AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0127310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127310 MtrunA17_Chr1g0190621 100.000 126 0 0 1 126 1 126 5.49e-88 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127310 AT1G08780.1 71.318 129 34 1 1 126 1 129 1.70e-62 187

Find 59 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCAATGTTTCTAACTTTC+CGG 0.166301 1_3:+56559484 Msa0127310:three_prime_UTR
TAACTTATTTATAGATTTCT+AGG 0.180155 1_3:+56559361 Msa0127310:three_prime_UTR
GATTTCTAGGTTACTTTCTA+TGG 0.191131 1_3:+56559374 Msa0127310:three_prime_UTR
AAAATTCTGTATGGGAAGTT+TGG 0.251421 1_3:+56559310 Msa0127310:CDS
ACAATAAAGACTCCTTTCTT+TGG 0.267753 1_3:-56559546 None:intergenic
ACAGGAATCAAATGATAATT+TGG 0.284647 1_3:+56559096 Msa0127310:intron
AGAAGCGACAAGCCAGAAAT+TGG 0.310931 1_3:+56559234 Msa0127310:CDS
AACATTTGATACTTATGCTT+TGG 0.324058 1_3:+56559669 Msa0127310:three_prime_UTR
AGGTCGTTCGGTTTCAAATA+GGG 0.342219 1_3:+56559155 Msa0127310:CDS
ATCAACACTCTTTGATTCTC+AGG 0.349718 1_3:+56556126 Msa0127310:five_prime_UTR
GAGGTCGTTCGGTTTCAAAT+AGG 0.358066 1_3:+56559154 Msa0127310:CDS
ACTCTTTGATTCTCAGGTTC+TGG 0.363824 1_3:+56556132 Msa0127310:five_prime_UTR
GTTGATTCAAATTCGATGTA+TGG 0.367701 1_3:-56556193 None:intergenic
CTCCCAGGTAACTTCCGTTT+CGG 0.367751 1_3:-56556319 None:intergenic
CAATAAAGACTCCTTTCTTT+GGG 0.368723 1_3:-56559545 None:intergenic
CGAATTTGTTGATGTTCTGC+TGG 0.380247 1_3:-56556344 None:intergenic
AGATTGTGTCTCTTAATTGT+AGG 0.390561 1_3:+56559433 Msa0127310:three_prime_UTR
CGATCCAACCTAGTAATAAC+TGG 0.411872 1_3:+56559591 Msa0127310:three_prime_UTR
TGAGAATCAAAGAGTGTTGA+TGG 0.417514 1_3:-56556124 None:intergenic
GATCCGAAACGGAAGTTACC+TGG 0.424382 1_3:+56556316 Msa0127310:CDS
CAGCAGAACATCAACAAATT+CGG 0.438286 1_3:+56556345 Msa0127310:CDS
GAACTGAAGAAAATTCTGTA+TGG 0.443165 1_3:+56559301 Msa0127310:CDS
TACAATTAAGAGACACAATC+TGG 0.461620 1_3:-56559431 None:intergenic
CTGCTCTCTACTTCATCCTT+AGG 0.477281 1_3:-56559196 None:intergenic
TCACAGATGAAGAGGTCGTT+CGG 0.479003 1_3:+56559143 Msa0127310:CDS
TTGAATCAACAAGATGCAAC+AGG 0.487875 1_3:+56556206 Msa0127310:exon
GATGTTCTGCTGGTCCTCCC+AGG 0.504132 1_3:-56556334 None:intergenic
TTGACCAGTTATTACTAGGT+TGG 0.511692 1_3:-56559595 None:intergenic
TCAAAGAGTGTTGATGGGCC+TGG 0.521496 1_3:-56556118 None:intergenic
CAGTTCTTAAAATTTGAGCC+AGG 0.529405 1_3:+56556100 Msa0127310:five_prime_UTR
TTGTATTCTATCCCAAAGAA+AGG 0.533087 1_3:+56559534 Msa0127310:three_prime_UTR
GGTATTTGCTCATGTGCCTA+AGG 0.537164 1_3:+56559180 Msa0127310:CDS
AACTGAAGAAAATTCTGTAT+GGG 0.540625 1_3:+56559302 Msa0127310:CDS
TTGTGATGCGTAAAGGGAGG+AGG 0.548135 1_3:+56556294 Msa0127310:intron
