Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0960420 | XP_003619782.1 | 80.769 | 338 | 7 | 2 | 3 | 282 | 2 | 339 | 0.0 | 525 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0960420 | sp|Q8LEB2|ADHL6_ARATH | 64.140 | 343 | 62 | 3 | 1 | 282 | 1 | 343 | 1.12e-151 | 432 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035120 | Msa0960420 | 0.805644 | 1.208215e-49 | -8.615850e-47 |
| Msa0036890 | Msa0960420 | 0.803686 | 3.096940e-49 | -8.615850e-47 |
| Msa0052870 | Msa0960420 | 0.805543 | 1.268881e-49 | -8.615850e-47 |
| Msa0626270 | Msa0960420 | 0.805194 | 1.501725e-49 | -8.615850e-47 |
| Msa0626460 | Msa0960420 | 0.813304 | 2.739023e-51 | -8.615850e-47 |
| Msa0664540 | Msa0960420 | 0.821326 | 4.284912e-53 | -8.615850e-47 |
| Msa0833530 | Msa0960420 | 0.812421 | 4.275660e-51 | -8.615850e-47 |
| Msa0187540 | Msa0960420 | 0.815186 | 1.051836e-51 | -8.615850e-47 |
| Msa0481630 | Msa0960420 | 0.824300 | 8.698337e-54 | -8.615850e-47 |
| Msa0307570 | Msa0960420 | 0.802466 | 5.536875e-49 | -8.615850e-47 |
| Msa0871720 | Msa0960420 | 0.805275 | 1.444427e-49 | -8.615850e-47 |
| Msa0894680 | Msa0960420 | 0.825608 | 4.272953e-54 | -8.615850e-47 |
| Msa0921390 | Msa0960420 | 0.804500 | 2.097218e-49 | -8.615850e-47 |
| Msa0960420 | Msa1031390 | 0.805030 | 1.625002e-49 | -8.615850e-47 |
| Msa0960420 | Msa1111380 | 0.802539 | 5.348184e-49 | -8.615850e-47 |
| Msa0960420 | Msa1129330 | 0.831590 | 1.531294e-55 | -8.615850e-47 |
| Msa0960420 | Msa1288760 | 0.808102 | 3.652063e-50 | -8.615850e-47 |
| Msa0960420 | Msa1341840 | 0.811931 | 5.468751e-51 | -8.615850e-47 |
| Msa0960420 | Msa1427110 | 0.802705 | 4.942105e-49 | -8.615850e-47 |
| Msa0960420 | Msa1461370 | 0.809713 | 1.651457e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0960420 | MtrunA17_Chr6g0478081 | 80.769 | 338 | 7 | 2 | 3 | 282 | 2 | 339 | 0.0 | 525 |
| Msa0960420 | MtrunA17_Chr3g0125911 | 47.788 | 339 | 115 | 3 | 4 | 280 | 2 | 340 | 2.44e-105 | 311 |
| Msa0960420 | MtrunA17_Chr3g0125961 | 46.608 | 339 | 119 | 3 | 4 | 280 | 2 | 340 | 5.19e-104 | 308 |
| Msa0960420 | MtrunA17_Chr3g0125941 | 46.176 | 340 | 121 | 3 | 3 | 280 | 2 | 341 | 2.88e-102 | 303 |
| Msa0960420 | MtrunA17_Chr1g0183131 | 46.726 | 336 | 117 | 3 | 9 | 282 | 6 | 341 | 1.96e-100 | 298 |
| Msa0960420 | MtrunA17_Chr7g0262421 | 46.512 | 344 | 121 | 4 | 1 | 282 | 1 | 343 | 2.81e-100 | 298 |
| Msa0960420 | MtrunA17_Chr5g0440521 | 44.058 | 345 | 129 | 4 | 2 | 282 | 9 | 353 | 4.27e-88 | 268 |
| Msa0960420 | MtrunA17_Chr7g0242291 | 43.491 | 338 | 125 | 5 | 4 | 275 | 13 | 350 | 1.47e-84 | 258 |
| Msa0960420 | MtrunA17_Chr3g0118441 | 41.954 | 348 | 136 | 5 | 1 | 282 | 1 | 348 | 9.20e-83 | 254 |
