AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0337650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0337650 MtrunA17_Chr2g0324821 98.571 140 2 0 1 140 1 140 1.31e-100 284
Msa0337650 MtrunA17_Chr2g0282661 67.361 144 39 2 2 140 12 152 1.33e-65 196
Msa0337650 MtrunA17_Chr5g0413571 66.176 136 42 2 3 138 4 135 8.29e-59 178
Msa0337650 MtrunA17_Chr8g0365411 54.545 132 23 1 8 139 9 103 4.55e-44 140
Msa0337650 MtrunA17_Chr6g0476691 68.675 83 26 0 57 139 17 99 6.11e-38 124
Msa0337650 MtrunA17_Chr5g0438061 41.085 129 63 3 10 137 103 219 3.79e-22 87.8
Msa0337650 MtrunA17_Chr5g0438041 43.609 133 58 6 10 137 5 125 1.34e-21 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0337650 AT2G33845.1 72.464 138 35 1 3 140 48 182 1.18e-69 207
Msa0337650 AT4G28440.1 69.630 135 39 1 5 137 15 149 1.96e-63 191
Msa0337650 AT1G23750.1 60.870 138 50 1 2 139 4 137 6.13e-60 181
Msa0337650 AT1G03810.1 68.217 129 40 1 7 135 14 141 1.65e-59 181
Msa0337650 AT1G10590.2 65.926 135 41 3 5 137 6 137 9.03e-58 176
Msa0337650 AT1G10590.1 65.926 135 41 3 5 137 6 137 9.03e-58 176
Msa0337650 AT1G10590.3 65.926 135 41 3 5 137 20 151 1.88e-57 176
Msa0337650 AT1G23750.2 69.474 95 29 0 45 139 6 100 5.67e-47 147

Find 46 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTGTACACGCAATAAAT+TGG 0.237468 2_4:+57695727 None:intergenic
TCCCTAACTTCAAAATTTGC+AGG 0.291394 2_4:+57696021 None:intergenic
AACACGAAGCTTTGAATCTA+TGG 0.308708 2_4:-57699009 Msa0337650:exon
AAAATATTTAACAATATTTA+CGG 0.310420 2_4:+57695750 None:intergenic
AGAGTGTGTCCATTGGTTCC+AGG 0.350948 2_4:+57698933 None:intergenic
CTCATTAGTTGAATATGAAT+TGG 0.360041 2_4:-57695986 Msa0337650:CDS
CTGCTGTGCAGGTTCATATA+TGG 0.396491 2_4:-57695873 Msa0337650:three_prime_UTR
CGCAGAATTAAAGTTGCACC+AGG 0.436054 2_4:+57696120 None:intergenic
CTATGAGGTTGGCAGTTGAT+AGG 0.440060 2_4:-57696068 Msa0337650:CDS
TCCTAACCGCGGTGGTCGAT+CGG 0.440345 2_4:-57698871 Msa0337650:CDS
CACTGTCAGAGTGTGTCCAT+TGG 0.463476 2_4:+57698926 None:intergenic
CGCATTGCTGAATGTCTCAT+TGG 0.467345 2_4:-57698825 Msa0337650:CDS
TGAGGTTGGCAGTTGATAGG+TGG 0.471269 2_4:-57696065 Msa0337650:CDS
TAATTCTTCGCCGGTGAAGA+CGG 0.477098 2_4:-57698895 Msa0337650:CDS
CAATTTATTGCGTGTACAGT+TGG 0.492134 2_4:-57695726 Msa0337650:three_prime_UTR
TGAACAATTGACTGCTGTGC+AGG 0.501881 2_4:-57695884 Msa0337650:three_prime_UTR
TGCTAAGATTGACATGTTCA+AGG 0.505137 2_4:-57696094 Msa0337650:CDS
GAGGTTGGCAGTTGATAGGT+GGG 0.510112 2_4:-57696064 Msa0337650:CDS
AAGGTCGATCAGCTGAAACC+TGG 0.513519 2_4:-57698951 Msa0337650:CDS
GCCGATCGACCACCGCGGTT+AGG 0.518836 2_4:+57698870 None:intergenic
CACAGCAGTCAATTGTTCAA+TGG 0.525303 2_4:+57695888 None:intergenic
CAGCTGAAACCTGGAACCAA+TGG 0.532250 2_4:-57698942 Msa0337650:CDS
AATGAGACATTCAGCAATGC+GGG 0.536511 2_4:+57698827 None:intergenic
TGATCGACCTTCACGAACAC+TGG 0.539292 2_4:+57698963 None:intergenic
CGGTTAGGAACCGTCTTCAC+CGG 0.552526 2_4:+57698885 None:intergenic
GAAGGTGGTTAATTCTTCGC+CGG 0.566549 2_4:-57698904 Msa0337650:CDS
ACATGTTCAAGGGATCTATG+AGG 0.578715 2_4:-57696083 Msa0337650:CDS
GCTAAGATTGACATGTTCAA+GGG 0.579635 2_4:-57696093 Msa0337650:CDS
GTTCAAGGGATCTATGAGGT+TGG 0.593452 2_4:-57696079 Msa0337650:CDS
ATTTAGTCTTCAGATTGCTG+TGG 0.594758 2_4:-57695837 Msa0337650:three_prime_UTR
TTCACTGCTCGCAATGAACA+AGG 0.601184 2_4:-57698780 Msa0337650:intron
GGTTGGCAGTTGATAGGTGG+GGG 0.611083 2_4:-57696062 Msa0337650:CDS
AAGTTGCACCAGGGTTCATG+AGG 0.612434 2_4:+57696130 None:intergenic
TAACCGCGGTGGTCGATCGG+CGG 0.613647 2_4:-57698868 Msa0337650:CDS
