AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0808080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0808080 MtrunA17_Chr5g0422991 70.000 120 6 1 1 90 1 120 3.71e-49 151
Msa0808080 MtrunA17_Chr1g0210031 64.865 74 22 2 18 88 48 120 1.02e-24 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 26 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGATAATAAGGTGATTT+TGG 0.110746 5_3:+31814292 None:intergenic
TTATTATCAAGGAAATTATT+TGG 0.211652 5_3:-31814281 Msa0808080:three_prime_UTR
AAATAATTTCCTTGATAATA+AGG 0.225833 5_3:+31814283 None:intergenic
TAATGTCAATAACCCTCTTT+TGG 0.320029 5_3:+31818641 None:intergenic
GGAAATTATTTGGCGATATC+CGG 0.373714 5_3:-31814271 Msa0808080:three_prime_UTR
CCAAAATCACCTTATTATCA+AGG 0.376723 5_3:-31814292 Msa0808080:three_prime_UTR
GGCAAATTATTCCCATCAAC+AGG 0.420406 5_3:-31814591 Msa0808080:CDS
AGGCAGAGGATTCCTGTTGA+TGG 0.425176 5_3:+31814579 None:intergenic
CGTTTGGTAATTGCAACTTT+AGG 0.425973 5_3:+31814559 None:intergenic
TTCCAACACATTCACTTCCA+TGG 0.444080 5_3:+31814666 None:intergenic
GAAAGATTGAAATAAACGTT+TGG 0.454568 5_3:+31814543 None:intergenic
GGCAGAGGATTCCTGTTGAT+GGG 0.484186 5_3:+31814580 None:intergenic
TGCAGTAGAGACAGAGTCCA+TGG 0.490511 5_3:-31814683 Msa0808080:intron
AAGGATCTGTATGTTTAGAA+AGG 0.501363 5_3:-31814499 Msa0808080:three_prime_UTR
TTGTAAGTCGTAGCTAATCA+AGG 0.519971 5_3:+31814521 None:intergenic
GTAATTGCAACTTTAGGCAG+AGG 0.520078 5_3:+31814565 None:intergenic
GTGATTCCTTTAGCCACAGT+TGG 0.523574 5_3:+31814616 None:intergenic
ATATTACCAACTGTGGCTAA+AGG 0.527091 5_3:-31814622 Msa0808080:CDS
TACATTCATATTACCAACTG+TGG 0.568778 5_3:-31814629 Msa0808080:CDS
AAAATAAATAAATAAAGCAA+TGG 0.583234 5_3:-31814399 Msa0808080:three_prime_UTR
CTGTGGCTAAAGGAATCACT+AGG 0.600468 5_3:-31814612 Msa0808080:CDS
GTGTGAGAAGTGCCAAAAGA+GGG 0.612120 5_3:-31818653 Msa0808080:CDS
AGTGTGAGAAGTGCCAAAAG+AGG 0.617748 5_3:-31818654 Msa0808080:CDS
TGATTAGCTACGACTTACAA+AGG 0.621450 5_3:-31814518 Msa0808080:exon
CCTAAGGCTATGCTACATGC+CGG 0.624972 5_3:+31814252 None:intergenic
GTCCATGGAAGTGAATGTGT+TGG 0.627475 5_3:-31814668 Msa0808080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTATTTATATTTAT+TGG - chr5_3:31817888-31817907 Msa0808080:intron 0.0%
!!! TGTAGTTTTTAAAAAAATTA+CGG + chr5_3:31815511-31815530 None:intergenic 10.0%
!! CAATGATTTAAATTAAATAT+AGG + chr5_3:31815975-31815994 None:intergenic 10.0%
!! AAATAAGAATAAGAAATAAA+AGG + chr5_3:31816446-31816465 None:intergenic 10.0%
!!! GTGTTTTTTTTTTTATAATA+TGG + chr5_3:31817297-31817316 None:intergenic 10.0%
!!! ATTTTTTTTGCTTATAATTT+AGG - chr5_3:31817842-31817861 Msa0808080:intron 10.0%
!!! AAATGTGATTTTTTTAATAA+GGG + chr5_3:31817994-31818013 None:intergenic 10.0%
!!! AAAATGTGATTTTTTTTAAT+AGG - chr5_3:31818217-31818236 Msa0808080:intron 10.0%
!!! AAATGTGATTTTTTTTAATA+GGG - chr5_3:31818218-31818237 Msa0808080:intron 10.0%
!!! TGTACATAAATAATTTTTTT+AGG - chr5_3:31818824-31818843 Msa0808080:intron 10.0%
!! AAAATAAATAAATAAAGCAA+TGG - chr5_3:31818878-31818897 Msa0808080:intron 10.0%
!!! AAAAATATTTTTTTTAGTCT+AGG - chr5_3:31818930-31818949 Msa0808080:intron 10.0%
!!! TTTGTATTTTCACTTTATTT+TGG - chr5_3:31814379-31814398 Msa0808080:three_prime_UTR 15.0%
