Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0958360 | XP_013452347.2 | 60.326 | 184 | 23 | 3 | 1 | 135 | 1 | 183 | 1.66e-56 | 184 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0958360 | sp|Q9FLX7|NDUA5_ARATH | 73.077 | 104 | 27 | 1 | 1 | 104 | 1 | 103 | 1.22e-43 | 144 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0001450 | Msa0958360 | 0.805392 | 1.364813e-49 | -8.615850e-47 |
Msa0602870 | Msa0958360 | 0.802210 | 6.249964e-49 | -8.615850e-47 |
Msa0643890 | Msa0958360 | 0.800899 | 1.160759e-48 | -8.615850e-47 |
Msa0683730 | Msa0958360 | 0.800611 | 1.328822e-48 | -8.615850e-47 |
Msa0729720 | Msa0958360 | 0.804849 | 1.773323e-49 | -8.615850e-47 |
Msa0808080 | Msa0958360 | 0.810804 | 9.606713e-51 | -8.615850e-47 |
Msa0140820 | Msa0958360 | 0.800377 | 1.483102e-48 | -8.615850e-47 |
Msa0218780 | Msa0958360 | 0.801773 | 7.685212e-49 | -8.615850e-47 |
Msa0453350 | Msa0958360 | 0.803277 | 3.763887e-49 | -8.615850e-47 |
Msa0849030 | Msa0958360 | 0.806487 | 8.031324e-50 | -8.615850e-47 |
Msa0958360 | Msa0992020 | 0.987978 | 2.987692e-172 | -8.615850e-47 |
Msa0958360 | Msa0993730 | 0.983964 | 3.328393e-159 | -8.615850e-47 |
Msa0958360 | Msa0993750 | 0.988777 | 2.285328e-175 | -8.615850e-47 |
Msa0958360 | Msa1005990 | 0.804148 | 2.482359e-49 | -8.615850e-47 |
Msa0958360 | Msa1048160 | 0.801155 | 1.029040e-48 | -8.615850e-47 |
Msa0958360 | Msa1100050 | 0.802553 | 5.312839e-49 | -8.615850e-47 |
Msa0958360 | Msa1135470 | 0.821235 | 4.497048e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0958360 | MtrunA17_Chr6g0470231 | 60.326 | 184 | 23 | 3 | 1 | 135 | 87 | 269 | 3.51e-60 | 186 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0958360 | AT5G52840.2 | 72.642 | 106 | 28 | 1 | 1 | 106 | 1 | 105 | 6.80e-46 | 145 |
Msa0958360 | AT5G52840.1 | 73.077 | 104 | 27 | 1 | 1 | 104 | 1 | 103 | 1.24e-44 | 144 |
Find 30 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCAGATTCAACAGTCTTTC+AGG | 0.170090 | 6_3:+72280409 | Msa0958360:three_prime_UTR |
ATTTAGTTTGATGAAATAAA+AGG | 0.246089 | 6_3:-72280369 | None:intergenic |
TTACGATACCCTTTGTCTTC+TGG | 0.257585 | 6_3:-72278428 | None:intergenic |
TCAACCAGTTCAAGTTGTTT+TGG | 0.282704 | 6_3:-72280447 | None:intergenic |
CTTTACGCGTCTTGGACTTA+AGG | 0.317074 | 6_3:+72278466 | Msa0958360:CDS |
TGCTCCAAAACAACTTGAAC+TGG | 0.351627 | 6_3:+72280443 | Msa0958360:three_prime_UTR |
ATTAACACTTCTCTTGCGTT+TGG | 0.354432 | 6_3:-72278365 | None:intergenic |
TTAACACTTCTCTTGCGTTT+GGG | 0.383857 | 6_3:-72278364 | None:intergenic |
TTTGTCAAGAAGAAGAATAT+TGG | 0.391623 | 6_3:+72278489 | Msa0958360:CDS |
TCTAATATAGCTGACGTTCA+TGG | 0.401029 | 6_3:-72280316 | None:intergenic |
TATTGAGAATCGTCTTGGTT+GGG | 0.401668 | 6_3:+72278517 | Msa0958360:CDS |
GTTGAAAGCTTTACGCGTCT+TGG | 0.426516 | 6_3:+72278458 | Msa0958360:CDS |
GACACTAGACGAGATCAAAA+AGG | 0.435244 | 6_3:+72278403 | Msa0958360:CDS |
AAACTTATTTGCCTTATGAA+TGG | 0.436503 | 6_3:+72278581 | Msa0958360:CDS |
GAATCGTCTTGGTTGGGGTC+AGG | 0.444696 | 6_3:+72278523 | Msa0958360:CDS |
CGTCTAGTGTCTTACTATAG+AGG | 0.468796 | 6_3:-72278391 | None:intergenic |
TCAATGGCCGCGCCGTCGCT+CGG | 0.471122 | 6_3:-72278295 | None:intergenic |
TCAGATTCAACAGTCTTTCA+GGG | 0.476603 | 6_3:+72280410 | Msa0958360:three_prime_UTR |
ACAAGAAAAGATGGTGCTGC+TGG | 0.493227 | 6_3:+72280268 | Msa0958360:CDS |
AAAGGAAAACCACATTCAAA+AGG | 0.501827 | 6_3:-72280351 | None:intergenic |
ATTGAGAATCGTCTTGGTTG+GGG | 0.506457 | 6_3:+72278518 | Msa0958360:CDS |
ATGAATATTGAGAATCGTCT+TGG | 0.525507 | 6_3:+72278512 | Msa0958360:CDS |
ATATTGAGAATCGTCTTGGT+TGG | 0.528056 | 6_3:+72278516 | Msa0958360:CDS |
AAAAGGTTCCAGAAGACAAA+GGG | 0.534276 | 6_3:+72278420 | Msa0958360:CDS |
AAAACAACAACAGGAATCGT+AGG | 0.600187 | 6_3:+72278329 | Msa0958360:CDS |
GTAATATACAGGTTTGTCGA+TGG | 0.603158 | 6_3:+72280219 | Msa0958360:intron |