AGGTTGGCAGTTGATAGGTG+GGG 0.635745 2_4:-57696063 Msa0337650:CDS
GCGAAAACCAGTGTTCGTGA+AGG 0.642463 2_4:-57698970 Msa0337650:CDS
AGACATTCAGCAATGCGGGA+AGG 0.647720 2_4:+57698831 None:intergenic
ACACACTCTGACAGTGAAGG+TGG 0.655149 2_4:-57698919 Msa0337650:CDS
TGGACACACTCTGACAGTGA+AGG 0.666395 2_4:-57698922 Msa0337650:CDS
CAATGAGACATTCAGCAATG+CGG 0.676023 2_4:+57698826 None:intergenic
GATCAATTGAAAATTGAACA+AGG 0.679889 2_4:+57699042 None:intergenic
GCAGTGGACCTCATGAACCC+TGG 0.684427 2_4:-57696138 Msa0337650:intron
AAGACGGTTCCTAACCGCGG+TGG 0.697992 2_4:-57698879 Msa0337650:CDS
GTGAAGACGGTTCCTAACCG+CGG 0.698190 2_4:-57698882 Msa0337650:CDS
GCAGAATTAAAGTTGCACCA+GGG 0.713466 2_4:+57696121 None:intergenic
TCACCGCCGATCGACCACCG+CGG 0.798992 2_4:+57698865 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAATCGTTGATTTTATA+TGG - chr2_4:57696140-57696159 Msa0337650:intron 15.0%
!!! ATGTGGTTTTTTATTTAATA+GGG + chr2_4:57696575-57696594 None:intergenic 15.0%
!!! AATGTGGTTTTTTATTTAAT+AGG + chr2_4:57696576-57696595 None:intergenic 15.0%
!!! AATGTGGTTTTTTTTTTTAA+GGG - chr2_4:57696822-57696841 Msa0337650:intron 15.0%
!!! ATGTGGTTTTTTATTTAATA+GGG + chr2_4:57696575-57696594 None:intergenic 15.0%
!!! AATGTGGTTTTTTATTTAAT+AGG + chr2_4:57696576-57696595 None:intergenic 15.0%
!!! AATGTGGTTTTTTTTTTTAA+GGG - chr2_4:57696822-57696841 Msa0337650:intron 15.0%
!!! GTTGATTTTATATGGTTTTA+TGG - chr2_4:57696148-57696167 Msa0337650:intron 20.0%
!!! TTTATGGATATTTTTTGTTG+TGG - chr2_4:57696164-57696183 Msa0337650:intron 20.0%
!!! TGTGGTTTTTTATTTAATAG+GGG + chr2_4:57696574-57696593 None:intergenic 20.0%
!!! GAATGTGGTTTTTTTTTTTA+AGG - chr2_4:57696821-57696840 Msa0337650:intron 20.0%
!!! CTTTTCTCATAAAATAAATG+GGG + chr2_4:57696897-57696916 None:intergenic 20.0%
!!! GCTTTTCTCATAAAATAAAT+GGG + chr2_4:57696898-57696917 None:intergenic 20.0%
!!! AGCTTTTCTCATAAAATAAA+TGG + chr2_4:57696899-57696918 None:intergenic 20.0%
!!! TGTGGTTTTTTATTTAATAG+GGG + chr2_4:57696574-57696593 None:intergenic 20.0%
!!! GAATGTGGTTTTTTTTTTTA+AGG - chr2_4:57696821-57696840 Msa0337650:intron 20.0%
!! AGAGAATAATTGCTAAATTT+AGG + chr2_4:57697511-57697530 None:intergenic 20.0%
!!! AACATTTCCCTTTTTTTAAT+AGG - chr2_4:57697632-57697651 Msa0337650:intron 20.0%
!!! ACATTTCCCTTTTTTTAATA+GGG - chr2_4:57697633-57697652 Msa0337650:intron 20.0%
!! ATTACATAAAAAGCTTATTC+GGG + chr2_4:57697748-57697767 None:intergenic 20.0%
!! CATTACATAAAAAGCTTATT+CGG + chr2_4:57697749-57697768 None:intergenic 20.0%
!!! GAATAAGCTTTTTATGTAAT+GGG - chr2_4:57697748-57697767 Msa0337650:intron 20.0%
! GATCAATTGAAAATTGAACA+AGG + chr2_4:57695708-57695727 None:intergenic 25.0%
!! TGTTTCATTTCTAAGCATTT+TGG - chr2_4:57696006-57696025 Msa0337650:CDS 25.0%
!!! GAAAGAGTACTTAATTCTTA+AGG - chr2_4:57696033-57696052 Msa0337650:CDS 25.0%
!!! CTCATTGATTGTGTTAATTT+TGG - chr2_4:57696099-57696118 Msa0337650:CDS 25.0%
! GAACTTATGAAAATTGCTTA+TGG - chr2_4:57696207-57696226 Msa0337650:intron 25.0%
! ATTGATTATACGAAAACAGT+TGG - chr2_4:57696295-57696314 Msa0337650:intron 25.0%
! AATAAGTTGTTTATCCATAC+AGG - chr2_4:57696463-57696482 Msa0337650:intron 25.0%
! ATAAGTTGTTTATCCATACA+GGG - chr2_4:57696464-57696483 Msa0337650:intron 25.0%
!!! GTGGTTTTTTATTTAATAGG+GGG + chr2_4:57696573-57696592 None:intergenic 25.0%
! AAAATTGAAAGTTGCAAAAG+GGG + chr2_4:57696618-57696637 None:intergenic 25.0%
! CAAAATTGAAAGTTGCAAAA+GGG + chr2_4:57696619-57696638 None:intergenic 25.0%
