AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0387050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0387050 MtrunA17_Chr3g0145091 98.529 136 2 0 1 136 1 136 1.02e-93 275
Msa0387050 MtrunA17_Chr4g0035851 90.441 136 13 0 1 136 1 136 9.56e-79 237
Msa0387050 MtrunA17_Chr8g0380121 50.000 138 67 1 1 138 1 136 5.09e-40 137
Msa0387050 MtrunA17_Chr5g0408971 50.725 138 62 3 1 136 1 134 7.23e-36 126
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0387050 AT4G34660.3 83.088 136 20 1 1 136 1 133 2.30e-72 219
Msa0387050 AT4G34660.1 83.088 136 20 1 1 136 1 133 3.75e-72 220
Msa0387050 AT4G34660.2 72.794 136 11 1 1 136 1 110 1.99e-61 192
Msa0387050 AT4G18060.1 48.921 139 70 1 1 138 1 139 3.26e-40 137
Msa0387050 AT1G31440.1 55.882 136 56 2 1 136 1 132 7.09e-40 139

Find 43 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTGAAACAGTTTGGGGCT+GGG 0.217852 3_1:-90876261 Msa0387050:CDS
GTGCTGAAACAGTTTGGGGC+TGG 0.250806 3_1:-90876262 Msa0387050:CDS
TTTGTCTTGTTTCTTTGTTT+TGG 0.281231 3_1:-90877044 Msa0387050:five_prime_UTR
GTAGAAGGTTACATTGTTAC+TGG 0.311388 3_1:-90876013 Msa0387050:CDS
ATATGGAGGTTCGGATAATA+TGG 0.313809 3_1:-90876236 Msa0387050:CDS
AGGCTGTGCTGAAACAGTTT+GGG 0.315561 3_1:-90876267 Msa0387050:CDS
TAGGCTGTGCTGAAACAGTT+TGG 0.335056 3_1:-90876268 Msa0387050:CDS
GGATCAAAGCAAGTTGAAAT+AGG 0.341883 3_1:-90875992 Msa0387050:intron
GCTGAAACAGTTTGGGGCTG+GGG 0.344123 3_1:-90876260 Msa0387050:CDS
TCAGAAGATAGCAGGAAATA+TGG 0.369835 3_1:-90875738 Msa0387050:CDS
AGCGACTTGTTCTCTGAGCT+TGG 0.399794 3_1:+90876879 None:intergenic
GATATTGTCCGTGGAGTAGA+AGG 0.411921 3_1:-90876028 Msa0387050:CDS
TGCACATGCCCGTGCACAAA+TGG 0.428414 3_1:-90875661 Msa0387050:CDS
ACAAGTCGCTCGCCAACAAC+AGG 0.429620 3_1:-90876866 Msa0387050:intron
TTCTTTCTCCATTTGTGCAC+GGG 0.480707 3_1:+90875653 None:intergenic
CCGTGTTGGTGGTGGAGTCT+TGG 0.503254 3_1:-90877009 Msa0387050:five_prime_UTR
GTTCTTTCTCCATTTGTGCA+CGG 0.505811 3_1:+90875652 None:intergenic
TTTCTTTCAGCATTATCAAA+GGG 0.513025 3_1:-90876050 Msa0387050:intron
GACTTGTTCTCTGAGCTTGG+AGG 0.518509 3_1:+90876882 None:intergenic
TTCCATTCAATTCAAAAGAG+AGG 0.527113 3_1:+90876921 None:intergenic
CATATCCACACGTGCAGGAA+AGG 0.533423 3_1:-90876164 Msa0387050:intron
CTGAAACAGTTTGGGGCTGG+GGG 0.538217 3_1:-90876259 Msa0387050:CDS
CAAAGGTGTCAGAAGATAGC+AGG 0.539497 3_1:-90875746 Msa0387050:CDS
GGCTGTGCTGAAACAGTTTG+GGG 0.543764 3_1:-90876266 Msa0387050:CDS
ATTTCTTTCAGCATTATCAA+AGG 0.545451 3_1:-90876051 Msa0387050:intron
GGGAACTTACTAAAAGCTCT+TGG 0.551243 3_1:-90875627 Msa0387050:CDS
CTTTACATATCCACACGTGC+AGG 0.554567 3_1:-90876169 Msa0387050:CDS
ACTAGAAACCGTGTTGGTGG+TGG 0.562391 3_1:-90877017 Msa0387050:five_prime_UTR
AGTAACCTTTCCTGCACGTG+TGG 0.574166 3_1:+90876159 None:intergenic
TCTTGATAACGTGCTACCAC+TGG 0.575621 3_1:+90875698 None:intergenic
ACTAAAAGCTCTTGGCACAC+AGG 0.606319 3_1:-90875619 Msa0387050:intron
ATGTTATTTAATAGGAACAA+AGG 0.619754 3_1:-90875763 Msa0387050:intron
CAAAGAAACAAGACAAACAG+AGG 0.624976 3_1:+90877050 None:intergenic
GCACAAATGGAGAAAGAACG+TGG 0.633748 3_1:-90875648 Msa0387050:CDS
TCAGAAAATACTTGTACCAG+TGG 0.634478 3_1:-90875714 Msa0387050:CDS
CAATGTAACCTTCTACTCCA+CGG 0.635038 3_1:+90876020 None:intergenic