| Msa0960420 | MtrunA17_Chr3g0132351 | 46.450 | 338 | 115 | 4 | 11 | 282 | 16 | 353 | 1.90e-79 | 245 |
| Msa0960420 | MtrunA17_Chr4g0021211 | 37.612 | 335 | 149 | 3 | 3 | 278 | 25 | 358 | 3.75e-72 | 227 |
| Msa0960420 | MtrunA17_Chr5g0419681 | 37.870 | 338 | 149 | 4 | 5 | 282 | 2 | 338 | 8.75e-72 | 225 |
| Msa0960420 | MtrunA17_Chr7g0242301 | 44.718 | 284 | 120 | 5 | 27 | 275 | 1 | 282 | 1.73e-69 | 218 |
| Msa0960420 | MtrunA17_Chr3g0118431 | 39.516 | 248 | 103 | 4 | 79 | 282 | 18 | 262 | 3.22e-53 | 175 |
| Msa0960420 | MtrunA17_Chr8g0385221 | 31.963 | 219 | 137 | 7 | 47 | 256 | 107 | 322 | 2.35e-22 | 95.9 |
| Msa0960420 | MtrunA17_Chr6g0474141 | 29.767 | 215 | 120 | 6 | 47 | 255 | 72 | 261 | 1.25e-14 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0960420 | AT5G24760.1 | 64.140 | 343 | 62 | 3 | 1 | 282 | 1 | 343 | 1.13e-152 | 432 |
| Msa0960420 | AT5G24760.2 | 63.694 | 314 | 56 | 2 | 27 | 282 | 1 | 314 | 1.28e-139 | 397 |
| Msa0960420 | AT5G24760.3 | 63.694 | 314 | 56 | 2 | 27 | 282 | 1 | 314 | 1.28e-139 | 397 |
| Msa0960420 | AT1G77120.1 | 48.974 | 341 | 110 | 4 | 5 | 282 | 2 | 341 | 2.05e-108 | 319 |
| Msa0960420 | AT5G24760.4 | 63.755 | 229 | 42 | 1 | 95 | 282 | 1 | 229 | 5.43e-101 | 296 |
| Msa0960420 | AT5G43940.1 | 47.321 | 336 | 115 | 3 | 9 | 282 | 6 | 341 | 1.75e-100 | 299 |
| Msa0960420 | AT1G64710.1 | 45.970 | 335 | 116 | 4 | 9 | 278 | 6 | 340 | 3.66e-97 | 291 |
| Msa0960420 | AT5G43940.2 | 45.402 | 348 | 116 | 4 | 9 | 282 | 6 | 353 | 2.54e-96 | 289 |
| Msa0960420 | AT1G32780.1 | 40.643 | 342 | 131 | 4 | 9 | 278 | 7 | 348 | 4.79e-87 | 265 |
| Msa0960420 | AT1G64710.2 | 43.533 | 317 | 114 | 4 | 27 | 278 | 1 | 317 | 3.74e-85 | 259 |
| Msa0960420 | AT5G42250.1 | 43.353 | 346 | 131 | 5 | 2 | 282 | 8 | 353 | 6.29e-85 | 259 |
| Msa0960420 | AT4G22110.2 | 44.706 | 340 | 117 | 5 | 11 | 282 | 15 | 351 | 1.34e-83 | 256 |
| Msa0960420 | AT4G22110.1 | 44.706 | 340 | 117 | 5 | 11 | 282 | 15 | 351 | 1.34e-83 | 256 |
| Msa0960420 | AT1G22440.1 | 44.412 | 340 | 118 | 5 | 11 | 282 | 12 | 348 | 2.77e-82 | 253 |
| Msa0960420 | AT1G22430.2 | 42.980 | 349 | 124 | 6 | 4 | 282 | 7 | 350 | 3.65e-82 | 253 |
| Msa0960420 | AT1G22430.1 | 42.980 | 349 | 124 | 6 | 4 | 282 | 7 | 350 | 3.65e-82 | 253 |
| Msa0960420 | AT1G22430.3 | 48.043 | 281 | 112 | 5 | 4 | 255 | 7 | 282 | 2.89e-79 | 243 |
| Msa0960420 | AT1G64710.3 | 44.361 | 266 | 104 | 3 | 57 | 278 | 6 | 271 | 1.20e-72 | 226 |
| Msa0960420 | AT4G22110.3 | 50.000 | 246 | 94 | 3 | 11 | 230 | 15 | 257 | 3.39e-72 | 223 |
| Msa0960420 | AT1G22430.4 | 47.843 | 255 | 100 | 4 | 4 | 230 | 7 | 256 | 2.89e-71 | 221 |
| Msa0960420 | AT1G22430.5 | 47.843 | 255 | 100 | 4 | 4 | 230 | 7 | 256 | 2.89e-71 | 221 |
| Msa0960420 | AT5G63620.1 | 29.779 | 272 | 158 | 10 | 14 | 256 | 57 | 324 | 1.71e-22 | 96.7 |