! TCAAAATTGAAAGTTGCAAA+AGG + chr2_4:57696620-57696639 None:intergenic 25.0%
!!! GTTGTTTTTACTGTTTTGAA+TGG + chr2_4:57696657-57696676 None:intergenic 25.0%
! TTCAAAACAGTAAAAACAAC+TGG - chr2_4:57696657-57696676 Msa0337650:intron 25.0%
! TCAAAACAGTAAAAACAACT+GGG - chr2_4:57696658-57696677 Msa0337650:intron 25.0%
! GATTTATAGGGAAAAGAATA+TGG - chr2_4:57696703-57696722 Msa0337650:intron 25.0%
! AAATAAATGGGGCTAAATTT+AGG + chr2_4:57696886-57696905 None:intergenic 25.0%
! ATTGATTATACGAAAACAGT+TGG - chr2_4:57696295-57696314 Msa0337650:intron 25.0%
! TATGTATTTGTGAGACTATT+TGG - chr2_4:57696985-57697004 Msa0337650:intron 25.0%
! ATGTATTTGTGAGACTATTT+GGG - chr2_4:57696986-57697005 Msa0337650:intron 25.0%
! AATAAGTTGTTTATCCATAC+AGG - chr2_4:57696463-57696482 Msa0337650:intron 25.0%
! ATAAGTTGTTTATCCATACA+GGG - chr2_4:57696464-57696483 Msa0337650:intron 25.0%
!!! GTGGTTTTTTATTTAATAGG+GGG + chr2_4:57696573-57696592 None:intergenic 25.0%
! AAAATTGAAAGTTGCAAAAG+GGG + chr2_4:57696618-57696637 None:intergenic 25.0%
! CAAAATTGAAAGTTGCAAAA+GGG + chr2_4:57696619-57696638 None:intergenic 25.0%
! TCAAAATTGAAAGTTGCAAA+AGG + chr2_4:57696620-57696639 None:intergenic 25.0%
!!! GTTGTTTTTACTGTTTTGAA+TGG + chr2_4:57696657-57696676 None:intergenic 25.0%
! TTCAAAACAGTAAAAACAAC+TGG - chr2_4:57696657-57696676 Msa0337650:intron 25.0%
! TCAAAACAGTAAAAACAACT+GGG - chr2_4:57696658-57696677 Msa0337650:intron 25.0%
! GATTTATAGGGAAAAGAATA+TGG - chr2_4:57696703-57696722 Msa0337650:intron 25.0%
!!! CATTTCCCTTTTTTTAATAG+GGG - chr2_4:57697634-57697653 Msa0337650:intron 25.0%
!!! ATTTCCCTTTTTTTAATAGG+GGG - chr2_4:57697635-57697654 Msa0337650:intron 25.0%
!! CGAATAAGCTTTTTATGTAA+TGG - chr2_4:57697747-57697766 Msa0337650:intron 25.0%
! AACAAATACTGTAACACAAT+AGG + chr2_4:57697910-57697929 None:intergenic 25.0%
! AAAAACATAACACATGAGAA+TGG + chr2_4:57698276-57698295 None:intergenic 25.0%
!! TATTTTGCCTTTTCAAACTT+TGG - chr2_4:57698341-57698360 Msa0337650:intron 25.0%
!! ATTTTGCCTTTTCAAACTTT+GGG - chr2_4:57698342-57698361 Msa0337650:intron 25.0%
!!! ATTCATTTACTTTTATGCAG+TGG - chr2_4:57698593-57698612 Msa0337650:intron 25.0%
! CTCATTAGTTGAATATGAAT+TGG - chr2_4:57698761-57698780 Msa0337650:intron 25.0%
! TTCAATGGTCAAACTAAAAA+TGG + chr2_4:57698847-57698866 None:intergenic 25.0%
ATTATACGAAAACAGTTGGA+GGG - chr2_4:57696299-57696318 Msa0337650:intron 30.0%
TATGTATTTGTGAGACTGTT+TGG - chr2_4:57696360-57696379 Msa0337650:intron 30.0%
ATGTATTTGTGAGACTGTTT+GGG - chr2_4:57696361-57696380 Msa0337650:intron 30.0%
AAGACTCGAATGCATTAATA+TGG + chr2_4:57696490-57696509 None:intergenic 30.0%
GAATTGGGTTAAAGTGATAT+TGG - chr2_4:57696525-57696544 Msa0337650:intron 30.0%
AAATTGAAAGTTGCAAAAGG+GGG + chr2_4:57696617-57696636 None:intergenic 30.0%
CAAAACAGTAAAAACAACTG+GGG - chr2_4:57696659-57696678 Msa0337650:intron 30.0%
TGAGCAAGTTTCAGATTTAT+AGG - chr2_4:57696690-57696709 Msa0337650:intron 30.0%
GAGCAAGTTTCAGATTTATA+GGG - chr2_4:57696691-57696710 Msa0337650:intron 30.0%
TCAAAATTCAAAGTTGCGAA+AGG - chr2_4:57696779-57696798 Msa0337650:intron 30.0%
ATTATACGAAAACAGTTGGA+GGG - chr2_4:57696299-57696318 Msa0337650:intron 30.0%
AAGACTCGAATGCATTAATA+TGG + chr2_4:57696490-57696509 None:intergenic 30.0%
GAATTGGGTTAAAGTGATAT+TGG - chr2_4:57696525-57696544 Msa0337650:intron 30.0%
AAATTGAAAGTTGCAAAAGG+GGG + chr2_4:57696617-57696636 None:intergenic 30.0%
CAAAACAGTAAAAACAACTG+GGG - chr2_4:57696659-57696678 Msa0337650:intron 30.0%
TGAGCAAGTTTCAGATTTAT+AGG - chr2_4:57696690-57696709 Msa0337650:intron 30.0%
