AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0453350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0453350 MtrunA17_Chr3g0099771 98.020 101 2 0 1 101 1 101 1.87e-71 207
Msa0453350 MtrunA17_Chr3g0099761 99.010 101 1 0 1 101 1 101 2.15e-71 207
Msa0453350 MtrunA17_Chr8g0337911 60.811 74 29 0 21 94 212 285 1.40e-27 103
Msa0453350 MtrunA17_Chr8g0337911 61.972 71 27 0 23 93 291 361 2.12e-22 89.0
Msa0453350 MtrunA17_Chr8g0337911 51.724 87 38 1 11 93 121 207 1.39e-21 87.0
Msa0453350 MtrunA17_Chr8g0337911 46.835 79 39 2 23 100 57 133 8.54e-16 70.9
Msa0453350 MtrunA17_Chr8g0337921 46.237 93 49 1 3 95 64 155 8.65e-26 95.9
Msa0453350 MtrunA17_Chr8g0337921 52.632 76 36 0 23 98 162 237 2.26e-21 84.7
Msa0453350 MtrunA17_Chr3g0099841 45.283 53 29 0 29 81 39 91 3.90e-11 54.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0453350 AT5G55160.1 91.489 94 5 2 5 98 2 92 1.58e-57 172
Msa0453350 AT4G26840.1 91.111 90 8 0 7 96 2 91 3.20e-57 172
Msa0453350 AT5G55160.2 80.374 107 5 3 5 98 2 105 5.53e-54 164
Msa0453350 AT5G55856.1 51.163 86 42 0 13 98 5 90 1.41e-26 94.4
Msa0453350 AT5G55170.1 50.562 89 42 1 12 98 5 93 3.37e-25 91.3
Msa0453350 AT5G55855.2 46.512 86 46 0 13 98 5 90 8.69e-24 87.4
Msa0453350 AT5G48710.3 46.591 88 46 1 12 98 17 104 7.01e-23 85.5
Msa0453350 AT5G48710.2 46.591 88 46 1 12 98 17 104 7.01e-23 85.5
Msa0453350 AT5G48710.1 46.591 88 46 1 12 98 17 104 7.01e-23 85.5
Msa0453350 AT5G55170.3 47.191 89 41 2 12 98 5 89 7.84e-21 80.1
Msa0453350 AT2G32765.1 43.421 76 43 0 23 98 28 103 8.87e-21 80.1
Msa0453350 AT5G48700.1 42.222 90 50 2 11 98 19 108 6.77e-18 72.8
Msa0453350 AT5G55170.2 47.887 71 35 1 12 80 5 75 2.59e-17 71.2
Msa0453350 AT5G48710.4 39.437 71 42 1 12 81 17 87 4.06e-14 62.8

Find 25 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTGAGCACCACCAGCTTC+TGG 0.265597 3_3:-43570860 None:intergenic
CTTCTTGTCTTCCTCAATGT+TGG 0.304732 3_3:-43570837 None:intergenic
TTCTTGTCTTCCTCAATGTT+GGG 0.309100 3_3:-43570836 None:intergenic
TTTCAGTTGGAGATGGAAGA+TGG 0.431884 3_3:+43572890 Msa0453350:intron
TCATATTCACGAACCTCATC+GGG 0.477321 3_3:-43572778 None:intergenic
AAGATTCTCAAGATGTCGTC+AGG 0.499126 3_3:+43570803 None:intergenic
GTCATATTCACGAACCTCAT+CGG 0.504722 3_3:-43572779 None:intergenic
CAACCTCAAGGTCAAGGGTC+AGG 0.516757 3_3:+43570883 Msa0453350:CDS
GAAGACAAGAAGCCAGAAGC+TGG 0.521656 3_3:+43570848 Msa0453350:CDS
TGTCCTGTTTCAGTTGGAGA+TGG 0.533449 3_3:+43572883 Msa0453350:intron
TTCAGTTGGAGATGGAAGAT+GGG 0.544422 3_3:+43572891 Msa0453350:intron
GACGCCATGCTTCATCAGAC+AGG 0.556706 3_3:+43572923 Msa0453350:CDS
GAACCTGACCCTTGACCTTG+AGG 0.575367 3_3:-43570886 None:intergenic
CCCATCAAAGAGAAAAGCAA+TGG 0.577412 3_3:-43572731 None:intergenic
ACCTCCTGTCTGATGAAGCA+TGG 0.580486 3_3:-43572927 None:intergenic
TCACATCAACCTCAAGGTCA+AGG 0.582181 3_3:+43570877 Msa0453350:CDS
TGCAGCTGCTCCCAACATTG+AGG 0.590382 3_3:+43570826 Msa0453350:CDS
