Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0959000 | G7KMW6 | 92.308 | 130 | 10 | 0 | 1 | 130 | 1 | 130 | 2.47e-73 | 224 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032260 | Msa0959000 | 0.812928 | 3.311638e-51 | -8.615850e-47 |
| Msa0650920 | Msa0959000 | 0.802359 | 5.824388e-49 | -8.615850e-47 |
| Msa0774540 | Msa0959000 | 0.806795 | 6.914065e-50 | -8.615850e-47 |
| Msa0127310 | Msa0959000 | 0.806655 | 7.401239e-50 | -8.615850e-47 |
| Msa0191050 | Msa0959000 | 0.815337 | 9.737347e-52 | -8.615850e-47 |
| Msa0231880 | Msa0959000 | 0.804327 | 2.278504e-49 | -8.615850e-47 |
| Msa0233350 | Msa0959000 | 0.815263 | 1.011170e-51 | -8.615850e-47 |
| Msa0236270 | Msa0959000 | 0.803362 | 3.613958e-49 | -8.615850e-47 |
| Msa0369050 | Msa0959000 | 0.804649 | 1.952252e-49 | -8.615850e-47 |
| Msa0376300 | Msa0959000 | 0.805836 | 1.101229e-49 | -8.615850e-47 |
| Msa0465550 | Msa0959000 | 0.803208 | 3.889900e-49 | -8.615850e-47 |
| Msa0262310 | Msa0959000 | 0.815352 | 9.661154e-52 | -8.615850e-47 |
| Msa0298700 | Msa0959000 | 0.809250 | 2.076564e-50 | -8.615850e-47 |
| Msa0337650 | Msa0959000 | 0.806253 | 8.998851e-50 | -8.615850e-47 |
| Msa0508590 | Msa0959000 | 0.809368 | 1.958665e-50 | -8.615850e-47 |
| Msa0508630 | Msa0959000 | 0.818941 | 1.507051e-52 | -8.615850e-47 |
| Msa0944190 | Msa0959000 | 0.808146 | 3.574706e-50 | -8.615850e-47 |
| Msa0959000 | Msa1171870 | 0.803586 | 3.248602e-49 | -8.615850e-47 |
| Msa0959000 | Msa1304820 | 0.800711 | 1.267801e-48 | -8.615850e-47 |
| Msa0959000 | Msa1306430 | 0.805758 | 1.143750e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0959000 | MtrunA17_Chr6g0476721 | 92.308 | 130 | 10 | 0 | 1 | 130 | 1 | 130 | 4.75e-77 | 224 |
| Msa0959000 | MtrunA17_Chr5g0394191 | 81.818 | 99 | 18 | 0 | 32 | 130 | 1 | 99 | 6.38e-54 | 164 |
| Msa0959000 | MtrunA17_Chr6g0476661 | 56.667 | 90 | 39 | 0 | 36 | 125 | 6 | 95 | 1.63e-31 | 107 |
| Msa0959000 | MtrunA17_Chr1g0188281 | 55.556 | 90 | 40 | 0 | 36 | 125 | 40 | 129 | 3.60e-31 | 108 |
| Msa0959000 | MtrunA17_Chr7g0262501 | 46.512 | 86 | 46 | 0 | 40 | 125 | 7 | 92 | 3.17e-24 | 89.7 |
| Msa0959000 | MtrunA17_Chr1g0183081 | 44.186 | 86 | 48 | 0 | 40 | 125 | 11 | 96 | 1.27e-21 | 82.8 |
| Msa0959000 | MtrunA17_Chr1g0193951 | 33.333 | 93 | 62 | 0 | 36 | 128 | 45 | 137 | 7.16e-13 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0959000 | AT4G10280.1 | 47.581 | 124 | 55 | 3 | 16 | 129 | 17 | 140 | 3.26e-32 | 111 |
| Msa0959000 | AT4G10300.1 | 52.632 | 95 | 45 | 0 | 34 | 128 | 40 | 134 | 5.84e-30 | 105 |
| Msa0959000 | AT4G10290.1 | 46.939 | 98 | 49 | 1 | 36 | 130 | 16 | 113 | 6.30e-24 | 89.7 |
| Msa0959000 | AT3G04300.1 | 48.810 | 84 | 43 | 0 | 42 | 125 | 5 | 88 | 8.49e-22 | 83.6 |
| Msa0959000 | AT4G28703.1 | 41.935 | 93 | 45 | 1 | 42 | 125 | 10 | 102 | 1.14e-19 | 78.2 |
| Msa0959000 | AT2G32180.1 | 34.409 | 93 | 61 | 0 | 36 | 128 | 42 | 134 | 1.90e-14 | 65.9 |
| Msa0959000 | AT2G32180.2 | 34.409 | 93 | 61 | 0 | 36 | 128 | 42 | 134 | 1.90e-14 | 65.9 |
| Msa0959000 | AT2G32650.2 | 34.409 | 93 | 61 | 0 | 36 | 128 | 42 | 134 | 2.07e-14 | 65.5 |
| Msa0959000 | AT2G32650.1 | 34.409 | 93 | 61 | 0 | 36 | 128 | 42 | 134 | 2.07e-14 | 65.5 |
