AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0298700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0298700 MtrunA17_Chr2g0322551 99.213 127 1 0 5 131 224 350 4.30e-90 265
Msa0298700 MtrunA17_Chr2g0322531 86.614 127 17 0 5 131 223 349 1.12e-78 236
Msa0298700 MtrunA17_Chr2g0322541 90.323 124 12 0 5 128 224 347 2.44e-70 216
Msa0298700 MtrunA17_Chr8g0337361 48.800 125 62 1 5 129 277 399 6.01e-33 119
Msa0298700 MtrunA17_Chr8g0337471 47.200 125 64 1 5 129 219 341 2.47e-32 116
Msa0298700 MtrunA17_Chr8g0337491 45.600 125 66 1 5 129 230 352 1.12e-31 115
Msa0298700 MtrunA17_Chr8g0337481 44.800 125 67 1 5 129 160 282 2.09e-31 112
Msa0298700 MtrunA17_Chr5g0445921 40.800 125 72 1 5 129 13 135 1.02e-30 107
Msa0298700 MtrunA17_Chr8g0337371 45.600 125 66 1 5 129 712 834 1.49e-29 112
Msa0298700 MtrunA17_Chr8g0337371 43.307 127 70 1 5 131 265 389 7.97e-29 109
Msa0298700 MtrunA17_Chr2g0307121 38.211 123 74 1 5 127 221 341 1.94e-27 103
Msa0298700 MtrunA17_Chr7g0214831 38.400 125 75 1 5 129 221 343 3.52e-27 102
Msa0298700 MtrunA17_Chr8g0337451 42.400 125 70 1 5 129 219 341 3.96e-27 102
Msa0298700 MtrunA17_Chr4g0043061 40.800 125 72 1 5 129 225 347 9.72e-24 94.0
Msa0298700 MtrunA17_Chr4g0045061 33.333 129 82 2 5 129 494 622 4.96e-14 67.4
Msa0298700 MtrunA17_Chr4g0045041 33.333 129 82 2 5 129 494 622 1.96e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0298700 AT5G16980.1 42.400 125 70 1 5 129 114 236 6.93e-31 110
Msa0298700 AT5G16980.3 42.400 125 70 1 5 129 114 236 6.93e-31 110
Msa0298700 AT5G16980.2 42.400 125 70 1 5 129 180 302 2.64e-30 110
Msa0298700 AT5G16970.1 43.200 125 69 1 5 129 220 342 4.28e-30 110
Msa0298700 AT5G17000.1 43.089 123 68 1 7 129 222 342 6.34e-29 107
Msa0298700 AT5G16990.1 43.089 123 68 1 7 129 220 340 8.87e-29 107
Msa0298700 AT5G37980.1 43.200 125 69 1 5 129 228 350 1.31e-28 107
Msa0298700 AT1G65560.2 44.000 125 69 1 5 129 148 271 3.25e-28 104
Msa0298700 AT1G65560.1 44.000 125 69 1 5 129 224 347 1.13e-27 104
Msa0298700 AT3G03080.1 41.600 125 71 1 5 129 225 347 1.28e-27 104
Msa0298700 AT5G16960.2 40.945 127 73 1 5 131 221 345 1.46e-27 104
Msa0298700 AT5G16960.1 40.945 127 73 1 5 131 221 345 1.46e-27 104
Msa0298700 AT1G26320.2 41.667 120 68 1 5 124 221 338 2.94e-27 103
Msa0298700 AT1G26320.1 41.667 120 68 1 5 124 226 343 3.29e-27 103
Msa0298700 AT5G37940.1 40.800 125 72 1 5 129 228 350 1.05e-26 102
Msa0298700 AT5G38000.2 40.800 125 72 1 5 129 209 331 3.23e-26 100
Msa0298700 AT5G38000.1 40.800 125 72 1 5 129 228 350 4.21e-26 100
Msa0298700 AT3G59845.2 39.344 122 72 1 8 129 124 243 6.89e-23 90.1
Msa0298700 AT5G38000.3 40.708 113 65 1 5 117 228 338 1.09e-22 91.3
Msa0298700 AT3G59845.1 39.344 122 72 1 8 129 226 345 2.08e-22 90.5

Find 121 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCGGAATTGAAGGCTTTC+TGG 0.136264 2_3:-52921059 Msa0298700:CDS
GACCATTCAAGATCGTATTT+TGG 0.231740 2_3:-52919531 Msa0298700:three_prime_UTR
AGACTCGGGTTGTGGCTCTA+TGG 0.317274 2_3:+52920014 None:intergenic
CGGGAAGTTGAAAAGATTAA+AGG 0.317817 2_3:-52919431 Msa0298700:three_prime_UTR
CACTCTGCGCAAATAATATA+TGG 0.328904 2_3:+52920941 None:intergenic
GAATCATATTGGCATCGTTT+TGG 0.344956 2_3:-52921148 Msa0298700:CDS
TGTTAGGAATCTTCTGAATA+TGG 0.367442 2_3:-52921206 Msa0298700:CDS
ACCATTAGTGTGGCCCCATC+AGG 0.376921 2_3:+52919488 None:intergenic
ATTCCTAACACCTTCTCTTT+CGG 0.377412 2_3:+52921219 None:intergenic
CCATGCACTTAATATAAGTT+AGG 0.379896 2_3:+52919320 None:intergenic
AAAAGTTGTTGTTCAAGTTA+AGG 0.388021 2_3:-52920999 Msa0298700:CDS
ACCAACAGATGACAAATATA+TGG 0.390557 2_3:+52920908 None:intergenic
GGACCGAAAGAGAAGGTGTT+AGG 0.392251 2_3:-52921222 Msa0298700:CDS
CTCTGGCTCATGTTGAGACT+CGG 0.404020 2_3:+52919999 None:intergenic
CTCTACCTGTGGAAAATAGT+TGG 0.404296 2_3:+52920766 None:intergenic
CGCCTCAGCACCTCATGCTC+TGG 0.405766 2_3:+52919982 None:intergenic
TCATGGTAGGAGGCAAAGTA+TGG 0.406567 2_3:+52919208 None:intergenic
GACTCGGGTTGTGGCTCTAT+GGG 0.409406 2_3:+52920015 None:intergenic
ACCTGATGGGGCCACACTAA+TGG 0.413649 2_3:-52919489 Msa0298700:three_prime_UTR
ACTTCCCGATCAGCTTCCTC+CGG 0.414865 2_3:+52919446 None:intergenic
ACCATATATTTGTCATCTGT+TGG 0.418357 2_3:-52920909 Msa0298700:three_prime_UTR
AATGTTAGAGCTGGAGAATA+AGG 0.422916 2_3:+52921024 None:intergenic
AAGGGAAGAGGCATCATAAA+CGG 0.426299 2_3:-52919848 Msa0298700:three_prime_UTR
GGTGGGAAAGCAGGTGAGGA+TGG 0.429416 2_3:-52921185 Msa0298700:CDS
TCAAAGAATAAAATAAATAT+CGG 0.432706 2_3:-52921076 Msa0298700:CDS
TAGTGTGGCCCCATCAGGTT+TGG 0.433555 2_3:+52919493 None:intergenic
CAACCCGGAGGAAGCTGATC+GGG 0.439213 2_3:-52919450 Msa0298700:three_prime_UTR
AGAGGCATCATAAACGGGTT+TGG 0.445330 2_3:-52919842 Msa0298700:three_prime_UTR
AAATAGTTGGGAGAGATAAC+TGG 0.445336 2_3:+52920779 None:intergenic
TAGGTTCTAGAGTCGTATCC+TGG 0.445535 2_3:-52919932 Msa0298700:three_prime_UTR
AAAATAAATATCGGAATTGA+AGG 0.446788 2_3:-52921067 Msa0298700:CDS
ATCAATTAAGTTGTAACTCC+TGG 0.450176 2_3:+52919676 None:intergenic
