AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0958360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0958360 MtrunA17_Chr6g0470231 60.326 184 23 3 1 135 87 269 3.51e-60 186
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0958360 AT5G52840.2 72.642 106 28 1 1 106 1 105 6.80e-46 145
Msa0958360 AT5G52840.1 73.077 104 27 1 1 104 1 103 1.24e-44 144

Find 30 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGATTCAACAGTCTTTC+AGG 0.170090 6_3:+72280409 Msa0958360:three_prime_UTR
ATTTAGTTTGATGAAATAAA+AGG 0.246089 6_3:-72280369 None:intergenic
TTACGATACCCTTTGTCTTC+TGG 0.257585 6_3:-72278428 None:intergenic
TCAACCAGTTCAAGTTGTTT+TGG 0.282704 6_3:-72280447 None:intergenic
CTTTACGCGTCTTGGACTTA+AGG 0.317074 6_3:+72278466 Msa0958360:CDS
TGCTCCAAAACAACTTGAAC+TGG 0.351627 6_3:+72280443 Msa0958360:three_prime_UTR
ATTAACACTTCTCTTGCGTT+TGG 0.354432 6_3:-72278365 None:intergenic
TTAACACTTCTCTTGCGTTT+GGG 0.383857 6_3:-72278364 None:intergenic
TTTGTCAAGAAGAAGAATAT+TGG 0.391623 6_3:+72278489 Msa0958360:CDS
TCTAATATAGCTGACGTTCA+TGG 0.401029 6_3:-72280316 None:intergenic
TATTGAGAATCGTCTTGGTT+GGG 0.401668 6_3:+72278517 Msa0958360:CDS
GTTGAAAGCTTTACGCGTCT+TGG 0.426516 6_3:+72278458 Msa0958360:CDS
GACACTAGACGAGATCAAAA+AGG 0.435244 6_3:+72278403 Msa0958360:CDS
AAACTTATTTGCCTTATGAA+TGG 0.436503 6_3:+72278581 Msa0958360:CDS
GAATCGTCTTGGTTGGGGTC+AGG 0.444696 6_3:+72278523 Msa0958360:CDS
CGTCTAGTGTCTTACTATAG+AGG 0.468796 6_3:-72278391 None:intergenic
TCAATGGCCGCGCCGTCGCT+CGG 0.471122 6_3:-72278295 None:intergenic
TCAGATTCAACAGTCTTTCA+GGG 0.476603 6_3:+72280410 Msa0958360:three_prime_UTR
ACAAGAAAAGATGGTGCTGC+TGG 0.493227 6_3:+72280268 Msa0958360:CDS
AAAGGAAAACCACATTCAAA+AGG 0.501827 6_3:-72280351 None:intergenic
ATTGAGAATCGTCTTGGTTG+GGG 0.506457 6_3:+72278518 Msa0958360:CDS
ATGAATATTGAGAATCGTCT+TGG 0.525507 6_3:+72278512 Msa0958360:CDS
ATATTGAGAATCGTCTTGGT+TGG 0.528056 6_3:+72278516 Msa0958360:CDS
AAAAGGTTCCAGAAGACAAA+GGG 0.534276 6_3:+72278420 Msa0958360:CDS
AAAACAACAACAGGAATCGT+AGG 0.600187 6_3:+72278329 Msa0958360:CDS
GTAATATACAGGTTTGTCGA+TGG 0.603158 6_3:+72280219 Msa0958360:intron
GTGGCTGAAACAAGAAAAGA+TGG 0.607028 6_3:+72280259 Msa0958360:CDS
GGCAAAGATAGAAGAACTTG+TGG 0.623499 6_3:+72280240 Msa0958360:CDS
GAAGATGTTTCTCCGAGCGA+CGG 0.629217 6_3:+72278283 Msa0958360:exon
TGTTTCTCCGAGCGACGGCG+CGG 0.688196 6_3:+72278288 Msa0958360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTATTTAATCATATGAT+AGG - chr6_3:72278792-72278811 None:intergenic 15.0%
!!! ATTTAGTTTGATGAAATAAA+AGG - chr6_3:72280372-72280391 None:intergenic 15.0%
!!! TTGTTATTTAATCATATGAT+AGG - chr6_3:72278792-72278811 None:intergenic 15.0%
!!! ATTTAGTTTGATGAAATAAA+AGG - chr6_3:72280372-72280391 None:intergenic 15.0%
!! CAAAAAAAATACCATTCATA+AGG - chr6_3:72278595-72278614 None:intergenic 20.0%
!! TTAAGTAGATTATTAGTAAG+TGG + chr6_3:72278766-72278785 Msa0958360:intron 20.0%
!! TCATATGATTAAATAACAAG+AGG + chr6_3:72278793-72278812 Msa0958360:intron 20.0%
!! TTCTAGTATTTAACTCTAAT+GGG - chr6_3:72278820-72278839 None:intergenic 20.0%
!! ATTCTAGTATTTAACTCTAA+TGG - chr6_3:72278821-72278840 None:intergenic 20.0%
!! GATGGTAATTAAATAAAACA+TGG - chr6_3:72279014-72279033 None:intergenic 20.0%
