AlfalfaGEDB | Msa0508630

M. sativa cultivar zhongmu-4 / Msa0508630

KEGG: K20280
GO: -
PFAM: PF04051.19

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0508630	XP_003600850.1	100.000	194	0	0	1	194	1	194	2.85e-139	396

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0508630	sp\|Q54YG5\|TPPC5_DICDI	60.000	180	72	0	12	191	7	186	3.34e-79	237

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0508630	B7FMS6	100.000	194	0	0	1	194	1	194	1.36e-139	396

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa0508630	0.813712	2.227348e-51	-8.615850e-47
Msa0002490	Msa0508630	0.831206	1.904033e-55	-8.615850e-47
Msa0002540	Msa0508630	0.809552	1.788057e-50	-8.615850e-47
Msa0003780	Msa0508630	0.810763	9.806249e-51	-8.615850e-47
Msa0004950	Msa0508630	0.835434	1.681971e-56	-8.615850e-47
Msa0004980	Msa0508630	0.843228	1.594565e-58	-8.615850e-47
Msa0006550	Msa0508630	0.807136	5.858377e-50	-8.615850e-47
Msa0008090	Msa0508630	0.816673	4.897600e-52	-8.615850e-47
Msa0008410	Msa0508630	0.804735	1.872903e-49	-8.615850e-47
Msa0013050	Msa0508630	-0.806515	7.925177e-50	-8.615850e-47

Showing 1 to 10 of 536 entries

Previous1 2 3 4 5…54Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0508630	MtrunA17_Chr3g0113071	100.000	194	0	0	1	194	1	194	2.62e-143	396

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0508630	AT5G58030.1	91.753	194	16	0	1	194	1	194	9.88e-133	370

Showing 1 to 1 of 1 entries

Previous1Next

Find 73 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCTAACGAATGTCTA+AGG	0.279154	3_4:-56725657	None:intergenic
AAACAGTAGCGAGATCAAAT+CGG	0.473169	3_4:+56725749	Msa0508630:five_prime_UTR
AAATGAGCTGTTACAACAGC+TGG	0.448130	3_4:-56730013	None:intergenic
AAATGCTAACGAATGTCTAA+GGG	0.614752	3_4:-56725656	None:intergenic
AACAGTAGCGAGATCAAATC+GGG	0.474458	3_4:+56725750	Msa0508630:five_prime_UTR
AACTGTGGCGCATTCGTTGC+TGG	0.327680	3_4:+56729864	Msa0508630:CDS
AAGCACAACATCAAATGGAT+AGG	0.561423	3_4:-56730332	None:intergenic
ACAACATCAAATGGATAGGC+TGG	0.445835	3_4:-56730328	None:intergenic
ACAGTGTGGAAAGTACTATT+TGG	0.365299	3_4:+56728262	Msa0508630:CDS
AGAACTATTCCCAACTTCAA+AGG	0.552777	3_4:-56730386	None:intergenic

Showing 1 to 10 of 73 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTTGAAAGAAAATGCATTTG+AGG	-	chr3_4:56725930-56725949	None:intergenic	30.0%
CAATTCTCTTCAACTTCAAT+CGG	+	chr3_4:56726012-56726031	Msa0508630:intron	30.0%
AATTCTCTTCAACTTCAATC+GGG	+	chr3_4:56726013-56726032	Msa0508630:intron	30.0%
GCAATAATGATAAGGTAAGT+GGG	-	chr3_4:56726047-56726066	None:intergenic	30.0%
AGCAATAATGATAAGGTAAG+TGG	-	chr3_4:56726048-56726067	None:intergenic	30.0%
TAAACAGAAGAAGAACATAC+AGG	-	chr3_4:56726530-56726549	None:intergenic	30.0%
AAGTAGGTTCTCTTTCATTA+AGG	+	chr3_4:56726556-56726575	Msa0508630:intron	30.0%
TATTCGGGATGTTCTTTAAT+AGG	-	chr3_4:56727116-56727135	None:intergenic	30.0%
AAGATTTGAGAGATTCTACT+TGG	-	chr3_4:56727152-56727171	None:intergenic	30.0%
GATATAATTGAGTGCAAAGA+GGG	-	chr3_4:56727175-56727194	None:intergenic	30.0%