CCGATCAGCTTCCTCCGGGT+TGG 0.451478 2_3:+52919451 None:intergenic
GGGAATGTGGTTCAAATTTG+TGG 0.459453 2_3:-52919716 Msa0298700:three_prime_UTR
CATGTTGTTGGTAGAGGACT+GGG 0.463759 2_3:-52919293 Msa0298700:three_prime_UTR
ACACTAATGGTAGAGCTGAT+TGG 0.470228 2_3:-52919476 Msa0298700:three_prime_UTR
ATGTTATCCCACCAACCAAT+CGG 0.472169 2_3:+52919592 None:intergenic
TTCTAGCATGCTTGTTGACA+TGG 0.473843 2_3:+52921410 None:intergenic
TCTACCTGTGGAAAATAGTT+GGG 0.478162 2_3:+52920767 None:intergenic
CATGCTAGAATACCTCTTTG+TGG 0.481113 2_3:-52921397 Msa0298700:CDS
AGGGAAGAGGCATCATAAAC+GGG 0.482863 2_3:-52919847 Msa0298700:three_prime_UTR
TCCATCTCCCGATTGGTTGG+TGG 0.485188 2_3:-52919600 Msa0298700:three_prime_UTR
CCATCTCCCGATTGGTTGGT+GGG 0.485331 2_3:-52919599 Msa0298700:three_prime_UTR
TTATTCTCCAGCTCTAACAT+TGG 0.488548 2_3:-52921022 Msa0298700:CDS
TCTGAATATGGTGGGAAAGC+AGG 0.489876 2_3:-52921194 Msa0298700:CDS
CTTCCCGATCAGCTTCCTCC+GGG 0.490421 2_3:+52919447 None:intergenic
TCATGTTGAGACTCGGGTTG+TGG 0.491241 2_3:+52920006 None:intergenic
GTCCAAAATACGATCTTGAA+TGG 0.495021 2_3:+52919529 None:intergenic
GAAACAGAGAATAAATAAGA+TGG 0.495276 2_3:+52919799 None:intergenic
GGGAAAGCAGGTGAGGATGG+AGG 0.496125 2_3:-52921182 Msa0298700:CDS
GGAAAGCAGGTGAGGATGGA+GGG 0.498509 2_3:-52921181 Msa0298700:CDS
GCATGGTTGAGAGACTGCCT+TGG 0.505067 2_3:-52919255 Msa0298700:three_prime_UTR
GCTGAGACGGAGAGCTGAGA+GGG 0.505828 2_3:-52920043 Msa0298700:three_prime_UTR
AACAGCTTCCATCTCCCGAT+TGG 0.510426 2_3:-52919607 Msa0298700:three_prime_UTR
CATGGTTGAGAGACTGCCTT+GGG 0.512943 2_3:-52919254 Msa0298700:three_prime_UTR
AAACAGAGAATAAATAAGAT+GGG 0.520520 2_3:+52919800 None:intergenic
GTTTGTCTTGTCACTGTGCA+TGG 0.525119 2_3:-52919894 Msa0298700:three_prime_UTR
GACTGACAGACCTCGCCACC+AGG 0.526146 2_3:-52919694 Msa0298700:three_prime_UTR
GGCAGGAGCATGAGCTGAGA+CGG 0.526208 2_3:-52920056 Msa0298700:three_prime_UTR
ACATGTTGTTGGTAGAGGAC+TGG 0.527780 2_3:-52919294 Msa0298700:three_prime_UTR
TGTTATCCCACCAACCAATC+GGG 0.529272 2_3:+52919593 None:intergenic
AACATATCAGACGAGCCTCC+AGG 0.530021 2_3:+52919914 None:intergenic
GTGACACACTCATGAACAAA+GGG 0.531385 2_3:-52919866 Msa0298700:three_prime_UTR
GGCCCCATCAGGTTTGGTCA+AGG 0.532863 2_3:+52919499 None:intergenic
CCACCTTGACCAAACCTGAT+GGG 0.538050 2_3:-52919502 Msa0298700:three_prime_UTR
AAGTAAACATCAATACCATC+AGG 0.538763 2_3:+52921472 None:intergenic
GCTTCCATCTCCCGATTGGT+TGG 0.539943 2_3:-52919603 Msa0298700:three_prime_UTR
TCTCTCAACCATGCAGAAGA+TGG 0.545130 2_3:+52919264 None:intergenic
GGAACACATGTTGTTGGTAG+AGG 0.546310 2_3:-52919299 Msa0298700:three_prime_UTR
GTGCATGGAACACATGTTGT+TGG 0.546709 2_3:-52919305 Msa0298700:three_prime_UTR
CCCACCAACCAATCGGGAGA+TGG 0.548528 2_3:+52919599 None:intergenic
ACCACCTTGACCAAACCTGA+TGG 0.549887 2_3:-52919503 Msa0298700:three_prime_UTR
CCTAACTTATATTAAGTGCA+TGG 0.553932 2_3:-52919320 Msa0298700:three_prime_UTR
CTGCCTTGGGATATATGAGA+TGG 0.555419 2_3:-52919241 Msa0298700:three_prime_UTR
AAAATACGATCTTGAATGGT+CGG 0.556097 2_3:+52919533 None:intergenic
AATTTGAACCACATTCCCAC+TGG 0.560518 2_3:+52919721 None:intergenic
CCCATCAGGTTTGGTCAAGG+TGG 0.561667 2_3:+52919502 None:intergenic
TTTGGAACTTGGACTTCAGG+AGG 0.561722 2_3:+52919390 None:intergenic
TGCTGAGGCGGATGAACAGA+GGG 0.568120 2_3:-52919969 Msa0298700:three_prime_UTR
TAAATAGTCCAGTGGGAATG+TGG 0.569359 2_3:-52919729 Msa0298700:three_prime_UTR
GAGGGAAGAGGCACCACTGT+AGG 0.569587 2_3:-52919951 Msa0298700:three_prime_UTR
CAGAGCATGAGGTGCTGAGG+CGG 0.570512 2_3:-52919981 Msa0298700:three_prime_UTR
GGCGGATGAACAGAGGGAAG+AGG 0.571028 2_3:-52919963 Msa0298700:three_prime_UTR
AAGATACTTGCAAGAAGGCA+AGG 0.579146 2_3:-52921104 Msa0298700:CDS
CACCTTGACCAAACCTGATG+GGG 0.583143 2_3:-52919501 Msa0298700:three_prime_UTR
AGGAATCTTCTGAATATGGT+GGG 0.584730 2_3:-52921202 Msa0298700:CDS
CCAACCCGGAGGAAGCTGAT+CGG 0.585191 2_3:-52919451 Msa0298700:three_prime_UTR
AGCCAGAGCATGAGGTGCTG+AGG 0.588609 2_3:-52919984 Msa0298700:three_prime_UTR
CACTCATGAACAAAGGGAAG+AGG 0.592127 2_3:-52919860 Msa0298700:three_prime_UTR
CATCATAAACGGGTTTGGAA+AGG 0.592606 2_3:-52919837 Msa0298700:three_prime_UTR
TCTGGCTCATGTTGAGACTC+GGG 0.594548 2_3:+52920000 None:intergenic
TTGTTCATGAGTGTGTCACA+TGG 0.598182 2_3:+52919870 None:intergenic
GAGACGGAGAGCTGAGAGGG+GGG 0.598346 2_3:-52920040 Msa0298700:three_prime_UTR
ATGGAAAGATACTTGCAAGA+AGG 0.598508 2_3:-52921109 Msa0298700:CDS
CTGAGACGGAGAGCTGAGAG+GGG 0.600836 2_3:-52920042 Msa0298700:three_prime_UTR
TGAGATATCATTCCACAAAG+AGG 0.604157 2_3:+52921385 None:intergenic
GTTTACTTTGACAACGTTGG+TGG 0.604763 2_3:-52921457 Msa0298700:CDS
ATTTGTCTAAATAGTCCAGT+GGG 0.606150 2_3:-52919736 Msa0298700:three_prime_UTR
TAGGAATCTTCTGAATATGG+TGG 0.612642 2_3:-52921203 Msa0298700:CDS
TGAGACGGAGAGCTGAGAGG+GGG 0.613004 2_3:-52920041 Msa0298700:three_prime_UTR
TCAACATGAGCCAGAGCATG+AGG 0.615223 2_3:-52919992 Msa0298700:three_prime_UTR