GGTACAACTAGAAACCGTGT+TGG 0.644367 3_1:-90877023 Msa0387050:five_prime_UTR
TATCAAAGGGATATTGTCCG+TGG 0.648998 3_1:-90876037 Msa0387050:CDS
ACAACTAGAAACCGTGTTGG+TGG 0.651132 3_1:-90877020 Msa0387050:five_prime_UTR
CCAAGACTCCACCACCAACA+CGG 0.661774 3_1:+90877009 None:intergenic
GGATAATATGGTTACTGACG+AGG 0.675143 3_1:-90876224 Msa0387050:CDS
AAAGAAACAAGACAAACAGA+GGG 0.676607 3_1:+90877051 None:intergenic
CACAAATGGAGAAAGAACGT+GGG 0.696312 3_1:-90875647 Msa0387050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTATACATGTTATTTAAT+AGG - chr3_1:90876441-90876460 Msa0387050:intron 15.0%
!!! TTCTATACATGTTATTTAAT+AGG - chr3_1:90876441-90876460 Msa0387050:intron 15.0%
!!! TAACTTCATTTTAGAAATGA+GGG + chr3_1:90875802-90875821 None:intergenic 20.0%
!! TTGAAATAGGTTAGTAATAT+TGG - chr3_1:90876233-90876252 Msa0387050:CDS 20.0%
!! ATAAGATATTAGAAATAGAG+AGG + chr3_1:90876355-90876374 None:intergenic 20.0%
!! AATATCTTATATTCATGCAT+TGG - chr3_1:90876365-90876384 Msa0387050:intron 20.0%
!! AAATTCAATGACAATATGAT+AGG + chr3_1:90876417-90876436 None:intergenic 20.0%
!!! ATGTTATTTAATAGGAACAA+AGG - chr3_1:90876449-90876468 Msa0387050:intron 20.0%
!! ATGATAATTTAACATTACAG+TGG + chr3_1:90876730-90876749 None:intergenic 20.0%
!! AATGTTAAATTATCATTGCT+TGG - chr3_1:90876734-90876753 Msa0387050:intron 20.0%
!!! TAACTTCATTTTAGAAATGA+GGG + chr3_1:90875802-90875821 None:intergenic 20.0%
!! TTGAAATAGGTTAGTAATAT+TGG - chr3_1:90876233-90876252 Msa0387050:CDS 20.0%
!! ATAAGATATTAGAAATAGAG+AGG + chr3_1:90876355-90876374 None:intergenic 20.0%
!! AATATCTTATATTCATGCAT+TGG - chr3_1:90876365-90876384 Msa0387050:intron 20.0%
!! AAATTCAATGACAATATGAT+AGG + chr3_1:90876417-90876436 None:intergenic 20.0%
!!! ATGTTATTTAATAGGAACAA+AGG - chr3_1:90876449-90876468 Msa0387050:intron 20.0%
!! ATGATAATTTAACATTACAG+TGG + chr3_1:90876730-90876749 None:intergenic 20.0%
!! AATGTTAAATTATCATTGCT+TGG - chr3_1:90876734-90876753 Msa0387050:intron 20.0%
!!! TTTGTCTTGTTTCTTTGTTT+TGG - chr3_1:90875168-90875187 Msa0387050:intron 25.0%
! ATAAAATCACGAGTACAAAA+AGG + chr3_1:90875433-90875452 None:intergenic 25.0%
! CGATAATACCAATAATAAGT+TGG - chr3_1:90875526-90875545 Msa0387050:intron 25.0%
! CTCAAAATCCAACTTATTAT+TGG + chr3_1:90875537-90875556 None:intergenic 25.0%
! CTTAACAAGTGTTTATATGT+GGG - chr3_1:90875732-90875751 Msa0387050:CDS 25.0%
! TTAACAAGTGTTTATATGTG+GGG - chr3_1:90875733-90875752 Msa0387050:CDS 25.0%
!!! GTAACTTCATTTTAGAAATG+AGG + chr3_1:90875803-90875822 None:intergenic 25.0%
! AGTAAGAAAAAATTGAGAAG+TGG + chr3_1:90875871-90875890 None:intergenic 25.0%
! GTGATTAATTATTAACACCA+CGG + chr3_1:90875911-90875930 None:intergenic 25.0%
! AATCACAATTGTTGTGATTT+AGG - chr3_1:90875925-90875944 Msa0387050:intron 25.0%
! ATTTCTTTCAGCATTATCAA+AGG - chr3_1:90876161-90876180 Msa0387050:intron 25.0%
! TTTCTTTCAGCATTATCAAA+GGG - chr3_1:90876162-90876181 Msa0387050:intron 25.0%
! AATAGGTTAGTAATATTGGT+TGG - chr3_1:90876237-90876256 Msa0387050:CDS 25.0%
! AGTGGAAATCTACATTATTT+CGG + chr3_1:90876705-90876724 None:intergenic 25.0%
! TTAAATTATCATTGCTTGGA+TGG - chr3_1:90876738-90876757 Msa0387050:intron 25.0%
!! NNNNNNNNTAAGCTTTGGTG+TGG - chr3_1:90876930-90876949 Msa0387050:five_prime_UTR 25.0%
!!! TTTGTCTTGTTTCTTTGTTT+TGG - chr3_1:90875168-90875187 Msa0387050:intron 25.0%