!! CAAACAAAAAAATAAACAGA+TGG - chr6_3:72279032-72279051 None:intergenic 20.0%
!!! CATCTGTTTATTTTTTTGTT+TGG + chr6_3:72279030-72279049 Msa0958360:intron 20.0%
!!! TTGTTTTTCTTTTGTATCAT+CGG + chr6_3:72279159-72279178 Msa0958360:intron 20.0%
!!! TTTGTTTTCTCATTGAAAAA+AGG - chr6_3:72279777-72279796 None:intergenic 20.0%
!!! TTCTATGTTGATTAATATGT+GGG - chr6_3:72279819-72279838 None:intergenic 20.0%
!!! TTTCTATGTTGATTAATATG+TGG - chr6_3:72279820-72279839 None:intergenic 20.0%
!! CAAAAAAAATACCATTCATA+AGG - chr6_3:72278595-72278614 None:intergenic 20.0%
!! TTAAGTAGATTATTAGTAAG+TGG + chr6_3:72278766-72278785 Msa0958360:intron 20.0%
!! TCATATGATTAAATAACAAG+AGG + chr6_3:72278793-72278812 Msa0958360:intron 20.0%
!! TTCTAGTATTTAACTCTAAT+GGG - chr6_3:72278820-72278839 None:intergenic 20.0%
!! ATTCTAGTATTTAACTCTAA+TGG - chr6_3:72278821-72278840 None:intergenic 20.0%
!! GATGGTAATTAAATAAAACA+TGG - chr6_3:72279014-72279033 None:intergenic 20.0%
!! CAAACAAAAAAATAAACAGA+TGG - chr6_3:72279032-72279051 None:intergenic 20.0%
!!! CATCTGTTTATTTTTTTGTT+TGG + chr6_3:72279030-72279049 Msa0958360:intron 20.0%
!!! TTGTTTTTCTTTTGTATCAT+CGG + chr6_3:72279159-72279178 Msa0958360:intron 20.0%
!!! TTTGTTTTCTCATTGAAAAA+AGG - chr6_3:72279777-72279796 None:intergenic 20.0%
!!! TTCTATGTTGATTAATATGT+GGG - chr6_3:72279819-72279838 None:intergenic 20.0%
!!! TTTCTATGTTGATTAATATG+TGG - chr6_3:72279820-72279839 None:intergenic 20.0%
!! GTTTTTATTCTTGTCATCAA+TGG - chr6_3:72278314-72278333 None:intergenic 25.0%
! ACAAGAATAAAAACAACAAC+AGG + chr6_3:72278320-72278339 Msa0958360:CDS 25.0%
! TTTGTCAAGAAGAAGAATAT+TGG + chr6_3:72278489-72278508 Msa0958360:CDS 25.0%
! AAACTTATTTGCCTTATGAA+TGG + chr6_3:72278581-72278600 Msa0958360:CDS 25.0%
!!! ATGGTATTTTTTTTGTGATC+TGG + chr6_3:72278600-72278619 Msa0958360:intron 25.0%
!! TTCTACTATTTGTTGCAAAT+TGG + chr6_3:72278688-72278707 Msa0958360:intron 25.0%
! TAATTAGTAGGTCGTTAATT+AGG + chr6_3:72278742-72278761 Msa0958360:intron 25.0%
! TCTAGTATTTAACTCTAATG+GGG - chr6_3:72278819-72278838 None:intergenic 25.0%
! AGAATGTTCTCTATATAAAG+CGG + chr6_3:72278836-72278855 Msa0958360:intron 25.0%
! ATTTCCATTCGTATGAATAA+AGG + chr6_3:72278986-72279005 Msa0958360:intron 25.0%
!! TGTTTTTCTTTTGTATCATC+GGG + chr6_3:72279160-72279179 Msa0958360:intron 25.0%
!! GTAACTTATCATATTTTACC+TGG + chr6_3:72279236-72279255 Msa0958360:intron 25.0%
! ATGTGGTTACATTCAATTAT+TGG + chr6_3:72279617-72279636 Msa0958360:intron 25.0%
!!! TAAGAAAATAGGTTTTTCGA+AGG - chr6_3:72279886-72279905 None:intergenic 25.0%
!!! TTAAGAGACTGTATTTTAGA+AGG - chr6_3:72280101-72280120 None:intergenic 25.0%
!!! TCATTTGTTGTGTAATATAC+AGG + chr6_3:72280208-72280227 Msa0958360:intron 25.0%
! AAATAACATTGAACTTTGCA+TGG + chr6_3:72280479-72280498 Msa0958360:three_prime_UTR 25.0%
!! GTTTTTATTCTTGTCATCAA+TGG - chr6_3:72278314-72278333 None:intergenic 25.0%
! ACAAGAATAAAAACAACAAC+AGG + chr6_3:72278320-72278339 Msa0958360:CDS 25.0%
! TTTGTCAAGAAGAAGAATAT+TGG + chr6_3:72278489-72278508 Msa0958360:CDS 25.0%
! AAACTTATTTGCCTTATGAA+TGG + chr6_3:72278581-72278600 Msa0958360:CDS 25.0%
!!! ATGGTATTTTTTTTGTGATC+TGG + chr6_3:72278600-72278619 Msa0958360:intron 25.0%
!! TTCTACTATTTGTTGCAAAT+TGG + chr6_3:72278688-72278707 Msa0958360:intron 25.0%