GAGCAAGTTTCAGATTTATA+GGG - chr2_4:57696691-57696710 Msa0337650:intron 30.0%
TCAAAATTCAAAGTTGCGAA+AGG - chr2_4:57696779-57696798 Msa0337650:intron 30.0%
AAGTTGTGTATTGAATGCAT+TGG + chr2_4:57697557-57697576 None:intergenic 30.0%
TTTGCCCCCTATTAAAAAAA+GGG + chr2_4:57697642-57697661 None:intergenic 30.0%
! TTTTGCCCCCTATTAAAAAA+AGG + chr2_4:57697643-57697662 None:intergenic 30.0%
AATAGGTTTAACTGTTCAAC+AGG + chr2_4:57697893-57697912 None:intergenic 30.0%
TACAGTATTTGTTTGACATG+TGG - chr2_4:57697917-57697936 Msa0337650:intron 30.0%
ACAGTATTTGTTTGACATGT+GGG - chr2_4:57697918-57697937 Msa0337650:intron 30.0%
GTGATGTTACTGTGATTTAT+AGG - chr2_4:57698072-57698091 Msa0337650:intron 30.0%
TGATTTATAGGAATCAGTGT+GGG - chr2_4:57698084-57698103 Msa0337650:intron 30.0%
ATAGTGATGTTGCATAAATC+AGG - chr2_4:57698158-57698177 Msa0337650:intron 30.0%
TAGTGATGTTGCATAAATCA+GGG - chr2_4:57698159-57698178 Msa0337650:intron 30.0%
!! AAACTTTGGGTTGGATTTAT+TGG - chr2_4:57698355-57698374 Msa0337650:intron 30.0%
GAATACACTTTCAATCGAAA+CGG + chr2_4:57698406-57698425 None:intergenic 30.0%
!! CTTTTGTTTCTTGCTTGTTT+TGG - chr2_4:57698526-57698545 Msa0337650:intron 30.0%
TTTGGAAGATGATATCAGTT+TGG - chr2_4:57698544-57698563 Msa0337650:intron 30.0%
!!! AACCTGCAAATTTTGAAGTT+AGG - chr2_4:57698724-57698743 Msa0337650:intron 30.0%
!!! ACCTGCAAATTTTGAAGTTA+GGG - chr2_4:57698725-57698744 Msa0337650:intron 30.0%
! TGAAGCGAATCTTTTGAATT+TGG - chr2_4:57698814-57698833 Msa0337650:CDS 30.0%
!! AACACGAAGCTTTGAATCTA+TGG - chr2_4:57695738-57695757 Msa0337650:three_prime_UTR 35.0%
TGAGCAACAAAACGTAATCA+CGG + chr2_4:57696083-57696102 None:intergenic 35.0%
GATTATACGAAAACAGTTGG+AGG - chr2_4:57696298-57696317 Msa0337650:intron 35.0%
! TCGAGTCTTTTTACAAGATG+TGG - chr2_4:57696501-57696520 Msa0337650:intron 35.0%
! CGAGTCTTTTTACAAGATGT+GGG - chr2_4:57696502-57696521 Msa0337650:intron 35.0%
! GAGTCTTTTTACAAGATGTG+GGG - chr2_4:57696503-57696522 Msa0337650:intron 35.0%
! TTTTACAAGATGTGGGGAAT+TGG - chr2_4:57696509-57696528 Msa0337650:intron 35.0%
TTTACAAGATGTGGGGAATT+GGG - chr2_4:57696510-57696529 Msa0337650:intron 35.0%
! GGGTTAAAGTGATATTGGTT+CGG - chr2_4:57696530-57696549 Msa0337650:intron 35.0%
AATTGAAAGTTGCAAAAGGG+GGG + chr2_4:57696616-57696635 None:intergenic 35.0%
TAGGGAAAAGAATATGGCTT+AGG - chr2_4:57696709-57696728 Msa0337650:intron 35.0%
AAAAGAATATGGCTTAGGAC+TGG - chr2_4:57696714-57696733 Msa0337650:intron 35.0%
TGATCTTCTACTGTCTTGAA+TGG - chr2_4:57696742-57696761 Msa0337650:intron 35.0%
AAATTCAAAGTTGCGAAAGG+AGG - chr2_4:57696782-57696801 Msa0337650:intron 35.0%
AATTCAAAGTTGCGAAAGGA+GGG - chr2_4:57696783-57696802 Msa0337650:intron 35.0%
GATTATACGAAAACAGTTGG+AGG - chr2_4:57696298-57696317 Msa0337650:intron 35.0%
! TCGAGTCTTTTTACAAGATG+TGG - chr2_4:57696501-57696520 Msa0337650:intron 35.0%
! CGAGTCTTTTTACAAGATGT+GGG - chr2_4:57696502-57696521 Msa0337650:intron 35.0%
! GAGTCTTTTTACAAGATGTG+GGG - chr2_4:57696503-57696522 Msa0337650:intron 35.0%
! TTTTACAAGATGTGGGGAAT+TGG - chr2_4:57696509-57696528 Msa0337650:intron 35.0%
TTTACAAGATGTGGGGAATT+GGG - chr2_4:57696510-57696529 Msa0337650:intron 35.0%
! GGGTTAAAGTGATATTGGTT+CGG - chr2_4:57696530-57696549 Msa0337650:intron 35.0%
AATTGAAAGTTGCAAAAGGG+GGG + chr2_4:57696616-57696635 None:intergenic 35.0%
TAGGGAAAAGAATATGGCTT+AGG - chr2_4:57696709-57696728 Msa0337650:intron 35.0%
AAAAGAATATGGCTTAGGAC+TGG - chr2_4:57696714-57696733 Msa0337650:intron 35.0%
TGATCTTCTACTGTCTTGAA+TGG - chr2_4:57696742-57696761 Msa0337650:intron 35.0%