! ATAAAATCACGAGTACAAAA+AGG + chr3_1:90875433-90875452 None:intergenic 25.0%
! CGATAATACCAATAATAAGT+TGG - chr3_1:90875526-90875545 Msa0387050:intron 25.0%
! CTCAAAATCCAACTTATTAT+TGG + chr3_1:90875537-90875556 None:intergenic 25.0%
! CTTAACAAGTGTTTATATGT+GGG - chr3_1:90875732-90875751 Msa0387050:CDS 25.0%
! TTAACAAGTGTTTATATGTG+GGG - chr3_1:90875733-90875752 Msa0387050:CDS 25.0%
!!! GTAACTTCATTTTAGAAATG+AGG + chr3_1:90875803-90875822 None:intergenic 25.0%
! AGTAAGAAAAAATTGAGAAG+TGG + chr3_1:90875871-90875890 None:intergenic 25.0%
! GTGATTAATTATTAACACCA+CGG + chr3_1:90875911-90875930 None:intergenic 25.0%
! AATCACAATTGTTGTGATTT+AGG - chr3_1:90875925-90875944 Msa0387050:intron 25.0%
! ATTTCTTTCAGCATTATCAA+AGG - chr3_1:90876161-90876180 Msa0387050:intron 25.0%
! TTTCTTTCAGCATTATCAAA+GGG - chr3_1:90876162-90876181 Msa0387050:intron 25.0%
! AATAGGTTAGTAATATTGGT+TGG - chr3_1:90876237-90876256 Msa0387050:CDS 25.0%
! AGTGGAAATCTACATTATTT+CGG + chr3_1:90876705-90876724 None:intergenic 25.0%
! TTAAATTATCATTGCTTGGA+TGG - chr3_1:90876738-90876757 Msa0387050:intron 25.0%
!! NNNNNNNNTAAGCTTTGGTG+TGG - chr3_1:90876930-90876949 Msa0387050:five_prime_UTR 25.0%
AAAGAAACAAGACAAACAGA+GGG + chr3_1:90875164-90875183 None:intergenic 30.0%
! TTCCTCTCTTTTGAATTGAA+TGG - chr3_1:90875289-90875308 Msa0387050:intron 30.0%
TTCCATTCAATTCAAAAGAG+AGG + chr3_1:90875294-90875313 None:intergenic 30.0%
AATCGAATTGAAAGCGAAAT+AGG + chr3_1:90875402-90875421 None:intergenic 30.0%
ATTGTTTCATAACAGCAACA+AGG + chr3_1:90875458-90875477 None:intergenic 30.0%
ATTGGTATTATCGACGATTT+AGG + chr3_1:90875519-90875538 None:intergenic 30.0%
!! TATGTTTTGGATACTAAAGC+AGG + chr3_1:90875634-90875653 None:intergenic 30.0%
! TGTTGGATGAATCTATGTTT+TGG + chr3_1:90875647-90875666 None:intergenic 30.0%
AACATAGATTCATCCAACAA+AGG - chr3_1:90875648-90875667 Msa0387050:CDS 30.0%
TCTTTGTATTAAGCCTTTGT+TGG + chr3_1:90875664-90875683 None:intergenic 30.0%
! CCACATATAAACACTTGTTA+AGG + chr3_1:90875734-90875753 None:intergenic 30.0%
CCTTAACAAGTGTTTATATG+TGG - chr3_1:90875731-90875750 Msa0387050:CDS 30.0%
TAACAAGTGTTTATATGTGG+GGG - chr3_1:90875734-90875753 Msa0387050:CDS 30.0%
CATTATCAGTAATGAAGGAA+GGG + chr3_1:90876131-90876150 None:intergenic 30.0%
TCATTATCAGTAATGAAGGA+AGG + chr3_1:90876132-90876151 None:intergenic 30.0%
CATGTCATTATCAGTAATGA+AGG + chr3_1:90876136-90876155 None:intergenic 30.0%
AATGACAATATGATAGGAAC+TGG + chr3_1:90876411-90876430 None:intergenic 30.0%
!! GTAAGTATTGATGTCAAACT+TGG + chr3_1:90876673-90876692 None:intergenic 30.0%
CTTGTGATTATAATCTAGCA+TGG + chr3_1:90876816-90876835 None:intergenic 30.0%
ACCTACATCAACTAAATGTT+GGG + chr3_1:90877036-90877055 None:intergenic 30.0%
AACCTACATCAACTAAATGT+TGG + chr3_1:90877037-90877056 None:intergenic 30.0%
! TGTAGGTTTTTCATATTTGC+AGG - chr3_1:90877049-90877068 Msa0387050:five_prime_UTR 30.0%
AAAGAAACAAGACAAACAGA+GGG + chr3_1:90875164-90875183 None:intergenic 30.0%
! TTCCTCTCTTTTGAATTGAA+TGG - chr3_1:90875289-90875308 Msa0387050:intron 30.0%
TTCCATTCAATTCAAAAGAG+AGG + chr3_1:90875294-90875313 None:intergenic 30.0%
AATCGAATTGAAAGCGAAAT+AGG + chr3_1:90875402-90875421 None:intergenic 30.0%
ATTGTTTCATAACAGCAACA+AGG + chr3_1:90875458-90875477 None:intergenic 30.0%