GTGGCTGAAACAAGAAAAGA+TGG | 0.607028 | 6_3:+72280259 | Msa0958360:CDS |
GGCAAAGATAGAAGAACTTG+TGG | 0.623499 | 6_3:+72280240 | Msa0958360:CDS |
GAAGATGTTTCTCCGAGCGA+CGG | 0.629217 | 6_3:+72278283 | Msa0958360:exon |
TGTTTCTCCGAGCGACGGCG+CGG | 0.688196 | 6_3:+72278288 | Msa0958360:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTGTTATTTAATCATATGAT+AGG | - | chr6_3:72278792-72278811 | None:intergenic | 15.0% |
!!! | ATTTAGTTTGATGAAATAAA+AGG | - | chr6_3:72280372-72280391 | None:intergenic | 15.0% |
!!! | TTGTTATTTAATCATATGAT+AGG | - | chr6_3:72278792-72278811 | None:intergenic | 15.0% |
!!! | ATTTAGTTTGATGAAATAAA+AGG | - | chr6_3:72280372-72280391 | None:intergenic | 15.0% |
!! | CAAAAAAAATACCATTCATA+AGG | - | chr6_3:72278595-72278614 | None:intergenic | 20.0% |
!! | TTAAGTAGATTATTAGTAAG+TGG | + | chr6_3:72278766-72278785 | Msa0958360:intron | 20.0% |
!! | TCATATGATTAAATAACAAG+AGG | + | chr6_3:72278793-72278812 | Msa0958360:intron | 20.0% |
!! | TTCTAGTATTTAACTCTAAT+GGG | - | chr6_3:72278820-72278839 | None:intergenic | 20.0% |
!! | ATTCTAGTATTTAACTCTAA+TGG | - | chr6_3:72278821-72278840 | None:intergenic | 20.0% |
!! | GATGGTAATTAAATAAAACA+TGG | - | chr6_3:72279014-72279033 | None:intergenic | 20.0% |
!! | CAAACAAAAAAATAAACAGA+TGG | - | chr6_3:72279032-72279051 | None:intergenic | 20.0% |
!!! | CATCTGTTTATTTTTTTGTT+TGG | + | chr6_3:72279030-72279049 | Msa0958360:intron | 20.0% |
!!! | TTGTTTTTCTTTTGTATCAT+CGG | + | chr6_3:72279159-72279178 | Msa0958360:intron | 20.0% |
!!! | TTTGTTTTCTCATTGAAAAA+AGG | - | chr6_3:72279777-72279796 | None:intergenic | 20.0% |
!!! | TTCTATGTTGATTAATATGT+GGG | - | chr6_3:72279819-72279838 | None:intergenic | 20.0% |
!!! | TTTCTATGTTGATTAATATG+TGG | - | chr6_3:72279820-72279839 | None:intergenic | 20.0% |
!! | CAAAAAAAATACCATTCATA+AGG | - | chr6_3:72278595-72278614 | None:intergenic | 20.0% |
!! | TTAAGTAGATTATTAGTAAG+TGG | + | chr6_3:72278766-72278785 | Msa0958360:intron | 20.0% |
!! | TCATATGATTAAATAACAAG+AGG | + | chr6_3:72278793-72278812 | Msa0958360:intron | 20.0% |
!! | TTCTAGTATTTAACTCTAAT+GGG | - | chr6_3:72278820-72278839 | None:intergenic | 20.0% |
!! | ATTCTAGTATTTAACTCTAA+TGG | - | chr6_3:72278821-72278840 | None:intergenic | 20.0% |
!! | GATGGTAATTAAATAAAACA+TGG | - | chr6_3:72279014-72279033 | None:intergenic | 20.0% |
!! | CAAACAAAAAAATAAACAGA+TGG | - | chr6_3:72279032-72279051 | None:intergenic | 20.0% |
!!! | CATCTGTTTATTTTTTTGTT+TGG | + | chr6_3:72279030-72279049 | Msa0958360:intron | 20.0% |
!!! | TTGTTTTTCTTTTGTATCAT+CGG | + | chr6_3:72279159-72279178 | Msa0958360:intron | 20.0% |
!!! | TTTGTTTTCTCATTGAAAAA+AGG | - | chr6_3:72279777-72279796 | None:intergenic | 20.0% |
!!! | TTCTATGTTGATTAATATGT+GGG | - | chr6_3:72279819-72279838 | None:intergenic | 20.0% |
!!! | TTTCTATGTTGATTAATATG+TGG | - | chr6_3:72279820-72279839 | None:intergenic | 20.0% |
!! | GTTTTTATTCTTGTCATCAA+TGG | - | chr6_3:72278314-72278333 | None:intergenic | 25.0% |
! | ACAAGAATAAAAACAACAAC+AGG | + | chr6_3:72278320-72278339 | Msa0958360:CDS | 25.0% |
! | TTTGTCAAGAAGAAGAATAT+TGG | + | chr6_3:72278489-72278508 | Msa0958360:CDS | 25.0% |
! | AAACTTATTTGCCTTATGAA+TGG | + | chr6_3:72278581-72278600 | Msa0958360:CDS | 25.0% |
!!! | ATGGTATTTTTTTTGTGATC+TGG | + | chr6_3:72278600-72278619 | Msa0958360:intron | 25.0% |
!! | TTCTACTATTTGTTGCAAAT+TGG | + | chr6_3:72278688-72278707 | Msa0958360:intron | 25.0% |
! | TAATTAGTAGGTCGTTAATT+AGG | + | chr6_3:72278742-72278761 | Msa0958360:intron | 25.0% |
! | TCTAGTATTTAACTCTAATG+GGG | - | chr6_3:72278819-72278838 | None:intergenic | 25.0% |
! | AGAATGTTCTCTATATAAAG+CGG | + | chr6_3:72278836-72278855 | Msa0958360:intron | 25.0% |
! | ATTTCCATTCGTATGAATAA+AGG | + | chr6_3:72278986-72279005 | Msa0958360:intron | 25.0% |