CACATCAACCTCAAGGTCAA+GGG 0.593562 3_3:+43570878 Msa0453350:CDS
TGGTGCTCACATCAACCTCA+AGG 0.628444 3_3:+43570871 Msa0453350:CDS
GCCATGCTTCATCAGACAGG+AGG 0.629302 3_3:+43572926 Msa0453350:CDS
CATCGGGAGTCTGCTCAGCA+CGG 0.629541 3_3:-43572762 None:intergenic
TGCTGAGCAGACTCCCGATG+AGG 0.643397 3_3:+43572765 Msa0453350:CDS
TCAGTTGGAGATGGAAGATG+GGG 0.647712 3_3:+43572892 Msa0453350:intron
TTACTGTGATCGTCAGTCTG+TGG 0.670146 3_3:+43572699 Msa0453350:CDS
GACAAGAAGCCAGAAGCTGG+TGG 0.675369 3_3:+43570851 Msa0453350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGAAATTTTCAATTTTT+AGG + chr3_3:43570942-43570961 Msa0453350:intron 10.0%
!!! TTTGAAATTTTCAATTTTTA+GGG + chr3_3:43570943-43570962 Msa0453350:intron 10.0%
!!! TTTTGAAATTTTCAATTTTT+AGG + chr3_3:43570942-43570961 Msa0453350:intron 10.0%
!!! TTTGAAATTTTCAATTTTTA+GGG + chr3_3:43570943-43570962 Msa0453350:intron 10.0%
!!! TTTTTTTTTTTTTGGATTCA+TGG + chr3_3:43571111-43571130 Msa0453350:intron 15.0%
!!! AATATTTTTTACTATGCTTT+AGG + chr3_3:43571167-43571186 Msa0453350:intron 15.0%
!! TATAGAGTATAAAATGAATT+TGG + chr3_3:43571372-43571391 Msa0453350:intron 15.0%
!! AAGCTACAATATAAAATTTA+AGG - chr3_3:43572286-43572305 None:intergenic 15.0%
!!! TTTTTTTTTTTTTGGATTCA+TGG + chr3_3:43571111-43571130 Msa0453350:intron 15.0%
!!! AATATTTTTTACTATGCTTT+AGG + chr3_3:43571167-43571186 Msa0453350:intron 15.0%
!! TATAGAGTATAAAATGAATT+TGG + chr3_3:43571372-43571391 Msa0453350:intron 15.0%
!! AAGCTACAATATAAAATTTA+AGG - chr3_3:43572286-43572305 None:intergenic 15.0%
!!! TCATTTTATACTCTATAAGT+TGG - chr3_3:43571369-43571388 None:intergenic 20.0%
!!! TATCTTTTCATGTTTTCATT+AGG + chr3_3:43571824-43571843 Msa0453350:intron 20.0%
!!! TTATATCTTTGTATCTGTTT+TGG + chr3_3:43571931-43571950 Msa0453350:intron 20.0%
!!! TGGTTATCTAAATTTTATAG+TGG + chr3_3:43571951-43571970 Msa0453350:intron 20.0%
!! AAAAAATAATTAGAGATGTG+CGG - chr3_3:43572153-43572172 None:intergenic 20.0%
!!! AATGTGTTTCTTTTTAATGT+CGG + chr3_3:43572193-43572212 Msa0453350:intron 20.0%
!!! TTTTTGTTTCTATTGTTTGA+TGG + chr3_3:43572307-43572326 Msa0453350:intron 20.0%
!! AGAGATATAATTGATCTAAA+AGG - chr3_3:43572337-43572356 None:intergenic 20.0%
!! TATATCTCTATACTCAAAAT+TGG + chr3_3:43572348-43572367 Msa0453350:intron 20.0%
!!! TCATTTTATACTCTATAAGT+TGG - chr3_3:43571369-43571388 None:intergenic 20.0%
!!! TATCTTTTCATGTTTTCATT+AGG + chr3_3:43571824-43571843 Msa0453350:intron 20.0%
!!! TTATATCTTTGTATCTGTTT+TGG + chr3_3:43571931-43571950 Msa0453350:intron 20.0%
!!! TGGTTATCTAAATTTTATAG+TGG + chr3_3:43571951-43571970 Msa0453350:intron 20.0%
!! AAAAAATAATTAGAGATGTG+CGG - chr3_3:43572153-43572172 None:intergenic 20.0%
!!! AATGTGTTTCTTTTTAATGT+CGG + chr3_3:43572193-43572212 Msa0453350:intron 20.0%
!!! TTTTTGTTTCTATTGTTTGA+TGG + chr3_3:43572307-43572326 Msa0453350:intron 20.0%
!! AGAGATATAATTGATCTAAA+AGG - chr3_3:43572337-43572356 None:intergenic 20.0%
