Msa0953340:three_prime_UTR | 35.0% | |
| CTCTCTTCTGCTAAATTCTA+GGG | - | chr6_3:49557011-49557030 | Msa0953340:three_prime_UTR | 35.0% | |
| ACGACTATGGAAAGCTTAAT+CGG | - | chr6_3:49557073-49557092 | Msa0953340:three_prime_UTR | 35.0% | |
| CAACAAGCTTGTACTAAACT+CGG | - | chr6_3:49557112-49557131 | Msa0953340:intron | 35.0% | |
| !!! | ACAGCACTTTTTCTTCTCTT+TGG | - | chr6_3:49557158-49557177 | Msa0953340:intron | 35.0% |
| !!! | CAGCACTTTTTCTTCTCTTT+GGG | - | chr6_3:49557159-49557178 | Msa0953340:intron | 35.0% |
| CTATGAAATTCTGACACATG+AGG | - | chr6_3:49557641-49557660 | Msa0953340:intron | 35.0% | |
| ! | AATTCTGACACATGAGGTTT+TGG | - | chr6_3:49557647-49557666 | Msa0953340:intron | 35.0% |
| ! | ATTCTGACACATGAGGTTTT+GGG | - | chr6_3:49557648-49557667 | Msa0953340:intron | 35.0% |
| ! | CTGGTTTGAGATAAGTGATA+AGG | - | chr6_3:49557679-49557698 | Msa0953340:intron | 35.0% |
| ! | GTTTGAGATAAGTGATAAGG+AGG | - | chr6_3:49557682-49557701 | Msa0953340:intron | 35.0% |
| TTCTCCTTTGTGTTTGATTG+TGG | - | chr6_3:49557744-49557763 | Msa0953340:intron | 35.0% | |
| GGCAATAAATGAAAGAGCTT+TGG | - | chr6_3:49557787-49557806 | Msa0953340:intron | 35.0% | |
| ! | ATAAATGAAAGAGCTTTGGC+TGG | - | chr6_3:49557791-49557810 | Msa0953340:intron | 35.0% |
| CTTGTTGATGTATCAGTTCA+AGG | + | chr6_3:49558340-49558359 | None:intergenic | 35.0% | |
| GTTAAGTGAATCATGGCAAA+TGG | - | chr6_3:49558501-49558520 | Msa0953340:intron | 35.0% | |
| GGGTTAAGTTATGAGAAAGA+AGG | - | chr6_3:49558522-49558541 | Msa0953340:intron | 35.0% | |
| !! | GATTTTTCAGATTGCCAAGA+CGG | - | chr6_3:49558904-49558923 | Msa0953340:intron | 35.0% |
| CTTTACAAGATTTACCGTCT+TGG | + | chr6_3:49558921-49558940 | None:intergenic | 35.0% | |
| CAAGACGGTAAATCTTGTAA+AGG | - | chr6_3:49558919-49558938 | Msa0953340:intron | 35.0% | |
| TGTAAAGGAAAAAAGGGGAA+AGG | - | chr6_3:49558934-49558953 | Msa0953340:CDS | 35.0% | |
| ATTGTAGAACCATCTTTGAC+AGG | + | chr6_3:49558977-49558996 | None:intergenic | 35.0% | |
| ! | GCTTTTATTGAAGTTCCTAG+TGG | - | chr6_3:49559001-49559020 | Msa0953340:CDS | 35.0% |
| TTGAAGTTCCTAGTGGTTAT+AGG | - | chr6_3:49559008-49559027 | Msa0953340:CDS | 35.0% | |
| ! | TGGTTATAGGTTTGAGCTTT+TGG | - | chr6_3:49559021-49559040 | Msa0953340:CDS | 35.0% |
| ! | GGTTATAGGTTTGAGCTTTT+GGG | - | chr6_3:49559022-49559041 | Msa0953340:CDS | 35.0% |
| ! | GTTATAGGTTTGAGCTTTTG+GGG | - | chr6_3:49559023-49559042 | Msa0953340:CDS | 35.0% |
| ! | TGAAGCATCACTTTGCATAA+GGG | + | chr6_3:49559067-49559086 | None:intergenic | 35.0% |