!! | TGTTTTTCTTTTGTATCATC+GGG | + | chr6_3:72279160-72279179 | Msa0958360:intron | 25.0% |
!! | GTAACTTATCATATTTTACC+TGG | + | chr6_3:72279236-72279255 | Msa0958360:intron | 25.0% |
! | ATGTGGTTACATTCAATTAT+TGG | + | chr6_3:72279617-72279636 | Msa0958360:intron | 25.0% |
!!! | TAAGAAAATAGGTTTTTCGA+AGG | - | chr6_3:72279886-72279905 | None:intergenic | 25.0% |
!!! | TTAAGAGACTGTATTTTAGA+AGG | - | chr6_3:72280101-72280120 | None:intergenic | 25.0% |
!!! | TCATTTGTTGTGTAATATAC+AGG | + | chr6_3:72280208-72280227 | Msa0958360:intron | 25.0% |
! | AAATAACATTGAACTTTGCA+TGG | + | chr6_3:72280479-72280498 | Msa0958360:three_prime_UTR | 25.0% |
!! | GTTTTTATTCTTGTCATCAA+TGG | - | chr6_3:72278314-72278333 | None:intergenic | 25.0% |
! | ACAAGAATAAAAACAACAAC+AGG | + | chr6_3:72278320-72278339 | Msa0958360:CDS | 25.0% |
! | TTTGTCAAGAAGAAGAATAT+TGG | + | chr6_3:72278489-72278508 | Msa0958360:CDS | 25.0% |
! | AAACTTATTTGCCTTATGAA+TGG | + | chr6_3:72278581-72278600 | Msa0958360:CDS | 25.0% |
!!! | ATGGTATTTTTTTTGTGATC+TGG | + | chr6_3:72278600-72278619 | Msa0958360:intron | 25.0% |
!! | TTCTACTATTTGTTGCAAAT+TGG | + | chr6_3:72278688-72278707 | Msa0958360:intron | 25.0% |
! | TAATTAGTAGGTCGTTAATT+AGG | + | chr6_3:72278742-72278761 | Msa0958360:intron | 25.0% |
! | TCTAGTATTTAACTCTAATG+GGG | - | chr6_3:72278819-72278838 | None:intergenic | 25.0% |
! | AGAATGTTCTCTATATAAAG+CGG | + | chr6_3:72278836-72278855 | Msa0958360:intron | 25.0% |
! | ATTTCCATTCGTATGAATAA+AGG | + | chr6_3:72278986-72279005 | Msa0958360:intron | 25.0% |
!! | TGTTTTTCTTTTGTATCATC+GGG | + | chr6_3:72279160-72279179 | Msa0958360:intron | 25.0% |
!! | GTAACTTATCATATTTTACC+TGG | + | chr6_3:72279236-72279255 | Msa0958360:intron | 25.0% |
! | ATGTGGTTACATTCAATTAT+TGG | + | chr6_3:72279617-72279636 | Msa0958360:intron | 25.0% |
!!! | TAAGAAAATAGGTTTTTCGA+AGG | - | chr6_3:72279886-72279905 | None:intergenic | 25.0% |
!!! | TTAAGAGACTGTATTTTAGA+AGG | - | chr6_3:72280101-72280120 | None:intergenic | 25.0% |
!!! | TCATTTGTTGTGTAATATAC+AGG | + | chr6_3:72280208-72280227 | Msa0958360:intron | 25.0% |
ATGAATATTGAGAATCGTCT+TGG | + | chr6_3:72278512-72278531 | Msa0958360:CDS | 30.0% | |
!! | TTGTGTTTTTGTGAGCTTAT+TGG | + | chr6_3:72278624-72278643 | Msa0958360:intron | 30.0% |
TGAGCTTATTGGCAATTATT+TGG | + | chr6_3:72278635-72278654 | Msa0958360:intron | 30.0% | |
! | TTTGTTGCAAATTGGTAGTT+AGG | + | chr6_3:72278696-72278715 | Msa0958360:intron | 30.0% |
TAGTTAGGATCTAATATGAG+AGG | + | chr6_3:72278711-72278730 | Msa0958360:intron | 30.0% | |
AGTTAGGATCTAATATGAGA+GGG | + | chr6_3:72278712-72278731 | Msa0958360:intron | 30.0% | |
CTATATAAAGCGGAATTCTT+AGG | + | chr6_3:72278846-72278865 | Msa0958360:intron | 30.0% | |
!!! | ATTCTTAGGTGTTTTAGAGT+AGG | + | chr6_3:72278860-72278879 | Msa0958360:intron | 30.0% |
! | ACGGAATAACTTTTCTGTTT+AGG | + | chr6_3:72278883-72278902 | Msa0958360:intron | 30.0% |
! | CGGAATAACTTTTCTGTTTA+GGG | + | chr6_3:72278884-72278903 | Msa0958360:intron | 30.0% |
GTTACTGTTAATTCGATTCT+AGG | + | chr6_3:72279062-72279081 | Msa0958360:intron | 30.0% | |
! | TCATTCACACAATTCTAGAA+AGG | - | chr6_3:72279339-72279358 | None:intergenic | 30.0% |
AATTGTGTGAATGAATACTG+AGG | + | chr6_3:72279345-72279364 | Msa0958360:intron | 30.0% | |
ATTGTGTGAATGAATACTGA+GGG | + | chr6_3:72279346-72279365 | Msa0958360:intron | 30.0% | |
ACAATAGATACGGTATAACA+AGG | - | chr6_3:72279399-72279418 | None:intergenic | 30.0% | |
!!! | CCATTTTTTGTTACACAGAA+TGG | - | chr6_3:72279424-72279443 | None:intergenic | 30.0% |
CCATTCTGTGTAACAAAAAA+TGG | + | chr6_3:72279421-72279440 | Msa0958360:intron | 30.0% | |
ATTTGTCACACCAAATTACA+GGG | + | chr6_3:72279465-72279484 | Msa0958360:intron | 30.0% | |
GTCGAAATTACATCAAAAGT+GGG | - | chr6_3:72279734-72279753 | None:intergenic | 30.0% | |