!! TATATCTCTATACTCAAAAT+TGG + chr3_3:43572348-43572367 Msa0453350:intron 20.0%
!!! TCCACAAAGTTTTAATCAAA+CGG - chr3_3:43570972-43570991 None:intergenic 25.0%
! TTGATTAAAACTTTGTGGAT+CGG + chr3_3:43570973-43570992 Msa0453350:intron 25.0%
!! TTATTGTTTGTTGAAGCATT+AGG + chr3_3:43571042-43571061 Msa0453350:intron 25.0%
!! TATTGTTTGTTGAAGCATTA+GGG + chr3_3:43571043-43571062 Msa0453350:intron 25.0%
!!! TTTTGATTTGATCGTTTGAT+AGG + chr3_3:43571075-43571094 Msa0453350:intron 25.0%
!!! TTTTACTATGCTTTAGGATT+TGG + chr3_3:43571173-43571192 Msa0453350:intron 25.0%
! GATTATGAACACACAAATAA+GGG - chr3_3:43571221-43571240 None:intergenic 25.0%
! AGATTATGAACACACAAATA+AGG - chr3_3:43571222-43571241 None:intergenic 25.0%
!! AATAAGATCTTTTACCAAAG+AGG + chr3_3:43571461-43571480 Msa0453350:intron 25.0%
!! ATAAGATCTTTTACCAAAGA+GGG + chr3_3:43571462-43571481 Msa0453350:intron 25.0%
! ATAGAAATTAATTCCCTCTT+TGG - chr3_3:43571478-43571497 None:intergenic 25.0%
! TAAATCATGTGTGAAAAAAG+AGG + chr3_3:43571575-43571594 Msa0453350:intron 25.0%
!!! TCTTTTTTAGTAATGAATGC+TGG + chr3_3:43571609-43571628 Msa0453350:intron 25.0%
! ACTTCAAAAAACTATGTTAG+TGG + chr3_3:43571690-43571709 Msa0453350:intron 25.0%
!!! CTATGTTAGTGGTTATTTTT+TGG + chr3_3:43571701-43571720 Msa0453350:intron 25.0%
! GCTATGAATTATTGTTCATT+CGG + chr3_3:43571749-43571768 Msa0453350:intron 25.0%
! CTATGAATTATTGTTCATTC+GGG + chr3_3:43571750-43571769 Msa0453350:intron 25.0%
!! GTTTTCATTAGGATATCTTT+TGG + chr3_3:43571835-43571854 Msa0453350:intron 25.0%
!! AAATTTTATAGTGGCACTAT+TGG + chr3_3:43571960-43571979 Msa0453350:intron 25.0%
!!! TTTTCTAAAGAGTTTTACTC+TGG + chr3_3:43572391-43572410 Msa0453350:intron 25.0%
! TTGGAATTATATGCTAATCT+TGG + chr3_3:43572595-43572614 Msa0453350:intron 25.0%
!!! TCCACAAAGTTTTAATCAAA+CGG - chr3_3:43570972-43570991 None:intergenic 25.0%
! TTGATTAAAACTTTGTGGAT+CGG + chr3_3:43570973-43570992 Msa0453350:intron 25.0%
!! TTATTGTTTGTTGAAGCATT+AGG + chr3_3:43571042-43571061 Msa0453350:intron 25.0%
!! TATTGTTTGTTGAAGCATTA+GGG + chr3_3:43571043-43571062 Msa0453350:intron 25.0%
!!! TTTTGATTTGATCGTTTGAT+AGG + chr3_3:43571075-43571094 Msa0453350:intron 25.0%
!!! TTTTACTATGCTTTAGGATT+TGG + chr3_3:43571173-43571192 Msa0453350:intron 25.0%
! GATTATGAACACACAAATAA+GGG - chr3_3:43571221-43571240 None:intergenic 25.0%
! AGATTATGAACACACAAATA+AGG - chr3_3:43571222-43571241 None:intergenic 25.0%
!! AATAAGATCTTTTACCAAAG+AGG + chr3_3:43571461-43571480 Msa0453350:intron 25.0%
!! ATAAGATCTTTTACCAAAGA+GGG + chr3_3:43571462-43571481 Msa0453350:intron 25.0%
! ATAGAAATTAATTCCCTCTT+TGG - chr3_3:43571478-43571497 None:intergenic 25.0%
! TAAATCATGTGTGAAAAAAG+AGG + chr3_3:43571575-43571594 Msa0453350:intron 25.0%
!!! TCTTTTTTAGTAATGAATGC+TGG + chr3_3:43571609-43571628 Msa0453350:intron 25.0%
! ACTTCAAAAAACTATGTTAG+TGG + chr3_3:43571690-43571709 Msa0453350:intron 25.0%