AGTTGTAACTCCTGGTGGCG+AGG 0.618380 2_3:+52919684 None:intergenic
TAGGTTTGGACCGAAAGAGA+AGG 0.619005 2_3:-52921229 Msa0298700:CDS
AAACCATCTCATATATCCCA+AGG 0.621982 2_3:+52919238 None:intergenic
ATGTTGTTGGTAGAGGACTG+GGG 0.622396 2_3:-52919292 Msa0298700:three_prime_UTR
GTGCTGAGGCGGATGAACAG+AGG 0.629659 2_3:-52919970 Msa0298700:three_prime_UTR
TGTGACACACTCATGAACAA+AGG 0.632185 2_3:-52919867 Msa0298700:three_prime_UTR
AAAACACTTGGATTCGACAA+CGG 0.646764 2_3:-52919369 Msa0298700:three_prime_UTR
GATGTTTACTTTGACAACGT+TGG 0.647156 2_3:-52921460 Msa0298700:CDS
AGAGCTGATTGGATCCAACC+CGG 0.654817 2_3:-52919465 Msa0298700:three_prime_UTR
TGTTGTTGGTAGAGGACTGG+GGG 0.663327 2_3:-52919291 Msa0298700:three_prime_UTR
AATCAGCTCTACCATTAGTG+TGG 0.670229 2_3:+52919478 None:intergenic
AATTAAGTTGTAACTCCTGG+TGG 0.675522 2_3:+52919679 None:intergenic
AGCTGAGACGGAGAGCTGAG+AGG 0.675564 2_3:-52920044 Msa0298700:three_prime_UTR
GATTTGTCTAAATAGTCCAG+TGG 0.681605 2_3:-52919737 Msa0298700:three_prime_UTR
AATGATATCTCAATATAACA+AGG 0.691792 2_3:-52921374 Msa0298700:intron
ATATGGTGGGAAAGCAGGTG+AGG 0.703418 2_3:-52921189 Msa0298700:CDS
GTTCTAGAGTCGTATCCTGG+AGG 0.722076 2_3:-52919929 Msa0298700:three_prime_UTR
TACGACTCTAGAACCTACAG+TGG 0.756089 2_3:+52919938 None:intergenic
GTTGTTGGTAGAGGACTGGG+GGG 0.764762 2_3:-52919290 Msa0298700:three_prime_UTR
GCTGATTGGATCCAACCCGG+AGG 0.783975 2_3:-52919462 Msa0298700:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTATCTATTAAATATATTA+AGG - chr2_3:52919681-52919700 Msa0298700:three_prime_UTR 10.0%
!!! TAATAATTTCAATATTTTAC+CGG - chr2_3:52920642-52920661 Msa0298700:intron 10.0%
!!! TTTATTTTATTCCATTTTTA+TGG - chr2_3:52920861-52920880 Msa0298700:three_prime_UTR 10.0%
!!! TTATTTTATTCCATTTTTAT+GGG - chr2_3:52920862-52920881 Msa0298700:three_prime_UTR 10.0%
!! TTTGTGTATTTAATAAATTA+TGG + chr2_3:52921958-52921977 None:intergenic 10.0%
!! TCAAAGAATAAAATAAATAT+CGG - chr2_3:52922170-52922189 Msa0298700:intron 10.0%
!!! ACATAAATTTTAAATAATGA+TGG - chr2_3:52922442-52922461 Msa0298700:intron 10.0%
!!! AGAACAAAATAATTTGTTTT+TGG + chr2_3:52919455-52919474 None:intergenic 15.0%
!! AGAATAACTTCAAAATATAA+TGG - chr2_3:52919833-52919852 Msa0298700:three_prime_UTR 15.0%
!!! TGTTCATAAAATATATTTTG+AGG + chr2_3:52919938-52919957 None:intergenic 15.0%
!!! TTATAATTTTTTAAGGCTAT+TGG + chr2_3:52920173-52920192 None:intergenic 15.0%
!!! CAATGACTTATAATTTTTTA+AGG + chr2_3:52920180-52920199 None:intergenic 15.0%
!! AAACAAATTAAAACAAAAGT+TGG - chr2_3:52920493-52920512 Msa0298700:intron 15.0%
!! AAATATTGAAATTATTAGAC+CGG + chr2_3:52920639-52920658 None:intergenic 15.0%
!! ATAAATAAAATCAATGATGA+TGG - chr2_3:52920773-52920792 Msa0298700:three_prime_UTR 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + chr2_3:52921261-52921280 None:intergenic 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + chr2_3:52921262-52921281 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG + chr2_3:52921352-52921371 None:intergenic 15.0%
!! TTTATTAAATACACAAACTT+CGG - chr2_3:52921961-52921980 Msa0298700:intron 15.0%
!! AATTGTTATAATGTTGTTAT+AGG - chr2_3:52921998-52922017 Msa0298700:intron 15.0%
!!! AATATTTAAGATTATTTTGC+AGG - chr2_3:52922412-52922431 Msa0298700:intron 15.0%
!!! ATATTTAAGATTATTTTGCA+GGG - chr2_3:52922413-52922432 Msa0298700:intron 15.0%
!!! CAAGAAATTTGAATAATTTT+TGG + chr2_3:52923082-52923101 Msa0298710:intron 15.0%
!!! GTTATCCAAATATTTTTCAA+AGG - chr2_3:52919719-52919738 Msa0298700:three_prime_UTR 20.0%
!! AAAACTATTTACCTTAGAAT+TGG - chr2_3:52919756-52919775 Msa0298700:three_prime_UTR 20.0%
!!! TTGAAATAATCTGAAATACT+GGG - chr2_3:52920074-52920093 Msa0298700:intron 20.0%
!!! AATTGATTTGAGGAATTTAA+GGG + chr2_3:52920115-52920134 None:intergenic 20.0%
!!! TGGAATATTGAAGTTAATTT+TGG + chr2_3:52920235-52920254 None:intergenic 20.0%
!! AATTACCTTAATAACTCAAA+CGG + chr2_3:52920319-52920338 None:intergenic 20.0%
!!! TGAGTTATTAAGGTAATTTT+CGG - chr2_3:52920321-52920340 Msa0298700:intron 20.0%
!!! CAAAAGTTGGTAAAAAAAAT+TGG - chr2_3:52920506-52920525 Msa0298700:intron 20.0%
!! AAAAAAAATTGGTGAAAAGA+TGG - chr2_3:52920517-52920536 Msa0298700:intron 20.0%
!! TTCATCTATCATATCTTATT+AGG + chr2_3:52921186-52921205 None:intergenic 20.0%
!! AATAAGATATGATAGATGAA+TGG - chr2_3:52921186-52921205 Msa0298700:CDS 20.0%
!! ATAAGATATGATAGATGAAT+GGG - chr2_3:52921187-52921206 Msa0298700:CDS 20.0%
!!! TATACTTCAAAATTTTCACA+TGG + chr2_3:52921632-52921651 None:intergenic 20.0%
!! AATGATATCTCAATATAACA+AGG - chr2_3:52921872-52921891 Msa0298700:intron 20.0%
!! TTATAATGTTGTTATAGGTT+TGG - chr2_3:52922003-52922022 Msa0298700:intron 20.0%
!! AAAATAAATATCGGAATTGA+AGG - chr2_3:52922179-52922198 Msa0298700:intron 20.0%
!!! GTTCTAAAAAAATTAGTAAG+AGG - chr2_3:52922502-52922521 Msa0298700:intron 20.0%
!! AAAAACATAACCAAAAGATT+AGG + chr2_3:52922755-52922774 Msa0298710:intron 20.0%
!! GTAAATAAAAATGTAGAAGT+GGG + chr2_3:52922919-52922938 Msa0298710:intron 20.0%