| Msa0960420 | AT5G63620.2 | 29.779 | 272 | 158 | 10 | 14 | 256 | 57 | 324 | 1.92e-22 | 96.7 |
| Msa0960420 | AT5G63620.3 | 29.020 | 255 | 149 | 9 | 14 | 240 | 57 | 307 | 2.88e-20 | 89.4 |
| Msa0960420 | AT5G51970.1 | 27.442 | 215 | 125 | 6 | 47 | 255 | 74 | 263 | 4.18e-12 | 66.2 |
| Msa0960420 | AT5G51970.2 | 27.442 | 215 | 125 | 6 | 47 | 255 | 74 | 263 | 4.18e-12 | 66.2 |
Find 88 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGACAAGATTTACAGTAAA+AGG | 0.163487 | 6_3:+79817810 | Msa0960420:CDS |
| AACTAATATTTGTCAAGTTT+TGG | 0.171217 | 6_3:+79817752 | Msa0960420:CDS |
| GCCATATTTCCTCGCATATT+TGG | 0.189832 | 6_3:+79816947 | Msa0960420:CDS |
| ACCATTGGAGATTAGGATTA+AGG | 0.205928 | 6_3:+79815911 | Msa0960420:CDS |
| GCCAAATATGCGAGGAAATA+TGG | 0.248039 | 6_3:-79816948 | None:intergenic |
| CTGACAGGAAGAACTTTAAA+AGG | 0.257915 | 6_3:+79819232 | Msa0960420:intron |
| TACCACACAGCTAAATCTTT+TGG | 0.263883 | 6_3:+79818736 | Msa0960420:intron |
| GGATCCACAGTGGTTATATT+TGG | 0.292524 | 6_3:+79818332 | Msa0960420:CDS |
| AGGGGTGCATCTAGAATAAT+TGG | 0.320329 | 6_3:+79818584 | Msa0960420:CDS |
| AATCCACAGAAGTGTGAAAA+TGG | 0.320595 | 6_3:+79818617 | Msa0960420:CDS |
| GGAACTGCACTCACCTTTGC+AGG | 0.322567 | 6_3:-79815717 | None:intergenic |
| GAATACACAGTTGTTCATTC+TGG | 0.335258 | 6_3:+79817873 | Msa0960420:CDS |
| CTCCTCAACCATTGGAGATT+AGG | 0.340698 | 6_3:+79815904 | Msa0960420:CDS |
| TCTAGATGCACCCCTTAGTT+TGG | 0.343778 | 6_3:-79818576 | None:intergenic |
| ACTTTAAAAGGATCTTTATT+CGG | 0.356032 | 6_3:+79819244 | Msa0960420:CDS |
| TCATGCAGGCTGTGCAAATC+AGG | 0.386476 | 6_3:+79817726 | Msa0960420:CDS |
| ATATTTGGCCACGAAGCATC+TGG | 0.392686 | 6_3:+79816962 | Msa0960420:CDS |
| GGCATTGGTGATGGAGGAAG+TGG | 0.403806 | 6_3:+79815872 | Msa0960420:CDS |
| CTTAGCTGTGGGGTTTCTGC+AGG | 0.404405 | 6_3:+79817945 | Msa0960420:CDS |
| TTGCACAAGGGGCCAAACTA+AGG | 0.405871 | 6_3:+79818564 | Msa0960420:CDS |
| CTTTGCAGGTTATGACTTGA+GGG | 0.413577 | 6_3:-79815703 | None:intergenic |
| ATATTTGGTCTTGGAACTGT+TGG | 0.421795 | 6_3:+79818347 | Msa0960420:CDS |
| ACACCGCAATAATGATAAAC+AGG | 0.427206 | 6_3:-79817837 | None:intergenic |
| CCTTTGCAGGTTATGACTTG+AGG | 0.431283 | 6_3:-79815704 | None:intergenic |
| ACAGTGGTTATATTTGGTCT+TGG | 0.438849 | 6_3:+79818338 | Msa0960420:CDS |
| CTCCACCTACCACTCCTAGA+TGG | 0.448743 | 6_3:+79815552 | Msa0960420:five_prime_UTR |
| GCTGCAGTAGCATGGGGAGC+TGG | 0.479502 | 6_3:+79815846 | Msa0960420:intron |
| AGCTGGAGAGGCATTGGTGA+TGG | 0.483911 | 6_3:+79815863 | Msa0960420:CDS |
| AGACAAGATTTACAGTAAAA+GGG | 0.484730 | 6_3:+79817811 | Msa0960420:CDS |
| GGTGGTAGGTTCCTCCATCT+AGG | 0.486427 | 6_3:-79815566 | None:intergenic |