TGTCGAAATTACATCAAAAG+TGG | - | chr6_3:72279735-72279754 | None:intergenic | 30.0% | |
AAAAAGGTAGTGACTTATGA+AGG | - | chr6_3:72279761-72279780 | None:intergenic | 30.0% | |
AGGAAAAATGAAGTTGAACT+TGG | - | chr6_3:72279866-72279885 | None:intergenic | 30.0% | |
! | AAACAGATTGGTGTTCTATT+TGG | - | chr6_3:72279931-72279950 | None:intergenic | 30.0% |
GTTACTAGAGAAAAACAGAT+TGG | - | chr6_3:72279943-72279962 | None:intergenic | 30.0% | |
! | AGTCTCTTAATTTTGTTCAG+TGG | + | chr6_3:72280111-72280130 | Msa0958360:intron | 30.0% |
!!! | TTCAGTGGTTCTTATTTTTC+TGG | + | chr6_3:72280126-72280145 | Msa0958360:intron | 30.0% |
! | TTGAATTCTCCTTTTGAATG+TGG | + | chr6_3:72280342-72280361 | Msa0958360:three_prime_UTR | 30.0% |
AAAGGAAAACCACATTCAAA+AGG | - | chr6_3:72280354-72280373 | None:intergenic | 30.0% | |
ATGAATATTGAGAATCGTCT+TGG | + | chr6_3:72278512-72278531 | Msa0958360:CDS | 30.0% | |
!! | TTGTGTTTTTGTGAGCTTAT+TGG | + | chr6_3:72278624-72278643 | Msa0958360:intron | 30.0% |
TGAGCTTATTGGCAATTATT+TGG | + | chr6_3:72278635-72278654 | Msa0958360:intron | 30.0% | |
! | TTTGTTGCAAATTGGTAGTT+AGG | + | chr6_3:72278696-72278715 | Msa0958360:intron | 30.0% |
TAGTTAGGATCTAATATGAG+AGG | + | chr6_3:72278711-72278730 | Msa0958360:intron | 30.0% | |
AGTTAGGATCTAATATGAGA+GGG | + | chr6_3:72278712-72278731 | Msa0958360:intron | 30.0% | |
CTATATAAAGCGGAATTCTT+AGG | + | chr6_3:72278846-72278865 | Msa0958360:intron | 30.0% | |
!!! | ATTCTTAGGTGTTTTAGAGT+AGG | + | chr6_3:72278860-72278879 | Msa0958360:intron | 30.0% |
! | ACGGAATAACTTTTCTGTTT+AGG | + | chr6_3:72278883-72278902 | Msa0958360:intron | 30.0% |
! | CGGAATAACTTTTCTGTTTA+GGG | + | chr6_3:72278884-72278903 | Msa0958360:intron | 30.0% |
GTTACTGTTAATTCGATTCT+AGG | + | chr6_3:72279062-72279081 | Msa0958360:intron | 30.0% | |
! | TCATTCACACAATTCTAGAA+AGG | - | chr6_3:72279339-72279358 | None:intergenic | 30.0% |
AATTGTGTGAATGAATACTG+AGG | + | chr6_3:72279345-72279364 | Msa0958360:intron | 30.0% | |
ATTGTGTGAATGAATACTGA+GGG | + | chr6_3:72279346-72279365 | Msa0958360:intron | 30.0% | |
ACAATAGATACGGTATAACA+AGG | - | chr6_3:72279399-72279418 | None:intergenic | 30.0% | |
!!! | CCATTTTTTGTTACACAGAA+TGG | - | chr6_3:72279424-72279443 | None:intergenic | 30.0% |
CCATTCTGTGTAACAAAAAA+TGG | + | chr6_3:72279421-72279440 | Msa0958360:intron | 30.0% | |
ATTTGTCACACCAAATTACA+GGG | + | chr6_3:72279465-72279484 | Msa0958360:intron | 30.0% | |
GTCGAAATTACATCAAAAGT+GGG | - | chr6_3:72279734-72279753 | None:intergenic | 30.0% | |
TGTCGAAATTACATCAAAAG+TGG | - | chr6_3:72279735-72279754 | None:intergenic | 30.0% | |
AAAAAGGTAGTGACTTATGA+AGG | - | chr6_3:72279761-72279780 | None:intergenic | 30.0% | |
AGGAAAAATGAAGTTGAACT+TGG | - | chr6_3:72279866-72279885 | None:intergenic | 30.0% | |
! | AAACAGATTGGTGTTCTATT+TGG | - | chr6_3:72279931-72279950 | None:intergenic | 30.0% |
GTTACTAGAGAAAAACAGAT+TGG | - | chr6_3:72279943-72279962 | None:intergenic | 30.0% | |
! | AGTCTCTTAATTTTGTTCAG+TGG | + | chr6_3:72280111-72280130 | Msa0958360:intron | 30.0% |
!!! | TTCAGTGGTTCTTATTTTTC+TGG | + | chr6_3:72280126-72280145 | Msa0958360:intron | 30.0% |
! | TTGAATTCTCCTTTTGAATG+TGG | + | chr6_3:72280342-72280361 | Msa0958360:three_prime_UTR | 30.0% |
AAAGGAAAACCACATTCAAA+AGG | - | chr6_3:72280354-72280373 | None:intergenic | 30.0% | |
AAAACAACAACAGGAATCGT+AGG | + | chr6_3:72278329-72278348 | Msa0958360:CDS | 35.0% | |
TTAACACTTCTCTTGCGTTT+GGG | - | chr6_3:72278367-72278386 | None:intergenic | 35.0% | |
ATTAACACTTCTCTTGCGTT+TGG | - | chr6_3:72278368-72278387 | None:intergenic | 35.0% | |
AAAAAGGTTCCAGAAGACAA+AGG | + | chr6_3:72278419-72278438 | Msa0958360:CDS | 35.0% | |
AAAAGGTTCCAGAAGACAAA+GGG | + | chr6_3:72278420-72278439 | Msa0958360:CDS | 35.0% | |
ATATTGAGAATCGTCTTGGT+TGG | + | chr6_3:72278516-72278535 | Msa0958360:CDS | 35.0% | |