!!! CTATGTTAGTGGTTATTTTT+TGG + chr3_3:43571701-43571720 Msa0453350:intron 25.0%
! GCTATGAATTATTGTTCATT+CGG + chr3_3:43571749-43571768 Msa0453350:intron 25.0%
! CTATGAATTATTGTTCATTC+GGG + chr3_3:43571750-43571769 Msa0453350:intron 25.0%
!! GTTTTCATTAGGATATCTTT+TGG + chr3_3:43571835-43571854 Msa0453350:intron 25.0%
!! AAATTTTATAGTGGCACTAT+TGG + chr3_3:43571960-43571979 Msa0453350:intron 25.0%
!!! TTTTCTAAAGAGTTTTACTC+TGG + chr3_3:43572391-43572410 Msa0453350:intron 25.0%
! TTGGAATTATATGCTAATCT+TGG + chr3_3:43572595-43572614 Msa0453350:intron 25.0%
AAATTTCAAAAACGAAACCC+TGG - chr3_3:43570933-43570952 None:intergenic 30.0%
TCCGTTTGATTAAAACTTTG+TGG + chr3_3:43570968-43570987 Msa0453350:intron 30.0%
!!! GATTTTTAACTTCGGTTACT+TGG + chr3_3:43570997-43571016 Msa0453350:intron 30.0%
!! TTTGAGATTGTTTTCGTCTT+TGG - chr3_3:43571531-43571550 None:intergenic 30.0%
! TGGGATATATGTATTGCTTT+TGG + chr3_3:43571661-43571680 Msa0453350:intron 30.0%
AAAAGTGGAACCAAAAGATT+TGG - chr3_3:43571782-43571801 None:intergenic 30.0%
!!! AAATCTTTTGGTTCCACTTT+TGG + chr3_3:43571781-43571800 Msa0453350:intron 30.0%
!!! AATCTTTTGGTTCCACTTTT+GGG + chr3_3:43571782-43571801 Msa0453350:intron 30.0%
! ATTGGTTTCTTCAGAAAAAC+AGG + chr3_3:43571978-43571997 Msa0453350:intron 30.0%
TGATGTTTAATTAGAGAGCA+GGG + chr3_3:43572001-43572020 Msa0453350:intron 30.0%
CAATATCAATTGGAGAGAAT+GGG + chr3_3:43572081-43572100 Msa0453350:intron 30.0%
! CAGTTGTGTTTCATCTTTTA+TGG + chr3_3:43572104-43572123 Msa0453350:intron 30.0%
! TATAAGTTTGGCTTACAAAG+AGG + chr3_3:43572258-43572277 Msa0453350:intron 30.0%
CTCGATAATAACACTTTCAA+TGG - chr3_3:43572432-43572451 None:intergenic 30.0%
! AGTTTTCATATCATCAGTCT+TGG + chr3_3:43572498-43572517 Msa0453350:intron 30.0%
TCTTGGTTACTGTTGTAAAT+TGG + chr3_3:43572515-43572534 Msa0453350:intron 30.0%
ACTGTTGTAAATTGGTTACA+TGG + chr3_3:43572523-43572542 Msa0453350:intron 30.0%
GGATACATGAAACTAAACAT+TGG + chr3_3:43572576-43572595 Msa0453350:intron 30.0%
TAAATATGTCCTGTTTCAGT+TGG + chr3_3:43572877-43572896 Msa0453350:intron 30.0%
AAATTTCAAAAACGAAACCC+TGG - chr3_3:43570933-43570952 None:intergenic 30.0%
TCCGTTTGATTAAAACTTTG+TGG + chr3_3:43570968-43570987 Msa0453350:intron 30.0%
!!! GATTTTTAACTTCGGTTACT+TGG + chr3_3:43570997-43571016 Msa0453350:intron 30.0%
!! TTTGAGATTGTTTTCGTCTT+TGG - chr3_3:43571531-43571550 None:intergenic 30.0%
! TGGGATATATGTATTGCTTT+TGG + chr3_3:43571661-43571680 Msa0453350:intron 30.0%
AAAAGTGGAACCAAAAGATT+TGG - chr3_3:43571782-43571801 None:intergenic 30.0%
!!! AAATCTTTTGGTTCCACTTT+TGG + chr3_3:43571781-43571800 Msa0453350:intron 30.0%
!!! AATCTTTTGGTTCCACTTTT+GGG + chr3_3:43571782-43571801 Msa0453350:intron 30.0%
! ATTGGTTTCTTCAGAAAAAC+AGG + chr3_3:43571978-43571997 Msa0453350:intron 30.0%
TGATGTTTAATTAGAGAGCA+GGG + chr3_3:43572001-43572020 Msa0453350:intron 30.0%
CAATATCAATTGGAGAGAAT+GGG + chr3_3:43572081-43572100 Msa0453350:intron 30.0%