| ! | TTGAAGCATCACTTTGCATA+AGG | + | chr6_3:49559068-49559087 | None:intergenic | 35.0% |
| TGACATGCATTATACATTCG+TGG | + | chr6_3:49559305-49559324 | None:intergenic | 35.0% | |
| GTGTTTGAACAGATTGCAAT+AGG | - | chr6_3:49559346-49559365 | Msa0953340:intron | 35.0% | |
| ! | GTGAGTTGTTATTCATGATG+TGG | - | chr6_3:49559441-49559460 | Msa0953340:intron | 35.0% |
| ! | TAGGTGACTTTTGTCAATCT+AGG | - | chr6_3:49559511-49559530 | Msa0953340:intron | 35.0% |
| AGGCATTCATCTGATTATTC+TGG | - | chr6_3:49559613-49559632 | Msa0953340:intron | 35.0% | |
| TTACAGCCATATCAATGCAT+TGG | + | chr6_3:49559655-49559674 | None:intergenic | 35.0% | |
| ! | GCTTCATGTGAATTTCTAGA+AGG | + | chr6_3:49559995-49560014 | None:intergenic | 35.0% |
| AGATGATAGCTTTCACAAAG+AGG | + | chr6_3:49560148-49560167 | None:intergenic | 35.0% | |
| TCAGCCACTGTTTGTAAATT+AGG | - | chr6_3:49560465-49560484 | Msa0953340:intron | 35.0% | |
| ! | GAATGTTTTCGTAGTTGTTG+TGG | - | chr6_3:49560630-49560649 | Msa0953340:intron | 35.0% |
| GTTGTGGTTTCATATACATG+TGG | - | chr6_3:49560646-49560665 | Msa0953340:intron | 35.0% | |
| !!! | GTGGTTTTAGTAATCAGTTG+AGG | - | chr6_3:49560665-49560684 | Msa0953340:intron | 35.0% |
| TAGCCAAGTCTCTAACAATA+AGG | - | chr6_3:49560813-49560832 | Msa0953340:intron | 35.0% | |
| !!! | TTGCGTTGAACTTTGTTTTC+AGG | - | chr6_3:49560910-49560929 | Msa0953340:CDS | 35.0% |
| AGTTAATTGGAGAACTTACG+AGG | + | chr6_3:49561072-49561091 | None:intergenic | 35.0% | |
| TAAGCAAAACTCCACTTTCT+AGG | - | chr6_3:49561122-49561141 | Msa0953340:five_prime_UTR | 35.0% | |
| TTAATAAACCATACACCCTC+CGG | + | chr6_3:49561243-49561262 | None:intergenic | 35.0% | |
| ACAGATGCAGCTAATATAGA+CGG | + | chr6_3:49561274-49561293 | None:intergenic | 35.0% | |
| !!! | TTTTTTCGCAAGATGGACAT+TGG | - | chr6_3:49561300-49561319 | Msa0953340:five_prime_UTR | 35.0% |
| !! | TAGGGTTTGAATTTTGGGAG+CGG | + | chr6_3:49556751-49556770 | None:intergenic | 40.0% |
| ! | GAGGCTTAGGGTTTGAATTT+TGG | + | chr6_3:49556757-49556776 | None:intergenic | 40.0% |
| AGATGAAGATTGGAGGCTTA+GGG | + | chr6_3:49556769-49556788 | None:intergenic | 40.0% | |
| TTGACTGAGATGAAGATTGG+AGG | + | chr6_3:49556776-49556795 | None:intergenic | 40.0% | |
| GAGGTGATGAAAGAGATTGA+GGG | + | chr6_3:49556819-49556838 | None:intergenic | 40.0% | |
| AGAGGTGATGAAAGAGATTG+AGG | + | chr6_3:49556820-49556839 | None:intergenic | 40.0% | |
| ! | TCTAGACTAGTCGTGTTTGA+CGG | + | chr6_3:49556948-49556967 | None:intergenic | 40.0% |
| TATGGAAAGCTTAATCGGCT+TGG | - | chr6_3:49557078-49557097 | Msa0953340:three_prime_UTR | 40.0% | |