!! AGTAAATAAAAATGTAGAAG+TGG + chr2_3:52922920-52922939 Msa0298710:intron 20.0%
!!! CAAATTTCTTGTTTTCTTTA+TGG - chr2_3:52923091-52923110 Msa0298700:intron 20.0%
!! AAACAGAGAATAAATAAGAT+GGG + chr2_3:52923449-52923468 Msa0298710:intron 20.0%
! TATCTAACTTACAAATGAGT+CGG - chr2_3:52919564-52919583 Msa0298700:three_prime_UTR 25.0%
!!! ATTTGGATAACTTTGAGTTT+TGG + chr2_3:52919710-52919729 None:intergenic 25.0%
!! GTTGAAATAATCTGAAATAC+TGG - chr2_3:52920073-52920092 Msa0298700:intron 25.0%
!!! CAATTGATTTGAGGAATTTA+AGG + chr2_3:52920116-52920135 None:intergenic 25.0%
!!! ATATTCACACAATTGATTTG+AGG + chr2_3:52920125-52920144 None:intergenic 25.0%
! ATATTGTTCATCAACACATT+TGG + chr2_3:52920444-52920463 None:intergenic 25.0%
!!! GTTGATGAACAATATTTTAG+AGG - chr2_3:52920449-52920468 Msa0298700:intron 25.0%
!! GATGGTTAGTAATTTCTTTT+TGG - chr2_3:52920535-52920554 Msa0298700:intron 25.0%
!!! AATAAAATCAATGATGATGG+TGG - chr2_3:52920776-52920795 Msa0298700:three_prime_UTR 25.0%
!!! TATTCCATTTTTATGGGTAA+AGG - chr2_3:52920868-52920887 Msa0298700:three_prime_UTR 25.0%
! TGACACCTTAAAATTAGAAT+AGG - chr2_3:52920964-52920983 Msa0298700:three_prime_UTR 25.0%
!! CTTGTCCTATTCTAATTTTA+AGG + chr2_3:52920972-52920991 None:intergenic 25.0%
! GAAACGTAAGAAATTGAAAA+AGG - chr2_3:52920994-52921013 Msa0298700:CDS 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG + chr2_3:52921323-52921342 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG + chr2_3:52921324-52921343 None:intergenic 25.0%
! TTCAAATGGAATTTGAATCT+TGG + chr2_3:52921483-52921502 None:intergenic 25.0%
! ATTCAAATTCCATTTGAAAG+AGG - chr2_3:52921485-52921504 Msa0298700:intron 25.0%
! GAAAGATTCATGACATAAAT+TGG - chr2_3:52921664-52921683 Msa0298700:intron 25.0%
!! TACTTAGACTAGAATTTTAC+AGG - chr2_3:52921745-52921764 Msa0298700:intron 25.0%
!! GTTTTATGCTAGAATCATAT+TGG - chr2_3:52922087-52922106 Msa0298700:intron 25.0%
!! AAAAGTTGTTGTTCAAGTTA+AGG - chr2_3:52922247-52922266 Msa0298700:intron 25.0%
! AATATGTTGATATGTGTTCT+TGG + chr2_3:52922532-52922551 Msa0298710:intron 25.0%
! ATGTGTTCAGATTATACAAT+CGG + chr2_3:52922865-52922884 Msa0298710:intron 25.0%
! AAGCAAGATTTAATGAAAAG+TGG + chr2_3:52922991-52923010 Msa0298710:intron 25.0%
! AAACTATTACGAAGAAAGAA+GGG + chr2_3:52923042-52923061 Msa0298710:intron 25.0%
! GAAACAGAGAATAAATAAGA+TGG + chr2_3:52923450-52923469 Msa0298710:intron 25.0%
ATTGTTCCTGATCTTCTATA+TGG + chr2_3:52919349-52919368 None:intergenic 30.0%
CTATATCCCTCTTAATAGTT+AGG - chr2_3:52919473-52919492 Msa0298700:three_prime_UTR 30.0%
CATATGCCTAACTATTAAGA+GGG + chr2_3:52919482-52919501 None:intergenic 30.0%
ATCTAACTTACAAATGAGTC+GGG - chr2_3:52919565-52919584 Msa0298700:three_prime_UTR 30.0%
TAAACTTAAAGTTACCCAAG+TGG + chr2_3:52919593-52919612 None:intergenic 30.0%
! CTGCTCCTTTGAAAAATATT+TGG + chr2_3:52919727-52919746 None:intergenic 30.0%
GTTGTGTTTAACTCATTTCA+GGG + chr2_3:52919791-52919810 None:intergenic 30.0%
AGTTGTGTTTAACTCATTTC+AGG + chr2_3:52919792-52919811 None:intergenic 30.0%
TTGAGGAATTTAAGGGTTAT+TGG + chr2_3:52920108-52920127 None:intergenic 30.0%
!!! TTGAAGTTAATTTTGGTTGC+AGG + chr2_3:52920228-52920247 None:intergenic 30.0%
ATTTCCGAGGTTATATATGA+CGG - chr2_3:52920377-52920396 Msa0298700:intron 30.0%
AATACCGTCATATATAACCT+CGG + chr2_3:52920384-52920403 None:intergenic 30.0%
CATTTGGTCTCTAAATTCTT+TGG + chr2_3:52920428-52920447 None:intergenic 30.0%
!! AATATTTTACCGGTTGAGTT+GGG - chr2_3:52920652-52920671 Msa0298700:intron 30.0%
!! CATAGTTTGTAGCTTTATCA+AGG - chr2_3:52920835-52920854 Msa0298700:three_prime_UTR 30.0%
TCTTCCTTTACCCATAAAAA+TGG + chr2_3:52920875-52920894 None:intergenic 30.0%
ATTCTTCTCAATTCTGATTC+TGG + chr2_3:52920907-52920926 None:intergenic 30.0%
TACCAAAGACATCAGAAATT+AGG - chr2_3:52921028-52921047 Msa0298700:CDS 30.0%
ATCCTAATTTCTGATGTCTT+TGG + chr2_3:52921033-52921052 None:intergenic 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + chr2_3:52921230-52921249 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr2_3:52921231-52921250 None:intergenic 30.0%
ATATAGGTACCTCTTTCAAA+TGG + chr2_3:52921497-52921516 None:intergenic 30.0%
! TTATCCTATTTGAGACATGT+CGG + chr2_3:52921527-52921546 None:intergenic 30.0%
ATGTTAAGTAGAATGTTCGT+AGG - chr2_3:52921549-52921568 Msa0298700:intron 30.0%
! TTTTACAGGTATTTTCCTGA+TGG - chr2_3:52921759-52921778 Msa0298700:intron 30.0%
AAGTAAACATCAATACCATC+AGG + chr2_3:52921777-52921796 None:intergenic 30.0%
! CGTTTAAAATGCAGTTGATA+AGG + chr2_3:52921917-52921936 None:intergenic 30.0%
TGTTAGGAATCTTCTGAATA+TGG - chr2_3:52922040-52922059 Msa0298700:intron 30.0%
! TGGAGATTTTGCTAAAGATA+TGG - chr2_3:52922118-52922137 Msa0298700:intron 30.0%
ACCATATATTTGTCATCTGT+TGG - chr2_3:52922337-52922356 Msa0298700:intron 30.0%
ACCAACAGATGACAAATATA+TGG + chr2_3:52922341-52922360 Msa0298710:intron 30.0%
! TCTTCTGTTTCAAACTTTTC+TGG - chr2_3:52922360-52922379 Msa0298700:intron 30.0%
!! TTAAGATTATTTTGCAGGGA+CGG - chr2_3:52922417-52922436 Msa0298700:intron 30.0%