!!! TTGTATTTTCACTTTATTTT+GGG - chr5_3:31814380-31814399 Msa0808080:three_prime_UTR 15.0%
!!! AACAATAGTTTTACAAATTT+AGG - chr5_3:31814755-31814774 Msa0808080:intron 15.0%
!!! ACAATAGTTTTACAAATTTA+GGG - chr5_3:31814756-31814775 Msa0808080:intron 15.0%
!!! TAAGAAAAAATTCCTTTTTT+AGG + chr5_3:31815811-31815830 None:intergenic 15.0%
!!! ATATGTTATGTTTGATTTTT+TGG - chr5_3:31815911-31815930 Msa0808080:intron 15.0%
!!! TATGTTATGTTTGATTTTTT+GGG - chr5_3:31815912-31815931 Msa0808080:intron 15.0%
!! AAAAATTATTCAAAGTAAAG+AGG + chr5_3:31816031-31816050 None:intergenic 15.0%
!! TGTGAATTTAATGATAAATA+AGG + chr5_3:31817442-31817461 None:intergenic 15.0%
!!! ATCTTTGAAATAAGTTTTAT+AGG - chr5_3:31817644-31817663 Msa0808080:intron 15.0%
!!! TTTTGCATTTAATTTTTCTT+TGG - chr5_3:31817736-31817755 Msa0808080:intron 15.0%
!!! GAAATGTGATTTTTTTAATA+AGG + chr5_3:31817995-31818014 None:intergenic 15.0%
!!! AATGTGATTTTTTTTAATAG+GGG - chr5_3:31818219-31818238 Msa0808080:intron 15.0%
!!! AAATAATTTCCTTGATAATA+AGG + chr5_3:31818997-31819016 None:intergenic 15.0%
!! TTATTATCAAGGAAATTATT+TGG - chr5_3:31818996-31819015 Msa0808080:CDS 15.0%
!! AATTGCTATAAAAAGTTCAA+AGG - chr5_3:31814299-31814318 Msa0808080:three_prime_UTR 20.0%
!! GACATTATTACAAAAATGAA+TGG - chr5_3:31814652-31814671 Msa0808080:CDS 20.0%
!! CTCAAAGAAAAATCTTAAAA+AGG + chr5_3:31814787-31814806 None:intergenic 20.0%
!!! TTTTAAGATTTTTCTTTGAG+AGG - chr5_3:31814787-31814806 Msa0808080:intron 20.0%
!! TCAACAAACTAATTTACTAA+TGG + chr5_3:31814968-31814987 None:intergenic 20.0%
!!! ATTAGTAAATTAGTTTGTTG+AGG - chr5_3:31814967-31814986 Msa0808080:intron 20.0%
!!! AGAGATTTGATGTTTTATAT+AGG + chr5_3:31815236-31815255 None:intergenic 20.0%
!! ATAAAACATCAAATCTCTAT+TGG - chr5_3:31815238-31815257 Msa0808080:intron 20.0%
!! TAAACCAATTGATCTTAAAT+AGG + chr5_3:31815320-31815339 None:intergenic 20.0%
!! AATTGTATCAATGCAAATTA+AGG + chr5_3:31815400-31815419 None:intergenic 20.0%
!! TTATCGTATAAATCTATGTT+TGG - chr5_3:31815450-31815469 Msa0808080:intron 20.0%
!!! CTACATTTAGTAGTTTTTTT+TGG - chr5_3:31815526-31815545 Msa0808080:intron 20.0%
!! TTATTCAATGAACCTAAAAA+AGG - chr5_3:31815796-31815815 Msa0808080:intron 20.0%
!!! TTTTTTCTTATATTTGAGAC+CGG - chr5_3:31815821-31815840 Msa0808080:intron 20.0%
!!! TAATTTTTTCAAAAAGTGAG+AGG - chr5_3:31816043-31816062 Msa0808080:intron 20.0%
!! TAAGAATAAGAAATAAAAGG+TGG + chr5_3:31816443-31816462 None:intergenic 20.0%
!! ACAACTACTTTAATAGTTTA+TGG - chr5_3:31817480-31817499 Msa0808080:intron 20.0%
!!! GATGTAAAAACAATTTTCAT+TGG - chr5_3:31817669-31817688 Msa0808080:intron 20.0%
!!! TTTTTGCTTATAATTTAGGA+TGG - chr5_3:31817846-31817865 Msa0808080:intron 20.0%
!! TCATTCAAATAAAAACTAGT+GGG + chr5_3:31818155-31818174 None:intergenic 20.0%
!! ATCATTCAAATAAAAACTAG+TGG + chr5_3:31818156-31818175 None:intergenic 20.0%
!!! TAGTAGACTCTTTAAAAAAA+AGG + chr5_3:31818297-31818316 None:intergenic 20.0%
!!! TATACGATTTTTTAATACGT+AGG + chr5_3:31818377-31818396 None:intergenic 20.0%
!! ACAAATCATATGATAAAACA+CGG + chr5_3:31818406-31818425 None:intergenic 20.0%
! AAAGTGAAAATACAAACCTT+TGG + chr5_3:31814375-31814394 None:intergenic 25.0%
!!! TTTGGGTTTTGATTTATGTT+TGG - chr5_3:31814397-31814416 Msa0808080:three_prime_UTR 25.0%