GGTCGTTCGGTTTCAAATAG+GGG 0.554503 1_3:+56559156 Msa0127310:CDS
GGAATCAAATGATAATTTGG+AGG 0.556672 1_3:+56559099 Msa0127310:intron
AGCCGGAAAGTTAGAAACAT+TGG 0.556790 1_3:-56559486 None:intergenic
ACCGTTGACCAGTTATTACT+AGG 0.557040 1_3:-56559599 None:intergenic
TGGAGAATCTATCAATCTTG+AGG 0.571653 1_3:+56559330 Msa0127310:CDS
CTAAGGATGAAGTAGAGAGC+AGG 0.573213 1_3:+56559197 Msa0127310:CDS
GTTAATTCTCACAGATGAAG+AGG 0.578655 1_3:+56559135 Msa0127310:CDS
CTTGACATATTTGAGCATGT+TGG 0.583276 1_3:+56559628 Msa0127310:three_prime_UTR
AAATCAGTCAAAGTTCTATG+AGG 0.588949 1_3:-56559405 None:intergenic
ATCTCACAGAATGAACAAGC+CGG 0.592616 1_3:-56559503 None:intergenic
TGATGAGATCAAAATCGCTA+AGG 0.599557 1_3:+56556398 Msa0127310:CDS
CCAGAAATTGGAAAAGCTTG+AGG 0.599943 1_3:+56559246 Msa0127310:CDS
ATCCGAAACGGAAGTTACCT+GGG 0.600013 1_3:+56556317 Msa0127310:CDS
CATTGGCAAACAGTGAAATG+AGG 0.613129 1_3:-56559469 None:intergenic
GGTTCTGGTCAAGCTTGCAG+TGG 0.615906 1_3:+56556147 Msa0127310:five_prime_UTR
GAGAATCAAAGAGTGTTGAT+GGG 0.624968 1_3:-56556123 None:intergenic
CGTTCGGTTTCAAATAGGGG+AGG 0.636159 1_3:+56559159 Msa0127310:CDS
AGAATCTATCAATCTTGAGG+AGG 0.639907 1_3:+56559333 Msa0127310:CDS
AAAGGGAGGAGGATCCGAAA+CGG 0.642912 1_3:+56556305 Msa0127310:intron
ACCTAGTAATAACTGGTCAA+CGG 0.646427 1_3:+56559598 Msa0127310:three_prime_UTR
AGAACATCAACAAATTCGGA+AGG 0.648692 1_3:+56556349 Msa0127310:CDS
TTCAGACATCTGAGCAACCA+CGG 0.661375 1_3:-56559281 None:intergenic
GAAATTGGAAAAGCTTGAGG+AGG 0.664223 1_3:+56559249 Msa0127310:CDS
TGAGGAGGAGAAACAATCCG+TGG 0.717310 1_3:+56559264 Msa0127310:CDS
CGAAACGGAAGTTACCTGGG+AGG 0.771650 1_3:+56556320 Msa0127310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAAATTAAAAAATAT+AGG + chr1_3:56558267-56558286 Msa0127310:intron 0.0%
!!! TTAATAACTTTTTTCAATTA+AGG - chr1_3:56556750-56556769 None:intergenic 10.0%
!! AATTATTGCTTATTAAAATA+TGG + chr1_3:56558378-56558397 Msa0127310:intron 10.0%
!! TTATTAAAATATGGTATAAA+CGG + chr1_3:56558387-56558406 Msa0127310:intron 10.0%
!! AATCTCAAAAATTCAATTTA+GGG - chr1_3:56556242-56556261 None:intergenic 15.0%
!!! ATTTTAAAGGAAAACAAAAA+TGG + chr1_3:56556956-56556975 Msa0127310:intron 15.0%
!! AAAACAAAAAATACAAAATC+TGG + chr1_3:56557092-56557111 Msa0127310:intron 15.0%
!!! TTTTCAATTTATTTCCATAA+AGG + chr1_3:56557475-56557494 Msa0127310:intron 15.0%
!! ATATATATAATTCTTGTGAA+TGG - chr1_3:56557818-56557837 None:intergenic 15.0%
!! AAAAAAAATATATCAGCAAT+AGG + chr1_3:56557956-56557975 Msa0127310:intron 15.0%
!! AAAAAAATATATCAGCAATA+GGG + chr1_3:56557957-56557976 Msa0127310:intron 15.0%
!!! GTAAATTATTTTGAGAAATA+TGG + chr1_3:56558073-56558092 Msa0127310:intron 15.0%