| CGAGTTTAGTACAAGCTTGT+TGG | + | chr6_3:49557114-49557133 | None:intergenic | 40.0% | |
| ! | TGTACTAAACTCGGTGACTA+TGG | - | chr6_3:49557121-49557140 | Msa0953340:intron | 40.0% |
| !! | TTGGAAGGTTCTAGAAGCAA+CGG | + | chr6_3:49557223-49557242 | None:intergenic | 40.0% |
| ACAGAGTTCAGGGAAATCTT+CGG | - | chr6_3:49557313-49557332 | Msa0953340:intron | 40.0% | |
| ! | TTCAGGGAAATCTTCGGTTT+TGG | - | chr6_3:49557319-49557338 | Msa0953340:intron | 40.0% |
| AAGTGATAAGGAGGAGTTAG+AGG | - | chr6_3:49557691-49557710 | Msa0953340:intron | 40.0% | |
| CAAGCCACAATCAAACACAA+AGG | + | chr6_3:49557751-49557770 | None:intergenic | 40.0% | |
| ATTGTGGCTTGAAAAGCTTG+AGG | - | chr6_3:49557760-49557779 | Msa0953340:intron | 40.0% | |
| GTATCTTACAATAGTGGCCT+TGG | - | chr6_3:49558363-49558382 | Msa0953340:intron | 40.0% | |
| ! | TAGACACCATTTTGGATCCA+AGG | + | chr6_3:49558383-49558402 | None:intergenic | 40.0% |
| CTCTGTACATGAATGTGTGT+TGG | - | chr6_3:49558410-49558429 | Msa0953340:intron | 40.0% | |
| CTAAGAAGTGAGAAACCCAA+CGG | + | chr6_3:49558705-49558724 | None:intergenic | 40.0% | |
| AGCTCAAACCTATAACCACT+AGG | + | chr6_3:49559019-49559038 | None:intergenic | 40.0% | |
| TGCAAAGTGATGCTTCAAGT+AGG | - | chr6_3:49559070-49559089 | Msa0953340:CDS | 40.0% | |
| CATGCATTATACATTCGTGG+AGG | + | chr6_3:49559302-49559321 | None:intergenic | 40.0% | |
| CACAATGCATCTAGCTAGAT+AGG | - | chr6_3:49559593-49559612 | Msa0953340:intron | 40.0% | |
| ! | GCTGCCATCTTTTGTATGAT+TGG | - | chr6_3:49559856-49559875 | Msa0953340:intron | 40.0% |
| TGATGAAGATGCTTGCTTGT+AGG | - | chr6_3:49560020-49560039 | Msa0953340:intron | 40.0% | |
| TCTCACGCCAATGATTTCAT+AGG | + | chr6_3:49560231-49560250 | None:intergenic | 40.0% | |
| ! | GCTTATCTTTGTTTGGTCTC+AGG | - | chr6_3:49560313-49560332 | Msa0953340:intron | 40.0% |
| GTAACATGGACGTATCACAA+GGG | + | chr6_3:49560740-49560759 | None:intergenic | 40.0% | |
| TGTAACATGGACGTATCACA+AGG | + | chr6_3:49560741-49560760 | None:intergenic | 40.0% | |
| TTGTGATACGTCCATGTTAC+AGG | - | chr6_3:49560740-49560759 | Msa0953340:intron | 40.0% | |
| ! | TGAGGTTCACCATTTGGAAT+AGG | + | chr6_3:49560777-49560796 | None:intergenic | 40.0% |
| !! | AGTTTCTGAGGTTCACCATT+TGG | + | chr6_3:49560783-49560802 | None:intergenic | 40.0% |
| AACCTCAGAAACTAGTAGGA+AGG | - | chr6_3:49560790-49560809 | Msa0953340:intron | 40.0% | |
| ! | TACCTTCCTACTAGTTTCTG+AGG | + | chr6_3:49560795-49560814 | None:intergenic | 40.0% |
| !! | GAGCCTTATTGTTAGAGACT+TGG | + | chr6_3:49560819-49560838 | None:intergenic | 40.0% |