AAATTCAAAGTTGCGAAAGG+AGG - chr2_4:57696782-57696801 Msa0337650:intron 35.0%
AATTCAAAGTTGCGAAAGGA+GGG - chr2_4:57696783-57696802 Msa0337650:intron 35.0%
!! TTATTGGTTTCTGCCAATGT+TGG - chr2_4:57697698-57697717 Msa0337650:intron 35.0%
!! TATTGGTTTCTGCCAATGTT+GGG - chr2_4:57697699-57697718 Msa0337650:intron 35.0%
ATCATTACAACACTCTAGCT+CGG + chr2_4:57697825-57697844 None:intergenic 35.0%
AATGAATTTGGGCAACACTA+TGG + chr2_4:57697852-57697871 None:intergenic 35.0%
ATAGTGTTGCCCAAATTCAT+TGG - chr2_4:57697851-57697870 Msa0337650:intron 35.0%
CCATACCATCCAATGAATTT+GGG + chr2_4:57697863-57697882 None:intergenic 35.0%
TCCATACCATCCAATGAATT+TGG + chr2_4:57697864-57697883 None:intergenic 35.0%
CAGTATTTGTTTGACATGTG+GGG - chr2_4:57697919-57697938 Msa0337650:intron 35.0%
GTGTAAAAAGAAGTGGTGAA+AGG - chr2_4:57697945-57697964 Msa0337650:intron 35.0%
AAAGAAGTGGTGAAAGGTTA+TGG - chr2_4:57697951-57697970 Msa0337650:intron 35.0%
! TATGGATGATCTTTGTTGTC+TGG - chr2_4:57697969-57697988 Msa0337650:intron 35.0%
ATGTGCTTGGTTATGATTAG+AGG - chr2_4:57698002-57698021 Msa0337650:intron 35.0%
GTGATTTATAGGAATCAGTG+TGG - chr2_4:57698083-57698102 Msa0337650:intron 35.0%
GATTTATAGGAATCAGTGTG+GGG - chr2_4:57698085-57698104 Msa0337650:intron 35.0%
! GGTTGCTATTGCAAAAGAAT+GGG - chr2_4:57698106-57698125 Msa0337650:intron 35.0%
AGTGATGTTGCATAAATCAG+GGG - chr2_4:57698160-57698179 Msa0337650:intron 35.0%
!! TCTCGTGATGTGTTTTTGTT+TGG - chr2_4:57698234-57698253 Msa0337650:intron 35.0%
GAAAAGGCAAAATATACACG+CGG + chr2_4:57698335-57698354 None:intergenic 35.0%
ATCCAACCCAAAGTTTGAAA+AGG + chr2_4:57698351-57698370 None:intergenic 35.0%
!! TTTGGGTTGGATTTATTGGA+TGG - chr2_4:57698359-57698378 Msa0337650:intron 35.0%
GGTATCAGTGAATTCCTATA+TGG - chr2_4:57698380-57698399 Msa0337650:intron 35.0%
TAATGTAGAGTAAGTTGCAC+TGG - chr2_4:57698443-57698462 Msa0337650:intron 35.0%
GCATTTAGACAAAGCACAAA+AGG + chr2_4:57698507-57698526 None:intergenic 35.0%
!! GCTCAGTTGTTTTATAACGA+TGG - chr2_4:57698566-57698585 Msa0337650:intron 35.0%
TGCTAAGATTGACATGTTCA+AGG - chr2_4:57698653-57698672 Msa0337650:intron 35.0%
GCTAAGATTGACATGTTCAA+GGG - chr2_4:57698654-57698673 Msa0337650:intron 35.0%
TCCCTAACTTCAAAATTTGC+AGG + chr2_4:57698729-57698748 None:intergenic 35.0%
! AGCGAATCTTTTGAATTTGG+AGG - chr2_4:57698817-57698836 Msa0337650:CDS 35.0%
! GCGAATCTTTTGAATTTGGA+GGG - chr2_4:57698818-57698837 Msa0337650:CDS 35.0%
! CGAATCTTTTGAATTTGGAG+GGG - chr2_4:57698819-57698838 Msa0337650:CDS 35.0%
! ATTTAGTCTTCAGATTGCTG+TGG - chr2_4:57698910-57698929 Msa0337650:CDS 35.0%
CAACTGTACACGCAATAAAT+TGG + chr2_4:57699023-57699042 None:intergenic 35.0%
CAATTTATTGCGTGTACAGT+TGG - chr2_4:57699021-57699040 Msa0337650:five_prime_UTR 35.0%
AATGAGACATTCAGCAATGC+GGG + chr2_4:57695923-57695942 None:intergenic 40.0%
CAATGAGACATTCAGCAATG+CGG + chr2_4:57695924-57695943 None:intergenic 40.0%
! TGTGGCATTGTGAGAGTTTT+TGG - chr2_4:57696182-57696201 Msa0337650:intron 40.0%
! AAACAGTTGGAGGGTTTGTT+TGG - chr2_4:57696308-57696327 Msa0337650:intron 40.0%
! AACAGTTGGAGGGTTTGTTT+GGG - chr2_4:57696309-57696328 Msa0337650:intron 40.0%
TGCATTAATATGGCCCTGTA+TGG + chr2_4:57696480-57696499 None:intergenic 40.0%
! GTTCGGCTTAAACACACTTT+TGG - chr2_4:57696547-57696566 Msa0337650:intron 40.0%
! AAACAGTTGGAGGGTTTGTT+TGG - chr2_4:57696308-57696327 Msa0337650:intron 40.0%
! AACAGTTGGAGGGTTTGTTT+GGG - chr2_4:57696309-57696328 Msa0337650:intron 40.0%
TGCATTAATATGGCCCTGTA+TGG + chr2_4:57696480-57696499 None:intergenic 40.0%