TATTGAGAATCGTCTTGGTT+GGG | + | chr6_3:72278517-72278536 | Msa0958360:CDS | 35.0% | |
GCTTATTGGCAATTATTTGG+AGG | + | chr6_3:72278638-72278657 | Msa0958360:intron | 35.0% | |
!! | GAGGGTGTTAAGTAATTAGT+AGG | + | chr6_3:72278730-72278749 | Msa0958360:intron | 35.0% |
!!! | TTAGGTGTTTTAGAGTAGGA+CGG | + | chr6_3:72278864-72278883 | Msa0958360:intron | 35.0% |
!! | TAATTCGATTCTAGGATCCA+TGG | + | chr6_3:72279070-72279089 | Msa0958360:intron | 35.0% |
!! | AATTCGATTCTAGGATCCAT+GGG | + | chr6_3:72279071-72279090 | Msa0958360:intron | 35.0% |
! | TTTTCAGCATCCCAAATGAT+AGG | - | chr6_3:72279099-72279118 | None:intergenic | 35.0% |
! | ATTTGGGATGCTGAAAAACT+GGG | + | chr6_3:72279102-72279121 | Msa0958360:intron | 35.0% |
! | TTTCTTTTGTATCATCGGGT+TGG | + | chr6_3:72279164-72279183 | Msa0958360:intron | 35.0% |
! | AACATAGAGCATTATGTACC+AGG | - | chr6_3:72279257-72279276 | None:intergenic | 35.0% |
CTCTATGTTGTTCATTCATG+TGG | + | chr6_3:72279268-72279287 | Msa0958360:intron | 35.0% | |
TTCATGTGGTGTGATGAATT+TGG | + | chr6_3:72279282-72279301 | Msa0958360:intron | 35.0% | |
TCATGTGGTGTGATGAATTT+GGG | + | chr6_3:72279283-72279302 | Msa0958360:intron | 35.0% | |
CAGAATGGACACAATAGATA+CGG | - | chr6_3:72279409-72279428 | None:intergenic | 35.0% | |
GATTTGTCACACCAAATTAC+AGG | + | chr6_3:72279464-72279483 | Msa0958360:intron | 35.0% | |
CTGTAATCTTCCCTGTAATT+TGG | - | chr6_3:72279478-72279497 | None:intergenic | 35.0% | |
!! | TGTGGGTTTTATAGTCTTGA+TGG | - | chr6_3:72279802-72279821 | None:intergenic | 35.0% |
AGTTGAACTTGGCGATTAAT+TGG | - | chr6_3:72279855-72279874 | None:intergenic | 35.0% | |
! | GTTCTAGGCTGTAAGAAAAT+AGG | - | chr6_3:72279897-72279916 | None:intergenic | 35.0% |
GTTCTATTTGGATACAGTTG+TGG | - | chr6_3:72279919-72279938 | None:intergenic | 35.0% | |
GAACAGAAATGTTGACAAAG+AGG | - | chr6_3:72280016-72280035 | None:intergenic | 35.0% | |
CAGATAACGACAGACAAATA+GGG | - | chr6_3:72280065-72280084 | None:intergenic | 35.0% | |
TCAGATAACGACAGACAAAT+AGG | - | chr6_3:72280066-72280085 | None:intergenic | 35.0% | |
GTCGTTATCTGATATTATCG+AGG | + | chr6_3:72280074-72280093 | Msa0958360:intron | 35.0% | |
!!! | GTGGTTCTTATTTTTCTGGT+TGG | + | chr6_3:72280130-72280149 | Msa0958360:intron | 35.0% |
GTAATATACAGGTTTGTCGA+TGG | + | chr6_3:72280219-72280238 | Msa0958360:intron | 35.0% | |
!!! | GCTTTTTGGGTTCTTCATTA+GGG | - | chr6_3:72280297-72280316 | None:intergenic | 35.0% |
TCTAATATAGCTGACGTTCA+TGG | - | chr6_3:72280319-72280338 | None:intergenic | 35.0% | |
TTCAGATTCAACAGTCTTTC+AGG | + | chr6_3:72280409-72280428 | Msa0958360:three_prime_UTR | 35.0% | |
TCAGATTCAACAGTCTTTCA+GGG | + | chr6_3:72280410-72280429 | Msa0958360:three_prime_UTR | 35.0% | |
!!! | TTCAAGTTGTTTTGGAGCAA+AGG | - | chr6_3:72280442-72280461 | None:intergenic | 35.0% |
!!! | TCAACCAGTTCAAGTTGTTT+TGG | - | chr6_3:72280450-72280469 | None:intergenic | 35.0% |
AAAACAACAACAGGAATCGT+AGG | + | chr6_3:72278329-72278348 | Msa0958360:CDS | 35.0% | |
TTAACACTTCTCTTGCGTTT+GGG | - | chr6_3:72278367-72278386 | None:intergenic | 35.0% | |
ATTAACACTTCTCTTGCGTT+TGG | - | chr6_3:72278368-72278387 | None:intergenic | 35.0% | |
AAAAAGGTTCCAGAAGACAA+AGG | + | chr6_3:72278419-72278438 | Msa0958360:CDS | 35.0% | |
AAAAGGTTCCAGAAGACAAA+GGG | + | chr6_3:72278420-72278439 | Msa0958360:CDS | 35.0% | |
ATATTGAGAATCGTCTTGGT+TGG | + | chr6_3:72278516-72278535 | Msa0958360:CDS | 35.0% | |
TATTGAGAATCGTCTTGGTT+GGG | + | chr6_3:72278517-72278536 | Msa0958360:CDS | 35.0% | |
GCTTATTGGCAATTATTTGG+AGG | + | chr6_3:72278638-72278657 | Msa0958360:intron | 35.0% | |
!! | GAGGGTGTTAAGTAATTAGT+AGG | + | chr6_3:72278730-72278749 | Msa0958360:intron | 35.0% |
!!! | TTAGGTGTTTTAGAGTAGGA+CGG | + | chr6_3:72278864-72278883 | Msa0958360:intron | 35.0% |