! TAATTAGTAGGTCGTTAATT+AGG + chr6_3:72278742-72278761 Msa0958360:intron 25.0%
! TCTAGTATTTAACTCTAATG+GGG - chr6_3:72278819-72278838 None:intergenic 25.0%
! AGAATGTTCTCTATATAAAG+CGG + chr6_3:72278836-72278855 Msa0958360:intron 25.0%
! ATTTCCATTCGTATGAATAA+AGG + chr6_3:72278986-72279005 Msa0958360:intron 25.0%
!! TGTTTTTCTTTTGTATCATC+GGG + chr6_3:72279160-72279179 Msa0958360:intron 25.0%
!! GTAACTTATCATATTTTACC+TGG + chr6_3:72279236-72279255 Msa0958360:intron 25.0%
! ATGTGGTTACATTCAATTAT+TGG + chr6_3:72279617-72279636 Msa0958360:intron 25.0%
!!! TAAGAAAATAGGTTTTTCGA+AGG - chr6_3:72279886-72279905 None:intergenic 25.0%
!!! TTAAGAGACTGTATTTTAGA+AGG - chr6_3:72280101-72280120 None:intergenic 25.0%
!!! TCATTTGTTGTGTAATATAC+AGG + chr6_3:72280208-72280227 Msa0958360:intron 25.0%
ATGAATATTGAGAATCGTCT+TGG + chr6_3:72278512-72278531 Msa0958360:CDS 30.0%
!! TTGTGTTTTTGTGAGCTTAT+TGG + chr6_3:72278624-72278643 Msa0958360:intron 30.0%
TGAGCTTATTGGCAATTATT+TGG + chr6_3:72278635-72278654 Msa0958360:intron 30.0%
! TTTGTTGCAAATTGGTAGTT+AGG + chr6_3:72278696-72278715 Msa0958360:intron 30.0%
TAGTTAGGATCTAATATGAG+AGG + chr6_3:72278711-72278730 Msa0958360:intron 30.0%
AGTTAGGATCTAATATGAGA+GGG + chr6_3:72278712-72278731 Msa0958360:intron 30.0%
CTATATAAAGCGGAATTCTT+AGG + chr6_3:72278846-72278865 Msa0958360:intron 30.0%
!!! ATTCTTAGGTGTTTTAGAGT+AGG + chr6_3:72278860-72278879 Msa0958360:intron 30.0%
! ACGGAATAACTTTTCTGTTT+AGG + chr6_3:72278883-72278902 Msa0958360:intron 30.0%
! CGGAATAACTTTTCTGTTTA+GGG + chr6_3:72278884-72278903 Msa0958360:intron 30.0%
GTTACTGTTAATTCGATTCT+AGG + chr6_3:72279062-72279081 Msa0958360:intron 30.0%
! TCATTCACACAATTCTAGAA+AGG - chr6_3:72279339-72279358 None:intergenic 30.0%
AATTGTGTGAATGAATACTG+AGG + chr6_3:72279345-72279364 Msa0958360:intron 30.0%
ATTGTGTGAATGAATACTGA+GGG + chr6_3:72279346-72279365 Msa0958360:intron 30.0%
ACAATAGATACGGTATAACA+AGG - chr6_3:72279399-72279418 None:intergenic 30.0%
!!! CCATTTTTTGTTACACAGAA+TGG - chr6_3:72279424-72279443 None:intergenic 30.0%
CCATTCTGTGTAACAAAAAA+TGG + chr6_3:72279421-72279440 Msa0958360:intron 30.0%
ATTTGTCACACCAAATTACA+GGG + chr6_3:72279465-72279484 Msa0958360:intron 30.0%
GTCGAAATTACATCAAAAGT+GGG - chr6_3:72279734-72279753 None:intergenic 30.0%
TGTCGAAATTACATCAAAAG+TGG - chr6_3:72279735-72279754 None:intergenic 30.0%
AAAAAGGTAGTGACTTATGA+AGG - chr6_3:72279761-72279780 None:intergenic 30.0%
AGGAAAAATGAAGTTGAACT+TGG - chr6_3:72279866-72279885 None:intergenic 30.0%
! AAACAGATTGGTGTTCTATT+TGG - chr6_3:72279931-72279950 None:intergenic 30.0%
GTTACTAGAGAAAAACAGAT+TGG - chr6_3:72279943-72279962 None:intergenic 30.0%
! AGTCTCTTAATTTTGTTCAG+TGG + chr6_3:72280111-72280130 Msa0958360:intron 30.0%
!!! TTCAGTGGTTCTTATTTTTC+TGG + chr6_3:72280126-72280145 Msa0958360:intron 30.0%
! TTGAATTCTCCTTTTGAATG+TGG + chr6_3:72280342-72280361 Msa0958360:three_prime_UTR 30.0%
AAAGGAAAACCACATTCAAA+AGG - chr6_3:72280354-72280373 None:intergenic 30.0%
ATGAATATTGAGAATCGTCT+TGG + chr6_3:72278512-72278531 Msa0958360:CDS 30.0%
!! TTGTGTTTTTGTGAGCTTAT+TGG + chr6_3:72278624-72278643 Msa0958360:intron 30.0%
TGAGCTTATTGGCAATTATT+TGG + chr6_3:72278635-72278654 Msa0958360:intron 30.0%