Find 32 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGACATCCTATGAAGTATT+TGG | 0.192997 | 6_3:+75343248 | Msa0959000:CDS |
| AGTATTTCATTTGAATTATC+TGG | 0.232721 | 6_3:+75346372 | Msa0959000:three_prime_UTR |
| CTTTCACTTCCATTAGATTA+TGG | 0.244585 | 6_3:+75346337 | Msa0959000:three_prime_UTR |
| AACACCAAGCTGAATGAGTT+TGG | 0.300249 | 6_3:-75343300 | None:intergenic |
| ATTAAGCAACAAGAGTTATA+AGG | 0.320163 | 6_3:-75346231 | None:intergenic |
| ATGTAATGTTCATTCCTTTA+GGG | 0.320882 | 6_3:-75346156 | None:intergenic |
| CATGTAATGTTCATTCCTTT+AGG | 0.324667 | 6_3:-75346157 | None:intergenic |
| TAATGGAAGTGAAAGCTTAA+AGG | 0.325458 | 6_3:-75346329 | None:intergenic |
| TAAGTGATTATCACATACTA+TGG | 0.366152 | 6_3:+75346281 | Msa0959000:three_prime_UTR |
| GTTACTGTTGAAAAGTCAAT+TGG | 0.386921 | 6_3:+75346097 | Msa0959000:CDS |
| CTTGACTCCAAATACTTCAT+AGG | 0.387775 | 6_3:-75343255 | None:intergenic |
| TTCAGCTTGGTGTTTCAACT+TGG | 0.426188 | 6_3:+75343309 | Msa0959000:CDS |
| AGTGATAAACGTTGCACAAT+GGG | 0.430031 | 6_3:-75343161 | None:intergenic |
| ATAATATATCCATAATCTAA+TGG | 0.433231 | 6_3:-75346346 | None:intergenic |
| GATGTCATGGAAGATTCCTT+TGG | 0.456311 | 6_3:-75343233 | None:intergenic |
| ATGGCTTATATAATTGATGT+AGG | 0.463204 | 6_3:+75346300 | Msa0959000:three_prime_UTR |
| CTAAAGGAATGAACATTACA+TGG | 0.471661 | 6_3:+75346158 | Msa0959000:CDS |
| GAAACAATGTATATACTTGA+AGG | 0.472797 | 6_3:+75346064 | Msa0959000:CDS |
| AAACTATAGTGCTTCTTCAC+AGG | 0.477631 | 6_3:-75346193 | None:intergenic |
| GTTTCAGTTTCTCATGCCAA+AGG | 0.543305 | 6_3:+75343217 | Msa0959000:CDS |
| CATGAGAAACTGAAACAAGA+TGG | 0.552975 | 6_3:-75343210 | None:intergenic |
| AAATACTTCATAGGATGTCA+TGG | 0.560683 | 6_3:-75343246 | None:intergenic |
| TGGCTTATATAATTGATGTA+GGG | 0.564987 | 6_3:+75346301 | Msa0959000:three_prime_UTR |
| TCTTCTTCTTCAAATGACCA+TGG | 0.569053 | 6_3:-75346043 | None:intergenic |
| ATTTCATTTGAATTATCTGG+TGG | 0.570254 | 6_3:+75346375 | Msa0959000:three_prime_UTR |
| CAATCCAAACTCATTCAGCT+TGG | 0.581004 | 6_3:+75343296 | Msa0959000:CDS |
| AACAAGATGGAGAGAATGAG+AGG | 0.594788 | 6_3:-75343197 | None:intergenic |
| TGAACATTCAACAGGTGGGA+AGG | 0.597184 | 6_3:+75346004 | Msa0959000:intron |
| ACATTCAACAGGTGGGAAGG+TGG | 0.637553 | 6_3:+75346007 | Msa0959000:intron |
| TAAAGGAATGAACATTACAT+GGG | 0.639073 | 6_3:+75346159 | Msa0959000:CDS |
| TGAATGAGTTTGGATTGTGA+TGG | 0.654771 | 6_3:-75343290 | None:intergenic |
| GAGTGATAAACGTTGCACAA+TGG | 0.667436 | 6_3:-75343162 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTAAAATTATTAA+CGG | - | chr6_3:75343516-75343535 | None:intergenic | 0.0% |
| !!! | AATTTATTTTGTAATTTAGA+TGG | + | chr6_3:75343903-75343922 | Msa0959000:intron | 10.0% |
| !! | GAAAAATACAAACAATAATT+TGG | + | chr6_3:75343125-75343144 | Msa0959000:five_prime_UTR | 15.0% |
| !!! | TTTTTGAAATGACAAATTTT+GGG | + | chr6_3:75343448-75343467 | Msa0959000:intron | 15.0% |
| !!! | TTGATCATTTTTTTAGTTTT+AGG | + | chr6_3:75343652-75343671 | Msa0959000:intron | 15.0% |
| !!! | TTTAACAGTTATTATCATTT+TGG | + | chr6_3:75343715-75343734 | Msa0959000:intron | 15.0% |