!!! TTGGGTTTTGATTTATGTTT+GGG - chr5_3:31814398-31814417 Msa0808080:three_prime_UTR 25.0%
! CATATGACCAAATTTATGTT+TGG + chr5_3:31814521-31814540 None:intergenic 25.0%
! CTGTCAAAAAAATCTTAGAA+AGG + chr5_3:31814730-31814749 None:intergenic 25.0%
!!! CTTTCTAAGATTTTTTTGAC+AGG - chr5_3:31814728-31814747 Msa0808080:intron 25.0%
! TTATAATATGTTTCACCCTA+AGG + chr5_3:31814897-31814916 None:intergenic 25.0%
! TTAGGGTGAAACATATTATA+AGG - chr5_3:31814896-31814915 Msa0808080:intron 25.0%
! GTTCAAATCATGTAACAATT+TGG + chr5_3:31815000-31815019 None:intergenic 25.0%
!!! CTTTTCTAGGAATTTTAACT+TGG + chr5_3:31815057-31815076 None:intergenic 25.0%
!! GTTTTATATAGGAATGAGAT+TGG + chr5_3:31815225-31815244 None:intergenic 25.0%
! CGATATTTAGTTACTATAAG+TGG + chr5_3:31815278-31815297 None:intergenic 25.0%
! ATCTATGTTTGGTATTATAG+TGG - chr5_3:31815461-31815480 Msa0808080:intron 25.0%
! GATATGCATTATTATATGCA+GGG + chr5_3:31815643-31815662 None:intergenic 25.0%
!!! TCTTTTCTTATATTTGAGAC+CGG + chr5_3:31815712-31815731 None:intergenic 25.0%
! CTACTCAATGAACTTAAAAA+AGG + chr5_3:31815737-31815756 None:intergenic 25.0%
! TAGCTTCTATAAAATTACAG+TGG - chr5_3:31815850-31815869 Msa0808080:intron 25.0%
! AGCTTCTATAAAATTACAGT+GGG - chr5_3:31815851-31815870 Msa0808080:intron 25.0%
! CTAAGAATAGAAAATTCCAA+AGG + chr5_3:31816139-31816158 None:intergenic 25.0%
! AAATTCTTGACCATTTACAA+TGG - chr5_3:31816283-31816302 Msa0808080:intron 25.0%
! GTTGAATGAAAAAAAACCAT+TGG + chr5_3:31816409-31816428 None:intergenic 25.0%
! AATAAGAAATAAAAGGTGGT+GGG + chr5_3:31816439-31816458 None:intergenic 25.0%
! ATCAAAAGAAAAAGAATGGA+GGG + chr5_3:31817346-31817365 None:intergenic 25.0%
! AACCATCAAAAGAAAAAGAA+TGG + chr5_3:31817350-31817369 None:intergenic 25.0%
!! CACTAAAACATCAAAAGTTT+TGG - chr5_3:31817545-31817564 Msa0808080:intron 25.0%
!!! CTCTAAAACATCAAAAGAAA+AGG - chr5_3:31817581-31817600 Msa0808080:intron 25.0%
! AAACATCAAAAGAAAAGGAA+TGG - chr5_3:31817586-31817605 Msa0808080:intron 25.0%
!!! TGTCGTTTTTGCTTATAATT+TGG - chr5_3:31817805-31817824 Msa0808080:intron 25.0%
!!! GTCGTTTTTGCTTATAATTT+GGG - chr5_3:31817806-31817825 Msa0808080:intron 25.0%
! AACAAACAAAAATGCAAACT+CGG + chr5_3:31817914-31817933 None:intergenic 25.0%
! TCAAAATTGAAAGTTGCAAA+AGG + chr5_3:31818175-31818194 None:intergenic 25.0%
!!! GAGCAAGTTTTAGATTTATA+GGG + chr5_3:31818123-31818142 None:intergenic 25.0%
!!! TGAGCAAGTTTTAGATTTAT+AGG + chr5_3:31818124-31818143 None:intergenic 25.0%
! ATTCAAATAAAAACTAGTGG+GGG + chr5_3:31818153-31818172 None:intergenic 25.0%
! CATTCAAATAAAAACTAGTG+GGG + chr5_3:31818154-31818173 None:intergenic 25.0%
! ATAAATCATCTGTAGATAAG+TGG - chr5_3:31818334-31818353 Msa0808080:intron 25.0%
! TGCTTATTTGTCACAATAAT+AGG - chr5_3:31818460-31818479 Msa0808080:intron 25.0%
! TTATTTGTCACAATAATAGG+AGG - chr5_3:31818463-31818482 Msa0808080:intron 25.0%
! GAAAGATTGAAATAAACGTT+TGG + chr5_3:31818737-31818756 None:intergenic 25.0%
!!! TTTTTTAGTCTAGGAATCTA+AGG - chr5_3:31818939-31818958 Msa0808080:intron 25.0%
!!! GATTTTGGAAATAACAATTG+AGG + chr5_3:31818973-31818992 None:intergenic 25.0%
! TCAAAGGATTTTCCTCTATT+TGG - chr5_3:31814315-31814334 Msa0808080:three_prime_UTR 30.0%