! TTTGTTGCAAATTGGTAGTT+AGG + chr6_3:72278696-72278715 Msa0958360:intron 30.0%
TAGTTAGGATCTAATATGAG+AGG + chr6_3:72278711-72278730 Msa0958360:intron 30.0%
AGTTAGGATCTAATATGAGA+GGG + chr6_3:72278712-72278731 Msa0958360:intron 30.0%
CTATATAAAGCGGAATTCTT+AGG + chr6_3:72278846-72278865 Msa0958360:intron 30.0%
!!! ATTCTTAGGTGTTTTAGAGT+AGG + chr6_3:72278860-72278879 Msa0958360:intron 30.0%
! ACGGAATAACTTTTCTGTTT+AGG + chr6_3:72278883-72278902 Msa0958360:intron 30.0%
! CGGAATAACTTTTCTGTTTA+GGG + chr6_3:72278884-72278903 Msa0958360:intron 30.0%
GTTACTGTTAATTCGATTCT+AGG + chr6_3:72279062-72279081 Msa0958360:intron 30.0%
! TCATTCACACAATTCTAGAA+AGG - chr6_3:72279339-72279358 None:intergenic 30.0%
AATTGTGTGAATGAATACTG+AGG + chr6_3:72279345-72279364 Msa0958360:intron 30.0%
ATTGTGTGAATGAATACTGA+GGG + chr6_3:72279346-72279365 Msa0958360:intron 30.0%
ACAATAGATACGGTATAACA+AGG - chr6_3:72279399-72279418 None:intergenic 30.0%
!!! CCATTTTTTGTTACACAGAA+TGG - chr6_3:72279424-72279443 None:intergenic 30.0%
CCATTCTGTGTAACAAAAAA+TGG + chr6_3:72279421-72279440 Msa0958360:intron 30.0%
ATTTGTCACACCAAATTACA+GGG + chr6_3:72279465-72279484 Msa0958360:intron 30.0%
GTCGAAATTACATCAAAAGT+GGG - chr6_3:72279734-72279753 None:intergenic 30.0%
TGTCGAAATTACATCAAAAG+TGG - chr6_3:72279735-72279754 None:intergenic 30.0%
AAAAAGGTAGTGACTTATGA+AGG - chr6_3:72279761-72279780 None:intergenic 30.0%
AGGAAAAATGAAGTTGAACT+TGG - chr6_3:72279866-72279885 None:intergenic 30.0%
! AAACAGATTGGTGTTCTATT+TGG - chr6_3:72279931-72279950 None:intergenic 30.0%
GTTACTAGAGAAAAACAGAT+TGG - chr6_3:72279943-72279962 None:intergenic 30.0%
! AGTCTCTTAATTTTGTTCAG+TGG + chr6_3:72280111-72280130 Msa0958360:intron 30.0%
!!! TTCAGTGGTTCTTATTTTTC+TGG + chr6_3:72280126-72280145 Msa0958360:intron 30.0%
! TTGAATTCTCCTTTTGAATG+TGG + chr6_3:72280342-72280361 Msa0958360:three_prime_UTR 30.0%
AAAGGAAAACCACATTCAAA+AGG - chr6_3:72280354-72280373 None:intergenic 30.0%
AAAACAACAACAGGAATCGT+AGG + chr6_3:72278329-72278348 Msa0958360:CDS 35.0%
TTAACACTTCTCTTGCGTTT+GGG - chr6_3:72278367-72278386 None:intergenic 35.0%
ATTAACACTTCTCTTGCGTT+TGG - chr6_3:72278368-72278387 None:intergenic 35.0%
AAAAAGGTTCCAGAAGACAA+AGG + chr6_3:72278419-72278438 Msa0958360:CDS 35.0%
AAAAGGTTCCAGAAGACAAA+GGG + chr6_3:72278420-72278439 Msa0958360:CDS 35.0%
ATATTGAGAATCGTCTTGGT+TGG + chr6_3:72278516-72278535 Msa0958360:CDS 35.0%
TATTGAGAATCGTCTTGGTT+GGG + chr6_3:72278517-72278536 Msa0958360:CDS 35.0%
GCTTATTGGCAATTATTTGG+AGG + chr6_3:72278638-72278657 Msa0958360:intron 35.0%
!! GAGGGTGTTAAGTAATTAGT+AGG + chr6_3:72278730-72278749 Msa0958360:intron 35.0%
!!! TTAGGTGTTTTAGAGTAGGA+CGG + chr6_3:72278864-72278883 Msa0958360:intron 35.0%
!! TAATTCGATTCTAGGATCCA+TGG + chr6_3:72279070-72279089 Msa0958360:intron 35.0%
!! AATTCGATTCTAGGATCCAT+GGG + chr6_3:72279071-72279090 Msa0958360:intron 35.0%
! TTTTCAGCATCCCAAATGAT+AGG - chr6_3:72279099-72279118 None:intergenic 35.0%
! ATTTGGGATGCTGAAAAACT+GGG + chr6_3:72279102-72279121 Msa0958360:intron 35.0%
! TTTCTTTTGTATCATCGGGT+TGG + chr6_3:72279164-72279183 Msa0958360:intron 35.0%
! AACATAGAGCATTATGTACC+AGG - chr6_3:72279257-72279276 None:intergenic 35.0%
CTCTATGTTGTTCATTCATG+TGG + chr6_3:72279268-72279287 Msa0958360:intron 35.0%