!!! TTTTTTTAGAACTCTACCTG+TGG + chr2_3:52922494-52922513 Msa0298710:intron 30.0%
GACGTAGTTATAGACAAAAT+TGG + chr2_3:52922700-52922719 Msa0298710:intron 30.0%
!!! AAACTTGTTGCCTAATCTTT+TGG - chr2_3:52922742-52922761 Msa0298700:intron 30.0%
! TTTTAATCTGTGACAGTCTA+AGG - chr2_3:52922772-52922791 Msa0298700:intron 30.0%
CAAATACAAGGAAAGAATGA+GGG + chr2_3:52922810-52922829 Msa0298710:intron 30.0%
ACAAATACAAGGAAAGAATG+AGG + chr2_3:52922811-52922830 Msa0298710:intron 30.0%
! TAGGTGTTTTCACAAATACA+AGG + chr2_3:52922822-52922841 Msa0298710:intron 30.0%
ACACTCAAAAAAAATGCTCT+AGG + chr2_3:52922841-52922860 Msa0298710:intron 30.0%
AATAAAAATGTAGAAGTGGG+AGG + chr2_3:52922916-52922935 Msa0298710:intron 30.0%
GAAACTATTACGAAGAAAGA+AGG + chr2_3:52923043-52923062 Msa0298710:intron 30.0%
TTCTTCGTAATAGTTTCGTT+TGG - chr2_3:52923046-52923065 Msa0298700:intron 30.0%
! ATAAATGTGTCGATCACATT+AGG - chr2_3:52923137-52923156 Msa0298700:intron 30.0%
! TAAATGTGTCGATCACATTA+GGG - chr2_3:52923138-52923157 Msa0298700:intron 30.0%
ATTTGTCTAAATAGTCCAGT+GGG - chr2_3:52923510-52923529 Msa0298700:intron 30.0%
! ATCAATTAAGTTGTAACTCC+TGG + chr2_3:52923573-52923592 Msa0298710:intron 30.0%
AAAATACGATCTTGAATGGT+CGG + chr2_3:52923716-52923735 Msa0298710:intron 30.0%
CCATGCACTTAATATAAGTT+AGG + chr2_3:52923929-52923948 Msa0298710:CDS 30.0%
CCTAACTTATATTAAGTGCA+TGG - chr2_3:52923926-52923945 Msa0298700:intron 30.0%
TAGTCACCATATAGAAGATC+AGG - chr2_3:52919340-52919359 Msa0298700:three_prime_UTR 35.0%
ATCAGCAAGTATCCTTTAAG+TGG - chr2_3:52919396-52919415 Msa0298700:three_prime_UTR 35.0%
TCAGCAAGTATCCTTTAAGT+GGG - chr2_3:52919397-52919416 Msa0298700:three_prime_UTR 35.0%
CCATATGCCTAACTATTAAG+AGG + chr2_3:52919483-52919502 None:intergenic 35.0%
CCTCTTAATAGTTAGGCATA+TGG - chr2_3:52919480-52919499 Msa0298700:three_prime_UTR 35.0%
TCAACTTAAATCTCAGCATG+TGG - chr2_3:52919962-52919981 Msa0298700:three_prime_UTR 35.0%
TAAAAATCCCACATAGCCTT+TGG + chr2_3:52919992-52920011 None:intergenic 35.0%
! GTTCCTTTTGTGTTCTCTTT+GGG + chr2_3:52920151-52920170 None:intergenic 35.0%
! CACATCCGTTTGAGTTATTA+AGG - chr2_3:52920311-52920330 Msa0298700:intron 35.0%
AGCTTAAAGAGTAATTTCCG+AGG - chr2_3:52920364-52920383 Msa0298700:intron 35.0%
AACTCACACGCATAAATAGA+AGG - chr2_3:52920588-52920607 Msa0298700:intron 35.0%
ACTCACACGCATAAATAGAA+GGG - chr2_3:52920589-52920608 Msa0298700:intron 35.0%
!! CAATATTTTACCGGTTGAGT+TGG - chr2_3:52920651-52920670 Msa0298700:intron 35.0%
AATTAGGATGAGTGCCAATT+TGG - chr2_3:52921044-52921063 Msa0298700:CDS 35.0%
! AGTGCCAATTTGGAATTAGA+AGG - chr2_3:52921054-52921073 Msa0298700:CDS 35.0%
TGGACCTTCTAATTCCAAAT+TGG + chr2_3:52921061-52921080 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG + chr2_3:52921246-52921265 None:intergenic 35.0%
ACATGTCGGACACTAAATAT+AGG + chr2_3:52921513-52921532 None:intergenic 35.0%
TCCTTATGCAACTAAAGCAA+GGG + chr2_3:52921582-52921601 None:intergenic 35.0%
ATCCTTATGCAACTAAAGCA+AGG + chr2_3:52921583-52921602 None:intergenic 35.0%
TGCTTTAGTTGCATAAGGAT+TGG - chr2_3:52921583-52921602 Msa0298700:intron 35.0%
! CTTCAAAATTTTCACATGGC+AGG + chr2_3:52921628-52921647 None:intergenic 35.0%
CATAAATTGGCATACTCAGA+AGG - chr2_3:52921677-52921696 Msa0298700:intron 35.0%
GATGTTTACTTTGACAACGT+TGG - chr2_3:52921786-52921805 Msa0298700:intron 35.0%
TGAGATATCATTCCACAAAG+AGG + chr2_3:52921864-52921883 None:intergenic 35.0%
ATTCCTAACACCTTCTCTTT+CGG + chr2_3:52922030-52922049 None:intergenic 35.0%
TAGGAATCTTCTGAATATGG+TGG - chr2_3:52922043-52922062 Msa0298700:intron 35.0%
AGGAATCTTCTGAATATGGT+GGG - chr2_3:52922044-52922063 Msa0298700:intron 35.0%
! GAATCATATTGGCATCGTTT+TGG - chr2_3:52922098-52922117 Msa0298700:intron 35.0%
ATGGAAAGATACTTGCAAGA+AGG - chr2_3:52922137-52922156 Msa0298700:intron 35.0%
AATGTTAGAGCTGGAGAATA+AGG + chr2_3:52922225-52922244 Msa0298710:intron 35.0%
! TTATTCTCCAGCTCTAACAT+TGG - chr2_3:52922224-52922243 Msa0298700:intron 35.0%
! AACTTTTCCAATGTTAGAGC+TGG + chr2_3:52922234-52922253 Msa0298710:intron 35.0%
CACTCTGCGCAAATAATATA+TGG + chr2_3:52922308-52922327 Msa0298710:intron 35.0%
AAATAGTTGGGAGAGATAAC+TGG + chr2_3:52922470-52922489 Msa0298710:intron 35.0%
TCTACCTGTGGAAAATAGTT+GGG + chr2_3:52922482-52922501 Msa0298710:intron 35.0%
GATCAATGTTACAGATTGTG+AGG + chr2_3:52922565-52922584 Msa0298710:intron 35.0%
CAATATAGTAGGTTCGGATT+TGG + chr2_3:52922966-52922985 Msa0298710:intron 35.0%
GAAAAGTGGCACAATATAGT+AGG + chr2_3:52922977-52922996 Msa0298710:intron 35.0%
! AAATGTGTCGATCACATTAG+GGG - chr2_3:52923139-52923158 Msa0298700:intron 35.0%
GATTTGTCTAAATAGTCCAG+TGG - chr2_3:52923509-52923528 Msa0298700:intron 35.0%
! AATTAAGTTGTAACTCCTGG+TGG + chr2_3:52923570-52923589 Msa0298710:intron 35.0%
! GACCATTCAAGATCGTATTT+TGG - chr2_3:52923715-52923734 Msa0298700:intron 35.0%
GTCCAAAATACGATCTTGAA+TGG + chr2_3:52923720-52923739 Msa0298710:intron 35.0%
CGGGAAGTTGAAAAGATTAA+AGG - chr2_3:52923815-52923834 Msa0298700:intron 35.0%