! GTTCGGCTTAAACACACTTT+TGG - chr2_4:57696547-57696566 Msa0337650:intron 40.0%
CTTCTACTGTCTTGAATGGT+CGG - chr2_4:57696746-57696765 Msa0337650:intron 40.0%
!! AAAGTGTTTAAAGAGTGCCC+CGG - chr2_4:57697598-57697617 Msa0337650:intron 40.0%
GAAACCAATAAACTCACTCG+TGG + chr2_4:57697689-57697708 None:intergenic 40.0%
!! TATTCGGGAAAGTGTCAGTT+AGG + chr2_4:57697733-57697752 None:intergenic 40.0%
TGTTGCCCAAATTCATTGGA+TGG - chr2_4:57697855-57697874 Msa0337650:intron 40.0%
CCCAAATTCATTGGATGGTA+TGG - chr2_4:57697860-57697879 Msa0337650:intron 40.0%
! GGGGAAAGTGTAAAAAGAAG+TGG - chr2_4:57697938-57697957 Msa0337650:intron 40.0%
TGCTTGGTTATGATTAGAGG+AGG - chr2_4:57698005-57698024 Msa0337650:intron 40.0%
TCACAGTAACATCACATGCA+AGG + chr2_4:57698067-57698086 None:intergenic 40.0%
! GGGTTGCTATTGCAAAAGAA+TGG - chr2_4:57698105-57698124 Msa0337650:intron 40.0%
TGCTATTGCAAAAGAATGGG+TGG - chr2_4:57698109-57698128 Msa0337650:intron 40.0%
AAACACATCACGAGATTGAC+AGG + chr2_4:57698229-57698248 None:intergenic 40.0%
! TGCCTTTTCAAACTTTGGGT+TGG - chr2_4:57698346-57698365 Msa0337650:intron 40.0%
TTCAATCGAAACGGCCATAT+AGG + chr2_4:57698397-57698416 None:intergenic 40.0%
! ACTCTACATTAGCTTCAGAG+TGG + chr2_4:57698434-57698453 None:intergenic 40.0%
TGGCTGTTATATCATATCCG+TGG - chr2_4:57698463-57698482 Msa0337650:intron 40.0%
TGTGCTAAGGAATAGAACCA+CGG + chr2_4:57698483-57698502 None:intergenic 40.0%
AAGCACAAAAGGATGTGCTA+AGG + chr2_4:57698496-57698515 None:intergenic 40.0%
GCAGAATTAAAGTTGCACCA+GGG + chr2_4:57698629-57698648 None:intergenic 40.0%
ACATGTTCAAGGGATCTATG+AGG - chr2_4:57698664-57698683 Msa0337650:intron 40.0%
CACAGCAGTCAATTGTTCAA+TGG + chr2_4:57698862-57698881 None:intergenic 40.0%
GAAGGTGGTTAATTCTTCGC+CGG - chr2_4:57695843-57695862 Msa0337650:three_prime_UTR 45.0%
TAATTCTTCGCCGGTGAAGA+CGG - chr2_4:57695852-57695871 Msa0337650:three_prime_UTR 45.0%
CGCATTGCTGAATGTCTCAT+TGG - chr2_4:57695922-57695941 Msa0337650:three_prime_UTR 45.0%
TTCACTGCTCGCAATGAACA+AGG - chr2_4:57695967-57695986 Msa0337650:CDS 45.0%
TGCAAAAGGGGGGAAACTTA+GGG + chr2_4:57696606-57696625 None:intergenic 45.0%
TTGCAAAAGGGGGGAAACTT+AGG + chr2_4:57696607-57696626 None:intergenic 45.0%
CGAAAGGAGGGAAACTTAGA+GGG - chr2_4:57696795-57696814 Msa0337650:intron 45.0%
AAACTTAGAGGGCTGGAATG+TGG - chr2_4:57696806-57696825 Msa0337650:intron 45.0%
TGCAAAAGGGGGGAAACTTA+GGG + chr2_4:57696606-57696625 None:intergenic 45.0%
TTGCAAAAGGGGGGAAACTT+AGG + chr2_4:57696607-57696626 None:intergenic 45.0%
CGAAAGGAGGGAAACTTAGA+GGG - chr2_4:57696795-57696814 Msa0337650:intron 45.0%
AAACTTAGAGGGCTGGAATG+TGG - chr2_4:57696806-57696825 Msa0337650:intron 45.0%
!! AAGTGTTTAAAGAGTGCCCC+GGG - chr2_4:57697599-57697618 Msa0337650:intron 45.0%
ATCGCAACTTGTGCGAAGTT+AGG - chr2_4:57697662-57697681 Msa0337650:intron 45.0%
TCGCAACTTGTGCGAAGTTA+GGG - chr2_4:57697663-57697682 Msa0337650:intron 45.0%
TAGGACACTAGTCCCAACAT+TGG + chr2_4:57697714-57697733 None:intergenic 45.0%
! ACTCTAGCTCGGATGCATAT+GGG + chr2_4:57697814-57697833 None:intergenic 45.0%
! TGGTTTGTGCATGATGTGCT+TGG - chr2_4:57697989-57698008 Msa0337650:intron 45.0%
CATCACATGCAAGGAACTCA+AGG + chr2_4:57698058-57698077 None:intergenic 45.0%
TTGCAAAAGAATGGGTGGTG+TGG - chr2_4:57698114-57698133 Msa0337650:intron 45.0%
! TGGGTGGTGTGGCTATATTT+TGG - chr2_4:57698125-57698144 Msa0337650:intron 45.0%
CCGCAACAGGCAGAAAAAAA+CGG + chr2_4:57698201-57698220 None:intergenic 45.0%
!!! CCGTTTTTTTCTGCCTGTTG+CGG - chr2_4:57698198-57698217 Msa0337650:intron 45.0%