| GTCTCTAACAATAAGGCTCT+AGG | - | chr6_3:49560820-49560839 | Msa0953340:intron | 40.0% | |
| ! | CTGTCTTCCGGTGTAATTTT+TGG | + | chr6_3:49561005-49561024 | None:intergenic | 40.0% |
| CAGTTGAAGTTTCTGTCTTC+CGG | + | chr6_3:49561017-49561036 | None:intergenic | 40.0% | |
| AGACAGAAACTTCAACTGCT+AGG | - | chr6_3:49561019-49561038 | Msa0953340:five_prime_UTR | 40.0% | |
| AACTTACGAGGCAATTAGCA+TGG | + | chr6_3:49561060-49561079 | None:intergenic | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | + | chr6_3:49561225-49561244 | None:intergenic | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | + | chr6_3:49561224-49561243 | None:intergenic | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | - | chr6_3:49561224-49561243 | Msa0953340:five_prime_UTR | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | - | chr6_3:49561225-49561244 | Msa0953340:five_prime_UTR | 40.0% | |
| !! | AGGGTTTGAATTTTGGGAGC+GGG | + | chr6_3:49556750-49556769 | None:intergenic | 45.0% |
| GAGATGAAGATTGGAGGCTT+AGG | + | chr6_3:49556770-49556789 | None:intergenic | 45.0% | |
| CTAGTCGTGTTTGACGGAAA+TGG | + | chr6_3:49556942-49556961 | None:intergenic | 45.0% | |
| ! | CTTCTTCGTGATGACGACTA+TGG | - | chr6_3:49557060-49557079 | Msa0953340:three_prime_UTR | 45.0% |
| ! | ACTAAACTCGGTGACTATGG+CGG | - | chr6_3:49557124-49557143 | Msa0953340:intron | 45.0% |
| TGGAGATGAGAACAGAGTTC+AGG | - | chr6_3:49557302-49557321 | Msa0953340:intron | 45.0% | |
| GGAGATGAGAACAGAGTTCA+GGG | - | chr6_3:49557303-49557322 | Msa0953340:intron | 45.0% | |
| !!! | TCGGTTTTGGAGAGTATCGT+TGG | - | chr6_3:49557332-49557351 | Msa0953340:intron | 45.0% |
| GACTTTCTACCTAGAGGATC+AGG | - | chr6_3:49557359-49557378 | Msa0953340:intron | 45.0% | |
| GAAAGAGAACCTGATCCTCT+AGG | + | chr6_3:49557371-49557390 | None:intergenic | 45.0% | |
| !!! | GAGGTTTTGGGTAGTTCAAC+TGG | - | chr6_3:49557660-49557679 | Msa0953340:intron | 45.0% |
| ! | TAGTGGCCTTGGATCCAAAA+TGG | - | chr6_3:49558374-49558393 | Msa0953340:intron | 45.0% |
| AAAGAAGGGCTCTGTGCTAA+TGG | - | chr6_3:49558537-49558556 | Msa0953340:intron | 45.0% | |
| AAGAAGGGCTCTGTGCTAAT+GGG | - | chr6_3:49558538-49558557 | Msa0953340:intron | 45.0% | |
| CATGCATCTAAGCAAGCTGA+AGG | + | chr6_3:49559167-49559186 | None:intergenic | 45.0% | |
| AGTGTCAACTTGCGGACAAA+AGG | - | chr6_3:49559792-49559811 | Msa0953340:intron | 45.0% | |
| AGATATGATGCCTGCTCACA+TGG | - | chr6_3:49560183-49560202 | Msa0953340:intron | 45.0% | |
| TTACCACATACCATGTGAGC+AGG | + | chr6_3:49560196-49560215 | None:intergenic | 45.0% | |