| !! | TTTAAAAGAAATACATAACT+AGG | - | chr6_3:75343765-75343784 | None:intergenic | 15.0% |
| !!! | TATATTTTCCTTATGTTTAT+TGG | + | chr6_3:75344251-75344270 | Msa0959000:intron | 15.0% |
| !! | TGATAAGATTAATCTTAATT+AGG | + | chr6_3:75344542-75344561 | Msa0959000:intron | 15.0% |
| !!! | AAATTATTTTGGTAAAAAAC+AGG | + | chr6_3:75344760-75344779 | Msa0959000:intron | 15.0% |
| !!! | AATTATTTTGGTAAAAAACA+GGG | + | chr6_3:75344761-75344780 | Msa0959000:intron | 15.0% |
| !! | TAACCAAAATAAATTTCAAA+GGG | - | chr6_3:75344866-75344885 | None:intergenic | 15.0% |
| !! | ATAACCAAAATAAATTTCAA+AGG | - | chr6_3:75344867-75344886 | None:intergenic | 15.0% |
| !!! | ATATAGATTTTTAAAGTTGA+TGG | + | chr6_3:75344922-75344941 | Msa0959000:intron | 15.0% |
| !!! | TATAGATTTTTAAAGTTGAT+GGG | + | chr6_3:75344923-75344942 | Msa0959000:intron | 15.0% |
| !! | ATAAAAGAAGAAAAAGAAAA+GGG | - | chr6_3:75344994-75345013 | None:intergenic | 15.0% |
| !! | TATAAAAGAAGAAAAAGAAA+AGG | - | chr6_3:75344995-75345014 | None:intergenic | 15.0% |
| !! | ATAATATATCCATAATCTAA+TGG | - | chr6_3:75346349-75346368 | None:intergenic | 15.0% |
| !!! | AATCATTTTTTGCATTTTCT+TGG | + | chr6_3:75343377-75343396 | Msa0959000:intron | 20.0% |
| !!! | CTTTTTGAAATGACAAATTT+TGG | + | chr6_3:75343447-75343466 | Msa0959000:intron | 20.0% |
| !!! | TTTTCTGCATAACAAATTTT+GGG | + | chr6_3:75343794-75343813 | Msa0959000:intron | 20.0% |
| !!! | TATTTTGTAATTTAGATGGT+TGG | + | chr6_3:75343907-75343926 | Msa0959000:intron | 20.0% |
| !!! | GAAGTTTTATTTCTACATTT+TGG | + | chr6_3:75344211-75344230 | Msa0959000:intron | 20.0% |
| !!! | TGTACTACTTGAAATTATTT+TGG | + | chr6_3:75344749-75344768 | Msa0959000:intron | 20.0% |
| !!! | TTTGGTTATTTTTATGATAG+AGG | + | chr6_3:75344878-75344897 | Msa0959000:intron | 20.0% |
| !!! | GATATGTTTTAAAGTTGATT+TGG | - | chr6_3:75345101-75345120 | None:intergenic | 20.0% |
| !!! | ATCAACTTTAAAACATATCT+CGG | + | chr6_3:75345102-75345121 | Msa0959000:intron | 20.0% |
| !! | ATTGGAGATTCAAATTAATA+GGG | + | chr6_3:75345383-75345402 | Msa0959000:intron | 20.0% |
| !! | AGTATTTCATTTGAATTATC+TGG | + | chr6_3:75346372-75346391 | Msa0959000:three_prime_UTR | 20.0% |
| !!! | ACATATTTAATCCCTTTTTT+TGG | - | chr6_3:75346428-75346447 | None:intergenic | 20.0% |
| ! | TTCAAACGAAACACATTAAT+TGG | - | chr6_3:75343419-75343438 | None:intergenic | 25.0% |
| !! | TTCAGTGTAATTAAAAGTGT+CGG | + | chr6_3:75343543-75343562 | Msa0959000:intron | 25.0% |
| !!! | TTTTAGGCTTATATTTGTTG+TGG | + | chr6_3:75343668-75343687 | Msa0959000:intron | 25.0% |
| !!! | TTTAGGCTTATATTTGTTGT+GGG | + | chr6_3:75343669-75343688 | Msa0959000:intron | 25.0% |
| !! | CTTTTCTGCATAACAAATTT+TGG | + | chr6_3:75343793-75343812 | Msa0959000:intron | 25.0% |
| ! | TTTATACTCGTATTTGTAGT+AGG | + | chr6_3:75343835-75343854 | Msa0959000:intron | 25.0% |
| ! | TTATACTCGTATTTGTAGTA+GGG | + | chr6_3:75343836-75343855 | Msa0959000:intron | 25.0% |
| !! | TGGTAAGTTTTTCTGTTTTA+AGG | + | chr6_3:75343927-75343946 | Msa0959000:intron | 25.0% |
| ! | GGTTAAAAGTTAAAACACTA+GGG | - | chr6_3:75344165-75344184 | None:intergenic | 25.0% |
| ! | AGGTTAAAAGTTAAAACACT+AGG | - | chr6_3:75344166-75344185 | None:intergenic | 25.0% |