!!! TTTTTTTCTGCCTGTTGCGG+TGG - chr2_4:57698201-57698220 Msa0337650:intron 45.0%
CGCAGAATTAAAGTTGCACC+AGG + chr2_4:57698630-57698649 None:intergenic 45.0%
GTTCAAGGGATCTATGAGGT+TGG - chr2_4:57698668-57698687 Msa0337650:intron 45.0%
CTATGAGGTTGGCAGTTGAT+AGG - chr2_4:57698679-57698698 Msa0337650:intron 45.0%
TGAACAATTGACTGCTGTGC+AGG - chr2_4:57698863-57698882 Msa0337650:CDS 45.0%
CTGCTGTGCAGGTTCATATA+TGG - chr2_4:57698874-57698893 Msa0337650:CDS 45.0%
!! AAAATATTTAACAATATTTA+CGG + chr2_4:57699000-57699019 None:intergenic 5.0%
GCGAAAACCAGTGTTCGTGA+AGG - chr2_4:57695777-57695796 Msa0337650:three_prime_UTR 50.0%
TGATCGACCTTCACGAACAC+TGG + chr2_4:57695787-57695806 None:intergenic 50.0%
AAGGTCGATCAGCTGAAACC+TGG - chr2_4:57695796-57695815 Msa0337650:three_prime_UTR 50.0%
CAGCTGAAACCTGGAACCAA+TGG - chr2_4:57695805-57695824 Msa0337650:three_prime_UTR 50.0%
!! AGAGTGTGTCCATTGGTTCC+AGG + chr2_4:57695817-57695836 None:intergenic 50.0%
CACTGTCAGAGTGTGTCCAT+TGG + chr2_4:57695824-57695843 None:intergenic 50.0%
TGGACACACTCTGACAGTGA+AGG - chr2_4:57695825-57695844 Msa0337650:three_prime_UTR 50.0%
ACACACTCTGACAGTGAAGG+TGG - chr2_4:57695828-57695847 Msa0337650:three_prime_UTR 50.0%
AGACATTCAGCAATGCGGGA+AGG + chr2_4:57695919-57695938 None:intergenic 50.0%
! GTTGGAGGGTTTGTTTGGGT+TGG - chr2_4:57696313-57696332 Msa0337650:intron 50.0%
AAAAGGGGGGAAACTTAGGG+GGG + chr2_4:57696603-57696622 None:intergenic 50.0%
CAAAAGGGGGGAAACTTAGG+GGG + chr2_4:57696604-57696623 None:intergenic 50.0%
GCAAAAGGGGGGAAACTTAG+GGG + chr2_4:57696605-57696624 None:intergenic 50.0%
GCGAAAGGAGGGAAACTTAG+AGG - chr2_4:57696794-57696813 Msa0337650:intron 50.0%
!! AGGATGCTTAAAGAGTGCCC+CGG + chr2_4:57696866-57696885 None:intergenic 50.0%
! GTTGGAGGGTTTGTTTGGGT+TGG - chr2_4:57696313-57696332 Msa0337650:intron 50.0%
AAAAGGGGGGAAACTTAGGG+GGG + chr2_4:57696603-57696622 None:intergenic 50.0%
CAAAAGGGGGGAAACTTAGG+GGG + chr2_4:57696604-57696623 None:intergenic 50.0%
GCAAAAGGGGGGAAACTTAG+GGG + chr2_4:57696605-57696624 None:intergenic 50.0%
GCGAAAGGAGGGAAACTTAG+AGG - chr2_4:57696794-57696813 Msa0337650:intron 50.0%
!! AGGATGCTTAAAGAGTGCCC+CGG + chr2_4:57696866-57696885 None:intergenic 50.0%
!! AGTGTTTAAAGAGTGCCCCG+GGG - chr2_4:57697600-57697619 Msa0337650:intron 50.0%
AAATGTTAACGAGTGCCCCC+GGG + chr2_4:57697619-57697638 None:intergenic 50.0%
GAAATGTTAACGAGTGCCCC+CGG + chr2_4:57697620-57697639 None:intergenic 50.0%
AGGGCCACGAGTGAGTTTAT+TGG - chr2_4:57697682-57697701 Msa0337650:intron 50.0%
! CACTCTAGCTCGGATGCATA+TGG + chr2_4:57697815-57697834 None:intergenic 50.0%
GTTGCATAAATCAGGGGCAG+CGG - chr2_4:57698166-57698185 Msa0337650:intron 50.0%
TTGCATAAATCAGGGGCAGC+GGG - chr2_4:57698167-57698186 Msa0337650:intron 50.0%
AAGTTGCACCAGGGTTCATG+AGG + chr2_4:57698620-57698639 None:intergenic 50.0%
!! TGAGGTTGGCAGTTGATAGG+TGG - chr2_4:57698682-57698701 Msa0337650:intron 50.0%
!! GAGGTTGGCAGTTGATAGGT+GGG - chr2_4:57698683-57698702 Msa0337650:intron 50.0%
!! AGGTTGGCAGTTGATAGGTG+GGG - chr2_4:57698684-57698703 Msa0337650:intron 50.0%
CGGTTAGGAACCGTCTTCAC+CGG + chr2_4:57695865-57695884 None:intergenic 55.0%
GTGAAGACGGTTCCTAACCG+CGG - chr2_4:57695865-57695884 Msa0337650:three_prime_UTR 55.0%
AACTTAGGGGGGCTGGAATG+TGG + chr2_4:57696592-57696611 None:intergenic 55.0%
AGGAGGGAAACTTAGAGGGC+TGG - chr2_4:57696799-57696818 Msa0337650:intron 55.0%
! GTCTTGTTAACGAGTGCCCC+CGG - chr2_4:57696844-57696863 Msa0337650:intron 55.0%