!! | TAATTCGATTCTAGGATCCA+TGG | + | chr6_3:72279070-72279089 | Msa0958360:intron | 35.0% |
!! | AATTCGATTCTAGGATCCAT+GGG | + | chr6_3:72279071-72279090 | Msa0958360:intron | 35.0% |
! | TTTTCAGCATCCCAAATGAT+AGG | - | chr6_3:72279099-72279118 | None:intergenic | 35.0% |
! | ATTTGGGATGCTGAAAAACT+GGG | + | chr6_3:72279102-72279121 | Msa0958360:intron | 35.0% |
! | TTTCTTTTGTATCATCGGGT+TGG | + | chr6_3:72279164-72279183 | Msa0958360:intron | 35.0% |
! | AACATAGAGCATTATGTACC+AGG | - | chr6_3:72279257-72279276 | None:intergenic | 35.0% |
CTCTATGTTGTTCATTCATG+TGG | + | chr6_3:72279268-72279287 | Msa0958360:intron | 35.0% | |
TTCATGTGGTGTGATGAATT+TGG | + | chr6_3:72279282-72279301 | Msa0958360:intron | 35.0% | |
TCATGTGGTGTGATGAATTT+GGG | + | chr6_3:72279283-72279302 | Msa0958360:intron | 35.0% | |
CAGAATGGACACAATAGATA+CGG | - | chr6_3:72279409-72279428 | None:intergenic | 35.0% | |
GATTTGTCACACCAAATTAC+AGG | + | chr6_3:72279464-72279483 | Msa0958360:intron | 35.0% | |
CTGTAATCTTCCCTGTAATT+TGG | - | chr6_3:72279478-72279497 | None:intergenic | 35.0% | |
!! | TGTGGGTTTTATAGTCTTGA+TGG | - | chr6_3:72279802-72279821 | None:intergenic | 35.0% |
AGTTGAACTTGGCGATTAAT+TGG | - | chr6_3:72279855-72279874 | None:intergenic | 35.0% | |
! | GTTCTAGGCTGTAAGAAAAT+AGG | - | chr6_3:72279897-72279916 | None:intergenic | 35.0% |
GTTCTATTTGGATACAGTTG+TGG | - | chr6_3:72279919-72279938 | None:intergenic | 35.0% | |
GAACAGAAATGTTGACAAAG+AGG | - | chr6_3:72280016-72280035 | None:intergenic | 35.0% | |
CAGATAACGACAGACAAATA+GGG | - | chr6_3:72280065-72280084 | None:intergenic | 35.0% | |
TCAGATAACGACAGACAAAT+AGG | - | chr6_3:72280066-72280085 | None:intergenic | 35.0% | |
GTCGTTATCTGATATTATCG+AGG | + | chr6_3:72280074-72280093 | Msa0958360:intron | 35.0% | |
!!! | GTGGTTCTTATTTTTCTGGT+TGG | + | chr6_3:72280130-72280149 | Msa0958360:intron | 35.0% |
GTAATATACAGGTTTGTCGA+TGG | + | chr6_3:72280219-72280238 | Msa0958360:intron | 35.0% | |
!!! | GCTTTTTGGGTTCTTCATTA+GGG | - | chr6_3:72280297-72280316 | None:intergenic | 35.0% |
TCTAATATAGCTGACGTTCA+TGG | - | chr6_3:72280319-72280338 | None:intergenic | 35.0% | |
TTCAGATTCAACAGTCTTTC+AGG | + | chr6_3:72280409-72280428 | Msa0958360:three_prime_UTR | 35.0% | |
TCAGATTCAACAGTCTTTCA+GGG | + | chr6_3:72280410-72280429 | Msa0958360:three_prime_UTR | 35.0% | |
!!! | TTCAAGTTGTTTTGGAGCAA+AGG | - | chr6_3:72280442-72280461 | None:intergenic | 35.0% |
!!! | TCAACCAGTTCAAGTTGTTT+TGG | - | chr6_3:72280450-72280469 | None:intergenic | 35.0% |
CGTCTAGTGTCTTACTATAG+AGG | - | chr6_3:72278394-72278413 | None:intergenic | 40.0% | |
GACACTAGACGAGATCAAAA+AGG | + | chr6_3:72278403-72278422 | Msa0958360:CDS | 40.0% | |
TTACGATACCCTTTGTCTTC+TGG | - | chr6_3:72278431-72278450 | None:intergenic | 40.0% | |
ATTGAGAATCGTCTTGGTTG+GGG | + | chr6_3:72278518-72278537 | Msa0958360:CDS | 40.0% | |
! | TTTCTGTTTAGGGTCAGAGT+AGG | + | chr6_3:72278894-72278913 | Msa0958360:intron | 40.0% |
!! | GATTCCTCTTTGAGTTGTGT+CGG | + | chr6_3:72278916-72278935 | Msa0958360:intron | 40.0% |
GGTGCCTTTATTCATACGAA+TGG | - | chr6_3:72278993-72279012 | None:intergenic | 40.0% | |
ATCCATGGGTTCCTATCATT+TGG | + | chr6_3:72279085-72279104 | Msa0958360:intron | 40.0% | |
TCCATGGGTTCCTATCATTT+GGG | + | chr6_3:72279086-72279105 | Msa0958360:intron | 40.0% | |
! | CATTTGGGATGCTGAAAAAC+TGG | + | chr6_3:72279101-72279120 | Msa0958360:intron | 40.0% |
! | TTTGGGATGCTGAAAAACTG+GGG | + | chr6_3:72279103-72279122 | Msa0958360:intron | 40.0% |
GAATGAATACTGAGGGAAAC+TGG | + | chr6_3:72279353-72279372 | Msa0958360:intron | 40.0% | |
TGTCAGATACCAACACATGT+CGG | - | chr6_3:72279592-72279611 | None:intergenic | 40.0% | |
TGGTATCTGACATCAACATG+TGG | + | chr6_3:72279600-72279619 | Msa0958360:intron | 40.0% | |
TTGGATACAGTTGTGGTTCT+AGG | - | chr6_3:72279912-72279931 | None:intergenic | 40.0% | |