!!! ATACATGTCTTTTTTTTTTA+AGG - chr1_3:56558243-56558262 None:intergenic 15.0%
!! AAATAATATTTAGTTGTTTG+AGG + chr1_3:56558956-56558975 Msa0127310:intron 15.0%
!! AACATCAAAATATAAAACAA+TGG - chr1_3:56559053-56559072 None:intergenic 15.0%
!! TAACTTATTTATAGATTTCT+AGG + chr1_3:56559361-56559380 Msa0127310:three_prime_UTR 15.0%
!! CAATCTCAAAAATTCAATTT+AGG - chr1_3:56556243-56556262 None:intergenic 20.0%
!! AAATATAAGCTATAAGCTTA+AGG - chr1_3:56556617-56556636 None:intergenic 20.0%
!!! GAGTGTTTCATTTATTTTAA+AGG + chr1_3:56556943-56556962 Msa0127310:intron 20.0%
!!! TTTTGTTTTTCCATTCAAAT+AGG - chr1_3:56557081-56557100 None:intergenic 20.0%
!!! CTCAACATACATTTTTATTT+TGG + chr1_3:56557126-56557145 Msa0127310:intron 20.0%
!! AAACTATAAGAACTATATAG+CGG - chr1_3:56557348-56557367 None:intergenic 20.0%
!!! TATAGTTCTTATAGTTTTTG+AGG + chr1_3:56557351-56557370 Msa0127310:intron 20.0%
!! CTCAAATAATGATAATTATC+TGG - chr1_3:56557379-56557398 None:intergenic 20.0%
!! TATGGAAATAAATTGAAAAC+AGG - chr1_3:56557474-56557493 None:intergenic 20.0%
!! TACAACCAAATTTATTAGAA+AGG - chr1_3:56557937-56557956 None:intergenic 20.0%
!! AACAACTATAAAAATTTACC+TGG + chr1_3:56558019-56558038 Msa0127310:intron 20.0%
!!! ATAAGCACTTGTTATATAAA+AGG - chr1_3:56558604-56558623 None:intergenic 20.0%
!!! TATATTTTGATGTTAATGCA+TGG + chr1_3:56559059-56559078 Msa0127310:intron 20.0%
!!! AAAGGTTTTGGAATAGAAAT+GGG + chr1_3:56556458-56556477 Msa0127310:intron 25.0%
! GGATATAAACTACTCATATA+GGG - chr1_3:56556502-56556521 None:intergenic 25.0%
! AGGATATAAACTACTCATAT+AGG - chr1_3:56556503-56556522 None:intergenic 25.0%
! AATTTATAAGCTCAGATATG+TGG - chr1_3:56556570-56556589 None:intergenic 25.0%
!!! TTTTTCAATTAAGGCTACAA+TGG - chr1_3:56556741-56556760 None:intergenic 25.0%
! GTAGTGTTTGATAAAATTAG+CGG - chr1_3:56556787-56556806 None:intergenic 25.0%
! TAAAGGAAAACAAAAATGGT+TGG + chr1_3:56556960-56556979 Msa0127310:intron 25.0%
! TGATTCATATTGTATGATTC+TGG - chr1_3:56557048-56557067 None:intergenic 25.0%
! TATAAGCTATTTATCCAAAC+GGG - chr1_3:56557502-56557521 None:intergenic 25.0%
! CTATAAGCTATTTATCCAAA+CGG - chr1_3:56557503-56557522 None:intergenic 25.0%
!! CTTACATAATTTGAAGTGTT+TGG + chr1_3:56557620-56557639 Msa0127310:intron 25.0%
! TCTCACCTTTCTAATAAATT+TGG + chr1_3:56557929-56557948 Msa0127310:intron 25.0%
! ACAATACAAATACAAATACC+AGG - chr1_3:56558040-56558059 None:intergenic 25.0%
! CGTGTGTTAATTAAAGAATA+AGG + chr1_3:56558185-56558204 Msa0127310:intron 25.0%
!! AAGAATAAGGTATTCTAGTT+AGG + chr1_3:56558198-56558217 Msa0127310:intron 25.0%
!!! ATATAGGCTTTGAAGAAAAA+AGG + chr1_3:56558283-56558302 Msa0127310:intron 25.0%
!!! TTTGTTTTCATAAGCTATCA+TGG - chr1_3:56558533-56558552 None:intergenic 25.0%
! TAAAGTTGTTTATCCAAACA+AGG + chr1_3:56558646-56558665 Msa0127310:intron 25.0%
! ACAGGAATCAAATGATAATT+TGG + chr1_3:56559096-56559115 Msa0127310:intron 25.0%
! AACTGAAGAAAATTCTGTAT+GGG + chr1_3:56559302-56559321 Msa0127310:CDS 25.0%
! AACATTTGATACTTATGCTT+TGG + chr1_3:56559669-56559688 Msa0127310:three_prime_UTR 25.0%
!! TGGCTCAAATTTTAAGAACT+GGG - chr1_3:56556101-56556120 None:intergenic 30.0%
! GTTGATTCAAATTCGATGTA+TGG - chr1_3:56556196-56556215 None:intergenic 30.0%
ATTTGTTTGTGATGCGTAAA+GGG + chr1_3:56556288-56556307 Msa0127310:intron 30.0%
GCTAAGGTAATCAATCTTTA+GGG + chr1_3:56556414-56556433 Msa0127310:intron 30.0%
CATGTTCCAATCATATTCAA+AGG + chr1_3:56556440-56556459 Msa0127310:intron 30.0%
CCAAAACCTTTGAATATGAT+TGG - chr1_3:56556449-56556468 None:intergenic 30.0%
! CCAATCATATTCAAAGGTTT+TGG + chr1_3:56556446-56556465 Msa0127310:intron 30.0%
!!! CAAAGGTTTTGGAATAGAAA+TGG + chr1_3:56556457-56556476 Msa0127310:intron 30.0%
!! ATAGGGATTCTCTTTGATTT+TGG - chr1_3:56556485-56556504 None:intergenic 30.0%
TATAAGCTATAAGCTTAAGG+TGG - chr1_3:56556614-56556633 None:intergenic 30.0%
TGATGTATACATGTATGTGT+GGG - chr1_3:56556904-56556923 None:intergenic 30.0%
CATACAATATGAATCAGAGA+AGG + chr1_3:56557052-56557071 Msa0127310:intron 30.0%
!! TTATTAGAGAAAGCGTTCAT+CGG + chr1_3:56557294-56557313 Msa0127310:intron 30.0%
TCGGAAGAAAAAGAAATTAG+CGG + chr1_3:56557313-56557332 Msa0127310:intron 30.0%
CATTATTTGAGCTTAACTAC+TGG + chr1_3:56557388-56557407 Msa0127310:intron 30.0%
ATAAGCTATTTATCCAAACG+GGG - chr1_3:56557501-56557520 None:intergenic 30.0%
CTCGATAAGCTATTTATGTT+TGG + chr1_3:56557578-56557597 Msa0127310:intron 30.0%
!! TTTTTACAGCTTTTTAGTCG+TGG - chr1_3:56557713-56557732 None:intergenic 30.0%
TCAAAATAAGCCAATCCAAA+CGG + chr1_3:56558496-56558515 Msa0127310:intron 30.0%
!! TTTATTTTCTGCTTGAGTCA+AGG - chr1_3:56558679-56558698 None:intergenic 30.0%
ATCCTCGAAAATCAATTATG+TGG + chr1_3:56558815-56558834 Msa0127310:intron 30.0%
!! AACCACATAATTGATTTTCG+AGG - chr1_3:56558820-56558839 None:intergenic 30.0%
GGAATCAAATGATAATTTGG+AGG + chr1_3:56559099-56559118 Msa0127310:intron 30.0%
GAACTGAAGAAAATTCTGTA+TGG + chr1_3:56559301-56559320 Msa0127310:CDS 30.0%
AAAATTCTGTATGGGAAGTT+TGG + chr1_3:56559310-56559329 Msa0127310:CDS 30.0%
! GATTTCTAGGTTACTTTCTA+TGG + chr1_3:56559374-56559393 Msa0127310:three_prime_UTR 30.0%
AAATCAGTCAAAGTTCTATG+AGG - chr1_3:56559408-56559427 None:intergenic 30.0%
TACAATTAAGAGACACAATC+TGG - chr1_3:56559434-56559453 None:intergenic 30.0%
AGATTGTGTCTCTTAATTGT+AGG + chr1_3:56559433-56559452 Msa0127310:three_prime_UTR 30.0%
TTGTATTCTATCCCAAAGAA+AGG + chr1_3:56559534-56559553 Msa0127310:three_prime_UTR 30.0%
CAATAAAGACTCCTTTCTTT+GGG - chr1_3:56559548-56559567 None:intergenic 30.0%
ACAATAAAGACTCCTTTCTT+TGG - chr1_3:56559549-56559568 None:intergenic 30.0%
GTCTATCAGTAACAAAAATG+TGG + chr1_3:56559567-56559586 Msa0127310:three_prime_UTR 30.0%
!! CTGGCTCAAATTTTAAGAAC+TGG - chr1_3:56556102-56556121 None:intergenic 35.0%
CAGTTCTTAAAATTTGAGCC+AGG + chr1_3:56556100-56556119 Msa0127310:five_prime_UTR 35.0%
!! GAGAATCAAAGAGTGTTGAT+GGG - chr1_3:56556126-56556145 None:intergenic 35.0%
!! TGAGAATCAAAGAGTGTTGA+TGG - chr1_3:56556127-56556146 None:intergenic 35.0%
ATCAACACTCTTTGATTCTC+AGG + chr1_3:56556126-56556145 Msa0127310:five_prime_UTR 35.0%
TTGAATCAACAAGATGCAAC+AGG + chr1_3:56556206-56556225 Msa0127310:exon 35.0%
CATTTGTTTGTGATGCGTAA+AGG + chr1_3:56556287-56556306 Msa0127310:intron 35.0%
CAGCAGAACATCAACAAATT+CGG + chr1_3:56556345-56556364 Msa0127310:CDS 35.0%
AGAACATCAACAAATTCGGA+AGG + chr1_3:56556349-56556368 Msa0127310:CDS 35.0%
TGATGAGATCAAAATCGCTA+AGG + chr1_3:56556398-56556417 Msa0127310:CDS 35.0%
CGCTAAGGTAATCAATCTTT+AGG + chr1_3:56556413-56556432 Msa0127310:intron 35.0%
! CAACAAAAAGCATGTAGCAA+AGG - chr1_3:56556523-56556542 None:intergenic 35.0%
TTGAGATAGTGCTATCTGTT+TGG + chr1_3:56556540-56556559 Msa0127310:intron 35.0%
AAATAGCGAATCGCTGATAA+CGG - chr1_3:56556835-56556854 None:intergenic 35.0%
GTGGGAATAAGAATTGTTTG+TGG - chr1_3:56556886-56556905 None:intergenic 35.0%
GTGATGTATACATGTATGTG+TGG - chr1_3:56556905-56556924 None:intergenic 35.0%
ACTCTGTCTTTGTTCATATG+AGG - chr1_3:56556927-56556946 None:intergenic 35.0%
!! TTCTGGTTCCTATTTCCTAT+CGG - chr1_3:56557031-56557050 None:intergenic 35.0%
GAGAAGGTTTCCTATTTGAA+TGG + chr1_3:56557068-56557087 Msa0127310:intron 35.0%
TTGATCAGTTCTATAGTGCT+AGG - chr1_3:56557174-56557193 None:intergenic 35.0%
AGGGGGTCATATATATATAC+TGG + chr1_3:56558321-56558340 Msa0127310:intron 35.0%
TTACCCAAACGCATTTGAAA+AGG + chr1_3:56558442-56558461 Msa0127310:intron 35.0%
! AAGCCTTTTCAAATGCGTTT+GGG - chr1_3:56558448-56558467 None:intergenic 35.0%
! TAAGCCTTTTCAAATGCGTT+TGG - chr1_3:56558449-56558468 None:intergenic 35.0%
CAAAATAAGCCAATCCAAAC+GGG + chr1_3:56558497-56558516 Msa0127310:intron 35.0%
AAAATAAGCCAATCCAAACG+GGG + chr1_3:56558498-56558517 Msa0127310:intron 35.0%
ATAAGCTATCATGGAGAGTT+TGG - chr1_3:56558524-56558543 None:intergenic 35.0%
TGTGATGTCTTTCAACTTCT+CGG + chr1_3:56558926-56558945 Msa0127310:intron 35.0%
TTGCAAAATGCTTAGAAGGA+GGG - chr1_3:56559022-56559041 None:intergenic 35.0%
ATTGCAAAATGCTTAGAAGG+AGG - chr1_3:56559023-56559042 None:intergenic 35.0%
GTCATTGCAAAATGCTTAGA+AGG - chr1_3:56559026-56559045 None:intergenic 35.0%
!! ATGGAGATTTTGTTTGTCAC+AGG + chr1_3:56559078-56559097 Msa0127310:intron 35.0%
GTTAATTCTCACAGATGAAG+AGG + chr1_3:56559135-56559154 Msa0127310:CDS 35.0%
TGGAGAATCTATCAATCTTG+AGG + chr1_3:56559330-56559349 Msa0127310:CDS 35.0%
AGAATCTATCAATCTTGAGG+AGG + chr1_3:56559333-56559352 Msa0127310:CDS 35.0%
! TGCCAATGTTTCTAACTTTC+CGG + chr1_3:56559484-56559503 Msa0127310:three_prime_UTR 35.0%
TTGACCAGTTATTACTAGGT+TGG - chr1_3:56559598-56559617 None:intergenic 35.0%
ACCTAGTAATAACTGGTCAA+CGG + chr1_3:56559598-56559617 Msa0127310:three_prime_UTR 35.0%
CTTGACATATTTGAGCATGT+TGG + chr1_3:56559628-56559647 Msa0127310:three_prime_UTR 35.0%
ACTCTTTGATTCTCAGGTTC+TGG + chr1_3:56556132-56556151 Msa0127310:five_prime_UTR 40.0%
!! CGAATTTGTTGATGTTCTGC+TGG - chr1_3:56556347-56556366 None:intergenic 40.0%
AGAAACTGTACGTCTCTGTT+TGG - chr1_3:56556862-56556881 None:intergenic 40.0%
ATTTCCTATCGGGATGATTC+TGG - chr1_3:56557020-56557039 None:intergenic 40.0%
GAATCATCCCGATAGGAAAT+AGG + chr1_3:56557020-56557039 Msa0127310:intron 40.0%
! TCTGGTTCCTATTTCCTATC+GGG - chr1_3:56557030-56557049 None:intergenic 40.0%
TGCTAGGAGTTCAAAGTAAG+AGG - chr1_3:56557158-56557177 None:intergenic 40.0%
!! AAAGGTAAAGCGAGTATCGA+AGG + chr1_3:56558301-56558320 Msa0127310:intron 40.0%
!! AAGGTAAAGCGAGTATCGAA+GGG + chr1_3:56558302-56558321 Msa0127310:intron 40.0%
AGCTTACCACATAGCTTATG+CGG - chr1_3:56558355-56558374 None:intergenic 40.0%
TTGCTAGGTTTGAGGAAAAG+TGG + chr1_3:56558761-56558780 Msa0127310:intron 40.0%
ACACGACACACATGAGAAAA+GGG - chr1_3:56558853-56558872 None:intergenic 40.0%
TGTCTTTCAACTTCTCGGTT+TGG + chr1_3:56558931-56558950 Msa0127310:intron 40.0%
TGCAAAATGCTTAGAAGGAG+GGG - chr1_3:56559021-56559040 None:intergenic 40.0%
AGGTCGTTCGGTTTCAAATA+GGG + chr1_3:56559155-56559174 Msa0127310:CDS 40.0%
! CCTCAAGCTTTTCCAATTTC+TGG - chr1_3:56559249-56559268 None:intergenic 40.0%
CCAGAAATTGGAAAAGCTTG+AGG + chr1_3:56559246-56559265 Msa0127310:CDS 40.0%
GAAATTGGAAAAGCTTGAGG+AGG + chr1_3:56559249-56559268 Msa0127310:CDS 40.0%
CATTGGCAAACAGTGAAATG+AGG - chr1_3:56559472-56559491 None:intergenic 40.0%
AGCCGGAAAGTTAGAAACAT+TGG - chr1_3:56559489-56559508 None:intergenic 40.0%
ATCTCACAGAATGAACAAGC+CGG - chr1_3:56559506-56559525 None:intergenic 40.0%
CGATCCAACCTAGTAATAAC+TGG + chr1_3:56559591-56559610 Msa0127310:three_prime_UTR 40.0%
ACCGTTGACCAGTTATTACT+AGG - chr1_3:56559602-56559621 None:intergenic 40.0%
TGTTTGTGATGCGTAAAGGG+AGG + chr1_3:56556291-56556310 Msa0127310:intron 45.0%
ATCCGAAACGGAAGTTACCT+GGG + chr1_3:56556317-56556336 Msa0127310:CDS 45.0%
! TATCGGGATGATTCTGGTTG+TGG - chr1_3:56557014-56557033 None:intergenic 45.0%
ACAACCAGAATCATCCCGAT+AGG + chr1_3:56557013-56557032 Msa0127310:intron 45.0%
TAAGCGCTTGAGAGACTGTT+TGG + chr1_3:56557413-56557432 Msa0127310:intron 45.0%
AAGCGCTTGAGAGACTGTTT+GGG + chr1_3:56557414-56557433 Msa0127310:intron 45.0%
ATTTCCATAAAGGCCCCGTT+TGG + chr1_3:56557485-56557504 Msa0127310:intron 45.0%
TTATCCAAACGGGGCCTTTA+TGG - chr1_3:56557492-56557511 None:intergenic 45.0%
!! AGGTAAAGCGAGTATCGAAG+GGG + chr1_3:56558303-56558322 Msa0127310:intron 45.0%
TAAGCTCCGCATAAGCTATG+TGG + chr1_3:56558346-56558365 Msa0127310:intron 45.0%
! TCAAGGAGATCTGCCTTGTT+TGG - chr1_3:56558662-56558681 None:intergenic 45.0%
CAAACCTAGCAAAGAACTCG+AGG - chr1_3:56558753-56558772 None:intergenic 45.0%
CGAGTTCTTTGCTAGGTTTG+AGG + chr1_3:56558753-56558772 Msa0127310:intron 45.0%
CACACGACACACATGAGAAA+AGG - chr1_3:56558854-56558873 None:intergenic 45.0%
TCACAGATGAAGAGGTCGTT+CGG + chr1_3:56559143-56559162 Msa0127310:CDS 45.0%
GAGGTCGTTCGGTTTCAAAT+AGG + chr1_3:56559154-56559173 Msa0127310:CDS 45.0%
GGTCGTTCGGTTTCAAATAG+GGG + chr1_3:56559156-56559175 Msa0127310:CDS 45.0%
GGTATTTGCTCATGTGCCTA+AGG + chr1_3:56559180-56559199 Msa0127310:CDS 45.0%
CTGCTCTCTACTTCATCCTT+AGG - chr1_3:56559199-56559218 None:intergenic 45.0%
CTAAGGATGAAGTAGAGAGC+AGG + chr1_3:56559197-56559216 Msa0127310:CDS 45.0%
AGAAGCGACAAGCCAGAAAT+TGG + chr1_3:56559234-56559253 Msa0127310:CDS 45.0%
TTCAGACATCTGAGCAACCA+CGG - chr1_3:56559284-56559303 None:intergenic 45.0%
!! TCAAAGAGTGTTGATGGGCC+TGG - chr1_3:56556121-56556140 None:intergenic 50.0%
TTGTGATGCGTAAAGGGAGG+AGG + chr1_3:56556294-56556313 Msa0127310:intron 50.0%
AAAGGGAGGAGGATCCGAAA+CGG + chr1_3:56556305-56556324 Msa0127310:intron 50.0%
GATCCGAAACGGAAGTTACC+TGG + chr1_3:56556316-56556335 Msa0127310:CDS 50.0%
CTCCCAGGTAACTTCCGTTT+CGG - chr1_3:56556322-56556341 None:intergenic 50.0%
!! GCGAATCGCTGATAACGGAT+AGG - chr1_3:56556830-56556849 None:intergenic 50.0%
! GGGATGATTCTGGTTGTGGT+GGG - chr1_3:56557010-56557029 None:intergenic 50.0%
TTCCCGCAGAAGAACATGCT+TGG + chr1_3:56557262-56557281 Msa0127310:intron 50.0%
TCCCGCAGAAGAACATGCTT+GGG + chr1_3:56557263-56557282 Msa0127310:intron 50.0%
AAGAACATGCTTGGGGGTGA+TGG + chr1_3:56557271-56557290 Msa0127310:intron 50.0%
!! GGTAAAGCGAGTATCGAAGG+GGG + chr1_3:56558304-56558323 Msa0127310:intron 50.0%
AAGAACTCGAGGTAGGCAAC+AGG - chr1_3:56558742-56558761 None:intergenic 50.0%
CCTAGCAAAGAACTCGAGGT+AGG - chr1_3:56558749-56558768 None:intergenic 50.0%
CCTACCTCGAGTTCTTTGCT+AGG + chr1_3:56558746-56558765 Msa0127310:intron 50.0%
CGTTCGGTTTCAAATAGGGG+AGG + chr1_3:56559159-56559178 Msa0127310:CDS 50.0%
TGAGGAGGAGAAACAATCCG+TGG + chr1_3:56559264-56559283 Msa0127310:CDS 50.0%
! GGTTCTGGTCAAGCTTGCAG+TGG + chr1_3:56556147-56556166 Msa0127310:five_prime_UTR 55.0%
CGAAACGGAAGTTACCTGGG+AGG + chr1_3:56556320-56556339 Msa0127310:CDS 55.0%
! CGGGATGATTCTGGTTGTGG+TGG - chr1_3:56557011-56557030 None:intergenic 55.0%
CCCCAAGCATGTTCTTCTGC+GGG - chr1_3:56557267-56557286 None:intergenic 55.0%
CCCGCAGAAGAACATGCTTG+GGG + chr1_3:56557264-56557283 Msa0127310:intron 55.0%
CCCCCAAGCATGTTCTTCTG+CGG - chr1_3:56557268-56557287 None:intergenic 55.0%
CCGCAGAAGAACATGCTTGG+GGG + chr1_3:56557265-56557284 Msa0127310:intron 55.0%
GAGTTTGGCCCCGTTTGGAT+TGG - chr1_3:56558509-56558528 None:intergenic 55.0%
ATGGAGAGTTTGGCCCCGTT+TGG - chr1_3:56558514-56558533 None:intergenic 55.0%
GTGTGTCGTGTGTGTCTGAG+AGG + chr1_3:56558862-56558881 Msa0127310:intron 55.0%
GATGTTCTGCTGGTCCTCCC+AGG - chr1_3:56556337-56556356 None:intergenic 60.0%
GCGGGAAGTCTAGCACATCG+AGG - chr1_3:56557249-56557268 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 56556088 56559719 56556088 ID=Msa0127310;Name=Msa0127310
chr1_3 mRNA 56556088 56559719 56556088 ID=Msa0127310-mRNA-1;Parent=Msa0127310;Name=Msa0127310-mRNA-1;_AED=0.01;_eAED=0.01;_QI=131|1|1|1|1|1|3|359|126
chr1_3 exon 56556088 56556227 56556088 ID=Msa0127310-mRNA-1:exon:17846;Parent=Msa0127310-mRNA-1
chr1_3 exon 56556309 56556419 56556309 ID=Msa0127310-mRNA-1:exon:17847;Parent=Msa0127310-mRNA-1
chr1_3 exon 56559100 56559719 56559100 ID=Msa0127310-mRNA-1:exon:17848;Parent=Msa0127310-mRNA-1
chr1_3 five_prime_UTR 56556088 56556218 56556088 ID=Msa0127310-mRNA-1:five_prime_utr;Parent=Msa0127310-mRNA-1
chr1_3 CDS 56556219 56556227 56556219 ID=Msa0127310-mRNA-1:cds;Parent=Msa0127310-mRNA-1
chr1_3 CDS 56556309 56556419 56556309 ID=Msa0127310-mRNA-1:cds;Parent=Msa0127310-mRNA-1
chr1_3 CDS 56559100 56559360 56559100 ID=Msa0127310-mRNA-1:cds;Parent=Msa0127310-mRNA-1
chr1_3 three_prime_UTR 56559361 56559719 56559361 ID=Msa0127310-mRNA-1:three_prime_utr;Parent=Msa0127310-mRNA-1
Gene Sequence

>Msa0127310

ATGCAACAGGGAGGAGGATCCGAAACGGAAGTTACCTGGGAGGACCAGCAGAACATCAACAAATTCGGAAGGTTGAATAATCGCTTACACGAGCTACATGATGAGATCAAAATCGCTAAGGAATCAAATGATAATTTGGAGGATGCAAGCAATGAGTTAATTCTCACAGATGAAGAGGTCGTTCGGTTTCAAATAGGGGAGGTATTTGCTCATGTGCCTAAGGATGAAGTAGAGAGCAGGATAGAACAGATGCAAGAAGCGACAAGCCAGAAATTGGAAAAGCTTGAGGAGGAGAAACAATCCGTGGTTGCTCAGATGTCTGAACTGAAGAAAATTCTGTATGGGAAGTTTGGAGAATCTATCAATCTTGAGGAGGATTAG

Protein sequence

>Msa0127310

MQQGGGSETEVTWEDQQNINKFGRLNNRLHELHDEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVESRIEQMQEATSQKLEKLEEEKQSVVAQMSELKKILYGKFGESINLEED*