ATTGGTATTATCGACGATTT+AGG + chr3_1:90875519-90875538 None:intergenic 30.0%
!! TATGTTTTGGATACTAAAGC+AGG + chr3_1:90875634-90875653 None:intergenic 30.0%
! TGTTGGATGAATCTATGTTT+TGG + chr3_1:90875647-90875666 None:intergenic 30.0%
AACATAGATTCATCCAACAA+AGG - chr3_1:90875648-90875667 Msa0387050:CDS 30.0%
TCTTTGTATTAAGCCTTTGT+TGG + chr3_1:90875664-90875683 None:intergenic 30.0%
! CCACATATAAACACTTGTTA+AGG + chr3_1:90875734-90875753 None:intergenic 30.0%
CCTTAACAAGTGTTTATATG+TGG - chr3_1:90875731-90875750 Msa0387050:CDS 30.0%
TAACAAGTGTTTATATGTGG+GGG - chr3_1:90875734-90875753 Msa0387050:CDS 30.0%
CATTATCAGTAATGAAGGAA+GGG + chr3_1:90876131-90876150 None:intergenic 30.0%
TCATTATCAGTAATGAAGGA+AGG + chr3_1:90876132-90876151 None:intergenic 30.0%
CATGTCATTATCAGTAATGA+AGG + chr3_1:90876136-90876155 None:intergenic 30.0%
AATGACAATATGATAGGAAC+TGG + chr3_1:90876411-90876430 None:intergenic 30.0%
!! GTAAGTATTGATGTCAAACT+TGG + chr3_1:90876673-90876692 None:intergenic 30.0%
CTTGTGATTATAATCTAGCA+TGG + chr3_1:90876816-90876835 None:intergenic 30.0%
ACCTACATCAACTAAATGTT+GGG + chr3_1:90877036-90877055 None:intergenic 30.0%
AACCTACATCAACTAAATGT+TGG + chr3_1:90877037-90877056 None:intergenic 30.0%
! TGTAGGTTTTTCATATTTGC+AGG - chr3_1:90877049-90877068 Msa0387050:five_prime_UTR 30.0%
CAAAGAAACAAGACAAACAG+AGG + chr3_1:90875165-90875184 None:intergenic 35.0%
TTCAAACTCGACTAGTAGAT+TGG - chr3_1:90875561-90875580 Msa0387050:intron 35.0%
ACTAAAGCAGGTCATATACA+AGG + chr3_1:90875622-90875641 None:intergenic 35.0%
AATTATTAACACCACGGTAG+AGG + chr3_1:90875905-90875924 None:intergenic 35.0%
ATATGGAGGTTCGGATAATA+TGG - chr3_1:90875976-90875995 Msa0387050:intron 35.0%
ACACAGCAAAATTAGAGGAT+TGG + chr3_1:90876092-90876111 None:intergenic 35.0%
GAGAAACACAGCAAAATTAG+AGG + chr3_1:90876097-90876116 None:intergenic 35.0%
GTAGAAGGTTACATTGTTAC+TGG - chr3_1:90876199-90876218 Msa0387050:CDS 35.0%
! GGATCAAAGCAAGTTGAAAT+AGG - chr3_1:90876220-90876239 Msa0387050:CDS 35.0%
TCAGAAGATAGCAGGAAATA+TGG - chr3_1:90876474-90876493 Msa0387050:intron 35.0%
TCAGAAAATACTTGTACCAG+TGG - chr3_1:90876498-90876517 Msa0387050:intron 35.0%
ACACACATCATAGGGTTATT+TGG - chr3_1:90876647-90876666 Msa0387050:intron 35.0%
TTTAACATTACAGTGGTCAG+TGG + chr3_1:90876723-90876742 None:intergenic 35.0%
!! TTATGTTCCTCTTTAGCTTG+TGG - chr3_1:90876768-90876787 Msa0387050:intron 35.0%
AAATAAGCCACAAGCTAAAG+AGG + chr3_1:90876778-90876797 None:intergenic 35.0%
GCTATTTGTCATATTGTGTG+TGG - chr3_1:90876975-90876994 Msa0387050:five_prime_UTR 35.0%
CAAAGAAACAAGACAAACAG+AGG + chr3_1:90875165-90875184 None:intergenic 35.0%
TTCAAACTCGACTAGTAGAT+TGG - chr3_1:90875561-90875580 Msa0387050:intron 35.0%
ACTAAAGCAGGTCATATACA+AGG + chr3_1:90875622-90875641 None:intergenic 35.0%
AATTATTAACACCACGGTAG+AGG + chr3_1:90875905-90875924 None:intergenic 35.0%
ATATGGAGGTTCGGATAATA+TGG - chr3_1:90875976-90875995 Msa0387050:intron 35.0%
ACACAGCAAAATTAGAGGAT+TGG + chr3_1:90876092-90876111 None:intergenic 35.0%
GAGAAACACAGCAAAATTAG+AGG + chr3_1:90876097-90876116 None:intergenic 35.0%
GTAGAAGGTTACATTGTTAC+TGG - chr3_1:90876199-90876218 Msa0387050:CDS 35.0%
! GGATCAAAGCAAGTTGAAAT+AGG - chr3_1:90876220-90876239 Msa0387050:CDS 35.0%