TCACTAGTCGTCATAACACA+AGG | - | chr6_3:72280167-72280186 | None:intergenic | 40.0% | |
GGCAAAGATAGAAGAACTTG+TGG | + | chr6_3:72280240-72280259 | Msa0958360:CDS | 40.0% | |
GTGGCTGAAACAAGAAAAGA+TGG | + | chr6_3:72280259-72280278 | Msa0958360:CDS | 40.0% | |
!!! | GGCTTTTTGGGTTCTTCATT+AGG | - | chr6_3:72280298-72280317 | None:intergenic | 40.0% |
!!! | GTTGTTTTGGAGCAAAGGAT+TGG | - | chr6_3:72280437-72280456 | None:intergenic | 40.0% |
TGCTCCAAAACAACTTGAAC+TGG | + | chr6_3:72280443-72280462 | Msa0958360:three_prime_UTR | 40.0% | |
CGTCTAGTGTCTTACTATAG+AGG | - | chr6_3:72278394-72278413 | None:intergenic | 40.0% | |
GACACTAGACGAGATCAAAA+AGG | + | chr6_3:72278403-72278422 | Msa0958360:CDS | 40.0% | |
TTACGATACCCTTTGTCTTC+TGG | - | chr6_3:72278431-72278450 | None:intergenic | 40.0% | |
ATTGAGAATCGTCTTGGTTG+GGG | + | chr6_3:72278518-72278537 | Msa0958360:CDS | 40.0% | |
! | TTTCTGTTTAGGGTCAGAGT+AGG | + | chr6_3:72278894-72278913 | Msa0958360:intron | 40.0% |
!! | GATTCCTCTTTGAGTTGTGT+CGG | + | chr6_3:72278916-72278935 | Msa0958360:intron | 40.0% |
GGTGCCTTTATTCATACGAA+TGG | - | chr6_3:72278993-72279012 | None:intergenic | 40.0% | |
ATCCATGGGTTCCTATCATT+TGG | + | chr6_3:72279085-72279104 | Msa0958360:intron | 40.0% | |
TCCATGGGTTCCTATCATTT+GGG | + | chr6_3:72279086-72279105 | Msa0958360:intron | 40.0% | |
! | CATTTGGGATGCTGAAAAAC+TGG | + | chr6_3:72279101-72279120 | Msa0958360:intron | 40.0% |
! | TTTGGGATGCTGAAAAACTG+GGG | + | chr6_3:72279103-72279122 | Msa0958360:intron | 40.0% |
GAATGAATACTGAGGGAAAC+TGG | + | chr6_3:72279353-72279372 | Msa0958360:intron | 40.0% | |
TGTCAGATACCAACACATGT+CGG | - | chr6_3:72279592-72279611 | None:intergenic | 40.0% | |
TGGTATCTGACATCAACATG+TGG | + | chr6_3:72279600-72279619 | Msa0958360:intron | 40.0% | |
TTGGATACAGTTGTGGTTCT+AGG | - | chr6_3:72279912-72279931 | None:intergenic | 40.0% | |
TCACTAGTCGTCATAACACA+AGG | - | chr6_3:72280167-72280186 | None:intergenic | 40.0% | |
GGCAAAGATAGAAGAACTTG+TGG | + | chr6_3:72280240-72280259 | Msa0958360:CDS | 40.0% | |
GTGGCTGAAACAAGAAAAGA+TGG | + | chr6_3:72280259-72280278 | Msa0958360:CDS | 40.0% | |
!!! | GGCTTTTTGGGTTCTTCATT+AGG | - | chr6_3:72280298-72280317 | None:intergenic | 40.0% |
!!! | GTTGTTTTGGAGCAAAGGAT+TGG | - | chr6_3:72280437-72280456 | None:intergenic | 40.0% |
TGCTCCAAAACAACTTGAAC+TGG | + | chr6_3:72280443-72280462 | Msa0958360:three_prime_UTR | 40.0% | |
GTTGAAAGCTTTACGCGTCT+TGG | + | chr6_3:72278458-72278477 | Msa0958360:CDS | 45.0% | |
CTTTACGCGTCTTGGACTTA+AGG | + | chr6_3:72278466-72278485 | Msa0958360:CDS | 45.0% | |
TCCCAAATGATAGGAACCCA+TGG | - | chr6_3:72279090-72279109 | None:intergenic | 45.0% | |
TCTAAGTGTCCGACATGTGT+TGG | + | chr6_3:72279580-72279599 | Msa0958360:intron | 45.0% | |
AAAGTGGGCACAACTTGTGT+CGG | - | chr6_3:72279719-72279738 | None:intergenic | 45.0% | |
TAGGGAGACTTGGAACAAAG+AGG | - | chr6_3:72280047-72280066 | None:intergenic | 45.0% | |
GACAGACAAATAGGGAGACT+TGG | - | chr6_3:72280057-72280076 | None:intergenic | 45.0% | |
!! | ACAAGAAAAGATGGTGCTGC+TGG | + | chr6_3:72280268-72280287 | Msa0958360:CDS | 45.0% |
! | GCTGACGTTCATGGCTTTTT+GGG | - | chr6_3:72280310-72280329 | None:intergenic | 45.0% |
! | AGCTGACGTTCATGGCTTTT+TGG | - | chr6_3:72280311-72280330 | None:intergenic | 45.0% |
GTTGAAAGCTTTACGCGTCT+TGG | + | chr6_3:72278458-72278477 | Msa0958360:CDS | 45.0% | |
CTTTACGCGTCTTGGACTTA+AGG | + | chr6_3:72278466-72278485 | Msa0958360:CDS | 45.0% | |
TCCCAAATGATAGGAACCCA+TGG | - | chr6_3:72279090-72279109 | None:intergenic | 45.0% | |
TCTAAGTGTCCGACATGTGT+TGG | + | chr6_3:72279580-72279599 | Msa0958360:intron | 45.0% | |
AAAGTGGGCACAACTTGTGT+CGG | - | chr6_3:72279719-72279738 | None:intergenic | 45.0% | |
TAGGGAGACTTGGAACAAAG+AGG | - | chr6_3:72280047-72280066 | None:intergenic | 45.0% | |