| GCTCACATGGTATGTGGTAA+AGG | - | chr6_3:49560196-49560215 | Msa0953340:intron | 45.0% | |
| GGCTGAAAATGACTAAGTGC+TGG | + | chr6_3:49560451-49560470 | None:intergenic | 45.0% | |
| CATAACTGTGACTGTCTCAC+TGG | - | chr6_3:49560608-49560627 | Msa0953340:intron | 45.0% | |
| GGTGAACCTCAGAAACTAGT+AGG | - | chr6_3:49560786-49560805 | Msa0953340:intron | 45.0% | |
| !!! | TTCTTATTTTATTTTATTTT+TGG | - | chr6_3:49557282-49557301 | Msa0953340:intron | 5.0% |
| !!! | ATTTTTTTAGTAATTTATTT+TGG | - | chr6_3:49557428-49557447 | Msa0953340:intron | 5.0% |
| GGAGAGTGAAATTTGGGAGC+GGG | + | chr6_3:49556728-49556747 | None:intergenic | 50.0% | |
| GGGAGAGTGAAATTTGGGAG+CGG | + | chr6_3:49556729-49556748 | None:intergenic | 50.0% | |
| GAGCGGGGAGAGTGAAATTT+GGG | + | chr6_3:49556734-49556753 | None:intergenic | 50.0% | |
| !! | GGGTTTGAATTTTGGGAGCG+GGG | + | chr6_3:49556749-49556768 | None:intergenic | 50.0% |
| GGACGTGACTTTCTACCTAG+AGG | - | chr6_3:49557353-49557372 | Msa0953340:intron | 50.0% | |
| GCTTGAAAAGCTTGAGGCAG+AGG | - | chr6_3:49557766-49557785 | Msa0953340:intron | 50.0% | |
| ! | TGAAAAATGGGTTCCGCCGT+TGG | - | chr6_3:49558686-49558705 | Msa0953340:intron | 50.0% |
| ! | GAAAAATGGGTTCCGCCGTT+GGG | - | chr6_3:49558687-49558706 | Msa0953340:intron | 50.0% |
| AGAAGTGAGAAACCCAACGG+CGG | + | chr6_3:49558702-49558721 | None:intergenic | 50.0% | |
| GGGAAAGGTTACGAGAGAAC+CGG | - | chr6_3:49558949-49558968 | Msa0953340:CDS | 50.0% | |
| GAACCATCTTTGACAGGCTC+CGG | + | chr6_3:49558971-49558990 | None:intergenic | 50.0% | |
| TTGCATAAGGGTTCGCGAGT+AGG | + | chr6_3:49559055-49559074 | None:intergenic | 50.0% | |
| CCTCAGGGTTGACTATCTTG+TGG | + | chr6_3:49559257-49559276 | None:intergenic | 50.0% | |
| CCACAAGATAGTCAACCCTG+AGG | - | chr6_3:49559254-49559273 | Msa0953340:intron | 50.0% | |
| ATGCCTGCTCACATGGTATG+TGG | - | chr6_3:49560190-49560209 | Msa0953340:intron | 50.0% | |
| TGTGTGTGTGTGTGTGTGTG+TGG | - | chr6_3:49560697-49560716 | Msa0953340:CDS | 50.0% | |
| CTCTAACGAACTACACCCTC+CGG | - | chr6_3:49561090-49561109 | Msa0953340:five_prime_UTR | 50.0% | |
| ! | ATTAGTGACCGGAGGGTGTA+TGG | - | chr6_3:49561232-49561251 | Msa0953340:five_prime_UTR | 50.0% |
| GGAGCGGGGAGAGTGAAATT+TGG | + | chr6_3:49556735-49556754 | None:intergenic | 55.0% | |
| GAACCGGAGCCTGTCAAAGA+TGG | - | chr6_3:49558965-49558984 | Msa0953340:CDS | 55.0% | |
| CTTCCTTCCGTCGCCGTCGT+CGG | - | chr6_3:49557187-49557206 | Msa0953340:intron | 65.0% | |
| CGGTACCTGACCACCGACGA+CGG | + | chr6_3:49557203-49557222 | None:intergenic | 65.0% | |