! CAAAGGATTTTCCTCTATTT+GGG - chr5_3:31814316-31814335 Msa0808080:three_prime_UTR 30.0%
CAACGAATTCAGCAAAATTA+TGG - chr5_3:31814425-31814444 Msa0808080:three_prime_UTR 30.0%
GGTTATGTTGCTATAAAAAC+AGG - chr5_3:31814570-31814589 Msa0808080:CDS 30.0%
! TAATGTCAATAACCCTCTTT+TGG + chr5_3:31814639-31814658 None:intergenic 30.0%
!! ATAGCTCTAAATTGGCAATT+AGG + chr5_3:31814706-31814725 None:intergenic 30.0%
!! AGAAAGGTATAGCTCTAAAT+TGG + chr5_3:31814714-31814733 None:intergenic 30.0%
!! CAATTTAGGTGAGTTTGTTT+TGG + chr5_3:31814849-31814868 None:intergenic 30.0%
CAAAACAAACTCACCTAAAT+TGG - chr5_3:31814847-31814866 Msa0808080:intron 30.0%
! TGGTATTTTCTAACCCATTT+GGG + chr5_3:31814948-31814967 None:intergenic 30.0%
! ATGGTATTTTCTAACCCATT+TGG + chr5_3:31814949-31814968 None:intergenic 30.0%
!! ATTCCTAGAAAAGTATTCCA+TGG - chr5_3:31815064-31815083 Msa0808080:intron 30.0%
!! TTCCTAGAAAAGTATTCCAT+GGG - chr5_3:31815065-31815084 Msa0808080:intron 30.0%
AACATCAAATCTCTATTGGA+TGG - chr5_3:31815242-31815261 Msa0808080:intron 30.0%
! AGAGCCTATTTAAGATCAAT+TGG - chr5_3:31815313-31815332 Msa0808080:intron 30.0%
! AATTGGTTTATCCTCAATTG+AGG - chr5_3:31815330-31815349 Msa0808080:intron 30.0%
! ATTGGTTTATCCTCAATTGA+GGG - chr5_3:31815331-31815350 Msa0808080:intron 30.0%
!! CTCTGTTTTGAACATAAATC+AGG - chr5_3:31815355-31815374 Msa0808080:intron 30.0%
!! ACTAGAATTCACCTTTTTCA+AGG - chr5_3:31815564-31815583 Msa0808080:intron 30.0%
!!! CTTTTTCAAGGTGAATAAGT+GGG - chr5_3:31815576-31815595 Msa0808080:intron 30.0%
!!! TTTTTCAAGGTGAATAAGTG+GGG - chr5_3:31815577-31815596 Msa0808080:intron 30.0%
GGATATGCATTATTATATGC+AGG + chr5_3:31815644-31815663 None:intergenic 30.0%
ACTATATTTAATACTCCCTC+CGG - chr5_3:31815690-31815709 Msa0808080:intron 30.0%
CATTGAGTAGTTAATGTATC+TGG - chr5_3:31815747-31815766 Msa0808080:intron 30.0%
CATATGTTTAGTATGACTGT+GGG + chr5_3:31815896-31815915 None:intergenic 30.0%
ACATATGTTTAGTATGACTG+TGG + chr5_3:31815897-31815916 None:intergenic 30.0%
!!! TGTTTGATTTTTTGGGATTG+AGG - chr5_3:31815919-31815938 Msa0808080:intron 30.0%
TACATTAGTAAGTCAACCTT+TGG - chr5_3:31816120-31816139 Msa0808080:intron 30.0%
GTAACTAACAATAGCAGTTT+CGG + chr5_3:31816201-31816220 None:intergenic 30.0%
!! ATGTTGATGACCATTGTAAA+TGG + chr5_3:31816296-31816315 None:intergenic 30.0%
ATGAAAAAAAACCATTGGAG+AGG + chr5_3:31816404-31816423 None:intergenic 30.0%
ATAAGAAATAAAAGGTGGTG+GGG + chr5_3:31816438-31816457 None:intergenic 30.0%
GAATAAGAAATAAAAGGTGG+TGG + chr5_3:31816440-31816459 None:intergenic 30.0%
TAAGTAAGACTATGTGCAAT+GGG + chr5_3:31817067-31817086 None:intergenic 30.0%
TTAAGTAAGACTATGTGCAA+TGG + chr5_3:31817068-31817087 None:intergenic 30.0%
CATCAAAAGAAAAAGAATGG+AGG + chr5_3:31817347-31817366 None:intergenic 30.0%
! CTCCATTCTTTTTCTTTTGA+TGG - chr5_3:31817345-31817364 Msa0808080:intron 30.0%
ATTCACATGTGATAAACCAA+AGG - chr5_3:31817455-31817474 Msa0808080:intron 30.0%
ATTAAAGTAGTTGTGACCTT+TGG + chr5_3:31817474-31817493 None:intergenic 30.0%
! TTTATGGTGTTTTCCAACAA+TGG - chr5_3:31817496-31817515 Msa0808080:intron 30.0%
TTTCTCAAGTTTACCATTGT+TGG + chr5_3:31817512-31817531 None:intergenic 30.0%
ATCAAAAGAAAAGGAATGGA+GGG - chr5_3:31817590-31817609 Msa0808080:intron 30.0%
! TTGCTTATAATTTAGGATGG+AGG - chr5_3:31817849-31817868 Msa0808080:intron 30.0%