! CAGTTGTGTTTCATCTTTTA+TGG + chr3_3:43572104-43572123 Msa0453350:intron 30.0%
! TATAAGTTTGGCTTACAAAG+AGG + chr3_3:43572258-43572277 Msa0453350:intron 30.0%
CTCGATAATAACACTTTCAA+TGG - chr3_3:43572432-43572451 None:intergenic 30.0%
! AGTTTTCATATCATCAGTCT+TGG + chr3_3:43572498-43572517 Msa0453350:intron 30.0%
TCTTGGTTACTGTTGTAAAT+TGG + chr3_3:43572515-43572534 Msa0453350:intron 30.0%
ACTGTTGTAAATTGGTTACA+TGG + chr3_3:43572523-43572542 Msa0453350:intron 30.0%
GGATACATGAAACTAAACAT+TGG + chr3_3:43572576-43572595 Msa0453350:intron 30.0%
TAAATATGTCCTGTTTCAGT+TGG + chr3_3:43572877-43572896 Msa0453350:intron 30.0%
TTCTTGTCTTCCTCAATGTT+GGG - chr3_3:43570839-43570858 None:intergenic 35.0%
! TGTTTCTTGTTTCGATTTCC+AGG + chr3_3:43570912-43570931 Msa0453350:intron 35.0%
! GTTTCTTGTTTCGATTTCCA+GGG + chr3_3:43570913-43570932 Msa0453350:intron 35.0%
!!! GGATCGGTGATTTTTAACTT+CGG + chr3_3:43570989-43571008 Msa0453350:intron 35.0%
! TGGTATCTTGTTGATGAGTT+GGG + chr3_3:43571642-43571661 Msa0453350:intron 35.0%
TTGGGTGATATGGAAACATT+AGG + chr3_3:43571800-43571819 Msa0453350:intron 35.0%
AAACGTGCAAACATGAAAAG+TGG - chr3_3:43571863-43571882 None:intergenic 35.0%
GTGATGTTTAATTAGAGAGC+AGG + chr3_3:43572000-43572019 Msa0453350:intron 35.0%
ATATTGCAAGGGAACACTTT+CGG - chr3_3:43572067-43572086 None:intergenic 35.0%
TGTTCCCTTGCAATATCAAT+TGG + chr3_3:43572071-43572090 Msa0453350:intron 35.0%
CTCTCCAATTGATATTGCAA+GGG - chr3_3:43572078-43572097 None:intergenic 35.0%
TCTCTCCAATTGATATTGCA+AGG - chr3_3:43572079-43572098 None:intergenic 35.0%
GCAATATCAATTGGAGAGAA+TGG + chr3_3:43572080-43572099 Msa0453350:intron 35.0%
ATACAGATTGCAGACATGAA+GGG - chr3_3:43572241-43572260 None:intergenic 35.0%
TATACAGATTGCAGACATGA+AGG - chr3_3:43572242-43572261 None:intergenic 35.0%
GTCTGCAATCTGTATAAGTT+TGG + chr3_3:43572246-43572265 Msa0453350:intron 35.0%
TTGGACATTTCAAAGTGAAC+TGG + chr3_3:43572367-43572386 Msa0453350:intron 35.0%
! AAAGAGTTTTACTCTGGTGT+TGG + chr3_3:43572397-43572416 Msa0453350:intron 35.0%
!! TTTTACTCTGGTGTTGGATT+TGG + chr3_3:43572403-43572422 Msa0453350:intron 35.0%
TCTTGGTTACTGTCGTAAAT+TGG + chr3_3:43572552-43572571 Msa0453350:intron 35.0%
! ATGCTAATCTTGGTCTGTTT+TGG + chr3_3:43572605-43572624 Msa0453350:intron 35.0%
!! ATGGTAACGAAGTGTTTTTC+AGG + chr3_3:43572638-43572657 Msa0453350:CDS 35.0%
!!! AAGTGTTTTTCAGGATCAAG+AGG + chr3_3:43572647-43572666 Msa0453350:CDS 35.0%
!! TCCATTGCTTTTCTCTTTGA+TGG + chr3_3:43572730-43572749 Msa0453350:CDS 35.0%
!! CCATTGCTTTTCTCTTTGAT+GGG + chr3_3:43572731-43572750 Msa0453350:CDS 35.0%
TTCTTGTCTTCCTCAATGTT+GGG - chr3_3:43570839-43570858 None:intergenic 35.0%
! TGTTTCTTGTTTCGATTTCC+AGG + chr3_3:43570912-43570931 Msa0453350:intron 35.0%
! GTTTCTTGTTTCGATTTCCA+GGG + chr3_3:43570913-43570932 Msa0453350:intron 35.0%
!!! GGATCGGTGATTTTTAACTT+CGG + chr3_3:43570989-43571008 Msa0453350:intron 35.0%