| ! | TCCTTATGTTTATTGGAAAA+AGG | + | chr6_3:75344258-75344277 | Msa0959000:intron | 25.0% |
| !! | ATGTATGTTTGTAGTTTTTC+TGG | + | chr6_3:75344385-75344404 | Msa0959000:intron | 25.0% |
| !! | TTAATTAGGATCTACTGTTT+TGG | + | chr6_3:75344556-75344575 | Msa0959000:intron | 25.0% |
| !!! | GATGGTATTTTAATGCATTT+TGG | + | chr6_3:75344580-75344599 | Msa0959000:intron | 25.0% |
| ! | AATCTCTCACAAGTTATTAT+GGG | - | chr6_3:75345311-75345330 | None:intergenic | 25.0% |
| ! | AAATCTCTCACAAGTTATTA+TGG | - | chr6_3:75345312-75345331 | None:intergenic | 25.0% |
| ! | GATTGGAGATTCAAATTAAT+AGG | + | chr6_3:75345382-75345401 | Msa0959000:intron | 25.0% |
| !!! | GATGAAATGATTTAGAGTTT+TGG | - | chr6_3:75345586-75345605 | None:intergenic | 25.0% |
| ! | CATGCTAAATAACCATAAAT+AGG | + | chr6_3:75345801-75345820 | Msa0959000:intron | 25.0% |
| ! | AATAACCATAAATAGGTTTG+AGG | + | chr6_3:75345808-75345827 | Msa0959000:intron | 25.0% |
| ! | TCGAATGAAATATGAAAAGA+CGG | - | chr6_3:75345953-75345972 | None:intergenic | 25.0% |
| !! | AATGACCATGGAATTTTTAA+TGG | - | chr6_3:75346034-75346053 | None:intergenic | 25.0% |
| ! | GAAACAATGTATATACTTGA+AGG | + | chr6_3:75346064-75346083 | Msa0959000:CDS | 25.0% |
| !!! | TCAATTGGATCTTTTGAAAT+TGG | + | chr6_3:75346112-75346131 | Msa0959000:CDS | 25.0% |
| !!! | AATTTAGTTGTTTTCCCTAA+AGG | + | chr6_3:75346142-75346161 | Msa0959000:CDS | 25.0% |
| ! | ATGTAATGTTCATTCCTTTA+GGG | - | chr6_3:75346159-75346178 | None:intergenic | 25.0% |
| ! | TAAAGGAATGAACATTACAT+GGG | + | chr6_3:75346159-75346178 | Msa0959000:CDS | 25.0% |
| ! | ATTAAGCAACAAGAGTTATA+AGG | - | chr6_3:75346234-75346253 | None:intergenic | 25.0% |
| ! | TAAGTGATTATCACATACTA+TGG | + | chr6_3:75346281-75346300 | Msa0959000:three_prime_UTR | 25.0% |
| ! | ATGGCTTATATAATTGATGT+AGG | + | chr6_3:75346300-75346319 | Msa0959000:three_prime_UTR | 25.0% |
| ! | TGGCTTATATAATTGATGTA+GGG | + | chr6_3:75346301-75346320 | Msa0959000:three_prime_UTR | 25.0% |
| ! | ATTTCATTTGAATTATCTGG+TGG | + | chr6_3:75346375-75346394 | Msa0959000:three_prime_UTR | 25.0% |
| ! | TATCATTTGATGCCAAAAAA+AGG | + | chr6_3:75346413-75346432 | Msa0959000:three_prime_UTR | 25.0% |
| ! | ATCATTTGATGCCAAAAAAA+GGG | + | chr6_3:75346414-75346433 | Msa0959000:three_prime_UTR | 25.0% |
| AAATACTTCATAGGATGTCA+TGG | - | chr6_3:75343249-75343268 | None:intergenic | 30.0% | |
| ! | ATGACATCCTATGAAGTATT+TGG | + | chr6_3:75343248-75343267 | Msa0959000:CDS | 30.0% |
| GAAGAGAAAGAAAGTTACTT+AGG | - | chr6_3:75343335-75343354 | None:intergenic | 30.0% | |
| AAACGAAACACATTAATTGG+CGG | - | chr6_3:75343416-75343435 | None:intergenic | 30.0% | |
| ACTAGGTTACATATAATCCA+AGG | + | chr6_3:75343601-75343620 | Msa0959000:intron | 30.0% | |
| !! | TTAGGCTTATATTTGTTGTG+GGG | + | chr6_3:75343670-75343689 | Msa0959000:intron | 30.0% |
| TATACTCGTATTTGTAGTAG+GGG | + | chr6_3:75343837-75343856 | Msa0959000:intron | 30.0% | |
| TTCCTTGAAAAACTAGTGTT+TGG | + | chr6_3:75343967-75343986 | Msa0959000:intron | 30.0% | |
| AGTCATGATTCAATTAGTGT+TGG | - | chr6_3:75344010-75344029 | None:intergenic | 30.0% | |
| ACGCGTAATGTTTGAAAATT+TGG | - | chr6_3:75344061-75344080 | None:intergenic | 30.0% | |