TTCATGTGGTGTGATGAATT+TGG + chr6_3:72279282-72279301 Msa0958360:intron 35.0%
TCATGTGGTGTGATGAATTT+GGG + chr6_3:72279283-72279302 Msa0958360:intron 35.0%
CAGAATGGACACAATAGATA+CGG - chr6_3:72279409-72279428 None:intergenic 35.0%
GATTTGTCACACCAAATTAC+AGG + chr6_3:72279464-72279483 Msa0958360:intron 35.0%
CTGTAATCTTCCCTGTAATT+TGG - chr6_3:72279478-72279497 None:intergenic 35.0%
!! TGTGGGTTTTATAGTCTTGA+TGG - chr6_3:72279802-72279821 None:intergenic 35.0%
AGTTGAACTTGGCGATTAAT+TGG - chr6_3:72279855-72279874 None:intergenic 35.0%
! GTTCTAGGCTGTAAGAAAAT+AGG - chr6_3:72279897-72279916 None:intergenic 35.0%
GTTCTATTTGGATACAGTTG+TGG - chr6_3:72279919-72279938 None:intergenic 35.0%
GAACAGAAATGTTGACAAAG+AGG - chr6_3:72280016-72280035 None:intergenic 35.0%
CAGATAACGACAGACAAATA+GGG - chr6_3:72280065-72280084 None:intergenic 35.0%
TCAGATAACGACAGACAAAT+AGG - chr6_3:72280066-72280085 None:intergenic 35.0%
GTCGTTATCTGATATTATCG+AGG + chr6_3:72280074-72280093 Msa0958360:intron 35.0%
!!! GTGGTTCTTATTTTTCTGGT+TGG + chr6_3:72280130-72280149 Msa0958360:intron 35.0%
GTAATATACAGGTTTGTCGA+TGG + chr6_3:72280219-72280238 Msa0958360:intron 35.0%
!!! GCTTTTTGGGTTCTTCATTA+GGG - chr6_3:72280297-72280316 None:intergenic 35.0%
TCTAATATAGCTGACGTTCA+TGG - chr6_3:72280319-72280338 None:intergenic 35.0%
TTCAGATTCAACAGTCTTTC+AGG + chr6_3:72280409-72280428 Msa0958360:three_prime_UTR 35.0%
TCAGATTCAACAGTCTTTCA+GGG + chr6_3:72280410-72280429 Msa0958360:three_prime_UTR 35.0%
!!! TTCAAGTTGTTTTGGAGCAA+AGG - chr6_3:72280442-72280461 None:intergenic 35.0%
!!! TCAACCAGTTCAAGTTGTTT+TGG - chr6_3:72280450-72280469 None:intergenic 35.0%
AAAACAACAACAGGAATCGT+AGG + chr6_3:72278329-72278348 Msa0958360:CDS 35.0%
TTAACACTTCTCTTGCGTTT+GGG - chr6_3:72278367-72278386 None:intergenic 35.0%
ATTAACACTTCTCTTGCGTT+TGG - chr6_3:72278368-72278387 None:intergenic 35.0%
AAAAAGGTTCCAGAAGACAA+AGG + chr6_3:72278419-72278438 Msa0958360:CDS 35.0%
AAAAGGTTCCAGAAGACAAA+GGG + chr6_3:72278420-72278439 Msa0958360:CDS 35.0%
ATATTGAGAATCGTCTTGGT+TGG + chr6_3:72278516-72278535 Msa0958360:CDS 35.0%
TATTGAGAATCGTCTTGGTT+GGG + chr6_3:72278517-72278536 Msa0958360:CDS 35.0%
GCTTATTGGCAATTATTTGG+AGG + chr6_3:72278638-72278657 Msa0958360:intron 35.0%
!! GAGGGTGTTAAGTAATTAGT+AGG + chr6_3:72278730-72278749 Msa0958360:intron 35.0%
!!! TTAGGTGTTTTAGAGTAGGA+CGG + chr6_3:72278864-72278883 Msa0958360:intron 35.0%
!! TAATTCGATTCTAGGATCCA+TGG + chr6_3:72279070-72279089 Msa0958360:intron 35.0%
!! AATTCGATTCTAGGATCCAT+GGG + chr6_3:72279071-72279090 Msa0958360:intron 35.0%
! TTTTCAGCATCCCAAATGAT+AGG - chr6_3:72279099-72279118 None:intergenic 35.0%
! ATTTGGGATGCTGAAAAACT+GGG + chr6_3:72279102-72279121 Msa0958360:intron 35.0%
! TTTCTTTTGTATCATCGGGT+TGG + chr6_3:72279164-72279183 Msa0958360:intron 35.0%
! AACATAGAGCATTATGTACC+AGG - chr6_3:72279257-72279276 None:intergenic 35.0%
CTCTATGTTGTTCATTCATG+TGG + chr6_3:72279268-72279287 Msa0958360:intron 35.0%
TTCATGTGGTGTGATGAATT+TGG + chr6_3:72279282-72279301 Msa0958360:intron 35.0%
TCATGTGGTGTGATGAATTT+GGG + chr6_3:72279283-72279302 Msa0958360:intron 35.0%
CAGAATGGACACAATAGATA+CGG - chr6_3:72279409-72279428 None:intergenic 35.0%
GATTTGTCACACCAAATTAC+AGG + chr6_3:72279464-72279483 Msa0958360:intron 35.0%