! TGCTTATAATTTAGGATGGA+GGG - chr5_3:31817850-31817869 Msa0808080:intron 30.0%
AAATTGAAAGTTGCAAAAGG+AGG + chr5_3:31818032-31818051 None:intergenic 30.0%
TCAAAATCAACCATTCAAGA+CGG - chr5_3:31818059-31818078 Msa0808080:intron 30.0%
GATTTATAGGGCAAAGAATA+TGG + chr5_3:31818111-31818130 None:intergenic 30.0%
GCAAAAAAGAGAAAACTTAG+CGG - chr5_3:31818190-31818209 Msa0808080:intron 30.0%
CAAAAAAGAGAAAACTTAGC+GGG - chr5_3:31818191-31818210 Msa0808080:intron 30.0%
AAAAAAGAGAAAACTTAGCG+GGG - chr5_3:31818192-31818211 Msa0808080:intron 30.0%
! CTTTGCATTAATTGCGATTT+TGG + chr5_3:31818245-31818264 None:intergenic 30.0%
ATCGCAATTAATGCAAAGTT+AGG - chr5_3:31818247-31818266 Msa0808080:intron 30.0%
TCGCAATTAATGCAAAGTTA+GGG - chr5_3:31818248-31818267 Msa0808080:intron 30.0%
! AACTTTGCTAACTTTTGCAA+TGG - chr5_3:31818532-31818551 Msa0808080:intron 30.0%
CTACTGCATAATCATTATTG+AGG + chr5_3:31818582-31818601 None:intergenic 30.0%
TACATTCATATTACCAACTG+TGG - chr5_3:31818648-31818667 Msa0808080:CDS 30.0%
AAGGATCTGTATGTTTAGAA+AGG - chr5_3:31818778-31818797 Msa0808080:intron 30.0%
!! CCTTGATAATAAGGTGATTT+TGG + chr5_3:31818988-31819007 None:intergenic 30.0%
CCAAAATCACCTTATTATCA+AGG - chr5_3:31818985-31819004 Msa0808080:intron 30.0%
GAAAATACAAACCTTTGGCA+TGG + chr5_3:31814370-31814389 None:intergenic 35.0%
CGAATTCAGCAAAATTATGG+TGG - chr5_3:31814428-31814447 Msa0808080:three_prime_UTR 35.0%
! TTTGGAGCTTCACAAAATCA+CGG + chr5_3:31814456-31814475 None:intergenic 35.0%
TTTGTGAAGCTCCAAAATCA+AGG - chr5_3:31814460-31814479 Msa0808080:three_prime_UTR 35.0%
AGTCGGTCCAAACATAAATT+TGG - chr5_3:31814511-31814530 Msa0808080:three_prime_UTR 35.0%
!!! TTTTAGAGTATTCAGCCTGA+TGG - chr5_3:31814544-31814563 Msa0808080:CDS 35.0%
GCTATAAAAACAGGTTCATG+AGG - chr5_3:31814579-31814598 Msa0808080:CDS 35.0%
ATTCTCTCTGGTACCAATTT+AGG + chr5_3:31814863-31814882 None:intergenic 35.0%
! ATTTTCTAACCCATTTGGGT+CGG + chr5_3:31814944-31814963 None:intergenic 35.0%
CCACTTATTCACCTTGAAAA+AGG + chr5_3:31815578-31815597 None:intergenic 35.0%
!!! CCTTTTTCAAGGTGAATAAG+TGG - chr5_3:31815575-31815594 Msa0808080:intron 35.0%
ATTATTATATGCAGGGACTG+GGG + chr5_3:31815636-31815655 None:intergenic 35.0%
CATTATTATATGCAGGGACT+GGG + chr5_3:31815637-31815656 None:intergenic 35.0%
! TTCTTATATTTGAGACCGGA+GGG + chr5_3:31815825-31815844 None:intergenic 35.0%
! TTTCTTATATTTGAGACCGG+AGG + chr5_3:31815824-31815843 None:intergenic 35.0%
! TTTCTTATATTTGAGACCGG+AGG - chr5_3:31815824-31815843 Msa0808080:intron 35.0%
! TTCTTATATTTGAGACCGGA+GGG - chr5_3:31815825-31815844 Msa0808080:intron 35.0%
!! TTGAAAAAGTGGGTGTTGAA+GGG + chr5_3:31816325-31816344 None:intergenic 35.0%
!! ATTGAAAAAGTGGGTGTTGA+AGG + chr5_3:31816326-31816345 None:intergenic 35.0%
GTGTTGGGAATTGAAAAAGT+GGG + chr5_3:31816335-31816354 None:intergenic 35.0%
! AGTGTTGGGAATTGAAAAAG+TGG + chr5_3:31816336-31816355 None:intergenic 35.0%
TTAAGAGAGAGAAGATGATG+TGG + chr5_3:31816359-31816378 None:intergenic 35.0%
TTCAACTTTAACCTCTCCAA+TGG - chr5_3:31816390-31816409 Msa0808080:intron 35.0%
AAGCACATATGGACAAAGTT+TGG + chr5_3:31816731-31816750 None:intergenic 35.0%
TGCAATTCGTGATGAACATT+TGG - chr5_3:31816764-31816783 Msa0808080:intron 35.0%