| ! | AATGCACACTTCTAAAAACA+TGG | + | chr6_3:75344106-75344125 | Msa0959000:intron | 30.0% |
| !!! | TTTTGGCTCTAGTGATTTTA+TGG | + | chr6_3:75344228-75344247 | Msa0959000:intron | 30.0% |
| ! | GCCTTTTTCCAATAAACATA+AGG | - | chr6_3:75344262-75344281 | None:intergenic | 30.0% |
| TACAAAGGAACACTATACTT+TGG | + | chr6_3:75344348-75344367 | Msa0959000:intron | 30.0% | |
| !!! | TTTTCTGGAATCCAAACATA+CGG | + | chr6_3:75344400-75344419 | Msa0959000:intron | 30.0% |
| ! | GCATTTTGGACTTATATTGA+AGG | + | chr6_3:75344594-75344613 | Msa0959000:intron | 30.0% |
| AATAGAAGCTTTCAGGAAAA+AGG | + | chr6_3:75344693-75344712 | Msa0959000:intron | 30.0% | |
| !!! | CTGCCCTTTGAAATTTATTT+TGG | + | chr6_3:75344860-75344879 | Msa0959000:intron | 30.0% |
| !!! | TTTTTAAAGTTGATGGGAAG+TGG | + | chr6_3:75344929-75344948 | Msa0959000:intron | 30.0% |
| !!! | TTTTAAAGTTGATGGGAAGT+GGG | + | chr6_3:75344930-75344949 | Msa0959000:intron | 30.0% |
| TTATTATGGGTACTACTACA+GGG | - | chr6_3:75345298-75345317 | None:intergenic | 30.0% | |
| TTTCTTTCATTCCATTGTTC+TGG | - | chr6_3:75345335-75345354 | None:intergenic | 30.0% | |
| !! | TTTTGGTTGTTGTAGAGTTT+AGG | - | chr6_3:75345569-75345588 | None:intergenic | 30.0% |
| TTGATTGATATGCTTGATAG+TGG | + | chr6_3:75345659-75345678 | Msa0959000:intron | 30.0% | |
| ! | GGAAGTTCAAAGTATTATGA+GGG | + | chr6_3:75345700-75345719 | Msa0959000:intron | 30.0% |
| ! | GAAGTTCAAAGTATTATGAG+GGG | + | chr6_3:75345701-75345720 | Msa0959000:intron | 30.0% |
| ! | TGCATCTAGTTTAGAGAATT+TGG | + | chr6_3:75345741-75345760 | Msa0959000:intron | 30.0% |
| ! | ATCTAGTTTAGAGAATTTGG+TGG | + | chr6_3:75345744-75345763 | Msa0959000:intron | 30.0% |
| ! | TCTAGTTTAGAGAATTTGGT+GGG | + | chr6_3:75345745-75345764 | Msa0959000:intron | 30.0% |
| GTTACTGTTGAAAAGTCAAT+TGG | + | chr6_3:75346097-75346116 | Msa0959000:CDS | 30.0% | |
| !!! | ATTGGATCTTTTGAAATTGG+AGG | + | chr6_3:75346115-75346134 | Msa0959000:CDS | 30.0% |
| CATGTAATGTTCATTCCTTT+AGG | - | chr6_3:75346160-75346179 | None:intergenic | 30.0% | |
| CTAAAGGAATGAACATTACA+TGG | + | chr6_3:75346158-75346177 | Msa0959000:CDS | 30.0% | |
| TAATGGAAGTGAAAGCTTAA+AGG | - | chr6_3:75346332-75346351 | None:intergenic | 30.0% | |
| CTTTCACTTCCATTAGATTA+TGG | + | chr6_3:75346337-75346356 | Msa0959000:three_prime_UTR | 30.0% | |
| AGTGATAAACGTTGCACAAT+GGG | - | chr6_3:75343164-75343183 | None:intergenic | 35.0% | |
| CATGAGAAACTGAAACAAGA+TGG | - | chr6_3:75343213-75343232 | None:intergenic | 35.0% | |
| CTTGACTCCAAATACTTCAT+AGG | - | chr6_3:75343258-75343277 | None:intergenic | 35.0% | |
| TGAATGAGTTTGGATTGTGA+TGG | - | chr6_3:75343293-75343312 | None:intergenic | 35.0% | |
| TGATCTATGAAGCATGGATA+CGG | + | chr6_3:75343474-75343493 | Msa0959000:intron | 35.0% | |
| !! | TAGGCTTATATTTGTTGTGG+GGG | + | chr6_3:75343671-75343690 | Msa0959000:intron | 35.0% |
| ATACTCGTATTTGTAGTAGG+GGG | + | chr6_3:75343838-75343857 | Msa0959000:intron | 35.0% | |
| !!! | CTCCAAACACTAGTTTTTCA+AGG | - | chr6_3:75343972-75343991 | None:intergenic | 35.0% |
| CTTGAAAAACTAGTGTTTGG+AGG | + | chr6_3:75343970-75343989 | Msa0959000:intron | 35.0% | |