! TGGTATCTTGTTGATGAGTT+GGG + chr3_3:43571642-43571661 Msa0453350:intron 35.0%
TTGGGTGATATGGAAACATT+AGG + chr3_3:43571800-43571819 Msa0453350:intron 35.0%
AAACGTGCAAACATGAAAAG+TGG - chr3_3:43571863-43571882 None:intergenic 35.0%
GTGATGTTTAATTAGAGAGC+AGG + chr3_3:43572000-43572019 Msa0453350:intron 35.0%
ATATTGCAAGGGAACACTTT+CGG - chr3_3:43572067-43572086 None:intergenic 35.0%
TGTTCCCTTGCAATATCAAT+TGG + chr3_3:43572071-43572090 Msa0453350:intron 35.0%
CTCTCCAATTGATATTGCAA+GGG - chr3_3:43572078-43572097 None:intergenic 35.0%
TCTCTCCAATTGATATTGCA+AGG - chr3_3:43572079-43572098 None:intergenic 35.0%
GCAATATCAATTGGAGAGAA+TGG + chr3_3:43572080-43572099 Msa0453350:intron 35.0%
ATACAGATTGCAGACATGAA+GGG - chr3_3:43572241-43572260 None:intergenic 35.0%
TATACAGATTGCAGACATGA+AGG - chr3_3:43572242-43572261 None:intergenic 35.0%
GTCTGCAATCTGTATAAGTT+TGG + chr3_3:43572246-43572265 Msa0453350:intron 35.0%
TTGGACATTTCAAAGTGAAC+TGG + chr3_3:43572367-43572386 Msa0453350:intron 35.0%
! AAAGAGTTTTACTCTGGTGT+TGG + chr3_3:43572397-43572416 Msa0453350:intron 35.0%
!! TTTTACTCTGGTGTTGGATT+TGG + chr3_3:43572403-43572422 Msa0453350:intron 35.0%
TCTTGGTTACTGTCGTAAAT+TGG + chr3_3:43572552-43572571 Msa0453350:intron 35.0%
! ATGCTAATCTTGGTCTGTTT+TGG + chr3_3:43572605-43572624 Msa0453350:intron 35.0%
!! ATGGTAACGAAGTGTTTTTC+AGG + chr3_3:43572638-43572657 Msa0453350:CDS 35.0%
!!! AAGTGTTTTTCAGGATCAAG+AGG + chr3_3:43572647-43572666 Msa0453350:CDS 35.0%
!! TCCATTGCTTTTCTCTTTGA+TGG + chr3_3:43572730-43572749 Msa0453350:CDS 35.0%
!! CCATTGCTTTTCTCTTTGAT+GGG + chr3_3:43572731-43572750 Msa0453350:CDS 35.0%
CTTCTTGTCTTCCTCAATGT+TGG - chr3_3:43570840-43570859 None:intergenic 40.0%
TGAATGCTGGAATGCTTATG+TGG + chr3_3:43571622-43571641 Msa0453350:intron 40.0%
! GTGGTATCTTGTTGATGAGT+TGG + chr3_3:43571641-43571660 Msa0453350:intron 40.0%
GTTTCCATATCACCCAAAAG+TGG - chr3_3:43571797-43571816 None:intergenic 40.0%
! TGGTTACATGGAACTAGTCT+TGG + chr3_3:43572535-43572554 Msa0453350:intron 40.0%
TGGTTACTGTCGTAAATTGG+TGG + chr3_3:43572555-43572574 Msa0453350:intron 40.0%
!! TGGTCTGTTTTGGATGTTGT+AGG + chr3_3:43572615-43572634 Msa0453350:intron 40.0%
!! CTGTTTTGGATGTTGTAGGA+TGG + chr3_3:43572619-43572638 Msa0453350:intron 40.0%
CCCATCAAAGAGAAAAGCAA+TGG - chr3_3:43572734-43572753 None:intergenic 40.0%
TCATATTCACGAACCTCATC+GGG - chr3_3:43572781-43572800 None:intergenic 40.0%
GTCATATTCACGAACCTCAT+CGG - chr3_3:43572782-43572801 None:intergenic 40.0%
TTTCAGTTGGAGATGGAAGA+TGG + chr3_3:43572890-43572909 Msa0453350:intron 40.0%
TTCAGTTGGAGATGGAAGAT+GGG + chr3_3:43572891-43572910 Msa0453350:intron 40.0%
CTTCTTGTCTTCCTCAATGT+TGG - chr3_3:43570840-43570859 None:intergenic 40.0%
TGAATGCTGGAATGCTTATG+TGG + chr3_3:43571622-43571641 Msa0453350:intron 40.0%
! GTGGTATCTTGTTGATGAGT+TGG + chr3_3:43571641-43571660 Msa0453350:intron 40.0%
GTTTCCATATCACCCAAAAG+TGG - chr3_3:43571797-43571816 None:intergenic 40.0%