GACAGACAAATAGGGAGACT+TGG | - | chr6_3:72280057-72280076 | None:intergenic | 45.0% | |
!! | ACAAGAAAAGATGGTGCTGC+TGG | + | chr6_3:72280268-72280287 | Msa0958360:CDS | 45.0% |
! | GCTGACGTTCATGGCTTTTT+GGG | - | chr6_3:72280310-72280329 | None:intergenic | 45.0% |
! | AGCTGACGTTCATGGCTTTT+TGG | - | chr6_3:72280311-72280330 | None:intergenic | 45.0% |
GAAGATGTTTCTCCGAGCGA+CGG | + | chr6_3:72278283-72278302 | Msa0958360:exon | 50.0% | |
AGCTCCGACACAACTCAAAG+AGG | - | chr6_3:72278923-72278942 | None:intergenic | 50.0% | |
TTGTGTCGGAGCTTTGCTCT+GGG | + | chr6_3:72278930-72278949 | Msa0958360:intron | 50.0% | |
AAGTGGGCACAACTTGTGTC+GGG | - | chr6_3:72279718-72279737 | None:intergenic | 50.0% | |
GAAGATGTTTCTCCGAGCGA+CGG | + | chr6_3:72278283-72278302 | Msa0958360:exon | 50.0% | |
AGCTCCGACACAACTCAAAG+AGG | - | chr6_3:72278923-72278942 | None:intergenic | 50.0% | |
TTGTGTCGGAGCTTTGCTCT+GGG | + | chr6_3:72278930-72278949 | Msa0958360:intron | 50.0% | |
AAGTGGGCACAACTTGTGTC+GGG | - | chr6_3:72279718-72279737 | None:intergenic | 50.0% | |
GAATCGTCTTGGTTGGGGTC+AGG | + | chr6_3:72278523-72278542 | Msa0958360:CDS | 55.0% | |
GTTGTGTCGGAGCTTTGCTC+TGG | + | chr6_3:72278929-72278948 | Msa0958360:intron | 55.0% | |
AACTTGTGTCGGGGACTCGA+GGG | - | chr6_3:72279708-72279727 | None:intergenic | 55.0% | |
AGTGGGCACAACTTGTGTCG+GGG | - | chr6_3:72279717-72279736 | None:intergenic | 55.0% | |
GAATCGTCTTGGTTGGGGTC+AGG | + | chr6_3:72278523-72278542 | Msa0958360:CDS | 55.0% | |
GTTGTGTCGGAGCTTTGCTC+TGG | + | chr6_3:72278929-72278948 | Msa0958360:intron | 55.0% | |
AACTTGTGTCGGGGACTCGA+GGG | - | chr6_3:72279708-72279727 | None:intergenic | 55.0% | |
AGTGGGCACAACTTGTGTCG+GGG | - | chr6_3:72279717-72279736 | None:intergenic | 55.0% | |
!! | GGGGACTCGAGGGTATCTAG+GGG | - | chr6_3:72279698-72279717 | None:intergenic | 60.0% |
!! | CGGGGACTCGAGGGTATCTA+GGG | - | chr6_3:72279699-72279718 | None:intergenic | 60.0% |
!! | TCGGGGACTCGAGGGTATCT+AGG | - | chr6_3:72279700-72279719 | None:intergenic | 60.0% |
CAACTTGTGTCGGGGACTCG+AGG | - | chr6_3:72279709-72279728 | None:intergenic | 60.0% | |
!! | GGGGACTCGAGGGTATCTAG+GGG | - | chr6_3:72279698-72279717 | None:intergenic | 60.0% |
!! | CGGGGACTCGAGGGTATCTA+GGG | - | chr6_3:72279699-72279718 | None:intergenic | 60.0% |
!! | TCGGGGACTCGAGGGTATCT+AGG | - | chr6_3:72279700-72279719 | None:intergenic | 60.0% |
CAACTTGTGTCGGGGACTCG+AGG | - | chr6_3:72279709-72279728 | None:intergenic | 60.0% | |
TGTTTCTCCGAGCGACGGCG+CGG | + | chr6_3:72278288-72278307 | Msa0958360:CDS | 65.0% | |
TGTTTCTCCGAGCGACGGCG+CGG | + | chr6_3:72278288-72278307 | Msa0958360:CDS | 65.0% | |
TCAATGGCCGCGCCGTCGCT+CGG | - | chr6_3:72278298-72278317 | None:intergenic | 70.0% | |
TCAATGGCCGCGCCGTCGCT+CGG | - | chr6_3:72278298-72278317 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_3 | gene | 72278265 | 72280500 | 72278265 | ID=Msa0958360;Name=Msa0958360 |
chr6_3 | mRNA | 72278265 | 72280500 | 72278265 | ID=Msa0958360-mRNA-1;Parent=Msa0958360;Name=Msa0958360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=22|1|1|1|1|1|2|179|135 |
chr6_3 | exon | 72278265 | 72278602 | 72278265 | ID=Msa0958360-mRNA-1:exon:13115;Parent=Msa0958360-mRNA-1 |
chr6_3 | exon | 72280230 | 72280500 | 72280230 | ID=Msa0958360-mRNA-1:exon:13116;Parent=Msa0958360-mRNA-1 |
chr6_3 | five_prime_UTR | 72278265 | 72278286 | 72278265 | ID=Msa0958360-mRNA-1:five_prime_utr;Parent=Msa0958360-mRNA-1 |
chr6_3 | CDS | 72278287 | 72278602 | 72278287 | ID=Msa0958360-mRNA-1:cds;Parent=Msa0958360-mRNA-1 |
chr6_3 | CDS | 72280230 | 72280321 | 72280230 | ID=Msa0958360-mRNA-1:cds;Parent=Msa0958360-mRNA-1 |
chr6_3 | three_prime_UTR | 72280322 | 72280500 | 72280322 | ID=Msa0958360-mRNA-1:three_prime_utr;Parent=Msa0958360-mRNA-1 |
Gene Sequence |
Protein sequence |