TCAGAAGATAGCAGGAAATA+TGG - chr3_1:90876474-90876493 Msa0387050:intron 35.0%
TCAGAAAATACTTGTACCAG+TGG - chr3_1:90876498-90876517 Msa0387050:intron 35.0%
ACACACATCATAGGGTTATT+TGG - chr3_1:90876647-90876666 Msa0387050:intron 35.0%
TTTAACATTACAGTGGTCAG+TGG + chr3_1:90876723-90876742 None:intergenic 35.0%
!! TTATGTTCCTCTTTAGCTTG+TGG - chr3_1:90876768-90876787 Msa0387050:intron 35.0%
AAATAAGCCACAAGCTAAAG+AGG + chr3_1:90876778-90876797 None:intergenic 35.0%
GCTATTTGTCATATTGTGTG+TGG - chr3_1:90876975-90876994 Msa0387050:five_prime_UTR 35.0%
!!! AGGTTTTGTTGAGAGAGAGA+GGG + chr3_1:90875382-90875401 None:intergenic 40.0%
!!! TAGGTTTTGTTGAGAGAGAG+AGG + chr3_1:90875383-90875402 None:intergenic 40.0%
GACTATCATCCAATATGGGA+CGG + chr3_1:90875709-90875728 None:intergenic 40.0%
GGACGACTATCATCCAATAT+GGG + chr3_1:90875713-90875732 None:intergenic 40.0%
AGGACGACTATCATCCAATA+TGG + chr3_1:90875714-90875733 None:intergenic 40.0%
ATAACTCAACCCCACATAAC+CGG + chr3_1:90875778-90875797 None:intergenic 40.0%
GGATAATATGGTTACTGACG+AGG - chr3_1:90875988-90876007 Msa0387050:intron 40.0%
! CAGTAATGAAGGAAGGGTAT+AGG + chr3_1:90876125-90876144 None:intergenic 40.0%
TATCAAAGGGATATTGTCCG+TGG - chr3_1:90876175-90876194 Msa0387050:CDS 40.0%
CAATGTAACCTTCTACTCCA+CGG + chr3_1:90876195-90876214 None:intergenic 40.0%
!! AGGAACTGGTATTGATACTG+CGG + chr3_1:90876397-90876416 None:intergenic 40.0%
TTCTTTCTCCATTTGTGCAC+GGG + chr3_1:90876562-90876581 None:intergenic 40.0%
GTTCTTTCTCCATTTGTGCA+CGG + chr3_1:90876563-90876582 None:intergenic 40.0%
CACAAATGGAGAAAGAACGT+GGG - chr3_1:90876565-90876584 Msa0387050:intron 40.0%
GGGAACTTACTAAAAGCTCT+TGG - chr3_1:90876585-90876604 Msa0387050:intron 40.0%
TAATCTAGCATGGTGAAGCT+TGG + chr3_1:90876806-90876825 None:intergenic 40.0%
! GCCCAACATTTAGTTGATGT+AGG - chr3_1:90877032-90877051 Msa0387050:five_prime_UTR 40.0%
!!! AGGTTTTGTTGAGAGAGAGA+GGG + chr3_1:90875382-90875401 None:intergenic 40.0%
!!! TAGGTTTTGTTGAGAGAGAG+AGG + chr3_1:90875383-90875402 None:intergenic 40.0%
GACTATCATCCAATATGGGA+CGG + chr3_1:90875709-90875728 None:intergenic 40.0%
GGACGACTATCATCCAATAT+GGG + chr3_1:90875713-90875732 None:intergenic 40.0%
AGGACGACTATCATCCAATA+TGG + chr3_1:90875714-90875733 None:intergenic 40.0%
ATAACTCAACCCCACATAAC+CGG + chr3_1:90875778-90875797 None:intergenic 40.0%
GGATAATATGGTTACTGACG+AGG - chr3_1:90875988-90876007 Msa0387050:intron 40.0%
! CAGTAATGAAGGAAGGGTAT+AGG + chr3_1:90876125-90876144 None:intergenic 40.0%
TATCAAAGGGATATTGTCCG+TGG - chr3_1:90876175-90876194 Msa0387050:CDS 40.0%
CAATGTAACCTTCTACTCCA+CGG + chr3_1:90876195-90876214 None:intergenic 40.0%
!! AGGAACTGGTATTGATACTG+CGG + chr3_1:90876397-90876416 None:intergenic 40.0%
TTCTTTCTCCATTTGTGCAC+GGG + chr3_1:90876562-90876581 None:intergenic 40.0%
GTTCTTTCTCCATTTGTGCA+CGG + chr3_1:90876563-90876582 None:intergenic 40.0%
CACAAATGGAGAAAGAACGT+GGG - chr3_1:90876565-90876584 Msa0387050:intron 40.0%
GGGAACTTACTAAAAGCTCT+TGG - chr3_1:90876585-90876604 Msa0387050:intron 40.0%
TAATCTAGCATGGTGAAGCT+TGG + chr3_1:90876806-90876825 None:intergenic 40.0%
! GCCCAACATTTAGTTGATGT+AGG - chr3_1:90877032-90877051 Msa0387050:five_prime_UTR 40.0%
GGTACAACTAGAAACCGTGT+TGG - chr3_1:90875189-90875208 Msa0387050:intron 45.0%