TCTTGTTAACGAGTGCCCCC+GGG - chr2_4:57696845-57696864 Msa0337650:intron 55.0%
!! ATGCTTAAAGAGTGCCCCGG+GGG + chr2_4:57696863-57696882 None:intergenic 55.0%
!! GATGCTTAAAGAGTGCCCCG+GGG + chr2_4:57696864-57696883 None:intergenic 55.0%
!! GGATGCTTAAAGAGTGCCCC+GGG + chr2_4:57696865-57696884 None:intergenic 55.0%
AACTTAGGGGGGCTGGAATG+TGG + chr2_4:57696592-57696611 None:intergenic 55.0%
AGGAGGGAAACTTAGAGGGC+TGG - chr2_4:57696799-57696818 Msa0337650:intron 55.0%
! GTCTTGTTAACGAGTGCCCC+CGG - chr2_4:57696844-57696863 Msa0337650:intron 55.0%
TCTTGTTAACGAGTGCCCCC+GGG - chr2_4:57696845-57696864 Msa0337650:intron 55.0%
!! ATGCTTAAAGAGTGCCCCGG+GGG + chr2_4:57696863-57696882 None:intergenic 55.0%
!! GATGCTTAAAGAGTGCCCCG+GGG + chr2_4:57696864-57696883 None:intergenic 55.0%
!! GGATGCTTAAAGAGTGCCCC+GGG + chr2_4:57696865-57696884 None:intergenic 55.0%
!! GTGTTTAAAGAGTGCCCCGG+GGG - chr2_4:57697601-57697620 Msa0337650:intron 55.0%
AATGTTAACGAGTGCCCCCG+GGG + chr2_4:57697618-57697637 None:intergenic 55.0%
TTGACAGGTACCACCGCAAC+AGG + chr2_4:57698214-57698233 None:intergenic 55.0%
!! GGTTGGCAGTTGATAGGTGG+GGG - chr2_4:57698685-57698704 Msa0337650:intron 55.0%
! TGATAGGTGGGGGCGTATAG+AGG - chr2_4:57698695-57698714 Msa0337650:intron 55.0%
AAGACGGTTCCTAACCGCGG+TGG - chr2_4:57695868-57695887 Msa0337650:three_prime_UTR 60.0%
TCCTAACCGCGGTGGTCGAT+CGG - chr2_4:57695876-57695895 Msa0337650:three_prime_UTR 60.0%
CTTGTTAACGAGTGCCCCCG+GGG - chr2_4:57696846-57696865 Msa0337650:intron 60.0%
CTTGTTAACGAGTGCCCCCG+GGG - chr2_4:57696846-57696865 Msa0337650:intron 60.0%
GCAGTGGACCTCATGAACCC+TGG - chr2_4:57698609-57698628 Msa0337650:intron 60.0%
TAACCGCGGTGGTCGATCGG+CGG - chr2_4:57695879-57695898 Msa0337650:three_prime_UTR 65.0%
GCCGATCGACCACCGCGGTT+AGG + chr2_4:57695880-57695899 None:intergenic 70.0%
TCACCGCCGATCGACCACCG+CGG + chr2_4:57695885-57695904 None:intergenic 70.0%
GGGGGGAAACTTAGGGGGGC+TGG + chr2_4:57696599-57696618 None:intergenic 70.0%
GGGGGGAAACTTAGGGGGGC+TGG + chr2_4:57696599-57696618 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 57695693 57699076 57695693 ID=Msa0337650;Name=Msa0337650
chr2_4 mRNA 57695693 57699076 57695693 ID=Msa0337650-mRNA-1;Parent=Msa0337650;Name=Msa0337650-mRNA-1;_AED=0.37;_eAED=0.37;_QI=64|1|1|1|1|1|2|273|140
chr2_4 exon 57695693 57696156 57695693 ID=Msa0337650-mRNA-1:exon:17629;Parent=Msa0337650-mRNA-1
chr2_4 exon 57698781 57699076 57698781 ID=Msa0337650-mRNA-1:exon:17628;Parent=Msa0337650-mRNA-1
chr2_4 five_prime_UTR 57699013 57699076 57699013 ID=Msa0337650-mRNA-1:five_prime_utr;Parent=Msa0337650-mRNA-1
chr2_4 CDS 57698781 57699012 57698781 ID=Msa0337650-mRNA-1:cds;Parent=Msa0337650-mRNA-1
chr2_4 CDS 57695966 57696156 57695966 ID=Msa0337650-mRNA-1:cds;Parent=Msa0337650-mRNA-1
chr2_4 three_prime_UTR 57695693 57695965 57695693 ID=Msa0337650-mRNA-1:three_prime_utr;Parent=Msa0337650-mRNA-1
Gene Sequence

>Msa0337650

ATGGCGACACAAACTGCAAAGCGAAAACCAGTGTTCGTGAAGGTCGATCAGCTGAAACCTGGAACCAATGGACACACTCTGACAGTGAAGGTGGTTAATTCTTCGCCGGTGAAGACGGTTCCTAACCGCGGTGGTCGATCGGCGGTGATTGCTTCTCGTCCTTCCCGCATTGCTGAATGTCTCATTGGTGATGAAACTGCTAGCATAATCTTCACTGCTCGCAATGAACAAGTGGACCTCATGAACCCTGGTGCAACTTTAATTCTGCGTAATGCTAAGATTGACATGTTCAAGGGATCTATGAGGTTGGCAGTTGATAGGTGGGGGCGTATAGAGGTCACAGAACCTGCAAATTTTGAAGTTAGGGAAGATAACAATCTCTCATTAGTTGAATATGAATTGGTCAATGTCGTTGAAGAGTAA

Protein sequence

>Msa0337650

MATQTAKRKPVFVKVDQLKPGTNGHTLTVKVVNSSPVKTVPNRGGRSAVIASRPSRIAECLIGDETASIIFTARNEQVDLMNPGATLILRNAKIDMFKGSMRLAVDRWGRIEVTEPANFEVREDNNLSLVEYELVNVVEE*