AGTGGGTAACACATACTATT+TGG - chr5_3:31816826-31816845 Msa0808080:intron 35.0%
! TTTTTGCATGCCATGTGAAA+TGG - chr5_3:31816868-31816887 Msa0808080:intron 35.0%
! AGCTCTTAGCACAAGTTTTA+AGG - chr5_3:31817371-31817390 Msa0808080:intron 35.0%
CATCAAAAGAAAAGGAATGG+AGG - chr5_3:31817589-31817608 Msa0808080:intron 35.0%
!! CTTTGACTTAAACGCACTTT+TGG - chr5_3:31817937-31817956 Msa0808080:intron 35.0%
ATCGCAACTAGTACAAAGTT+AGG + chr5_3:31817966-31817985 None:intergenic 35.0%
TTGCAAAAGGAGGAAAACTT+AGG + chr5_3:31818022-31818041 None:intergenic 35.0%
! CAAAGAATATGGTTTGAGAC+TGG + chr5_3:31818100-31818119 None:intergenic 35.0%
CGCAATTAATGCAAAGTTAG+GGG - chr5_3:31818249-31818268 Msa0808080:intron 35.0%
ATATTACCAACTGTGGCTAA+AGG - chr5_3:31818655-31818674 Msa0808080:CDS 35.0%
! CGTTTGGTAATTGCAACTTT+AGG + chr5_3:31818721-31818740 None:intergenic 35.0%
TTGTAAGTCGTAGCTAATCA+AGG + chr5_3:31818759-31818778 None:intergenic 35.0%
! TGATTAGCTACGACTTACAA+AGG - chr5_3:31818759-31818778 Msa0808080:intron 35.0%
GGAAATTATTTGGCGATATC+CGG - chr5_3:31819006-31819025 Msa0808080:CDS 35.0%
GCTAAACTAGTCCCAAATAG+AGG + chr5_3:31814330-31814349 None:intergenic 40.0%
AGTATCTTTGTCCATGCCAA+AGG - chr5_3:31814356-31814375 Msa0808080:three_prime_UTR 40.0%
AGCAACATAACCAAACCATC+AGG + chr5_3:31814562-31814581 None:intergenic 40.0%
! AGAATTGAGTCTGAGACCTT+AGG - chr5_3:31814878-31814897 Msa0808080:intron 40.0%
! GAATTGAGTCTGAGACCTTA+GGG - chr5_3:31814879-31814898 Msa0808080:intron 40.0%
! CTCCCATGGAATACTTTTCT+AGG + chr5_3:31815070-31815089 None:intergenic 40.0%
TATTCCATGGGAGACAAAGA+GGG - chr5_3:31815077-31815096 Msa0808080:intron 40.0%
TTTCTAGGTGGAAACCAACA+AGG + chr5_3:31815128-31815147 None:intergenic 40.0%
!! ACAAATGCCAGGCTATTTCT+AGG + chr5_3:31815143-31815162 None:intergenic 40.0%
GAAATAGCCTGGCATTTGTT+TGG - chr5_3:31815144-31815163 Msa0808080:intron 40.0%
AAAACAGAGTCCCTCAATTG+AGG + chr5_3:31815344-31815363 None:intergenic 40.0%
! TAGTGGATACGTCACAATCA+CGG - chr5_3:31815478-31815497 Msa0808080:intron 40.0%
GCATTATTATATGCAGGGAC+TGG + chr5_3:31815638-31815657 None:intergenic 40.0%
TTTATAGAAGCTACTCCCTC+CGG + chr5_3:31815843-31815862 None:intergenic 40.0%
CCAGTCAAAAATAGTAACGC+TGG + chr5_3:31816177-31816196 None:intergenic 40.0%
!!! CCAGCGTTACTATTTTTGAC+TGG - chr5_3:31816174-31816193 Msa0808080:intron 40.0%
! AGAAGATGATGTGGAGTGTT+GGG + chr5_3:31816350-31816369 None:intergenic 40.0%
CAGATCTAGTGAAGCACATA+TGG + chr5_3:31816742-31816761 None:intergenic 40.0%
AACATTTGGATCACGCAACT+CGG - chr5_3:31816778-31816797 Msa0808080:intron 40.0%
! ACGCACATGATTTGCAAAAG+TGG - chr5_3:31816808-31816827 Msa0808080:intron 40.0%
! CGCACATGATTTGCAAAAGT+GGG - chr5_3:31816809-31816828 Msa0808080:intron 40.0%
GCATTCTGTGGCAGATTAAT+TGG - chr5_3:31816940-31816959 Msa0808080:intron 40.0%
TGGATGAGAGAGAGGATTAA+CGG + chr5_3:31816974-31816993 None:intergenic 40.0%
AACAAGGAAAACCAGTGCAA+TGG + chr5_3:31817025-31817044 None:intergenic 40.0%
GTTTAACCTGACAGTCAACA+AGG + chr5_3:31817041-31817060 None:intergenic 40.0%
! GTTCTTTTCTGTGTCTTACG+TGG + chr5_3:31817128-31817147 None:intergenic 40.0%
ATATGGGACGAAGTGAGTAA+TGG + chr5_3:31817280-31817299 None:intergenic 40.0%