ACAACTAGAAACCGTGTTGG+TGG - chr3_1:90875192-90875211 Msa0387050:intron 45.0%
!! CTTGGAGGCTTGTTTTCTGA+TGG + chr3_1:90875318-90875337 None:intergenic 45.0%
! TTTTGTTGAGAGAGAGAGGG+GGG + chr3_1:90875379-90875398 None:intergenic 45.0%
!! GTTTTGTTGAGAGAGAGAGG+GGG + chr3_1:90875380-90875399 None:intergenic 45.0%
!!! GGTTTTGTTGAGAGAGAGAG+GGG + chr3_1:90875381-90875400 None:intergenic 45.0%
! TTTACTAGCTTCCTCTACCG+TGG - chr3_1:90875891-90875910 Msa0387050:intron 45.0%
TAGGCTGTGCTGAAACAGTT+TGG - chr3_1:90875944-90875963 Msa0387050:intron 45.0%
AGGCTGTGCTGAAACAGTTT+GGG - chr3_1:90875945-90875964 Msa0387050:intron 45.0%
CTTTACATATCCACACGTGC+AGG - chr3_1:90876043-90876062 Msa0387050:CDS 45.0%
GATATTGTCCGTGGAGTAGA+AGG - chr3_1:90876184-90876203 Msa0387050:CDS 45.0%
CTTAGTACACGATGAACCTC+TGG - chr3_1:90876301-90876320 Msa0387050:intron 45.0%
!! CAAAGGTGTCAGAAGATAGC+AGG - chr3_1:90876466-90876485 Msa0387050:intron 45.0%
!! TCTTGATAACGTGCTACCAC+TGG + chr3_1:90876517-90876536 None:intergenic 45.0%
GCACAAATGGAGAAAGAACG+TGG - chr3_1:90876564-90876583 Msa0387050:intron 45.0%
ACTAAAAGCTCTTGGCACAC+AGG - chr3_1:90876593-90876612 Msa0387050:intron 45.0%
GGTACAACTAGAAACCGTGT+TGG - chr3_1:90875189-90875208 Msa0387050:intron 45.0%
ACAACTAGAAACCGTGTTGG+TGG - chr3_1:90875192-90875211 Msa0387050:intron 45.0%
!! CTTGGAGGCTTGTTTTCTGA+TGG + chr3_1:90875318-90875337 None:intergenic 45.0%
! TTTTGTTGAGAGAGAGAGGG+GGG + chr3_1:90875379-90875398 None:intergenic 45.0%
!! GTTTTGTTGAGAGAGAGAGG+GGG + chr3_1:90875380-90875399 None:intergenic 45.0%
!!! GGTTTTGTTGAGAGAGAGAG+GGG + chr3_1:90875381-90875400 None:intergenic 45.0%
! TTTACTAGCTTCCTCTACCG+TGG - chr3_1:90875891-90875910 Msa0387050:intron 45.0%
TAGGCTGTGCTGAAACAGTT+TGG - chr3_1:90875944-90875963 Msa0387050:intron 45.0%
AGGCTGTGCTGAAACAGTTT+GGG - chr3_1:90875945-90875964 Msa0387050:intron 45.0%
CTTTACATATCCACACGTGC+AGG - chr3_1:90876043-90876062 Msa0387050:CDS 45.0%
GATATTGTCCGTGGAGTAGA+AGG - chr3_1:90876184-90876203 Msa0387050:CDS 45.0%
CTTAGTACACGATGAACCTC+TGG - chr3_1:90876301-90876320 Msa0387050:intron 45.0%
!! CAAAGGTGTCAGAAGATAGC+AGG - chr3_1:90876466-90876485 Msa0387050:intron 45.0%
!! TCTTGATAACGTGCTACCAC+TGG + chr3_1:90876517-90876536 None:intergenic 45.0%
GCACAAATGGAGAAAGAACG+TGG - chr3_1:90876564-90876583 Msa0387050:intron 45.0%
ACTAAAAGCTCTTGGCACAC+AGG - chr3_1:90876593-90876612 Msa0387050:intron 45.0%
! ACTAGAAACCGTGTTGGTGG+TGG - chr3_1:90875195-90875214 Msa0387050:intron 50.0%
! GACTTGTTCTCTGAGCTTGG+AGG + chr3_1:90875333-90875352 None:intergenic 50.0%
! AGCGACTTGTTCTCTGAGCT+TGG + chr3_1:90875336-90875355 None:intergenic 50.0%
TGTCCTAAGCCGTCCCATAT+TGG - chr3_1:90875697-90875716 Msa0387050:CDS 50.0%
CATCCAATATGGGACGGCTT+AGG + chr3_1:90875703-90875722 None:intergenic 50.0%
! ACCTCACATGCCGGTTATGT+GGG - chr3_1:90875765-90875784 Msa0387050:intron 50.0%
GGCTGTGCTGAAACAGTTTG+GGG - chr3_1:90875946-90875965 Msa0387050:intron 50.0%
! TGCTGAAACAGTTTGGGGCT+GGG - chr3_1:90875951-90875970 Msa0387050:intron 50.0%
CATATCCACACGTGCAGGAA+AGG - chr3_1:90876048-90876067 Msa0387050:intron 50.0%
AGTAACCTTTCCTGCACGTG+TGG + chr3_1:90876056-90876075 None:intergenic 50.0%
GATGAACCTCTGGCAAGCTA+GGG - chr3_1:90876311-90876330 Msa0387050:intron 50.0%