! TGGTTACATGGAACTAGTCT+TGG + chr3_3:43572535-43572554 Msa0453350:intron 40.0%
TGGTTACTGTCGTAAATTGG+TGG + chr3_3:43572555-43572574 Msa0453350:intron 40.0%
!! TGGTCTGTTTTGGATGTTGT+AGG + chr3_3:43572615-43572634 Msa0453350:intron 40.0%
!! CTGTTTTGGATGTTGTAGGA+TGG + chr3_3:43572619-43572638 Msa0453350:intron 40.0%
CCCATCAAAGAGAAAAGCAA+TGG - chr3_3:43572734-43572753 None:intergenic 40.0%
TCATATTCACGAACCTCATC+GGG - chr3_3:43572781-43572800 None:intergenic 40.0%
GTCATATTCACGAACCTCAT+CGG - chr3_3:43572782-43572801 None:intergenic 40.0%
TTTCAGTTGGAGATGGAAGA+TGG + chr3_3:43572890-43572909 Msa0453350:intron 40.0%
TTCAGTTGGAGATGGAAGAT+GGG + chr3_3:43572891-43572910 Msa0453350:intron 40.0%
TCACATCAACCTCAAGGTCA+AGG + chr3_3:43570877-43570896 Msa0453350:CDS 45.0%
CACATCAACCTCAAGGTCAA+GGG + chr3_3:43570878-43570897 Msa0453350:CDS 45.0%
TGGTTTCATACACTGTCGTG+TGG - chr3_3:43571349-43571368 None:intergenic 45.0%
! CGGGTGATAGCCAAATCTTT+TGG + chr3_3:43571769-43571788 Msa0453350:intron 45.0%
!! GGTTCCACTTTTGGGTGATA+TGG + chr3_3:43571790-43571809 Msa0453350:intron 45.0%
AGAGCAGGGATAGTGTGTAT+CGG + chr3_3:43572015-43572034 Msa0453350:intron 45.0%
! TACTCTGGTGTTGGATTTGG+TGG + chr3_3:43572406-43572425 Msa0453350:intron 45.0%
TTACTGTGATCGTCAGTCTG+TGG + chr3_3:43572699-43572718 Msa0453350:CDS 45.0%
TGTCCTGTTTCAGTTGGAGA+TGG + chr3_3:43572883-43572902 Msa0453350:intron 45.0%
CTTCCATCTCCAACTGAAAC+AGG - chr3_3:43572889-43572908 None:intergenic 45.0%
TCAGTTGGAGATGGAAGATG+GGG + chr3_3:43572892-43572911 Msa0453350:intron 45.0%
TCACATCAACCTCAAGGTCA+AGG + chr3_3:43570877-43570896 Msa0453350:CDS 45.0%
CACATCAACCTCAAGGTCAA+GGG + chr3_3:43570878-43570897 Msa0453350:CDS 45.0%
TGGTTTCATACACTGTCGTG+TGG - chr3_3:43571349-43571368 None:intergenic 45.0%
! CGGGTGATAGCCAAATCTTT+TGG + chr3_3:43571769-43571788 Msa0453350:intron 45.0%
!! GGTTCCACTTTTGGGTGATA+TGG + chr3_3:43571790-43571809 Msa0453350:intron 45.0%
AGAGCAGGGATAGTGTGTAT+CGG + chr3_3:43572015-43572034 Msa0453350:intron 45.0%
! TACTCTGGTGTTGGATTTGG+TGG + chr3_3:43572406-43572425 Msa0453350:intron 45.0%
TTACTGTGATCGTCAGTCTG+TGG + chr3_3:43572699-43572718 Msa0453350:CDS 45.0%
TGTCCTGTTTCAGTTGGAGA+TGG + chr3_3:43572883-43572902 Msa0453350:intron 45.0%
CTTCCATCTCCAACTGAAAC+AGG - chr3_3:43572889-43572908 None:intergenic 45.0%
TCAGTTGGAGATGGAAGATG+GGG + chr3_3:43572892-43572911 Msa0453350:intron 45.0%
!!! TTAAAGTTTTTTTTTTTTTT+TGG + chr3_3:43571103-43571122 Msa0453350:intron 5.0%
!! TATTATCAAAAAAATATATT+TGG - chr3_3:43572828-43572847 None:intergenic 5.0%
!!! TTAAAGTTTTTTTTTTTTTT+TGG + chr3_3:43571103-43571122 Msa0453350:intron 5.0%
!! TATTATCAAAAAAATATATT+TGG - chr3_3:43572828-43572847 None:intergenic 5.0%
GAAGACAAGAAGCCAGAAGC+TGG + chr3_3:43570848-43570867 Msa0453350:CDS 50.0%
TGGTGCTCACATCAACCTCA+AGG + chr3_3:43570871-43570890 Msa0453350:CDS 50.0%
ACCTCCTGTCTGATGAAGCA+TGG - chr3_3:43572930-43572949 None:intergenic 50.0%