| ! | TGATTCAATTAGTGTTGGAG+TGG | - | chr6_3:75344005-75344024 | None:intergenic | 35.0% |
| CTAATTGAATCATGACTGAG+AGG | + | chr6_3:75344013-75344032 | Msa0959000:intron | 35.0% | |
| !!! | ATGGAGTTATTTTAGTAGCG+AGG | + | chr6_3:75344125-75344144 | Msa0959000:intron | 35.0% |
| !!! | TGGAGTTATTTTAGTAGCGA+GGG | + | chr6_3:75344126-75344145 | Msa0959000:intron | 35.0% |
| !!! | AACCTTATTTTGTGCTGCAT+TGG | + | chr6_3:75344181-75344200 | Msa0959000:intron | 35.0% |
| !!! | ACCTTATTTTGTGCTGCATT+GGG | + | chr6_3:75344182-75344201 | Msa0959000:intron | 35.0% |
| ! | GTAGTGTTTTACCGTATGTT+TGG | - | chr6_3:75344414-75344433 | None:intergenic | 35.0% |
| ! | TGGACTTATATTGAAGGTGT+TGG | + | chr6_3:75344600-75344619 | Msa0959000:intron | 35.0% |
| TGATCTCTAGATATCTGAAG+AGG | + | chr6_3:75344644-75344663 | Msa0959000:intron | 35.0% | |
| GTAGCATAATAGAAGCTTTC+AGG | + | chr6_3:75344686-75344705 | Msa0959000:intron | 35.0% | |
| ATAAATTTCAAAGGGCAGAC+CGG | - | chr6_3:75344858-75344877 | None:intergenic | 35.0% | |
| ! | CTTCTTTTATATCACTGACC+AGG | + | chr6_3:75345004-75345023 | Msa0959000:intron | 35.0% |
| AATCAAGAGATCTTGACCAT+TGG | + | chr6_3:75345043-75345062 | Msa0959000:intron | 35.0% | |
| ! | ACAGTCTTATCTTCATCCAA+TGG | - | chr6_3:75345062-75345081 | None:intergenic | 35.0% |
| ! | AGAGATTCCAGATCCATTTT+AGG | + | chr6_3:75345180-75345199 | Msa0959000:intron | 35.0% |
| !! | ATTCCAGATCCATTTTAGGT+TGG | + | chr6_3:75345184-75345203 | Msa0959000:intron | 35.0% |
| ACTGTCATGACTTGACTTAT+CGG | - | chr6_3:75345210-75345229 | None:intergenic | 35.0% | |
| TAGCTTAGTACCAAAGTTAG+GGG | - | chr6_3:75345275-75345294 | None:intergenic | 35.0% | |
| GTAGCTTAGTACCAAAGTTA+GGG | - | chr6_3:75345276-75345295 | None:intergenic | 35.0% | |
| GTTATTATGGGTACTACTAC+AGG | - | chr6_3:75345299-75345318 | None:intergenic | 35.0% | |
| ! | CCATGAAGAGATACACATTT+TGG | - | chr6_3:75345363-75345382 | None:intergenic | 35.0% |
| CCAAAATGTGTATCTCTTCA+TGG | + | chr6_3:75345360-75345379 | Msa0959000:intron | 35.0% | |
| ATGTGTATCTCTTCATGGAT+TGG | + | chr6_3:75345365-75345384 | Msa0959000:intron | 35.0% | |
| TTGTGCGCAAATTGAAGTTA+TGG | + | chr6_3:75345613-75345632 | Msa0959000:intron | 35.0% | |
| TACTTTGAACTTCCCTGATA+TGG | - | chr6_3:75345694-75345713 | None:intergenic | 35.0% | |
| ! | GGGAAGTTCAAAGTATTATG+AGG | + | chr6_3:75345699-75345718 | Msa0959000:intron | 35.0% |
| TCTCTAAACTAGATGCAGTA+GGG | - | chr6_3:75345738-75345757 | None:intergenic | 35.0% | |
| TTCTCTAAACTAGATGCAGT+AGG | - | chr6_3:75345739-75345758 | None:intergenic | 35.0% | |
| ! | TTTCATCTCATTTTCACCGT+CGG | + | chr6_3:75345847-75345866 | Msa0959000:intron | 35.0% |
| GTTTAACAACTATACACCGA+CGG | - | chr6_3:75345866-75345885 | None:intergenic | 35.0% | |
| AATCTGTCTGAACATTCAAC+AGG | + | chr6_3:75345996-75346015 | Msa0959000:intron | 35.0% | |
| GTGGTCCATTAAAAATTCCA+TGG | + | chr6_3:75346026-75346045 | Msa0959000:CDS | 35.0% | |
| TCTTCTTCTTCAAATGACCA+TGG | - | chr6_3:75346046-75346065 | None:intergenic | 35.0% | |
| AAACTATAGTGCTTCTTCAC+AGG | - | chr6_3:75346196-75346215 | None:intergenic | 35.0% | |
| GAGTGATAAACGTTGCACAA+TGG | - | chr6_3:75343165-75343184 | None:intergenic | 40.0% | |