!!! ATCCAAGTGTTTTTGGAACT+TGG + chr2_3:52923870-52923889 Msa0298710:CDS 35.0%
! TTGTCGAATCCAAGTGTTTT+TGG + chr2_3:52923877-52923896 Msa0298710:CDS 35.0%
AAAACACTTGGATTCGACAA+CGG - chr2_3:52923877-52923896 Msa0298700:intron 35.0%
AAACCATCTCATATATCCCA+AGG + chr2_3:52924011-52924030 Msa0298710:intron 35.0%
CAGCAAGTATCCTTTAAGTG+GGG - chr2_3:52919398-52919417 Msa0298700:three_prime_UTR 40.0%
ACTAACATCTCCCCACTTAA+AGG + chr2_3:52919411-52919430 None:intergenic 40.0%
! GGTATGAAGCACCAATTCTA+AGG + chr2_3:52919770-52919789 None:intergenic 40.0%
GATCCCAAAGAGAACACAAA+AGG - chr2_3:52920145-52920164 Msa0298700:intron 40.0%
! GGTTCCTTTTGTGTTCTCTT+TGG + chr2_3:52920152-52920171 None:intergenic 40.0%
GAACGACAGTTAATTGTCGT+TGG + chr2_3:52920255-52920274 None:intergenic 40.0%
GTTAGTTCACAAGCGAACAA+CGG - chr2_3:52920286-52920305 Msa0298700:intron 40.0%
CTCTAAATTCTTTGGCAGAC+TGG + chr2_3:52920420-52920439 None:intergenic 40.0%
GGGACATATGGACATATAGT+TGG - chr2_3:52920672-52920691 Msa0298700:intron 40.0%
ATTAGAAGGTCCAGTGACAT+AGG - chr2_3:52921068-52921087 Msa0298700:CDS 40.0%
! GCAACTAAAGCAAGGGTTTT+AGG + chr2_3:52921575-52921594 None:intergenic 40.0%
ACCCTTGCTTTAGTTGCATA+AGG - chr2_3:52921578-52921597 Msa0298700:intron 40.0%
! ATGGCAGGTTGCTTTATACA+TGG + chr2_3:52921613-52921632 None:intergenic 40.0%
GTTTACTTTGACAACGTTGG+TGG - chr2_3:52921789-52921808 Msa0298700:intron 40.0%
! TTCTAGCATGCTTGTTGACA+TGG + chr2_3:52921839-52921858 None:intergenic 40.0%
CATGCTAGAATACCTCTTTG+TGG - chr2_3:52921849-52921868 Msa0298700:intron 40.0%
AAGATACTTGCAAGAAGGCA+AGG - chr2_3:52922142-52922161 Msa0298700:intron 40.0%
TATCGGAATTGAAGGCTTTC+TGG - chr2_3:52922187-52922206 Msa0298700:intron 40.0%
CTCTACCTGTGGAAAATAGT+TGG + chr2_3:52922483-52922502 Msa0298710:intron 40.0%
! TTTTCTTCAAAGCCAAGTGC+AGG - chr2_3:52922626-52922645 Msa0298700:intron 40.0%
CAAGATGGACCAACTTACAT+GGG + chr2_3:52922665-52922684 Msa0298710:intron 40.0%
TCAAGATGGACCAACTTACA+TGG + chr2_3:52922666-52922685 Msa0298710:intron 40.0%
TGGTTGTTCTACAGTCAAGA+TGG + chr2_3:52922680-52922699 Msa0298710:intron 40.0%
ATAGTAGGTTCGGATTTGGA+GGG + chr2_3:52922962-52922981 Msa0298710:intron 40.0%
TATAGTAGGTTCGGATTTGG+AGG + chr2_3:52922963-52922982 Msa0298710:intron 40.0%
GTGGCACAATATAGTAGGTT+CGG + chr2_3:52922972-52922991 Msa0298710:intron 40.0%
TTGTTCATGAGTGTGTCACA+TGG + chr2_3:52923379-52923398 Msa0298710:intron 40.0%
TGTGACACACTCATGAACAA+AGG - chr2_3:52923379-52923398 Msa0298700:intron 40.0%
GTGACACACTCATGAACAAA+GGG - chr2_3:52923380-52923399 Msa0298700:intron 40.0%
!! AAGGGAAGAGGCATCATAAA+CGG - chr2_3:52923398-52923417 Msa0298700:intron 40.0%
! CATCATAAACGGGTTTGGAA+AGG - chr2_3:52923409-52923428 Msa0298700:intron 40.0%
TAAATAGTCCAGTGGGAATG+TGG - chr2_3:52923517-52923536 Msa0298700:intron 40.0%
AATTTGAACCACATTCCCAC+TGG + chr2_3:52923528-52923547 Msa0298710:intron 40.0%
GGGAATGTGGTTCAAATTTG+TGG - chr2_3:52923530-52923549 Msa0298700:intron 40.0%
!! TGTTGTCAGCACTTTTTGAG+AGG - chr2_3:52923600-52923619 Msa0298700:intron 40.0%
ATGTTATCCCACCAACCAAT+CGG + chr2_3:52923657-52923676 Msa0298710:intron 40.0%
AATCAGCTCTACCATTAGTG+TGG + chr2_3:52923771-52923790 Msa0298710:intron 40.0%
ACACTAATGGTAGAGCTGAT+TGG - chr2_3:52923770-52923789 Msa0298700:intron 40.0%
!!! GTTTTTGGAACTTGGACTTC+AGG + chr2_3:52923862-52923881 Msa0298710:CDS 40.0%
GTCCAAGTTCCAAAAACACT+TGG - chr2_3:52923865-52923884 Msa0298700:intron 40.0%
ATGGAGAAAGGCTCATGGAA+CGG + chr2_3:52919284-52919303 None:intergenic 45.0%
AGTATCAGCAGCTGGATACT+TGG + chr2_3:52919374-52919393 None:intergenic 45.0%
! GCTGATAAAGTATCAGCAGC+TGG + chr2_3:52919382-52919401 None:intergenic 45.0%
AAATGAGTCGGGTTCCACTT+GGG - chr2_3:52919576-52919595 Msa0298700:three_prime_UTR 45.0%
TGGCAAACCAAAGGCTATGT+GGG - chr2_3:52919982-52920001 Msa0298700:three_prime_UTR 45.0%
TAGAAGGGCAGAAGTTCGAA+CGG - chr2_3:52920604-52920623 Msa0298700:intron 45.0%
GTTCGAACGGTCACAATATC+CGG - chr2_3:52920617-52920636 Msa0298700:intron 45.0%
TCCATATGTCCCAACTCAAC+CGG + chr2_3:52920664-52920683 None:intergenic 45.0%
! GATGGTGGTGAAATGCACAT+AGG - chr2_3:52920791-52920810 Msa0298700:three_prime_UTR 45.0%
GGACTTCAATCCTATGTCAC+TGG + chr2_3:52921081-52921100 None:intergenic 45.0%
ATTGAAGTCCTCCAAGTTCG+AGG - chr2_3:52921091-52921110 Msa0298700:CDS 45.0%
AACTCAGGTATCCATGGAGT+TGG + chr2_3:52921123-52921142 None:intergenic 45.0%
AACCTGAACTCAGGTATCCA+TGG + chr2_3:52921129-52921148 None:intergenic 45.0%
! TGGATACCTGAGTTCAGGTT+AGG - chr2_3:52921129-52921148 Msa0298700:CDS 45.0%
! ATACCTGAGTTCAGGTTAGG+TGG - chr2_3:52921132-52921151 Msa0298700:CDS 45.0%
TATCCACCTAACCTGAACTC+AGG + chr2_3:52921138-52921157 None:intergenic 45.0%
GTGTCCGACATGTCTCAAAT+AGG - chr2_3:52921520-52921539 Msa0298700:intron 45.0%
! GCAGGTTGCTTTATACATGG+CGG + chr2_3:52921610-52921629 None:intergenic 45.0%
TAGGTTTGGACCGAAAGAGA+AGG - chr2_3:52922017-52922036 Msa0298700:intron 45.0%
! TCTGAATATGGTGGGAAAGC+AGG - chr2_3:52922052-52922071 Msa0298700:intron 45.0%