GTGTGCGCGCGCATATATTT+GGG + chr3_1:90876627-90876646 None:intergenic 50.0%
TGTGTGCGCGCGCATATATT+TGG + chr3_1:90876628-90876647 None:intergenic 50.0%
GCGCACACACACACATCATA+GGG - chr3_1:90876639-90876658 Msa0387050:intron 50.0%
! ACTAGAAACCGTGTTGGTGG+TGG - chr3_1:90875195-90875214 Msa0387050:intron 50.0%
! GACTTGTTCTCTGAGCTTGG+AGG + chr3_1:90875333-90875352 None:intergenic 50.0%
! AGCGACTTGTTCTCTGAGCT+TGG + chr3_1:90875336-90875355 None:intergenic 50.0%
TGTCCTAAGCCGTCCCATAT+TGG - chr3_1:90875697-90875716 Msa0387050:CDS 50.0%
CATCCAATATGGGACGGCTT+AGG + chr3_1:90875703-90875722 None:intergenic 50.0%
! ACCTCACATGCCGGTTATGT+GGG - chr3_1:90875765-90875784 Msa0387050:intron 50.0%
GGCTGTGCTGAAACAGTTTG+GGG - chr3_1:90875946-90875965 Msa0387050:intron 50.0%
! TGCTGAAACAGTTTGGGGCT+GGG - chr3_1:90875951-90875970 Msa0387050:intron 50.0%
CATATCCACACGTGCAGGAA+AGG - chr3_1:90876048-90876067 Msa0387050:intron 50.0%
AGTAACCTTTCCTGCACGTG+TGG + chr3_1:90876056-90876075 None:intergenic 50.0%
GATGAACCTCTGGCAAGCTA+GGG - chr3_1:90876311-90876330 Msa0387050:intron 50.0%
GTGTGCGCGCGCATATATTT+GGG + chr3_1:90876627-90876646 None:intergenic 50.0%
TGTGTGCGCGCGCATATATT+TGG + chr3_1:90876628-90876647 None:intergenic 50.0%
GCGCACACACACACATCATA+GGG - chr3_1:90876639-90876658 Msa0387050:intron 50.0%
CCAAGACTCCACCACCAACA+CGG + chr3_1:90875206-90875225 None:intergenic 55.0%
ACAAGTCGCTCGCCAACAAC+AGG - chr3_1:90875346-90875365 Msa0387050:intron 55.0%
TTGAGAGAGAGAGGGGGGAA+GGG + chr3_1:90875374-90875393 None:intergenic 55.0%
CATAACCGGCATGTGAGGTG+AGG + chr3_1:90875764-90875783 None:intergenic 55.0%
! CACCTCACATGCCGGTTATG+TGG - chr3_1:90875764-90875783 Msa0387050:intron 55.0%
! CCTCACATGCCGGTTATGTG+GGG - chr3_1:90875766-90875785 Msa0387050:intron 55.0%
! GTGCTGAAACAGTTTGGGGC+TGG - chr3_1:90875950-90875969 Msa0387050:intron 55.0%
! GCTGAAACAGTTTGGGGCTG+GGG - chr3_1:90875952-90875971 Msa0387050:intron 55.0%
! CTGAAACAGTTTGGGGCTGG+GGG - chr3_1:90875953-90875972 Msa0387050:intron 55.0%
CGATGAACCTCTGGCAAGCT+AGG - chr3_1:90876310-90876329 Msa0387050:intron 55.0%
! TACACTCCCTAGCTTGCCAG+AGG + chr3_1:90876320-90876339 None:intergenic 55.0%
TGCACATGCCCGTGCACAAA+TGG - chr3_1:90876551-90876570 Msa0387050:intron 55.0%
CGCGCACACACACACATCAT+AGG - chr3_1:90876638-90876657 Msa0387050:intron 55.0%
CCAAGACTCCACCACCAACA+CGG + chr3_1:90875206-90875225 None:intergenic 55.0%
ACAAGTCGCTCGCCAACAAC+AGG - chr3_1:90875346-90875365 Msa0387050:intron 55.0%
TTGAGAGAGAGAGGGGGGAA+GGG + chr3_1:90875374-90875393 None:intergenic 55.0%
CATAACCGGCATGTGAGGTG+AGG + chr3_1:90875764-90875783 None:intergenic 55.0%
! CACCTCACATGCCGGTTATG+TGG - chr3_1:90875764-90875783 Msa0387050:intron 55.0%
! CCTCACATGCCGGTTATGTG+GGG - chr3_1:90875766-90875785 Msa0387050:intron 55.0%
! GTGCTGAAACAGTTTGGGGC+TGG - chr3_1:90875950-90875969 Msa0387050:intron 55.0%
! GCTGAAACAGTTTGGGGCTG+GGG - chr3_1:90875952-90875971 Msa0387050:intron 55.0%
! CTGAAACAGTTTGGGGCTGG+GGG - chr3_1:90875953-90875972 Msa0387050:intron 55.0%
CGATGAACCTCTGGCAAGCT+AGG - chr3_1:90876310-90876329 Msa0387050:intron 55.0%
! TACACTCCCTAGCTTGCCAG+AGG + chr3_1:90876320-90876339 None:intergenic 55.0%
TGCACATGCCCGTGCACAAA+TGG - chr3_1:90876551-90876570 Msa0387050:intron 55.0%
CGCGCACACACACACATCAT+AGG - chr3_1:90876638-90876657 Msa0387050:intron 55.0%
!! CCGTGTTGGTGGTGGAGTCT+TGG - chr3_1:90875203-90875222 Msa0387050:intron 60.0%
GGGGGAAGGGAACCTGTTGT+TGG + chr3_1:90875361-90875380 None:intergenic 60.0%
GTTGAGAGAGAGAGGGGGGA+AGG + chr3_1:90875375-90875394 None:intergenic 60.0%
GCAGTCCTCACCTCACATGC+CGG - chr3_1:90875756-90875775 Msa0387050:intron 60.0%
CCCCACATAACCGGCATGTG+AGG + chr3_1:90875769-90875788 None:intergenic 60.0%
! CAGTTTGGGGCTGGGGGATA+TGG - chr3_1:90875959-90875978 Msa0387050:intron 60.0%
! TTTGGGGCTGGGGGATATGG+AGG - chr3_1:90875962-90875981 Msa0387050:intron 60.0%
GGCTGGGGGATATGGAGGTT+CGG - chr3_1:90875967-90875986 Msa0387050:intron 60.0%
!! CCGTGTTGGTGGTGGAGTCT+TGG - chr3_1:90875203-90875222 Msa0387050:intron 60.0%
GGGGGAAGGGAACCTGTTGT+TGG + chr3_1:90875361-90875380 None:intergenic 60.0%
GTTGAGAGAGAGAGGGGGGA+AGG + chr3_1:90875375-90875394 None:intergenic 60.0%
GCAGTCCTCACCTCACATGC+CGG - chr3_1:90875756-90875775 Msa0387050:intron 60.0%
CCCCACATAACCGGCATGTG+AGG + chr3_1:90875769-90875788 None:intergenic 60.0%
! CAGTTTGGGGCTGGGGGATA+TGG - chr3_1:90875959-90875978 Msa0387050:intron 60.0%
! TTTGGGGCTGGGGGATATGG+AGG - chr3_1:90875962-90875981 Msa0387050:intron 60.0%
GGCTGGGGGATATGGAGGTT+CGG - chr3_1:90875967-90875986 Msa0387050:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 90875149 90877085 90875149 ID=Msa0387050;Name=Msa0387050
chr3_1 mRNA 90875149 90877085 90875149 ID=Msa0387050-mRNA-1;Parent=Msa0387050;Name=Msa0387050-mRNA-1;_AED=0.01;_eAED=0.01;_QI=159|0.75|0.6|0.8|1|1|5|0|139
chr3_1 exon 90875149 90875163 90875149 ID=Msa0387050-mRNA-1:exon:25199;Parent=Msa0387050-mRNA-1
chr3_1 exon 90875620 90875771 90875620 ID=Msa0387050-mRNA-1:exon:25198;Parent=Msa0387050-mRNA-1
chr3_1 exon 90875993 90876062 90875993 ID=Msa0387050-mRNA-1:exon:25197;Parent=Msa0387050-mRNA-1
chr3_1 exon 90876165 90876287 90876165 ID=Msa0387050-mRNA-1:exon:25196;Parent=Msa0387050-mRNA-1
chr3_1 exon 90876867 90877085 90876867 ID=Msa0387050-mRNA-1:exon:25195;Parent=Msa0387050-mRNA-1
chr3_1 five_prime_UTR 90876927 90877085 90876927 ID=Msa0387050-mRNA-1:five_prime_utr;Parent=Msa0387050-mRNA-1
chr3_1 CDS 90876867 90876926 90876867 ID=Msa0387050-mRNA-1:cds;Parent=Msa0387050-mRNA-1
chr3_1 CDS 90876165 90876287 90876165 ID=Msa0387050-mRNA-1:cds;Parent=Msa0387050-mRNA-1
chr3_1 CDS 90875993 90876062 90875993 ID=Msa0387050-mRNA-1:cds;Parent=Msa0387050-mRNA-1
chr3_1 CDS 90875620 90875771 90875620 ID=Msa0387050-mRNA-1:cds;Parent=Msa0387050-mRNA-1
chr3_1 CDS 90875149 90875163 90875149 ID=Msa0387050-mRNA-1:cds;Parent=Msa0387050-mRNA-1
Gene Sequence

>Msa0387050

ATGGAAGCCATCAGAAAACAAGCCTCCAAGCTCAGAGAACAAGTCGCTCGCCAACAACAGGCTGTGCTGAAACAGTTTGGGGCTGGGGGATATGGAGGTTCGGATAATATGGTTACTGACGAGGCAGAGCTTCAACAGCATCAGAAACTTGAGAAGCTTTACATATCCACACGTGCAGGAAAGCATTATCAAAGGGATATTGTCCGTGGAGTAGAAGGTTACATTGTTACTGGATCAAAGCAAGTTGAAATAGGAACAAAGGTGTCAGAAGATAGCAGGAAATATGGTTCAGAAAATACTTGTACCAGTGGTAGCACGTTATCAAGAGCTGCGCTAAATTATGCACATGCCCGTGCACAAATGGAGAAAGAACGTGGGAACTTACTAAAAGCTCTTGGCACACAGGTGTTCAATATTTAG

Protein sequence

>Msa0387050

MEAIRKQASKLREQVARQQQAVLKQFGAGGYGGSDNMVTDEAELQQHQKLEKLYISTRAGKHYQRDIVRGVEGYIVTGSKQVEIGTKVSEDSRKYGSENTCTSGSTLSRAALNYAHARAQMEKERGNLLKALGTQVFNI*