| AACAAGATGGAGAGAATGAG+AGG | - | chr6_3:75343200-75343219 | None:intergenic | 40.0% | |
| GTTTCAGTTTCTCATGCCAA+AGG | + | chr6_3:75343217-75343236 | Msa0959000:CDS | 40.0% | |
| GATGTCATGGAAGATTCCTT+TGG | - | chr6_3:75343236-75343255 | None:intergenic | 40.0% | |
| CAATCCAAACTCATTCAGCT+TGG | + | chr6_3:75343296-75343315 | Msa0959000:CDS | 40.0% | |
| AACACCAAGCTGAATGAGTT+TGG | - | chr6_3:75343303-75343322 | None:intergenic | 40.0% | |
| !! | TTCAGCTTGGTGTTTCAACT+TGG | + | chr6_3:75343309-75343328 | Msa0959000:CDS | 40.0% |
| CACGATACATGTCTAACACT+AGG | + | chr6_3:75343584-75343603 | Msa0959000:intron | 40.0% | |
| TATGAAGTATGGACACTCCT+TGG | - | chr6_3:75343621-75343640 | None:intergenic | 40.0% | |
| !! | AAGGAGTGTCCATACTTCAT+AGG | + | chr6_3:75343620-75343639 | Msa0959000:intron | 40.0% |
| GTCCATACTTCATAGGTCTT+AGG | + | chr6_3:75343627-75343646 | Msa0959000:intron | 40.0% | |
| GACCTAAGACCTATGAAGTA+TGG | - | chr6_3:75343632-75343651 | None:intergenic | 40.0% | |
| !! | AGGCTTATATTTGTTGTGGG+GGG | + | chr6_3:75343672-75343691 | Msa0959000:intron | 40.0% |
| !!! | AGTTATTTTAGTAGCGAGGG+CGG | + | chr6_3:75344129-75344148 | Msa0959000:intron | 40.0% |
| TCCCAATGCAGCACAAAATA+AGG | - | chr6_3:75344186-75344205 | None:intergenic | 40.0% | |
| ! | CAAACGTGTGCTTGTTACAA+AGG | + | chr6_3:75344333-75344352 | Msa0959000:intron | 40.0% |
| !!! | AGGATCTACTGTTTTGGTGA+TGG | + | chr6_3:75344562-75344581 | Msa0959000:intron | 40.0% |
| ACTGCGTACAATACACCAAT+TGG | + | chr6_3:75344788-75344807 | Msa0959000:intron | 40.0% | |
| CGTACAATACACCAATTGGT+GGG | + | chr6_3:75344792-75344811 | Msa0959000:intron | 40.0% | |
| ACTTATCGGCCAACCTAAAA+TGG | - | chr6_3:75345196-75345215 | None:intergenic | 40.0% | |
| ACAGTATGCTGCTGAGTTAA+AGG | + | chr6_3:75345225-75345244 | Msa0959000:intron | 40.0% | |
| TTAGGGGAAGGATTTGAGAA+AGG | - | chr6_3:75345259-75345278 | None:intergenic | 40.0% | |
| TCAAATCCTTCCCCTAACTT+TGG | + | chr6_3:75345262-75345281 | Msa0959000:intron | 40.0% | |
| TTAGTACCAAAGTTAGGGGA+AGG | - | chr6_3:75345271-75345290 | None:intergenic | 40.0% | |
| GGTAGCTTAGTACCAAAGTT+AGG | - | chr6_3:75345277-75345296 | None:intergenic | 40.0% | |
| GTGAGAGATTTCCAGAACAA+TGG | + | chr6_3:75345321-75345340 | Msa0959000:intron | 40.0% | |
| TGGATGTGCAATCCATATCA+GGG | + | chr6_3:75345679-75345698 | Msa0959000:intron | 40.0% | |
| TGCAAGCGCGTATTACTTTA+AGG | - | chr6_3:75345781-75345800 | None:intergenic | 40.0% | |
| GTCAGCCTCAAACCTATTTA+TGG | - | chr6_3:75345816-75345835 | None:intergenic | 40.0% | |
| TGTCTGAACATTCAACAGGT+GGG | + | chr6_3:75346000-75346019 | Msa0959000:intron | 40.0% | |
| !!! | GGATCTTTTGAAATTGGAGG+TGG | + | chr6_3:75346118-75346137 | Msa0959000:CDS | 40.0% |
| GGGTCTTGATCTATGAAGCA+TGG | + | chr6_3:75343468-75343487 | Msa0959000:intron | 45.0% | |
| TGAAGCATGGATACGGACAT+CGG | + | chr6_3:75343481-75343500 | Msa0959000:intron | 45.0% | |
| !!! | GTTATTTTAGTAGCGAGGGC+GGG | + | chr6_3:75344130-75344149 | Msa0959000:intron | 45.0% |
| ! | AACGTGCACATCGACTATAG+AGG | - | chr6_3:75344303-75344322 | None:intergenic | 45.0% |
| CTATAGTCGATGTGCACGTT+TGG | + | chr6_3:75344303-75344322 | Msa0959000:intron | 45.0% | |