| CTGACCACCGACGACGGCGA+CGG | + | chr6_3:49557197-49557216 | None:intergenic | 70.0% | |
| CCACCGACGACGGCGACGGA+AGG | + | chr6_3:49557193-49557212 | None:intergenic | 75.0% | |
| CCTTCCGTCGCCGTCGTCGG+TGG | - | chr6_3:49557190-49557209 | Msa0953340:intron | 75.0% | |
| CGTCGCCGTCGTCGGTGGTC+AGG | - | chr6_3:49557195-49557214 | Msa0953340:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 49556725 | 49561327 | 49556725 | ID=Msa0953340;Name=Msa0953340 |
| chr6_3 | mRNA | 49556725 | 49561327 | 49556725 | ID=Msa0953340-mRNA-1;Parent=Msa0953340;Name=Msa0953340-mRNA-1;_AED=0.18;_eAED=0.18;_QI=345|0.66|0.85|1|0|0.28|7|385|155 |
| chr6_3 | exon | 49556725 | 49556806 | 49556725 | ID=Msa0953340-mRNA-1:exon:10837;Parent=Msa0953340-mRNA-1 |
| chr6_3 | exon | 49556956 | 49557120 | 49556956 | ID=Msa0953340-mRNA-1:exon:10836;Parent=Msa0953340-mRNA-1 |
| chr6_3 | exon | 49557211 | 49557290 | 49557211 | ID=Msa0953340-mRNA-1:exon:10835;Parent=Msa0953340-mRNA-1 |
| chr6_3 | exon | 49557469 | 49557565 | 49557469 | ID=Msa0953340-mRNA-1:exon:10834;Parent=Msa0953340-mRNA-1 |
| chr6_3 | exon | 49558926 | 49559138 | 49558926 | ID=Msa0953340-mRNA-1:exon:10833;Parent=Msa0953340-mRNA-1 |
| chr6_3 | exon | 49560672 | 49560740 | 49560672 | ID=Msa0953340-mRNA-1:exon:10832;Parent=Msa0953340-mRNA-1 |
| chr6_3 | exon | 49560836 | 49561327 | 49560836 | ID=Msa0953340-mRNA-1:exon:10831;Parent=Msa0953340-mRNA-1 |
| chr6_3 | five_prime_UTR | 49560983 | 49561327 | 49560983 | ID=Msa0953340-mRNA-1:five_prime_utr;Parent=Msa0953340-mRNA-1 |
| chr6_3 | CDS | 49560836 | 49560982 | 49560836 | ID=Msa0953340-mRNA-1:cds;Parent=Msa0953340-mRNA-1 |
| chr6_3 | CDS | 49560672 | 49560740 | 49560672 | ID=Msa0953340-mRNA-1:cds;Parent=Msa0953340-mRNA-1 |
| chr6_3 | CDS | 49558926 | 49559138 | 49558926 | ID=Msa0953340-mRNA-1:cds;Parent=Msa0953340-mRNA-1 |
| chr6_3 | CDS | 49557527 | 49557565 | 49557527 | ID=Msa0953340-mRNA-1:cds;Parent=Msa0953340-mRNA-1 |
| chr6_3 | three_prime_UTR | 49557469 | 49557526 | 49557469 | ID=Msa0953340-mRNA-1:three_prime_utr;Parent=Msa0953340-mRNA-1 |
| chr6_3 | three_prime_UTR | 49557211 | 49557290 | 49557211 | ID=Msa0953340-mRNA-1:three_prime_utr;Parent=Msa0953340-mRNA-1 |
| chr6_3 | three_prime_UTR | 49556956 | 49557120 | 49556956 | ID=Msa0953340-mRNA-1:three_prime_utr;Parent=Msa0953340-mRNA-1 |
| chr6_3 | three_prime_UTR | 49556725 | 49556806 | 49556725 | ID=Msa0953340-mRNA-1:three_prime_utr;Parent=Msa0953340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