TGATCTTCTACCGTCTTGAA+TGG + chr5_3:31818072-31818091 None:intergenic 40.0%
! GGCTTAAACAGTCACACTTT+TGG + chr5_3:31818276-31818295 None:intergenic 40.0%
TTCCAACACATTCACTTCCA+TGG + chr5_3:31818614-31818633 None:intergenic 40.0%
GGCAAATTATTCCCATCAAC+AGG - chr5_3:31818686-31818705 Msa0808080:intron 40.0%
GTAATTGCAACTTTAGGCAG+AGG + chr5_3:31818715-31818734 None:intergenic 40.0%
GTGAAGCTCCAAAATCAAGG+CGG - chr5_3:31814463-31814482 Msa0808080:three_prime_UTR 45.0%
! GATTTTGCCAATCTCGCAGT+CGG - chr5_3:31814494-31814513 Msa0808080:three_prime_UTR 45.0%
GAGTATTCAGCCTGATGGTT+TGG - chr5_3:31814549-31814568 Msa0808080:CDS 45.0%
!! AGTGTGAGAAGTGCCAAAAG+AGG - chr5_3:31814623-31814642 Msa0808080:CDS 45.0%
!! GTGTGAGAAGTGCCAAAAGA+GGG - chr5_3:31814624-31814643 Msa0808080:CDS 45.0%
GTCTCAGACTCAATTCTCTC+TGG + chr5_3:31814875-31814894 None:intergenic 45.0%
ACCATCAAATCCGACCCAAA+TGG - chr5_3:31814931-31814950 Msa0808080:intron 45.0%
CCATCAAATCCGACCCAAAT+GGG - chr5_3:31814932-31814951 Msa0808080:intron 45.0%
GTATTCCATGGGAGACAAAG+AGG - chr5_3:31815076-31815095 Msa0808080:intron 45.0%
GTTTCCACCTAGAAATAGCC+TGG - chr5_3:31815133-31815152 Msa0808080:intron 45.0%
!! AATGCCAGGCTATTTCTAGG+TGG + chr5_3:31815140-31815159 None:intergenic 45.0%
TCTGCTACCAAACAAATGCC+AGG + chr5_3:31815154-31815173 None:intergenic 45.0%
GAGAAGATGATGTGGAGTGT+TGG + chr5_3:31816351-31816370 None:intergenic 45.0%
AGAATGCTCGCCATTTCACA+TGG + chr5_3:31816881-31816900 None:intergenic 45.0%
TCCAGCAGTTCATTCAACAG+AGG - chr5_3:31816990-31817009 Msa0808080:intron 45.0%
ACCTCTGTTGAATGAACTGC+TGG + chr5_3:31816994-31817013 None:intergenic 45.0%
!! GGTTTTCCTTGTTGACTGTC+AGG - chr5_3:31817032-31817051 Msa0808080:intron 45.0%
! CTTTTCTGTGTCTTACGTGG+TGG + chr5_3:31817125-31817144 None:intergenic 45.0%
GCAAGCTCAAGAGTTAGCAA+AGG + chr5_3:31818560-31818579 None:intergenic 45.0%
GTCCATGGAAGTGAATGTGT+TGG - chr5_3:31818609-31818628 Msa0808080:intron 45.0%
GTGATTCCTTTAGCCACAGT+TGG + chr5_3:31818664-31818683 None:intergenic 45.0%
CTGTGGCTAAAGGAATCACT+AGG - chr5_3:31818665-31818684 Msa0808080:intron 45.0%
!!! TGTTTTTTTTTTTATAATAT+GGG + chr5_3:31817296-31817315 None:intergenic 5.0%
CTGCGAGATTGGCAAAATCG+TGG + chr5_3:31814493-31814512 None:intergenic 50.0%
CCCATTTGGGTCGGATTTGA+TGG + chr5_3:31814935-31814954 None:intergenic 50.0%
TTGGAAGAGGTGGTCCTTGT+TGG - chr5_3:31815111-31815130 Msa0808080:intron 50.0%
! AGGTGAATAAGTGGGGTGTC+TGG - chr5_3:31815584-31815603 Msa0808080:intron 50.0%
! GGTGAATAAGTGGGGTGTCT+GGG - chr5_3:31815585-31815604 Msa0808080:intron 50.0%
! GTGAATAAGTGGGGTGTCTG+GGG - chr5_3:31815586-31815605 Msa0808080:intron 50.0%
TGAGCATAGCTCAGTTGGCA+GGG + chr5_3:31815665-31815684 None:intergenic 50.0%
ATGAGCATAGCTCAGTTGGC+AGG + chr5_3:31815666-31815685 None:intergenic 50.0%
TGCCAACTGAGCTATGCTCA+TGG - chr5_3:31815665-31815684 Msa0808080:intron 50.0%
CTCCATGAGCATAGCTCAGT+TGG + chr5_3:31815670-31815689 None:intergenic 50.0%
GTGAAATGGCGAGCATTCTG+TGG - chr5_3:31816882-31816901 Msa0808080:intron 50.0%
CATTCTGTGGCAATCCTGTG+CGG - chr5_3:31816895-31816914 Msa0808080:intron 50.0%
TGAACTGCTGGATGAGAGAG+AGG + chr5_3:31816982-31817001 None:intergenic 50.0%
GGTTCAACATGCCATTGCAC+TGG - chr5_3:31817011-31817030 Msa0808080:intron 50.0%