CTGTAATCTTCCCTGTAATT+TGG - chr6_3:72279478-72279497 None:intergenic 35.0%
!! TGTGGGTTTTATAGTCTTGA+TGG - chr6_3:72279802-72279821 None:intergenic 35.0%
AGTTGAACTTGGCGATTAAT+TGG - chr6_3:72279855-72279874 None:intergenic 35.0%
! GTTCTAGGCTGTAAGAAAAT+AGG - chr6_3:72279897-72279916 None:intergenic 35.0%
GTTCTATTTGGATACAGTTG+TGG - chr6_3:72279919-72279938 None:intergenic 35.0%
GAACAGAAATGTTGACAAAG+AGG - chr6_3:72280016-72280035 None:intergenic 35.0%
CAGATAACGACAGACAAATA+GGG - chr6_3:72280065-72280084 None:intergenic 35.0%
TCAGATAACGACAGACAAAT+AGG - chr6_3:72280066-72280085 None:intergenic 35.0%
GTCGTTATCTGATATTATCG+AGG + chr6_3:72280074-72280093 Msa0958360:intron 35.0%
!!! GTGGTTCTTATTTTTCTGGT+TGG + chr6_3:72280130-72280149 Msa0958360:intron 35.0%
GTAATATACAGGTTTGTCGA+TGG + chr6_3:72280219-72280238 Msa0958360:intron 35.0%
!!! GCTTTTTGGGTTCTTCATTA+GGG - chr6_3:72280297-72280316 None:intergenic 35.0%
TCTAATATAGCTGACGTTCA+TGG - chr6_3:72280319-72280338 None:intergenic 35.0%
TTCAGATTCAACAGTCTTTC+AGG + chr6_3:72280409-72280428 Msa0958360:three_prime_UTR 35.0%
TCAGATTCAACAGTCTTTCA+GGG + chr6_3:72280410-72280429 Msa0958360:three_prime_UTR 35.0%
!!! TTCAAGTTGTTTTGGAGCAA+AGG - chr6_3:72280442-72280461 None:intergenic 35.0%
!!! TCAACCAGTTCAAGTTGTTT+TGG - chr6_3:72280450-72280469 None:intergenic 35.0%
CGTCTAGTGTCTTACTATAG+AGG - chr6_3:72278394-72278413 None:intergenic 40.0%
GACACTAGACGAGATCAAAA+AGG + chr6_3:72278403-72278422 Msa0958360:CDS 40.0%
TTACGATACCCTTTGTCTTC+TGG - chr6_3:72278431-72278450 None:intergenic 40.0%
ATTGAGAATCGTCTTGGTTG+GGG + chr6_3:72278518-72278537 Msa0958360:CDS 40.0%
! TTTCTGTTTAGGGTCAGAGT+AGG + chr6_3:72278894-72278913 Msa0958360:intron 40.0%
!! GATTCCTCTTTGAGTTGTGT+CGG + chr6_3:72278916-72278935 Msa0958360:intron 40.0%
GGTGCCTTTATTCATACGAA+TGG - chr6_3:72278993-72279012 None:intergenic 40.0%
ATCCATGGGTTCCTATCATT+TGG + chr6_3:72279085-72279104 Msa0958360:intron 40.0%
TCCATGGGTTCCTATCATTT+GGG + chr6_3:72279086-72279105 Msa0958360:intron 40.0%
! CATTTGGGATGCTGAAAAAC+TGG + chr6_3:72279101-72279120 Msa0958360:intron 40.0%
! TTTGGGATGCTGAAAAACTG+GGG + chr6_3:72279103-72279122 Msa0958360:intron 40.0%
GAATGAATACTGAGGGAAAC+TGG + chr6_3:72279353-72279372 Msa0958360:intron 40.0%
TGTCAGATACCAACACATGT+CGG - chr6_3:72279592-72279611 None:intergenic 40.0%
TGGTATCTGACATCAACATG+TGG + chr6_3:72279600-72279619 Msa0958360:intron 40.0%
TTGGATACAGTTGTGGTTCT+AGG - chr6_3:72279912-72279931 None:intergenic 40.0%
TCACTAGTCGTCATAACACA+AGG - chr6_3:72280167-72280186 None:intergenic 40.0%
GGCAAAGATAGAAGAACTTG+TGG + chr6_3:72280240-72280259 Msa0958360:CDS 40.0%
GTGGCTGAAACAAGAAAAGA+TGG + chr6_3:72280259-72280278 Msa0958360:CDS 40.0%
!!! GGCTTTTTGGGTTCTTCATT+AGG - chr6_3:72280298-72280317 None:intergenic 40.0%
!!! GTTGTTTTGGAGCAAAGGAT+TGG - chr6_3:72280437-72280456 None:intergenic 40.0%
TGCTCCAAAACAACTTGAAC+TGG + chr6_3:72280443-72280462 Msa0958360:three_prime_UTR 40.0%
CGTCTAGTGTCTTACTATAG+AGG - chr6_3:72278394-72278413 None:intergenic 40.0%
GACACTAGACGAGATCAAAA+AGG + chr6_3:72278403-72278422 Msa0958360:CDS 40.0%
TTACGATACCCTTTGTCTTC+TGG - chr6_3:72278431-72278450 None:intergenic 40.0%
ATTGAGAATCGTCTTGGTTG+GGG + chr6_3:72278518-72278537 Msa0958360:CDS 40.0%