GAAGACAAGAAGCCAGAAGC+TGG + chr3_3:43570848-43570867 Msa0453350:CDS 50.0%
TGGTGCTCACATCAACCTCA+AGG + chr3_3:43570871-43570890 Msa0453350:CDS 50.0%
ACCTCCTGTCTGATGAAGCA+TGG - chr3_3:43572930-43572949 None:intergenic 50.0%
TGCAGCTGCTCCCAACATTG+AGG + chr3_3:43570826-43570845 Msa0453350:CDS 55.0%
GACAAGAAGCCAGAAGCTGG+TGG + chr3_3:43570851-43570870 Msa0453350:CDS 55.0%
ATGTGAGCACCACCAGCTTC+TGG - chr3_3:43570863-43570882 None:intergenic 55.0%
CAACCTCAAGGTCAAGGGTC+AGG + chr3_3:43570883-43570902 Msa0453350:CDS 55.0%
GAACCTGACCCTTGACCTTG+AGG - chr3_3:43570889-43570908 None:intergenic 55.0%
GACGCCATGCTTCATCAGAC+AGG + chr3_3:43572923-43572942 Msa0453350:CDS 55.0%
GCCATGCTTCATCAGACAGG+AGG + chr3_3:43572926-43572945 Msa0453350:CDS 55.0%
TGCAGCTGCTCCCAACATTG+AGG + chr3_3:43570826-43570845 Msa0453350:CDS 55.0%
GACAAGAAGCCAGAAGCTGG+TGG + chr3_3:43570851-43570870 Msa0453350:CDS 55.0%
ATGTGAGCACCACCAGCTTC+TGG - chr3_3:43570863-43570882 None:intergenic 55.0%
CAACCTCAAGGTCAAGGGTC+AGG + chr3_3:43570883-43570902 Msa0453350:CDS 55.0%
GAACCTGACCCTTGACCTTG+AGG - chr3_3:43570889-43570908 None:intergenic 55.0%
GACGCCATGCTTCATCAGAC+AGG + chr3_3:43572923-43572942 Msa0453350:CDS 55.0%
GCCATGCTTCATCAGACAGG+AGG + chr3_3:43572926-43572945 Msa0453350:CDS 55.0%
CATCGGGAGTCTGCTCAGCA+CGG - chr3_3:43572765-43572784 None:intergenic 60.0%
TGCTGAGCAGACTCCCGATG+AGG + chr3_3:43572765-43572784 Msa0453350:CDS 60.0%
CATCGGGAGTCTGCTCAGCA+CGG - chr3_3:43572765-43572784 None:intergenic 60.0%
TGCTGAGCAGACTCCCGATG+AGG + chr3_3:43572765-43572784 Msa0453350:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 43570815 43572961 43570815 ID=Msa0453350;Name=Msa0453350
chr3_3 mRNA 43570815 43572961 43570815 ID=Msa0453350-mRNA-1;Parent=Msa0453350;Name=Msa0453350-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|3|0|101
chr3_3 exon 43570815 43570904 43570815 ID=Msa0453350-mRNA-1:exon:7958;Parent=Msa0453350-mRNA-1
chr3_3 exon 43572637 43572786 43572637 ID=Msa0453350-mRNA-1:exon:7959;Parent=Msa0453350-mRNA-1
chr3_3 exon 43572896 43572961 43572896 ID=Msa0453350-mRNA-1:exon:7960;Parent=Msa0453350-mRNA-1
chr3_3 CDS 43570815 43570904 43570815 ID=Msa0453350-mRNA-1:cds;Parent=Msa0453350-mRNA-1
chr3_3 CDS 43572637 43572786 43572637 ID=Msa0453350-mRNA-1:cds;Parent=Msa0453350-mRNA-1
chr3_3 CDS 43572896 43572961 43572896 ID=Msa0453350-mRNA-1:cds;Parent=Msa0453350-mRNA-1
Gene Sequence

>Msa0453350

ATGTCGTCAGGTGCAGCTGCTCCCAACATTGAGGAAGACAAGAAGCCAGAAGCTGGTGGTGCTCACATCAACCTCAAGGTCAAGGGTCAGGATGGTAACGAAGTGTTTTTCAGGATCAAGAGGAACACTCAATTGAAAAAGCTTATGAATGCTTACTGTGATCGTCAGTCTGTGGATTTCAACTCCATTGCTTTTCTCTTTGATGGGCGTCGTCTCCGTGCTGAGCAGACTCCCGATGAGTTGGAGATGGAAGATGGGGATGAAATTGACGCCATGCTTCATCAGACAGGAGGTTCTGTTGTCTGA

Protein sequence

>Msa0453350

MSSGAAAPNIEEDKKPEAGGAHINLKVKGQDGNEVFFRIKRNTQLKKLMNAYCDRQSVDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSVV*