AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0231880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0231880 MtrunA17_Chr6g0479461 98.551 69 1 0 1 69 4 72 1.31e-47 145
Msa0231880 MtrunA17_Chr2g0278601 86.957 69 9 0 1 69 4 72 2.89e-42 131
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0231880 AT1G15120.1 78.261 69 15 0 1 69 1 69 1.62e-37 119
Msa0231880 AT2G01090.3 75.410 61 15 0 1 61 1 61 1.48e-31 104
Msa0231880 AT2G01090.4 75.410 61 15 0 1 61 1 61 1.48e-31 104
Msa0231880 AT2G01090.2 75.410 61 15 0 1 61 1 61 1.48e-31 104
Msa0231880 AT2G01090.1 75.410 61 15 0 1 61 1 61 1.48e-31 104
Msa0231880 AT1G15120.2 76.271 59 14 0 1 59 68 126 5.09e-31 106

Find 39 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGTTTAAAAGCAGTTATT+TGG 0.178520 2_2:-4222032 None:intergenic
ATTAACGGTCTGACACATTT+TGG 0.220545 2_2:-4219443 None:intergenic
CGATCGGGTTTCTCTATTTC+GGG 0.227916 2_2:-4219103 None:intergenic
AGGATACATGGTGATGATTC+TGG 0.240497 2_2:+4221783 Msa0231880:CDS
ATTCACCAAACTGAAGTAAT+AGG 0.242156 2_2:+4221963 Msa0231880:exon
TCGATCGGGTTTCTCTATTT+CGG 0.282358 2_2:-4219104 None:intergenic
CAGACCGTTAATTGAATATC+AGG 0.288636 2_2:+4219454 Msa0231880:CDS
ACCATACAGGGCATGAGTTT+TGG 0.315836 2_2:-4222066 None:intergenic
CGATCGAACCCGAATGGAAT+AGG 0.356831 2_2:+4219120 Msa0231880:five_prime_UTR
ATGTTTAAAAGCAGTTATTT+GGG 0.379418 2_2:-4222031 None:intergenic
CTATTCCATTCGGGTTCGAT+CGG 0.380582 2_2:-4219119 None:intergenic
GTCTGTCTCCTATTCCATTC+GGG 0.385670 2_2:-4219128 None:intergenic
TCTCCCCTATTACTTCAGTT+TGG 0.387199 2_2:-4221968 None:intergenic
AGTCTGTCTCCTATTCCATT+CGG 0.395852 2_2:-4219129 None:intergenic
CAAACCTGATATTCAATTAA+CGG 0.405138 2_2:-4219458 None:intergenic
TTCAGTTTGGTGAATAACTT+TGG 0.409826 2_2:-4221955 None:intergenic
TTCACCAAACTGAAGTAATA+GGG 0.417659 2_2:+4221964 Msa0231880:exon
TGCTACAGGCATGCATGAAA+AGG 0.434844 2_2:+4221763 Msa0231880:intron
TATTCCATTCGGGTTCGATC+GGG 0.443093 2_2:-4219118 None:intergenic
AATGAGCAAAATAACCATAC+AGG 0.462993 2_2:-4222079 None:intergenic
GGATACATGGTGATGATTCT+GGG 0.470418 2_2:+4221784 Msa0231880:CDS
GGTATTGCAGAATCGTAACT+TGG 0.476493 2_2:-4219167 None:intergenic
ACCAAAACTCATGCCCTGTA+TGG 0.479255 2_2:+4222065 Msa0231880:three_prime_UTR
TCTGGGCAGAAACACTGCAC+TGG 0.555865 2_2:+4221801 Msa0231880:CDS
ATAATCATCCAATGTCTCCA+TGG 0.564607 2_2:-4222116 None:intergenic
TAATCATCCAATGTCTCCAT+GGG 0.576748 2_2:-4222115 None:intergenic
GAAACCCGATCGAACCCGAA+TGG 0.580021 2_2:+4219114 Msa0231880:five_prime_UTR
ATAAATAGCGGTGCTCATGA+AGG 0.581404 2_2:-4222174 None:intergenic
AGCGGTGCTCATGAAGGAAG+TGG 0.582465 2_2:-4222168 None:intergenic
TCACCAAACTGAAGTAATAG+GGG 0.596486 2_2:+4221965 Msa0231880:exon
AGTAATAGGGGAGAATGTGT+TGG 0.599428 2_2:+4221977 Msa0231880:exon
GTTTATTTCGTAATAAATAG+CGG 0.600735 2_2:-4222186 None:intergenic
TTGATGATGTTGTTTCGTTG+TGG 0.604598 2_2:-4219188 None:intergenic
GGAATGAAGATAAAACAGAA+TGG 0.604767 2_2:-4222010 None:intergenic
GCATGCATGAAAAGGATACA+TGG 0.611275 2_2:+4221771 Msa0231880:CDS
GAATGAATTCAGGGCTGATG+AGG 0.622779 2_2:+4219379 Msa0231880:intron
ATGAGCAAAATAACCATACA+GGG 0.639914 2_2:-4222078 None:intergenic
GTATTGCAGAATCGTAACTT+GGG 0.642087 2_2:-4219166 None:intergenic
GTTGGTGCGCGAGCGATGAG+AGG 0.675420 2_2:-4219221 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATATTAAAATTAAAAA+TGG - chr2_2:4220834-4220853 None:intergenic 0.0%
!!! CATATTTTTCTTTTTTTTTT+TGG - chr2_2:4219580-4219599 None:intergenic 10.0%
!! AAAAAAAAGAAAAATATGAT+CGG + chr2_2:4219582-4219601 Msa0231880:intron 10.0%
!!! TTTGAATATTATTTTATGTA+AGG + chr2_2:4219901-4219920 Msa0231880:intron 10.0%
!!! TTGAATATTATTTTATGTAA+GGG + chr2_2:4219902-4219921 Msa0231880:intron 10.0%
!!! TAATTTGTTTATTAAAAATC+TGG + chr2_2:4220275-4220294 Msa0231880:intron 10.0%
!!! AATTTGTTTATTAAAAATCT+GGG + chr2_2:4220276-4220295 Msa0231880:intron 10.0%
!! AAAAAAAATAAAATCAAAAC+TGG + chr2_2:4220867-4220886 Msa0231880:intron 10.0%
!! ACTATATATATATACTTAAA+TGG + chr2_2:4220984-4221003 Msa0231880:intron 10.0%
!! CTATATATATATACTTAAAT+GGG + chr2_2:4220985-4221004 Msa0231880:intron 10.0%
!!! TAATTACATTATTTTGAATT+TGG + chr2_2:4222142-4222161 Msa0231880:three_prime_UTR 10.0%
!!! TGAATATTATTTTATGTAAG+GGG + chr2_2:4219903-4219922 Msa0231880:intron 15.0%
!!! ATGTACATATTTGATTTATT+TGG + chr2_2:4221313-4221332 Msa0231880:intron 15.0%
!!! TGTACATATTTGATTTATTT+GGG + chr2_2:4221314-4221333 Msa0231880:intron 15.0%
!!! TCTTTATTTTATATTAGTCT+AGG - chr2_2:4221664-4221683 None:intergenic 15.0%
!! TTCTTTCATAAACAAAAATA+AGG - chr2_2:4221713-4221732 None:intergenic 15.0%
!! TGCAAGATTATAATTTATTA+GGG - chr2_2:4221923-4221942 None:intergenic 15.0%
!! TTGCAAGATTATAATTTATT+AGG - chr2_2:4221924-4221943 None:intergenic 15.0%
!!! TCCATTTCAATTTTAAATCT+AGG + chr2_2:4219289-4219308 Msa0231880:intron 20.0%
!!! CCATTTCAATTTTAAATCTA+GGG + chr2_2:4219290-4219309 Msa0231880:intron 20.0%
!!! GGAGAATTTTATATTCATAA+GGG + chr2_2:4219603-4219622 Msa0231880:intron 20.0%
!! TAAATCAAATATGTACATGT+TGG - chr2_2:4221311-4221330 None:intergenic 20.0%
!!! TTGTCTTATCTTACATTTTT+AGG + chr2_2:4221595-4221614 Msa0231880:intron 20.0%
!! TTTCATAAACAAAAATAAGG+CGG - chr2_2:4221710-4221729 None:intergenic 20.0%
!! ATGTTTAAAAGCAGTTATTT+GGG - chr2_2:4222034-4222053 None:intergenic 20.0%
!! GTTTATTTCGTAATAAATAG+CGG - chr2_2:4222189-4222208 None:intergenic 20.0%
!! CCCTAGATTTAAAATTGAAA+TGG - chr2_2:4219293-4219312 None:intergenic 25.0%
!!! TAAATCTAGGGTTTTCAATT+TGG + chr2_2:4219302-4219321 Msa0231880:intron 25.0%
! TTAATCTGAGTCGTTAATTT+GGG - chr2_2:4219338-4219357 None:intergenic 25.0%
!! ATTTTATCGTGAATGAATTC+AGG + chr2_2:4219369-4219388 Msa0231880:intron 25.0%
!! TTTTATCGTGAATGAATTCA+GGG + chr2_2:4219370-4219389 Msa0231880:intron 25.0%
! CAAACCTGATATTCAATTAA+CGG - chr2_2:4219461-4219480 None:intergenic 25.0%
!! CGGAGAATTTTATATTCATA+AGG + chr2_2:4219602-4219621 Msa0231880:intron 25.0%
! AAAATTGTCATAGACCAAAT+TGG - chr2_2:4219785-4219804 None:intergenic 25.0%
!! TTTTTGTCTGAGAGTAAATT+GGG - chr2_2:4219815-4219834 None:intergenic 25.0%
!!! TTTTTTGTCTGAGAGTAAAT+TGG - chr2_2:4219816-4219835 None:intergenic 25.0%
!! GCGTTACTATCATAATTTTT+GGG + chr2_2:4220053-4220072 Msa0231880:intron 25.0%
!!! TCATAATTTTTGGGCTATTT+TGG + chr2_2:4220062-4220081 Msa0231880:intron 25.0%
!!! TGGATTTTTTTTTGGTTCAT+TGG - chr2_2:4220121-4220140 None:intergenic 25.0%
!! TTGTTGTTGAGATAAAACAA+GGG - chr2_2:4220349-4220368 None:intergenic 25.0%
!!! TTTGTTGTTGAGATAAAACA+AGG - chr2_2:4220350-4220369 None:intergenic 25.0%
!!! AAAATTAAAAATGGTGTTGC+AGG - chr2_2:4220825-4220844 None:intergenic 25.0%
! TACTTAAATGGGAAATAATC+TGG + chr2_2:4220996-4221015 Msa0231880:intron 25.0%
!! GAGATTATGTTAGATTTTTG+TGG + chr2_2:4221096-4221115 Msa0231880:intron 25.0%
!! TTTTACACTATTATTGTGAC+TGG - chr2_2:4221278-4221297 None:intergenic 25.0%
!!! AATTGAGGTTAATTTTAGCA+GGG + chr2_2:4221384-4221403 Msa0231880:intron 25.0%
! CAACATTGTATGAAATTAGT+GGG + chr2_2:4221449-4221468 Msa0231880:intron 25.0%
!!! CTGGACAATATTTTGATTAT+TGG + chr2_2:4221820-4221839 Msa0231880:CDS 25.0%
! AAATTATAATCTTGCAATGC+AGG + chr2_2:4221927-4221946 Msa0231880:intron 25.0%
! CATGTTTAAAAGCAGTTATT+TGG - chr2_2:4222035-4222054 None:intergenic 25.0%
GTTAATCTGAGTCGTTAATT+TGG - chr2_2:4219339-4219358 None:intergenic 30.0%
AAAAATCTCTTCTGATCAAC+AGG - chr2_2:4219407-4219426 None:intergenic 30.0%
AATTCAATGTAATGTAGCGA+AGG + chr2_2:4219668-4219687 Msa0231880:intron 30.0%
!!! GTAATGTTTTAGGAATCATC+TGG + chr2_2:4219690-4219709 Msa0231880:intron 30.0%
ATAAATTAGTCCCTTTGTCT+GGG + chr2_2:4219873-4219892 Msa0231880:intron 30.0%
TCAAATTAATCCCAGACAAA+GGG - chr2_2:4219886-4219905 None:intergenic 30.0%
TTCAAATTAATCCCAGACAA+AGG - chr2_2:4219887-4219906 None:intergenic 30.0%
! ATTCCCTCAATATTTTCTCA+CGG - chr2_2:4219939-4219958 None:intergenic 30.0%
AGGGAATAATTTGAAAATGC+AGG + chr2_2:4219952-4219971 Msa0231880:intron 30.0%
AATTTGAAAATGCAGGTAGA+TGG + chr2_2:4219959-4219978 Msa0231880:intron 30.0%
! GAGTGTTTTCTATATTCTGT+TGG + chr2_2:4219997-4220016 Msa0231880:intron 30.0%
AATGGAACGTGATATAAACA+AGG + chr2_2:4220031-4220050 Msa0231880:intron 30.0%
! GGCGTTACTATCATAATTTT+TGG + chr2_2:4220052-4220071 Msa0231880:intron 30.0%
! TTTGGTTCATTGGATTTATC+CGG - chr2_2:4220111-4220130 None:intergenic 30.0%
!!! TTTCGGGTTGGATTTTTTTT+TGG - chr2_2:4220129-4220148 None:intergenic 30.0%
! ATGAACAACGAGTAATTTTC+GGG - chr2_2:4220145-4220164 None:intergenic 30.0%
! GATGAACAACGAGTAATTTT+CGG - chr2_2:4220146-4220165 None:intergenic 30.0%
GAAAATTACTCGTTGTTCAT+CGG + chr2_2:4220145-4220164 Msa0231880:intron 30.0%
! CAATCTTACTTGGTTCTTTA+CGG - chr2_2:4220188-4220207 None:intergenic 30.0%
ATTATCAATAGCATAGTACC+CGG - chr2_2:4220259-4220278 None:intergenic 30.0%
GAGATAAAACAAGGGTTTAA+CGG - chr2_2:4220341-4220360 None:intergenic 30.0%
TTAGTTGTTCTATTCTGTCT+TGG + chr2_2:4220566-4220585 Msa0231880:intron 30.0%
!! TAGTAGAAAGTGGGTTTTAT+GGG + chr2_2:4220620-4220639 Msa0231880:intron 30.0%
ACTTAAAAACTACAGCAAAG+TGG + chr2_2:4220734-4220753 Msa0231880:intron 30.0%
AAATGGGAAATAATCTGGTA+TGG + chr2_2:4221001-4221020 Msa0231880:intron 30.0%
! CAAATATGTACATGTTGGTT+TGG - chr2_2:4221306-4221325 None:intergenic 30.0%
! TTGATTTATTTGGGTTTCCT+AGG + chr2_2:4221323-4221342 Msa0231880:intron 30.0%
!! GAATTGAGGTTAATTTTAGC+AGG + chr2_2:4221383-4221402 Msa0231880:intron 30.0%
!! ATTGAGGTTAATTTTAGCAG+GGG + chr2_2:4221385-4221404 Msa0231880:intron 30.0%
CCACTAATTTCATACAATGT+TGG - chr2_2:4221451-4221470 None:intergenic 30.0%
CCAACATTGTATGAAATTAG+TGG + chr2_2:4221448-4221467 Msa0231880:intron 30.0%
TCCATTTATACACTAACTCA+GGG - chr2_2:4221512-4221531 None:intergenic 30.0%
AATAAAGAGAAGCTCTATTG+CGG + chr2_2:4221533-4221552 Msa0231880:intron 30.0%
GTAATTCTCTAAATTGCTAC+AGG + chr2_2:4221749-4221768 Msa0231880:intron 30.0%
GAGAAAATCAAGTAGCTAAA+TGG - chr2_2:4221893-4221912 None:intergenic 30.0%
! TTCAGTTTGGTGAATAACTT+TGG - chr2_2:4221958-4221977 None:intergenic 30.0%
ATTCACCAAACTGAAGTAAT+AGG + chr2_2:4221963-4221982 Msa0231880:exon 30.0%
TTCACCAAACTGAAGTAATA+GGG + chr2_2:4221964-4221983 Msa0231880:exon 30.0%
GGAATGAAGATAAAACAGAA+TGG - chr2_2:4222013-4222032 None:intergenic 30.0%
ATGAGCAAAATAACCATACA+GGG - chr2_2:4222081-4222100 None:intergenic 30.0%
AATGAGCAAAATAACCATAC+AGG - chr2_2:4222082-4222101 None:intergenic 30.0%
!! TGTATGGTTATTTTGCTCAT+TGG + chr2_2:4222081-4222100 Msa0231880:three_prime_UTR 30.0%
!! GTATGGTTATTTTGCTCATT+GGG + chr2_2:4222082-4222101 Msa0231880:three_prime_UTR 30.0%
GTATTGCAGAATCGTAACTT+GGG - chr2_2:4219169-4219188 None:intergenic 35.0%
!! TTGATGATGTTGTTTCGTTG+TGG - chr2_2:4219191-4219210 None:intergenic 35.0%
!! AAGCTTTGAGACATACATGT+TGG - chr2_2:4219242-4219261 None:intergenic 35.0%
! ATTAACGGTCTGACACATTT+TGG - chr2_2:4219446-4219465 None:intergenic 35.0%
CAGACCGTTAATTGAATATC+AGG + chr2_2:4219454-4219473 Msa0231880:CDS 35.0%
AGGGAGTTATAGTAGCATTA+AGG + chr2_2:4219622-4219641 Msa0231880:intron 35.0%
! TGTAGCGAAGGTAATGTTTT+AGG + chr2_2:4219680-4219699 Msa0231880:intron 35.0%
! GGTCTATGACAATTTTGTTG+CGG + chr2_2:4219789-4219808 Msa0231880:intron 35.0%
AATTTGAAAATGTCAGGGAC+TGG - chr2_2:4219849-4219868 None:intergenic 35.0%
! GTCCCTGACATTTTCAAATT+CGG + chr2_2:4219849-4219868 Msa0231880:intron 35.0%
! TCCCTGACATTTTCAAATTC+GGG + chr2_2:4219850-4219869 Msa0231880:intron 35.0%
TCCCGAATTTGAAAATGTCA+GGG - chr2_2:4219854-4219873 None:intergenic 35.0%
ATCCCGAATTTGAAAATGTC+AGG - chr2_2:4219855-4219874 None:intergenic 35.0%
GATAAATTAGTCCCTTTGTC+TGG + chr2_2:4219872-4219891 Msa0231880:intron 35.0%
TGAACCGTGAGAAAATATTG+AGG + chr2_2:4219932-4219951 Msa0231880:intron 35.0%
GAACCGTGAGAAAATATTGA+GGG + chr2_2:4219933-4219952 Msa0231880:intron 35.0%
CTGTTGGAAATCTGACTTAA+TGG + chr2_2:4220013-4220032 Msa0231880:intron 35.0%
!!! TTTTTGGGCTATTTTGGAAC+AGG + chr2_2:4220068-4220087 Msa0231880:intron 35.0%
CGTAAAGAACCAAGTAAGAT+TGG + chr2_2:4220186-4220205 Msa0231880:intron 35.0%
AACTAAGTTGTAACAAAGCG+TGG - chr2_2:4220552-4220571 None:intergenic 35.0%
TTGTTCTATTCTGTCTTGGA+TGG + chr2_2:4220570-4220589 Msa0231880:intron 35.0%
TGTTCTATTCTGTCTTGGAT+GGG + chr2_2:4220571-4220590 Msa0231880:intron 35.0%
!! GTAGTAGAAAGTGGGTTTTA+TGG + chr2_2:4220619-4220638 Msa0231880:intron 35.0%
!! AGTAGAAAGTGGGTTTTATG+GGG + chr2_2:4220621-4220640 Msa0231880:intron 35.0%
CGGATCTAGACAATAGATAT+TGG + chr2_2:4220658-4220677 Msa0231880:intron 35.0%
CTAGACAATAGATATTGGTG+TGG + chr2_2:4220663-4220682 Msa0231880:intron 35.0%
AAAACTACAGCAAAGTGGTT+TGG + chr2_2:4220739-4220758 Msa0231880:intron 35.0%
AAACTACAGCAAAGTGGTTT+GGG + chr2_2:4220740-4220759 Msa0231880:intron 35.0%
GCATTATACCATGGAGTTAA+AGG + chr2_2:4220768-4220787 Msa0231880:intron 35.0%
!! TTAAAAATGGTGTTGCAGGA+GGG - chr2_2:4220821-4220840 None:intergenic 35.0%
!! ATTAAAAATGGTGTTGCAGG+AGG - chr2_2:4220822-4220841 None:intergenic 35.0%
!!! GAAATTTGGCTTTTGGATGT+CGG + chr2_2:4221074-4221093 Msa0231880:intron 35.0%
! TCTCTATTTCTCTCTGGTTT+GGG + chr2_2:4221126-4221145 Msa0231880:intron 35.0%
AATACGGGTTCATTAGGTTT+AGG - chr2_2:4221231-4221250 None:intergenic 35.0%
TGATGAAATACGGGTTCATT+AGG - chr2_2:4221237-4221256 None:intergenic 35.0%
TAATGAACCCGTATTTCATC+AGG + chr2_2:4221236-4221255 Msa0231880:intron 35.0%
AAGCTAACCTGATGAAATAC+GGG - chr2_2:4221246-4221265 None:intergenic 35.0%
CAAGCTAACCTGATGAAATA+CGG - chr2_2:4221247-4221266 None:intergenic 35.0%
! ATTTGGGTTTCCTAGGTATA+TGG + chr2_2:4221330-4221349 Msa0231880:intron 35.0%
TCTCAACTCAAAAAAGGGAA+GGG - chr2_2:4221425-4221444 None:intergenic 35.0%
GGTTCTCTCAACTCAAAAAA+GGG - chr2_2:4221430-4221449 None:intergenic 35.0%
TGGTTCTCTCAACTCAAAAA+AGG - chr2_2:4221431-4221450 None:intergenic 35.0%
ACCCTGAGTTAGTGTATAAA+TGG + chr2_2:4221508-4221527 Msa0231880:intron 35.0%
GTCCATTTATACACTAACTC+AGG - chr2_2:4221513-4221532 None:intergenic 35.0%
ATAAAGAGAAGCTCTATTGC+GGG + chr2_2:4221534-4221553 Msa0231880:intron 35.0%
TTGCTATCTTGTGATTTGAG+TGG - chr2_2:4221627-4221646 None:intergenic 35.0%
TCACCAAACTGAAGTAATAG+GGG + chr2_2:4221965-4221984 Msa0231880:exon 35.0%
!! ATTGGGAAATTTTGATCCCA+TGG + chr2_2:4222099-4222118 Msa0231880:three_prime_UTR 35.0%
TAATCATCCAATGTCTCCAT+GGG - chr2_2:4222118-4222137 None:intergenic 35.0%
ATAATCATCCAATGTCTCCA+TGG - chr2_2:4222119-4222138 None:intergenic 35.0%
TCGATCGGGTTTCTCTATTT+CGG - chr2_2:4219107-4219126 None:intergenic 40.0%
AGTCTGTCTCCTATTCCATT+CGG - chr2_2:4219132-4219151 None:intergenic 40.0%
GGTATTGCAGAATCGTAACT+TGG - chr2_2:4219170-4219189 None:intergenic 40.0%
! CTGAGTCGTTAATTTGGGAT+CGG - chr2_2:4219333-4219352 None:intergenic 40.0%
! ATGTTGTTTGTAGCTGAGCT+CGG - chr2_2:4219745-4219764 None:intergenic 40.0%
CTCAGCTACAAACAACATGA+CGG + chr2_2:4219747-4219766 Msa0231880:intron 40.0%
!!! ACAACGAGTAATTTTCGGGT+TGG - chr2_2:4220141-4220160 None:intergenic 40.0%
! TTACTCGTTGTTCATCGGTT+TGG + chr2_2:4220150-4220169 Msa0231880:intron 40.0%
!! TACTCGTTGTTCATCGGTTT+GGG + chr2_2:4220151-4220170 Msa0231880:intron 40.0%
! GAACCAAGTAAGATTGGTTC+CGG + chr2_2:4220192-4220211 Msa0231880:intron 40.0%
!! GTTTAACGGAGTAATGGACT+GGG - chr2_2:4220327-4220346 None:intergenic 40.0%
ACAAGGGTTTAACGGAGTAA+TGG - chr2_2:4220333-4220352 None:intergenic 40.0%
GCTTGTGAGTAGTAGAAAGT+GGG + chr2_2:4220611-4220630 Msa0231880:intron 40.0%
GAATCGAACCTTTAACTCCA+TGG - chr2_2:4220779-4220798 None:intergenic 40.0%
!! GGGTTAAAAATGGTGTTGCA+GGG - chr2_2:4220801-4220820 None:intergenic 40.0%
!! AGGGTTAAAAATGGTGTTGC+AGG - chr2_2:4220802-4220821 None:intergenic 40.0%
TGTTGCAGGAGGGTTAAAAA+TGG - chr2_2:4220811-4220830 None:intergenic 40.0%
! AAGTTTCTTCGTTAGCCTAG+CGG - chr2_2:4220945-4220964 None:intergenic 40.0%
ATACAGTGTGAAACATGGTG+TGG - chr2_2:4221033-4221052 None:intergenic 40.0%
! CTCTTCTCTCTATTTCTCTC+TGG + chr2_2:4221120-4221139 Msa0231880:intron 40.0%
! CTCTCTATTTCTCTCTGGTT+TGG + chr2_2:4221125-4221144 Msa0231880:intron 40.0%
CAGTAGAGAGGTTGAGTTAT+GGG + chr2_2:4221156-4221175 Msa0231880:intron 40.0%
AGTAGAGAGGTTGAGTTATG+GGG + chr2_2:4221157-4221176 Msa0231880:intron 40.0%
GTTCATTAGGTTTAGGTGGT+CGG - chr2_2:4221224-4221243 None:intergenic 40.0%
! CGTATTTCATCAGGTTAGCT+TGG + chr2_2:4221245-4221264 Msa0231880:intron 40.0%
!! TTCATCAGGTTAGCTTGGTT+CGG + chr2_2:4221250-4221269 Msa0231880:intron 40.0%
ATCAGCTGTGTGTTGAATTG+AGG + chr2_2:4221369-4221388 Msa0231880:intron 40.0%
CTCAACTCAAAAAAGGGAAG+GGG - chr2_2:4221424-4221443 None:intergenic 40.0%
CTCTCAACTCAAAAAAGGGA+AGG - chr2_2:4221426-4221445 None:intergenic 40.0%
GAAATTAGTGGGAAAACCGT+AGG + chr2_2:4221460-4221479 Msa0231880:intron 40.0%
GCTAAACAAGTCAGAACCTA+CGG - chr2_2:4221479-4221498 None:intergenic 40.0%
ACCTGCAATAGACACACATT+GGG - chr2_2:4221576-4221595 None:intergenic 40.0%
AACCTGCAATAGACACACAT+TGG - chr2_2:4221577-4221596 None:intergenic 40.0%
! ATTAGTCTAGGCGCAACAAT+TGG - chr2_2:4221652-4221671 None:intergenic 40.0%
GCATGCATGAAAAGGATACA+TGG + chr2_2:4221771-4221790 Msa0231880:CDS 40.0%
! AGGATACATGGTGATGATTC+TGG + chr2_2:4221783-4221802 Msa0231880:CDS 40.0%
! GGATACATGGTGATGATTCT+GGG + chr2_2:4221784-4221803 Msa0231880:CDS 40.0%
TCTCCCCTATTACTTCAGTT+TGG - chr2_2:4221971-4221990 None:intergenic 40.0%
AGTAATAGGGGAGAATGTGT+TGG + chr2_2:4221977-4221996 Msa0231880:exon 40.0%
! TTTTGATCCCATGGAGACAT+TGG + chr2_2:4222108-4222127 Msa0231880:three_prime_UTR 40.0%
ATAAATAGCGGTGCTCATGA+AGG - chr2_2:4222177-4222196 None:intergenic 40.0%
! TATTCCATTCGGGTTCGATC+GGG - chr2_2:4219121-4219140 None:intergenic 45.0%
! CTATTCCATTCGGGTTCGAT+CGG - chr2_2:4219122-4219141 None:intergenic 45.0%
GTCTGTCTCCTATTCCATTC+GGG - chr2_2:4219131-4219150 None:intergenic 45.0%
GAATGAATTCAGGGCTGATG+AGG + chr2_2:4219379-4219398 Msa0231880:intron 45.0%
ACAACATGACGGTCCAATGA+CGG + chr2_2:4219758-4219777 Msa0231880:intron 45.0%
AGACCAAATTGGACCGTCAT+TGG - chr2_2:4219774-4219793 None:intergenic 45.0%
!! GAAAATGTCAGGGACTGGTT+TGG - chr2_2:4219844-4219863 None:intergenic 45.0%
!!! GGCTATTTTGGAACAGGCTA+GGG + chr2_2:4220074-4220093 Msa0231880:intron 45.0%
!!! GCTATTTTGGAACAGGCTAG+GGG + chr2_2:4220075-4220094 Msa0231880:intron 45.0%
TCACCGGAACCAATCTTACT+TGG - chr2_2:4220198-4220217 None:intergenic 45.0%
! TAAGATTGGTTCCGGTGACA+GGG + chr2_2:4220200-4220219 Msa0231880:intron 45.0%
!! ATGGACTGGGTCACGATAAT+AGG - chr2_2:4220314-4220333 None:intergenic 45.0%
!! GGTTTAACGGAGTAATGGAC+TGG - chr2_2:4220328-4220347 None:intergenic 45.0%
ACGATGAGAAGAGAAGACTG+GGG - chr2_2:4220381-4220400 None:intergenic 45.0%
GACGATGAGAAGAGAAGACT+GGG - chr2_2:4220382-4220401 None:intergenic 45.0%
AGACGATGAGAAGAGAAGAC+TGG - chr2_2:4220383-4220402 None:intergenic 45.0%
TCTATTCTGTCTTGGATGGG+TGG + chr2_2:4220574-4220593 Msa0231880:intron 45.0%
GGCTTGTGAGTAGTAGAAAG+TGG + chr2_2:4220610-4220629 Msa0231880:intron 45.0%
!! GAAAGTGGGTTTTATGGGGA+CGG + chr2_2:4220625-4220644 Msa0231880:intron 45.0%
!! TGGGTGAGAGCATTATACCA+TGG + chr2_2:4220759-4220778 Msa0231880:intron 45.0%
!!! GGTGGTGGAAATTTGGCTTT+TGG + chr2_2:4221067-4221086 Msa0231880:intron 45.0%
TTGGGATAGATGCAGTAGAG+AGG + chr2_2:4221144-4221163 Msa0231880:intron 45.0%
GCAGTAGAGAGGTTGAGTTA+TGG + chr2_2:4221155-4221174 Msa0231880:intron 45.0%
ACGGGTTCATTAGGTTTAGG+TGG - chr2_2:4221228-4221247 None:intergenic 45.0%
!! TCATCAGGTTAGCTTGGTTC+GGG + chr2_2:4221251-4221270 Msa0231880:intron 45.0%
GGGTTTCCTAGGTATATGGA+TGG + chr2_2:4221334-4221353 Msa0231880:intron 45.0%
GTCTCTCCATCCATATACCT+AGG - chr2_2:4221343-4221362 None:intergenic 45.0%
GTATATGGATGGAGAGACGA+TGG + chr2_2:4221345-4221364 Msa0231880:intron 45.0%
TGCTACAGGCATGCATGAAA+AGG + chr2_2:4221763-4221782 Msa0231880:intron 45.0%
ACCAAAACTCATGCCCTGTA+TGG + chr2_2:4222065-4222084 Msa0231880:three_prime_UTR 45.0%
! ACCATACAGGGCATGAGTTT+TGG - chr2_2:4222069-4222088 None:intergenic 45.0%
!! AAATAAAATTTATTATCATA+TGG + chr2_2:4219526-4219545 Msa0231880:intron 5.0%
CGATCGAACCCGAATGGAAT+AGG + chr2_2:4219120-4219139 Msa0231880:five_prime_UTR 50.0%
GGTCCAATGACGGTCCAATT+TGG + chr2_2:4219768-4219787 Msa0231880:intron 50.0%
!!! GGGCTATTTTGGAACAGGCT+AGG + chr2_2:4220073-4220092 Msa0231880:intron 50.0%
GAACAGGCTAGGGGTTTAAG+TGG + chr2_2:4220084-4220103 Msa0231880:intron 50.0%
! GTAAGATTGGTTCCGGTGAC+AGG + chr2_2:4220199-4220218 Msa0231880:intron 50.0%
CAGCCTTGAAAACAAGCACC+CGG + chr2_2:4220226-4220245 Msa0231880:intron 50.0%
!! TGACCGGGTGCTTGTTTTCA+AGG - chr2_2:4220232-4220251 None:intergenic 50.0%
GTCGCACACTCGTATCAATG+TGG + chr2_2:4220449-4220468 Msa0231880:intron 50.0%
AGAGTGGGATGTTCGGAGAA+CGG - chr2_2:4220494-4220513 None:intergenic 50.0%
GTAACAAAGCGTGGTTGCGT+GGG - chr2_2:4220543-4220562 None:intergenic 50.0%
TGTAACAAAGCGTGGTTGCG+TGG - chr2_2:4220544-4220563 None:intergenic 50.0%
ATGGGTGGCTATGGAAGTCA+CGG + chr2_2:4220589-4220608 Msa0231880:intron 50.0%
! TTTTATGGGGACGGTGGTCA+TGG + chr2_2:4220634-4220653 Msa0231880:intron 50.0%
TTTATGGGGACGGTGGTCAT+GGG + chr2_2:4220635-4220654 Msa0231880:intron 50.0%
ACTCGCTGAGAGTTGAACAG+AGG + chr2_2:4220891-4220910 Msa0231880:intron 50.0%
! GTTAGCCTAGCGGTTACGTT+TGG - chr2_2:4220935-4220954 None:intergenic 50.0%
GGCGGATACAGTGTGAAACA+TGG - chr2_2:4221038-4221057 None:intergenic 50.0%
AATTTCCACCACCACCGTCA+GGG - chr2_2:4221060-4221079 None:intergenic 50.0%
AAATTTCCACCACCACCGTC+AGG - chr2_2:4221061-4221080 None:intergenic 50.0%
!! TGACGGTGGTGGTGGAAATT+TGG + chr2_2:4221060-4221079 Msa0231880:intron 50.0%
AGAAGCTCTATTGCGGGTCT+GGG + chr2_2:4221540-4221559 Msa0231880:intron 50.0%
GCCCAATGTGTGTCTATTGC+AGG + chr2_2:4221572-4221591 Msa0231880:intron 50.0%
GAAACCCGATCGAACCCGAA+TGG + chr2_2:4219114-4219133 Msa0231880:five_prime_UTR 55.0%
GGCTAGGGGTTTAAGTGGAC+CGG + chr2_2:4220089-4220108 Msa0231880:intron 55.0%
!! CGGGTGCTTGTTTTCAAGGC+TGG - chr2_2:4220228-4220247 None:intergenic 55.0%
ATAGTACCCGGTCACTGACC+GGG - chr2_2:4220247-4220266 None:intergenic 55.0%
CATAGTACCCGGTCACTGAC+CGG - chr2_2:4220248-4220267 None:intergenic 55.0%
TCCACCATCTTCTCTGACCC+AGG + chr2_2:4220402-4220421 Msa0231880:intron 55.0%
CCACCATCTTCTCTGACCCA+GGG + chr2_2:4220403-4220422 Msa0231880:intron 55.0%
TTGATACGAGTGTGCGACGC+TGG - chr2_2:4220447-4220466 None:intergenic 55.0%
GAGTGGGATGTTCGGAGAAC+GGG - chr2_2:4220493-4220512 None:intergenic 55.0%
CTGTCTTGGATGGGTGGCTA+TGG + chr2_2:4220580-4220599 Msa0231880:intron 55.0%
!! AGTGGGTTTTATGGGGACGG+TGG + chr2_2:4220628-4220647 Msa0231880:intron 55.0%
! CTAGCGGTTACGTTTGGTGG+TGG - chr2_2:4220929-4220948 None:intergenic 55.0%
CACCACCAAACGTAACCGCT+AGG + chr2_2:4220927-4220946 Msa0231880:intron 55.0%
AGCCTAGCGGTTACGTTTGG+TGG - chr2_2:4220932-4220951 None:intergenic 55.0%
ATTTCCACCACCACCGTCAG+GGG - chr2_2:4221059-4221078 None:intergenic 55.0%
GAGAAGCTCTATTGCGGGTC+TGG + chr2_2:4221539-4221558 Msa0231880:intron 55.0%
GAAGCTCTATTGCGGGTCTG+GGG + chr2_2:4221541-4221560 Msa0231880:intron 55.0%
TCTATTGCGGGTCTGGGGAA+GGG + chr2_2:4221546-4221565 Msa0231880:intron 55.0%
TCTGGGCAGAAACACTGCAC+TGG + chr2_2:4221801-4221820 Msa0231880:CDS 55.0%
AGCGGTGCTCATGAAGGAAG+TGG - chr2_2:4222171-4222190 None:intergenic 55.0%
CAAGGCTGGAACCCTGTCAC+CGG - chr2_2:4220214-4220233 None:intergenic 60.0%
ACAAGCACCCGGTCAGTGAC+CGG + chr2_2:4220237-4220256 Msa0231880:intron 60.0%
CCCTGGGTCAGAGAAGATGG+TGG - chr2_2:4220406-4220425 None:intergenic 60.0%
GAGAACGGGTGTGCGATGGA+GGG - chr2_2:4220479-4220498 None:intergenic 60.0%
TTCGGAGAACGGGTGTGCGA+TGG - chr2_2:4220483-4220502 None:intergenic 60.0%
GCGAGGCAGAGTGGGATGTT+CGG - chr2_2:4220501-4220520 None:intergenic 60.0%
CGGAAAAGGCGAGGCAGAGT+GGG - chr2_2:4220509-4220528 None:intergenic 60.0%
ACGGAAAAGGCGAGGCAGAG+TGG - chr2_2:4220510-4220529 None:intergenic 60.0%
TAGGACGGACGGAAAAGGCG+AGG - chr2_2:4220518-4220537 None:intergenic 60.0%
GGGACTAGGACGGACGGAAA+AGG - chr2_2:4220523-4220542 None:intergenic 60.0%
TTGCGTGGGACTAGGACGGA+CGG - chr2_2:4220529-4220548 None:intergenic 60.0%
GTGGTTGCGTGGGACTAGGA+CGG - chr2_2:4220533-4220552 None:intergenic 60.0%
AAGCGTGGTTGCGTGGGACT+AGG - chr2_2:4220537-4220556 None:intergenic 60.0%
!! GTTTGGTGGTGGTGGCTTGC+AGG - chr2_2:4220918-4220937 None:intergenic 60.0%
!! GCGGTTACGTTTGGTGGTGG+TGG - chr2_2:4220926-4220945 None:intergenic 60.0%
CACACTGTATCCGCCCCTGA+CGG + chr2_2:4221043-4221062 Msa0231880:intron 60.0%
CTCTATTGCGGGTCTGGGGA+AGG + chr2_2:4221545-4221564 Msa0231880:intron 60.0%
GTTGGTGCGCGAGCGATGAG+AGG - chr2_2:4219224-4219243 None:intergenic 65.0%
CAAGCACCCGGTCAGTGACC+GGG + chr2_2:4220238-4220257 Msa0231880:intron 65.0%
GGGCCCTGGGTCAGAGAAGA+TGG - chr2_2:4220409-4220428 None:intergenic 65.0%
TCGTCAGAGGGAAGGGCCCT+GGG - chr2_2:4220422-4220441 None:intergenic 65.0%
! GCTGGCCTCGTCAGAGGGAA+GGG - chr2_2:4220429-4220448 None:intergenic 65.0%
ACGGGTGTGCGATGGAGGGA+AGG - chr2_2:4220475-4220494 None:intergenic 65.0%
GGAGAACGGGTGTGCGATGG+AGG - chr2_2:4220480-4220499 None:intergenic 65.0%
ATGGGGACGGTGGTCATGGG+CGG + chr2_2:4220638-4220657 Msa0231880:intron 65.0%
ACTGTATCCGCCCCTGACGG+TGG + chr2_2:4221046-4221065 Msa0231880:intron 65.0%
TTGCGGGTCTGGGGAAGGGT+AGG + chr2_2:4221550-4221569 Msa0231880:intron 65.0%
CTCGTCAGAGGGAAGGGCCC+TGG - chr2_2:4220423-4220442 None:intergenic 70.0%
CAGGGCCCTTCCCTCTGACG+AGG + chr2_2:4220421-4220440 Msa0231880:intron 70.0%
! CGCTGGCCTCGTCAGAGGGA+AGG - chr2_2:4220430-4220449 None:intergenic 70.0%
! GCGACGCTGGCCTCGTCAGA+GGG - chr2_2:4220434-4220453 None:intergenic 70.0%
! TGCGACGCTGGCCTCGTCAG+AGG - chr2_2:4220435-4220454 None:intergenic 70.0%
GTATCCGCCCCTGACGGTGG+TGG + chr2_2:4221049-4221068 Msa0231880:intron 70.0%
TCCACCACCACCGTCAGGGG+CGG - chr2_2:4221056-4221075 None:intergenic 70.0%
! TCCGCCCCTGACGGTGGTGG+TGG + chr2_2:4221052-4221071 Msa0231880:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 4219104 4222223 4219104 ID=Msa0231880;Name=Msa0231880
chr2_2 mRNA 4219104 4222223 4219104 ID=Msa0231880-mRNA-1;Parent=Msa0231880;Name=Msa0231880-mRNA-1;_AED=0.04;_eAED=0.04;_QI=140|1|1|1|0.66|0.75|4|242|69
chr2_2 exon 4219104 4219245 4219104 ID=Msa0231880-mRNA-1:exon:1719;Parent=Msa0231880-mRNA-1
chr2_2 exon 4219391 4219475 4219391 ID=Msa0231880-mRNA-1:exon:1720;Parent=Msa0231880-mRNA-1
chr2_2 exon 4221771 4221860 4221771 ID=Msa0231880-mRNA-1:exon:1721;Parent=Msa0231880-mRNA-1
chr2_2 exon 4221949 4222223 4221949 ID=Msa0231880-mRNA-1:exon:1722;Parent=Msa0231880-mRNA-1
chr2_2 five_prime_UTR 4219104 4219243 4219104 ID=Msa0231880-mRNA-1:five_prime_utr;Parent=Msa0231880-mRNA-1
chr2_2 CDS 4219244 4219245 4219244 ID=Msa0231880-mRNA-1:cds;Parent=Msa0231880-mRNA-1
chr2_2 CDS 4219391 4219475 4219391 ID=Msa0231880-mRNA-1:cds;Parent=Msa0231880-mRNA-1
chr2_2 CDS 4221771 4221860 4221771 ID=Msa0231880-mRNA-1:cds;Parent=Msa0231880-mRNA-1
chr2_2 CDS 4221949 4221981 4221949 ID=Msa0231880-mRNA-1:cds;Parent=Msa0231880-mRNA-1
chr2_2 three_prime_UTR 4221982 4222223 4221982 ID=Msa0231880-mRNA-1:three_prime_utr;Parent=Msa0231880-mRNA-1
Gene Sequence

>Msa0231880

ATGGCTGATGAGGAACCTGTTGATCAGAAGAGATTTTTTGAAGACTCTTGCAAACCAAAATGTGTCAGACCGTTAATTGAATATCAGGCATGCATGAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTGGACAATATTTTGATTATTGGTATTGTGTTGACAAATGTGTTGCACCAAAGTTATTCACCAAACTGAAGTAA

Protein sequence

>Msa0231880

MADEEPVDQKRFFEDSCKPKCVRPLIEYQACMKRIHGDDSGQKHCTGQYFDYWYCVDKCVAPKLFTKLK*