! TTTCTGTTTAGGGTCAGAGT+AGG + chr6_3:72278894-72278913 Msa0958360:intron 40.0%
!! GATTCCTCTTTGAGTTGTGT+CGG + chr6_3:72278916-72278935 Msa0958360:intron 40.0%
GGTGCCTTTATTCATACGAA+TGG - chr6_3:72278993-72279012 None:intergenic 40.0%
ATCCATGGGTTCCTATCATT+TGG + chr6_3:72279085-72279104 Msa0958360:intron 40.0%
TCCATGGGTTCCTATCATTT+GGG + chr6_3:72279086-72279105 Msa0958360:intron 40.0%
! CATTTGGGATGCTGAAAAAC+TGG + chr6_3:72279101-72279120 Msa0958360:intron 40.0%
! TTTGGGATGCTGAAAAACTG+GGG + chr6_3:72279103-72279122 Msa0958360:intron 40.0%
GAATGAATACTGAGGGAAAC+TGG + chr6_3:72279353-72279372 Msa0958360:intron 40.0%
TGTCAGATACCAACACATGT+CGG - chr6_3:72279592-72279611 None:intergenic 40.0%
TGGTATCTGACATCAACATG+TGG + chr6_3:72279600-72279619 Msa0958360:intron 40.0%
TTGGATACAGTTGTGGTTCT+AGG - chr6_3:72279912-72279931 None:intergenic 40.0%
TCACTAGTCGTCATAACACA+AGG - chr6_3:72280167-72280186 None:intergenic 40.0%
GGCAAAGATAGAAGAACTTG+TGG + chr6_3:72280240-72280259 Msa0958360:CDS 40.0%
GTGGCTGAAACAAGAAAAGA+TGG + chr6_3:72280259-72280278 Msa0958360:CDS 40.0%
!!! GGCTTTTTGGGTTCTTCATT+AGG - chr6_3:72280298-72280317 None:intergenic 40.0%
!!! GTTGTTTTGGAGCAAAGGAT+TGG - chr6_3:72280437-72280456 None:intergenic 40.0%
TGCTCCAAAACAACTTGAAC+TGG + chr6_3:72280443-72280462 Msa0958360:three_prime_UTR 40.0%
GTTGAAAGCTTTACGCGTCT+TGG + chr6_3:72278458-72278477 Msa0958360:CDS 45.0%
CTTTACGCGTCTTGGACTTA+AGG + chr6_3:72278466-72278485 Msa0958360:CDS 45.0%
TCCCAAATGATAGGAACCCA+TGG - chr6_3:72279090-72279109 None:intergenic 45.0%
TCTAAGTGTCCGACATGTGT+TGG + chr6_3:72279580-72279599 Msa0958360:intron 45.0%
AAAGTGGGCACAACTTGTGT+CGG - chr6_3:72279719-72279738 None:intergenic 45.0%
TAGGGAGACTTGGAACAAAG+AGG - chr6_3:72280047-72280066 None:intergenic 45.0%
GACAGACAAATAGGGAGACT+TGG - chr6_3:72280057-72280076 None:intergenic 45.0%
!! ACAAGAAAAGATGGTGCTGC+TGG + chr6_3:72280268-72280287 Msa0958360:CDS 45.0%
! GCTGACGTTCATGGCTTTTT+GGG - chr6_3:72280310-72280329 None:intergenic 45.0%
! AGCTGACGTTCATGGCTTTT+TGG - chr6_3:72280311-72280330 None:intergenic 45.0%
GTTGAAAGCTTTACGCGTCT+TGG + chr6_3:72278458-72278477 Msa0958360:CDS 45.0%
CTTTACGCGTCTTGGACTTA+AGG + chr6_3:72278466-72278485 Msa0958360:CDS 45.0%
TCCCAAATGATAGGAACCCA+TGG - chr6_3:72279090-72279109 None:intergenic 45.0%
TCTAAGTGTCCGACATGTGT+TGG + chr6_3:72279580-72279599 Msa0958360:intron 45.0%
AAAGTGGGCACAACTTGTGT+CGG - chr6_3:72279719-72279738 None:intergenic 45.0%
TAGGGAGACTTGGAACAAAG+AGG - chr6_3:72280047-72280066 None:intergenic 45.0%
GACAGACAAATAGGGAGACT+TGG - chr6_3:72280057-72280076 None:intergenic 45.0%
!! ACAAGAAAAGATGGTGCTGC+TGG + chr6_3:72280268-72280287 Msa0958360:CDS 45.0%
! GCTGACGTTCATGGCTTTTT+GGG - chr6_3:72280310-72280329 None:intergenic 45.0%
! AGCTGACGTTCATGGCTTTT+TGG - chr6_3:72280311-72280330 None:intergenic 45.0%
GAAGATGTTTCTCCGAGCGA+CGG + chr6_3:72278283-72278302 Msa0958360:exon 50.0%
AGCTCCGACACAACTCAAAG+AGG - chr6_3:72278923-72278942 None:intergenic 50.0%
TTGTGTCGGAGCTTTGCTCT+GGG + chr6_3:72278930-72278949 Msa0958360:intron 50.0%
AAGTGGGCACAACTTGTGTC+GGG - chr6_3:72279718-72279737 None:intergenic 50.0%
GAAGATGTTTCTCCGAGCGA+CGG + chr6_3:72278283-72278302 Msa0958360:exon 50.0%