| GCGTACAATACACCAATTGG+TGG | + | chr6_3:75344791-75344810 | Msa0959000:intron | 45.0% | |
| AACTCTGTATGTGTCGCATG+AGG | - | chr6_3:75344969-75344988 | None:intergenic | 45.0% | |
| GTGGATGTGCAATCCATATC+AGG | + | chr6_3:75345678-75345697 | Msa0959000:intron | 45.0% | |
| CTGTCTGAACATTCAACAGG+TGG | + | chr6_3:75345999-75346018 | Msa0959000:intron | 45.0% | |
| TGAACATTCAACAGGTGGGA+AGG | + | chr6_3:75346004-75346023 | Msa0959000:intron | 45.0% | |
| CTCGTATTTGTAGTAGGGGG+TGG | + | chr6_3:75343841-75343860 | Msa0959000:intron | 50.0% | |
| GGTGGCAATAGCACGTTTCT+GGG | + | chr6_3:75343859-75343878 | Msa0959000:intron | 50.0% | |
| GTGGCAATAGCACGTTTCTG+GGG | + | chr6_3:75343860-75343879 | Msa0959000:intron | 50.0% | |
| CATATGCAGGGTCCAAGAAG+GGG | - | chr6_3:75344819-75344838 | None:intergenic | 50.0% | |
| GCATATGCAGGGTCCAAGAA+GGG | - | chr6_3:75344820-75344839 | None:intergenic | 50.0% | |
| CTTCTTGGACCCTGCATATG+CGG | + | chr6_3:75344819-75344838 | Msa0959000:intron | 50.0% | |
| TTCTTGGACCCTGCATATGC+GGG | + | chr6_3:75344820-75344839 | Msa0959000:intron | 50.0% | |
| CTAAAGCTCCCGCATATGCA+GGG | - | chr6_3:75344831-75344850 | None:intergenic | 50.0% | |
| ACTAAAGCTCCCGCATATGC+AGG | - | chr6_3:75344832-75344851 | None:intergenic | 50.0% | |
| TCTCTTGATTGCGTGACTGC+AGG | - | chr6_3:75345033-75345052 | None:intergenic | 50.0% | |
| CGGCCAACCTAAAATGGATC+TGG | - | chr6_3:75345190-75345209 | None:intergenic | 50.0% | |
| ACATTCAACAGGTGGGAAGG+TGG | + | chr6_3:75346007-75346026 | Msa0959000:intron | 50.0% | |
| TGTCGGCGTCGTGTCAATGT+CGG | + | chr6_3:75343560-75343579 | Msa0959000:intron | 55.0% | |
| GGGTGGCAATAGCACGTTTC+TGG | + | chr6_3:75343858-75343877 | Msa0959000:intron | 55.0% | |
| CAAGAAGGGGTCCCACCAAT+TGG | - | chr6_3:75344806-75344825 | None:intergenic | 55.0% | |
| CAATTGGTGGGACCCCTTCT+TGG | + | chr6_3:75344804-75344823 | Msa0959000:intron | 55.0% | |
| CGCATATGCAGGGTCCAAGA+AGG | - | chr6_3:75344821-75344840 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCTC+CGG | + | chr6_3:75344836-75344855 | Msa0959000:intron | 55.0% |
| TTGCGTGACTGCAGGAAACC+TGG | - | chr6_3:75345025-75345044 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 75343121 | 75346457 | 75343121 | ID=Msa0959000;Name=Msa0959000 |
| chr6_3 | mRNA | 75343121 | 75346457 | 75343121 | ID=Msa0959000-mRNA-1;Parent=Msa0959000;Name=Msa0959000-mRNA-1;_AED=0.03;_eAED=0.03;_QI=34|1|1|1|1|1|2|229|130 |
| chr6_3 | exon | 75343121 | 75343336 | 75343121 | ID=Msa0959000-mRNA-1:exon:13457;Parent=Msa0959000-mRNA-1 |
| chr6_3 | exon | 75346018 | 75346457 | 75346018 | ID=Msa0959000-mRNA-1:exon:13458;Parent=Msa0959000-mRNA-1 |
| chr6_3 | five_prime_UTR | 75343121 | 75343154 | 75343121 | ID=Msa0959000-mRNA-1:five_prime_utr;Parent=Msa0959000-mRNA-1 |
| chr6_3 | CDS | 75343155 | 75343336 | 75343155 | ID=Msa0959000-mRNA-1:cds;Parent=Msa0959000-mRNA-1 |
| chr6_3 | CDS | 75346018 | 75346228 | 75346018 | ID=Msa0959000-mRNA-1:cds;Parent=Msa0959000-mRNA-1 |
| chr6_3 | three_prime_UTR | 75346229 | 75346457 | 75346229 | ID=Msa0959000-mRNA-1:three_prime_utr;Parent=Msa0959000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