Showing 1 to 10 of 308 entries

Previous1 2 3 4 5…31Next

Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	56725659	56730559	56725659	ID=Msa0508630;Name=Msa0508630
chr3_4	mRNA	56725659	56730559	56725659	ID=Msa0508630-mRNA-1;Parent=Msa0508630;Name=Msa0508630-mRNA-1;_AED=0.09;_eAED=0.09;_QI=176\|1\|1\|1\|1\|1\|8\|338\|194
chr3_4	exon	56725659	56725906	56725659	ID=Msa0508630-mRNA-1:exon:12824;Parent=Msa0508630-mRNA-1
chr3_4	exon	56726357	56726445	56726357	ID=Msa0508630-mRNA-1:exon:12825;Parent=Msa0508630-mRNA-1
chr3_4	exon	56726731	56726794	56726731	ID=Msa0508630-mRNA-1:exon:12826;Parent=Msa0508630-mRNA-1
chr3_4	exon	56728211	56728288	56728211	ID=Msa0508630-mRNA-1:exon:12827;Parent=Msa0508630-mRNA-1
chr3_4	exon	56729663	56729739	56729663	ID=Msa0508630-mRNA-1:exon:12828;Parent=Msa0508630-mRNA-1
chr3_4	exon	56729830	56729896	56729830	ID=Msa0508630-mRNA-1:exon:12829;Parent=Msa0508630-mRNA-1
chr3_4	exon	56729989	56730096	56729989	ID=Msa0508630-mRNA-1:exon:12830;Parent=Msa0508630-mRNA-1
chr3_4	exon	56730192	56730559	56730192	ID=Msa0508630-mRNA-1:exon:12831;Parent=Msa0508630-mRNA-1
chr3_4	five_prime_UTR	56725659	56725834	56725659	ID=Msa0508630-mRNA-1:five_prime_utr;Parent=Msa0508630-mRNA-1
chr3_4	CDS	56725835	56725906	56725835	ID=Msa0508630-mRNA-1:cds;Parent=Msa0508630-mRNA-1
chr3_4	CDS	56726357	56726445	56726357	ID=Msa0508630-mRNA-1:cds;Parent=Msa0508630-mRNA-1
chr3_4	CDS	56726731	56726794	56726731	ID=Msa0508630-mRNA-1:cds;Parent=Msa0508630-mRNA-1
chr3_4	CDS	56728211	56728288	56728211	ID=Msa0508630-mRNA-1:cds;Parent=Msa0508630-mRNA-1
chr3_4	CDS	56729663	56729739	56729663	ID=Msa0508630-mRNA-1:cds;Parent=Msa0508630-mRNA-1
chr3_4	CDS	56729830	56729896	56729830	ID=Msa0508630-mRNA-1:cds;Parent=Msa0508630-mRNA-1
chr3_4	CDS	56729989	56730096	56729989	ID=Msa0508630-mRNA-1:cds;Parent=Msa0508630-mRNA-1
chr3_4	CDS	56730192	56730221	56730192	ID=Msa0508630-mRNA-1:cds;Parent=Msa0508630-mRNA-1
chr3_4	three_prime_UTR	56730222	56730559	56730222	ID=Msa0508630-mRNA-1:three_prime_utr;Parent=Msa0508630-mRNA-1

Gene Sequence

>Msa0508630

ATGATCGGAGTAGGAAAGGTAAAGCAGTACGGCAACGTCCTCGATAAACCTCTTAACAAGGGCAAGACCGAGGTTAGTTTGAGTGCATTTGCATTCTTGTTCTCCGAGCTTGTTCAGTACAACCAAACACAGGTTGACAATATTGGCGAGCTCGAACGAAGATTGGAGGATGCTGGATATGCTGTTGGGGCTCGTGTTCTTGAGCTGCTTTGCCACAGAGATAAGGGAAACAGAAGGGAGACACGATTGTTAGGTATTCTCTCTTTTGTACACAGTACAGTGTGGAAAGTACTATTTGGAAAGGTAGCTGACTCACTGGAGAAAGGCACTGAACACGAAGATGAATACATGATCAGTGAAAAGGAACTCCTAGTAAACAAATTCATTTCTATCCCAAAGGACATGGGAACGTTTAACTGTGGCGCATTCGTTGCTGGAATAGTTCGGGGTGTTTTGGATGGTGCTGGCTTTCCAGCTGTTGTAACAGCTCATTTTGTGCCCATGGAAGGTCAACAACGACCTCGGACCACAATTTTGATAAAATTTGCTGAAGAGGTGTTACTTAGAGAAGCAAGATTAGGCTGA

Protein sequence

>Msa0508630

MIGVGKVKQYGNVLDKPLNKGKTEVSLSAFAFLFSELVQYNQTQVDNIGELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNKFISIPKDMGTFNCGAFVAGIVRGVLDGAGFPAVVTAHFVPMEGQQRPRTTILIKFAEEVLLREARLG*