AGCTCCGACACAACTCAAAG+AGG - chr6_3:72278923-72278942 None:intergenic 50.0%
TTGTGTCGGAGCTTTGCTCT+GGG + chr6_3:72278930-72278949 Msa0958360:intron 50.0%
AAGTGGGCACAACTTGTGTC+GGG - chr6_3:72279718-72279737 None:intergenic 50.0%
GAATCGTCTTGGTTGGGGTC+AGG + chr6_3:72278523-72278542 Msa0958360:CDS 55.0%
GTTGTGTCGGAGCTTTGCTC+TGG + chr6_3:72278929-72278948 Msa0958360:intron 55.0%
AACTTGTGTCGGGGACTCGA+GGG - chr6_3:72279708-72279727 None:intergenic 55.0%
AGTGGGCACAACTTGTGTCG+GGG - chr6_3:72279717-72279736 None:intergenic 55.0%
GAATCGTCTTGGTTGGGGTC+AGG + chr6_3:72278523-72278542 Msa0958360:CDS 55.0%
GTTGTGTCGGAGCTTTGCTC+TGG + chr6_3:72278929-72278948 Msa0958360:intron 55.0%
AACTTGTGTCGGGGACTCGA+GGG - chr6_3:72279708-72279727 None:intergenic 55.0%
AGTGGGCACAACTTGTGTCG+GGG - chr6_3:72279717-72279736 None:intergenic 55.0%
!! GGGGACTCGAGGGTATCTAG+GGG - chr6_3:72279698-72279717 None:intergenic 60.0%
!! CGGGGACTCGAGGGTATCTA+GGG - chr6_3:72279699-72279718 None:intergenic 60.0%
!! TCGGGGACTCGAGGGTATCT+AGG - chr6_3:72279700-72279719 None:intergenic 60.0%
CAACTTGTGTCGGGGACTCG+AGG - chr6_3:72279709-72279728 None:intergenic 60.0%
!! GGGGACTCGAGGGTATCTAG+GGG - chr6_3:72279698-72279717 None:intergenic 60.0%
!! CGGGGACTCGAGGGTATCTA+GGG - chr6_3:72279699-72279718 None:intergenic 60.0%
!! TCGGGGACTCGAGGGTATCT+AGG - chr6_3:72279700-72279719 None:intergenic 60.0%
CAACTTGTGTCGGGGACTCG+AGG - chr6_3:72279709-72279728 None:intergenic 60.0%
TGTTTCTCCGAGCGACGGCG+CGG + chr6_3:72278288-72278307 Msa0958360:CDS 65.0%
TGTTTCTCCGAGCGACGGCG+CGG + chr6_3:72278288-72278307 Msa0958360:CDS 65.0%
TCAATGGCCGCGCCGTCGCT+CGG - chr6_3:72278298-72278317 None:intergenic 70.0%
TCAATGGCCGCGCCGTCGCT+CGG - chr6_3:72278298-72278317 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 72278265 72280500 72278265 ID=Msa0958360;Name=Msa0958360
chr6_3 mRNA 72278265 72280500 72278265 ID=Msa0958360-mRNA-1;Parent=Msa0958360;Name=Msa0958360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=22|1|1|1|1|1|2|179|135
chr6_3 exon 72278265 72278602 72278265 ID=Msa0958360-mRNA-1:exon:13115;Parent=Msa0958360-mRNA-1
chr6_3 exon 72280230 72280500 72280230 ID=Msa0958360-mRNA-1:exon:13116;Parent=Msa0958360-mRNA-1
chr6_3 five_prime_UTR 72278265 72278286 72278265 ID=Msa0958360-mRNA-1:five_prime_utr;Parent=Msa0958360-mRNA-1
chr6_3 CDS 72278287 72278602 72278287 ID=Msa0958360-mRNA-1:cds;Parent=Msa0958360-mRNA-1
chr6_3 CDS 72280230 72280321 72280230 ID=Msa0958360-mRNA-1:cds;Parent=Msa0958360-mRNA-1
chr6_3 three_prime_UTR 72280322 72280500 72280322 ID=Msa0958360-mRNA-1:three_prime_utr;Parent=Msa0958360-mRNA-1
Gene Sequence

>Msa0958360

ATGTTTCTCCGAGCGACGGCGCGGCCATTGATGACAAGAATAAAAACAACAACAGGAATCGTAGGACTAGACGTTGTCCCAAACGCAAGAGAAGTGTTAATTAACCTCTATAGTAAGACACTAGACGAGATCAAAAAGGTTCCAGAAGACAAAGGGTATCGTAAAGCTGCTGTTGAAAGCTTTACGCGTCTTGGACTTAAGGTTTGTCAAGAAGAAGAATATTGGATGAATATTGAGAATCGTCTTGGTTGGGGTCAGGTTGAAGAGCTTATTGAAAAAGCTGAAGATGAACTCAAACTTATTTGCCTTATGAATGGTTTGTCGATGGCAAAGATAGAAGAACTTGTGGCTGAAACAAGAAAAGATGGTGCTGCTGGAAACCCTAATGAAGAACCCAAAAAGCCATGA

Protein sequence

>Msa0958360

MFLRATARPLMTRIKTTTGIVGLDVVPNAREVLINLYSKTLDEIKKVPEDKGYRKAAVESFTRLGLKVCQEEEYWMNIENRLGWGQVEELIEKAEDELKLICLMNGLSMAKIEELVAETRKDGAAGNPNEEPKKP*