! CTCTCCCAACTATTTTCCAC+AGG - chr2_3:52922475-52922494 Msa0298700:intron 45.0%
GAGGGATTTGAACGGTGAAT+AGG + chr2_3:52922888-52922907 Msa0298710:intron 45.0%
AGGAAGAGGAGGGATTTGAA+CGG + chr2_3:52922896-52922915 Msa0298710:intron 45.0%
AATGTAGAAGTGGGAGGAAG+AGG + chr2_3:52922910-52922929 Msa0298710:intron 45.0%
TAGTAGGTTCGGATTTGGAG+GGG + chr2_3:52922961-52922980 Msa0298710:intron 45.0%
CCTAGCAAAGGCAATGACTA+AGG + chr2_3:52923172-52923191 Msa0298710:intron 45.0%
CCTTAGTCATTGCCTTTGCT+AGG - chr2_3:52923169-52923188 Msa0298700:intron 45.0%
!! TACGACTCTAGAACCTACAG+TGG + chr2_3:52923311-52923330 Msa0298710:intron 45.0%
!! TAGGTTCTAGAGTCGTATCC+TGG - chr2_3:52923314-52923333 Msa0298700:intron 45.0%
GTTTGTCTTGTCACTGTGCA+TGG - chr2_3:52923352-52923371 Msa0298700:intron 45.0%
CACTCATGAACAAAGGGAAG+AGG - chr2_3:52923386-52923405 Msa0298700:intron 45.0%
!! AGGGAAGAGGCATCATAAAC+GGG - chr2_3:52923399-52923418 Msa0298700:intron 45.0%
!! AGAGGCATCATAAACGGGTT+TGG - chr2_3:52923404-52923423 Msa0298700:intron 45.0%
!! TGTCAGCACTTTTTGAGAGG+TGG - chr2_3:52923603-52923622 Msa0298700:intron 45.0%
TGTTATCCCACCAACCAATC+GGG + chr2_3:52923656-52923675 Msa0298710:intron 45.0%
! TTTGGAACTTGGACTTCAGG+AGG + chr2_3:52923859-52923878 Msa0298710:intron 45.0%
GTGCATGGAACACATGTTGT+TGG - chr2_3:52923941-52923960 Msa0298700:intron 45.0%
! GGAACACATGTTGTTGGTAG+AGG - chr2_3:52923947-52923966 Msa0298700:intron 45.0%
! ACATGTTGTTGGTAGAGGAC+TGG - chr2_3:52923952-52923971 Msa0298700:intron 45.0%
! CATGTTGTTGGTAGAGGACT+GGG - chr2_3:52923953-52923972 Msa0298700:intron 45.0%
! ATGTTGTTGGTAGAGGACTG+GGG - chr2_3:52923954-52923973 Msa0298700:intron 45.0%
TCTCTCAACCATGCAGAAGA+TGG + chr2_3:52923985-52924004 Msa0298710:intron 45.0%
CTGCCTTGGGATATATGAGA+TGG - chr2_3:52924005-52924024 Msa0298700:intron 45.0%
!!! TAAGTAAATTTTTTTTTATA+GGG + chr2_3:52921290-52921309 None:intergenic 5.0%
!!! ATAAGTAAATTTTTTTTTAT+AGG + chr2_3:52921291-52921310 None:intergenic 5.0%
GCTTCATGGAGAAAGGCTCA+TGG + chr2_3:52919289-52919308 None:intergenic 50.0%
GAGCCTTTCTCCATGAAGCT+CGG - chr2_3:52919290-52919309 Msa0298700:three_prime_UTR 50.0%
TCCATGAAGCTCGGTCGAAT+TGG - chr2_3:52919299-52919318 Msa0298700:three_prime_UTR 50.0%
CCATGAAGCTCGGTCGAATT+GGG - chr2_3:52919300-52919319 Msa0298700:three_prime_UTR 50.0%
CATGAAGCTCGGTCGAATTG+GGG - chr2_3:52919301-52919320 Msa0298700:three_prime_UTR 50.0%
CAAATGAGTCGGGTTCCACT+TGG - chr2_3:52919575-52919594 Msa0298700:three_prime_UTR 50.0%
CTCAGCATGTGGCAAACCAA+AGG - chr2_3:52919973-52919992 Msa0298700:three_prime_UTR 50.0%
GTGGCAAACCAAAGGCTATG+TGG - chr2_3:52919981-52920000 Msa0298700:three_prime_UTR 50.0%
!! ACCGGTTGAGTTGGGACATA+TGG - chr2_3:52920660-52920679 Msa0298700:intron 50.0%
GTTGGAACTGTCCTCGAACT+TGG + chr2_3:52921105-52921124 None:intergenic 50.0%
CTCCATGGATACCTGAGTTC+AGG - chr2_3:52921124-52921143 Msa0298700:CDS 50.0%
!! GGACCGAAAGAGAAGGTGTT+AGG - chr2_3:52922024-52922043 Msa0298700:intron 50.0%
! ATATGGTGGGAAAGCAGGTG+AGG - chr2_3:52922057-52922076 Msa0298700:intron 50.0%
CTTACATGGGTGTGTGGCAA+TGG + chr2_3:52922652-52922671 Msa0298710:intron 50.0%
TGCCACACACCCATGTAAGT+TGG - chr2_3:52922653-52922672 Msa0298700:intron 50.0%
GACCAACTTACATGGGTGTG+TGG + chr2_3:52922658-52922677 Msa0298710:intron 50.0%
TAGAAGTGGGAGGAAGAGGA+GGG + chr2_3:52922906-52922925 Msa0298710:intron 50.0%
AGTCATTGCCTTTGCTAGGC+AGG - chr2_3:52923173-52923192 Msa0298700:intron 50.0%
! TCATGTTGAGACTCGGGTTG+TGG + chr2_3:52923243-52923262 Msa0298710:intron 50.0%
! TCTGGCTCATGTTGAGACTC+GGG + chr2_3:52923249-52923268 Msa0298710:intron 50.0%
! CTCTGGCTCATGTTGAGACT+CGG + chr2_3:52923250-52923269 Msa0298710:intron 50.0%
TCAACATGAGCCAGAGCATG+AGG - chr2_3:52923254-52923273 Msa0298700:intron 50.0%
!! GTTCTAGAGTCGTATCCTGG+AGG - chr2_3:52923317-52923336 Msa0298700:intron 50.0%
AACATATCAGACGAGCCTCC+AGG + chr2_3:52923335-52923354 Msa0298710:intron 50.0%
AACAGCTTCCATCTCCCGAT+TGG - chr2_3:52923639-52923658 Msa0298700:intron 50.0%
ACCACCTTGACCAAACCTGA+TGG - chr2_3:52923743-52923762 Msa0298700:intron 50.0%
CCACCTTGACCAAACCTGAT+GGG - chr2_3:52923744-52923763 Msa0298700:intron 50.0%
CACCTTGACCAAACCTGATG+GGG - chr2_3:52923745-52923764 Msa0298700:intron 50.0%
AGAGCTGATTGGATCCAACC+CGG - chr2_3:52923781-52923800 Msa0298700:intron 50.0%
! TGTTGTTGGTAGAGGACTGG+GGG - chr2_3:52923955-52923974 Msa0298700:intron 50.0%
CATGGTTGAGAGACTGCCTT+GGG - chr2_3:52923992-52924011 Msa0298700:intron 50.0%
CGACCGAGCTTCATGGAGAA+AGG + chr2_3:52919296-52919315 None:intergenic 55.0%
CCCAATTCGACCGAGCTTCA+TGG + chr2_3:52919303-52919322 None:intergenic 55.0%
GGAACTGTCCTCGAACTTGG+AGG + chr2_3:52921102-52921121 None:intergenic 55.0%
CGAGGACAGTTCCAACTCCA+TGG - chr2_3:52921109-52921128 Msa0298700:CDS 55.0%
GGAAAGCAGGTGAGGATGGA+GGG - chr2_3:52922065-52922084 Msa0298700:intron 55.0%
GTAGAAGTGGGAGGAAGAGG+AGG + chr2_3:52922907-52922926 Msa0298710:intron 55.0%
CTCATGCTCCTGCCTAGCAA+AGG + chr2_3:52923184-52923203 Msa0298710:intron 55.0%