TGCAGTAGAGACAGAGTCCA+TGG - chr5_3:31818594-31818613 Msa0808080:intron 50.0%
GGCAGAGGATTCCTGTTGAT+GGG + chr5_3:31818700-31818719 None:intergenic 50.0%
AGGCAGAGGATTCCTGTTGA+TGG + chr5_3:31818701-31818720 None:intergenic 50.0%
! GTGGTGAGCCGCCTTGATTT+TGG + chr5_3:31814474-31814493 None:intergenic 55.0%
GTTTGGACCGACTGCGAGAT+TGG + chr5_3:31814504-31814523 None:intergenic 55.0%
TCCATGGGAGACAAAGAGGG+TGG - chr5_3:31815080-31815099 Msa0808080:intron 55.0%
CCATGGGAGACAAAGAGGGT+GGG - chr5_3:31815081-31815100 Msa0808080:intron 55.0%
CATGGGAGACAAAGAGGGTG+GGG - chr5_3:31815082-31815101 Msa0808080:intron 55.0%
ATCTGCCACAGAATGCCACG+TGG + chr5_3:31816936-31816955 None:intergenic 55.0%
CCCACCCTCTTTGTCTCCCA+TGG + chr5_3:31815084-31815103 None:intergenic 60.0%
AAAGAGGGTGGGGCACACGT+TGG - chr5_3:31815092-31815111 Msa0808080:intron 60.0%
AGGGACTGGGGTTCATGCAG+GGG + chr5_3:31815624-31815643 None:intergenic 60.0%
CAGGGACTGGGGTTCATGCA+GGG + chr5_3:31815625-31815644 None:intergenic 60.0%
TGCCACAGAATGCCACGTGG+CGG + chr5_3:31816933-31816952 None:intergenic 60.0%
GGTGGGGCACACGTTGGAAG+AGG - chr5_3:31815098-31815117 Msa0808080:intron 65.0%
GGGGCACACGTTGGAAGAGG+TGG - chr5_3:31815101-31815120 Msa0808080:intron 65.0%
TGGGGTTCATGCAGGGGCTG+GGG + chr5_3:31815618-31815637 None:intergenic 65.0%
CTGGGGTTCATGCAGGGGCT+GGG + chr5_3:31815619-31815638 None:intergenic 65.0%
ACTGGGGTTCATGCAGGGGC+TGG + chr5_3:31815620-31815639 None:intergenic 65.0%
GCAGGGACTGGGGTTCATGC+AGG + chr5_3:31815626-31815645 None:intergenic 65.0%
GGCGTGCAATTGGACCGCAC+AGG + chr5_3:31816912-31816931 None:intergenic 65.0%
TCCAATTGCACGCCGCCACG+TGG - chr5_3:31816918-31816937 Msa0808080:intron 65.0%
GCCACGTGGCGGCGTGCAAT+TGG + chr5_3:31816922-31816941 None:intergenic 70.0%
CGCCGCCACGTGGCATTCTG+TGG - chr5_3:31816928-31816947 Msa0808080:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 31814261 31819038 31814261 ID=Msa0808080;Name=Msa0808080
chr5_3 mRNA 31814261 31819038 31814261 ID=Msa0808080-mRNA-1;Parent=Msa0808080;Name=Msa0808080-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.5|0.33|1|0|0|3|273|91
chr5_3 exon 31814261 31814700 31814261 ID=Msa0808080-mRNA-1:exon:10541;Parent=Msa0808080-mRNA-1
chr5_3 exon 31818626 31818682 31818626 ID=Msa0808080-mRNA-1:exon:10540;Parent=Msa0808080-mRNA-1
chr5_3 exon 31818987 31819038 31818987 ID=Msa0808080-mRNA-1:exon:10539;Parent=Msa0808080-mRNA-1
chr5_3 CDS 31818987 31819038 31818987 ID=Msa0808080-mRNA-1:cds;Parent=Msa0808080-mRNA-1
chr5_3 CDS 31818626 31818682 31818626 ID=Msa0808080-mRNA-1:cds;Parent=Msa0808080-mRNA-1
chr5_3 CDS 31814534 31814700 31814534 ID=Msa0808080-mRNA-1:cds;Parent=Msa0808080-mRNA-1
chr5_3 three_prime_UTR 31814261 31814533 31814261 ID=Msa0808080-mRNA-1:three_prime_utr;Parent=Msa0808080-mRNA-1
Gene Sequence

>Msa0808080

ATGGCTTTTAAAGATAGTGCTAAAAGCGAGCTTCACGAAATTGCTATAAAAAATATGCAGTGTGAGAAGTGCCAAAAGAGGGTTATTGACATTATTACAAAAATGAATGTAGAGACAGAGTCCATGGAAGTGAATGTGTTGGAAAAGAAAGTGACACTTACATTCATATTACCAACTGTGGCTAAAGGAATCACTAGGCAAATTATTCCCATCAACAGGAATCCTCTGCCTAAAGTTGCAATTACCAAACGTTTATTTCAATCTTTCCTTGATTAG

Protein sequence

>Msa0808080

MAFKDSAKSELHEIAIKNMQCEKCQKRVIDIITKMNVETESMEVNVLEKKVTLTFILPTVAKGITRQIIPINRNPLPKVAITKRLFQSFLD*