! GACTCGGGTTGTGGCTCTAT+GGG + chr2_3:52923234-52923253 Msa0298710:intron 55.0%
! AGACTCGGGTTGTGGCTCTA+TGG + chr2_3:52923235-52923254 Msa0298710:intron 55.0%
TGCTGAGGCGGATGAACAGA+GGG - chr2_3:52923277-52923296 Msa0298700:intron 55.0%
! AGTTGTAACTCCTGGTGGCG+AGG + chr2_3:52923565-52923584 Msa0298710:intron 55.0%
GCTTCCATCTCCCGATTGGT+TGG - chr2_3:52923643-52923662 Msa0298700:intron 55.0%
! TCCATCTCCCGATTGGTTGG+TGG - chr2_3:52923646-52923665 Msa0298700:intron 55.0%
! CCATCTCCCGATTGGTTGGT+GGG - chr2_3:52923647-52923666 Msa0298700:intron 55.0%
! CCCATCAGGTTTGGTCAAGG+TGG + chr2_3:52923747-52923766 Msa0298710:intron 55.0%
TAGTGTGGCCCCATCAGGTT+TGG + chr2_3:52923756-52923775 Msa0298710:intron 55.0%
ACCTGATGGGGCCACACTAA+TGG - chr2_3:52923757-52923776 Msa0298700:intron 55.0%
ACCATTAGTGTGGCCCCATC+AGG + chr2_3:52923761-52923780 Msa0298710:intron 55.0%
ACTTCCCGATCAGCTTCCTC+CGG + chr2_3:52923803-52923822 Msa0298710:intron 55.0%
! GTTGTTGGTAGAGGACTGGG+GGG - chr2_3:52923956-52923975 Msa0298700:intron 55.0%
GCATGGTTGAGAGACTGCCT+TGG - chr2_3:52923991-52924010 Msa0298700:intron 55.0%
GGTGGGAAAGCAGGTGAGGA+TGG - chr2_3:52922061-52922080 Msa0298700:intron 60.0%
GGGAAAGCAGGTGAGGATGG+AGG - chr2_3:52922064-52922083 Msa0298700:intron 60.0%
GTGTGGCAATGGCCTGCACT+TGG + chr2_3:52922641-52922660 Msa0298710:intron 60.0%
! GGCAGGAGCATGAGCTGAGA+CGG - chr2_3:52923190-52923209 Msa0298700:intron 60.0%
AGCTGAGACGGAGAGCTGAG+AGG - chr2_3:52923202-52923221 Msa0298700:intron 60.0%
GCTGAGACGGAGAGCTGAGA+GGG - chr2_3:52923203-52923222 Msa0298700:intron 60.0%
CTGAGACGGAGAGCTGAGAG+GGG - chr2_3:52923204-52923223 Msa0298700:intron 60.0%
TGAGACGGAGAGCTGAGAGG+GGG - chr2_3:52923205-52923224 Msa0298700:intron 60.0%
!! AGCCAGAGCATGAGGTGCTG+AGG - chr2_3:52923262-52923281 Msa0298700:intron 60.0%
!! CAGAGCATGAGGTGCTGAGG+CGG - chr2_3:52923265-52923284 Msa0298700:intron 60.0%
GTGCTGAGGCGGATGAACAG+AGG - chr2_3:52923276-52923295 Msa0298700:intron 60.0%
GGCGGATGAACAGAGGGAAG+AGG - chr2_3:52923283-52923302 Msa0298700:intron 60.0%
!! GAGGGAAGAGGCACCACTGT+AGG - chr2_3:52923295-52923314 Msa0298700:intron 60.0%
CCCACCAACCAATCGGGAGA+TGG + chr2_3:52923650-52923669 Msa0298710:intron 60.0%
! GGCCCCATCAGGTTTGGTCA+AGG + chr2_3:52923750-52923769 Msa0298710:intron 60.0%
GCTGATTGGATCCAACCCGG+AGG - chr2_3:52923784-52923803 Msa0298700:intron 60.0%
CCAACCCGGAGGAAGCTGAT+CGG - chr2_3:52923795-52923814 Msa0298700:intron 60.0%
CAACCCGGAGGAAGCTGATC+GGG - chr2_3:52923796-52923815 Msa0298700:intron 60.0%
CTTCCCGATCAGCTTCCTCC+GGG + chr2_3:52923802-52923821 Msa0298710:intron 60.0%
GGGGGCAACCATCTTCTGCA+TGG - chr2_3:52923974-52923993 Msa0298700:intron 60.0%
GAGACGGAGAGCTGAGAGGG+GGG - chr2_3:52923206-52923225 Msa0298700:intron 65.0%
CGCCTCAGCACCTCATGCTC+TGG + chr2_3:52923267-52923286 Msa0298710:intron 65.0%
GACTGACAGACCTCGCCACC+AGG - chr2_3:52923552-52923571 Msa0298700:intron 65.0%
CCGATCAGCTTCCTCCGGGT+TGG + chr2_3:52923798-52923817 Msa0298710:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 52919219 52924049 52919219 ID=Msa0298700;Name=Msa0298700
chr2_3 mRNA 52919219 52924049 52919219 ID=Msa0298700-mRNA-1;Parent=Msa0298700;Name=Msa0298700-mRNA-1;_AED=0.33;_eAED=0.34;_QI=0|0.5|0.4|0.8|0.25|0.2|5|1081|131
chr2_3 exon 52919219 52920077 52919219 ID=Msa0298700-mRNA-1:exon:16962;Parent=Msa0298700-mRNA-1
chr2_3 exon 52920772 52921248 52920772 ID=Msa0298700-mRNA-1:exon:16961;Parent=Msa0298700-mRNA-1
chr2_3 exon 52921375 52921501 52921375 ID=Msa0298700-mRNA-1:exon:16960;Parent=Msa0298700-mRNA-1
chr2_3 exon 52921537 52921544 52921537 ID=Msa0298700-mRNA-1:exon:16959;Parent=Msa0298700-mRNA-1
chr2_3 exon 52924044 52924049 52924044 ID=Msa0298700-mRNA-1:exon:16958;Parent=Msa0298700-mRNA-1
chr2_3 CDS 52924044 52924049 52924044 ID=Msa0298700-mRNA-1:cds;Parent=Msa0298700-mRNA-1
chr2_3 CDS 52921537 52921544 52921537 ID=Msa0298700-mRNA-1:cds;Parent=Msa0298700-mRNA-1
chr2_3 CDS 52921375 52921501 52921375 ID=Msa0298700-mRNA-1:cds;Parent=Msa0298700-mRNA-1
chr2_3 CDS 52920994 52921248 52920994 ID=Msa0298700-mRNA-1:cds;Parent=Msa0298700-mRNA-1
chr2_3 three_prime_UTR 52920772 52920993 52920772 ID=Msa0298700-mRNA-1:three_prime_utr;Parent=Msa0298700-mRNA-1
chr2_3 three_prime_UTR 52919219 52920077 52919219 ID=Msa0298700-mRNA-1:three_prime_utr;Parent=Msa0298700-mRNA-1
Gene Sequence

>Msa0298700

ATGAATAAAATCAAGTATTTTCCTGATGGTATTGATGTTTACTTTGACAACGTTGGTGGTGAAATGCTTGAAGCTGTACTTAACCATGTCAACAAGCATGCTAGAATACCTCTTTGTGGAATGATATCTCAATATAACAAGGTTTGGACCGAAAGAGAAGGTGTTAGGAATCTTCTGAATATGGTGGGAAAGCAGGTGAGGATGGAGGGTTTTATGCTAGAATCATATTGGCATCGTTTTGGAGATTTTGCTAAAGATATGGAAAGATACTTGCAAGAAGGCAAGGTTAAGTCAAAGAATAAAATAAATATCGGAATTGAAGGCTTTCTGGAGAGTTTGAACTCCTTATTCTCCAGCTCTAACATTGGAAAAGTTGTTGTTCAAGTTAAGGCATAG

Protein sequence

>Msa0298700

MNKIKYFPDGIDVYFDNVGGEMLEAVLNHVNKHARIPLCGMISQYNKVWTEREGVRNLLNMVGKQVRMEGFMLESYWHRFGDFAKDMERYLQEGKVKSKNKINIGIEGFLESLNSLFSSSNIGKVVVQVKA*