| AAGGATCTTTATTCGGAGGA+TGG | 0.488243 | 6_3:+79819251 | Msa0960420:CDS |
| ATGGGGAGCTGGAGAGGCAT+TGG | 0.489033 | 6_3:+79815857 | Msa0960420:CDS |
| TTGGTAGTAGTGGTGGTGGT+AGG | 0.489094 | 6_3:-79815580 | None:intergenic |
| AAATATGCATTCTTAGCTGT+GGG | 0.493066 | 6_3:+79817934 | Msa0960420:CDS |
| GTTGTTGTTGTTGGTAGTAG+TGG | 0.498583 | 6_3:-79815590 | None:intergenic |
| ACAAACAGCTGCAGTAGCAT+GGG | 0.502030 | 6_3:+79815839 | Msa0960420:intron |
| GCAGGATTGTTGAGAGCGTA+GGG | 0.505817 | 6_3:+79817640 | Msa0960420:intron |
| TGCAGGATTGTTGAGAGCGT+AGG | 0.508503 | 6_3:+79817639 | Msa0960420:intron |
| ATTGTTGAGAGCGTAGGGCT+AGG | 0.509736 | 6_3:+79817645 | Msa0960420:CDS |
| ATCCTAATCTCCAATGGTTG+AGG | 0.520022 | 6_3:-79815906 | None:intergenic |
| TAGGAGAATGCATGTCATGC+AGG | 0.520032 | 6_3:+79817712 | Msa0960420:CDS |
| AGTCAGTCCTCCTCAACCAT+TGG | 0.520494 | 6_3:+79815896 | Msa0960420:CDS |
| TGCACAAGGGGCCAAACTAA+GGG | 0.521604 | 6_3:+79818565 | Msa0960420:CDS |
| AACAAACAGCTGCAGTAGCA+TGG | 0.525473 | 6_3:+79815838 | Msa0960420:intron |
| GAATAATCGACCTGCACGAT+AGG | 0.525925 | 6_3:-79818796 | None:intergenic |
| GTTATTAAGCGCATTACTGA+TGG | 0.526131 | 6_3:+79818905 | Msa0960420:CDS |
| ATTAAGCGCATTACTGATGG+TGG | 0.531944 | 6_3:+79818908 | Msa0960420:CDS |
| ACATACTTCTCTACTAATGA+AGG | 0.534955 | 6_3:-79819292 | None:intergenic |
| TAGATTACCCAGATGCTTCG+TGG | 0.537317 | 6_3:-79816970 | None:intergenic |
| GGAGTGACTGAATTCAAAGA+AGG | 0.538722 | 6_3:+79817666 | Msa0960420:CDS |
| TTAAAAGGATCTTTATTCGG+AGG | 0.548166 | 6_3:+79819247 | Msa0960420:CDS |
| AAAATATGCATTCTTAGCTG+TGG | 0.552327 | 6_3:+79817933 | Msa0960420:CDS |
| GTTGTTGTTGGTAGTAGTGG+TGG | 0.567116 | 6_3:-79815587 | None:intergenic |
| GTTGTTGGTAGTAGTGGTGG+TGG | 0.567554 | 6_3:-79815584 | None:intergenic |
| CCTATTCAATAGGTTGCACA+AGG | 0.568491 | 6_3:+79818551 | Msa0960420:intron |
| TGATGATGATGATGCCATGA+TGG | 0.570891 | 6_3:-79815678 | None:intergenic |
| CTCCATCTAGGAGTGGTAGG+TGG | 0.571436 | 6_3:-79815554 | None:intergenic |
| CATCTAGGAGTGGTAGGTGG+AGG | 0.572927 | 6_3:-79815551 | None:intergenic |
| TTACACAGAAACAGCCATCA+TGG | 0.573259 | 6_3:+79815664 | Msa0960420:exon |
| GAGTGACTGAATTCAAAGAA+GGG | 0.576891 | 6_3:+79817667 | Msa0960420:CDS |
| GTACAAAGAACCTATCGTGC+AGG | 0.585896 | 6_3:+79818786 | Msa0960420:CDS |
| AATGTTGCCGATGTGACAAA+AGG | 0.586589 | 6_3:+79818311 | Msa0960420:CDS |
| AGTAGCATGGGGAGCTGGAG+AGG | 0.586768 | 6_3:+79815851 | Msa0960420:CDS |
| TTAAGCGCATTACTGATGGT+GGG | 0.587004 | 6_3:+79818909 | Msa0960420:CDS |
| TAAGCGCATTACTGATGGTG+GGG | 0.587569 | 6_3:+79818910 | Msa0960420:CDS |
| TGGAGAGGCATTGGTGATGG+AGG | 0.587850 | 6_3:+79815866 | Msa0960420:CDS |
| AAGCCTGTTTATCATTATTG+CGG | 0.594521 | 6_3:+79817834 | Msa0960420:CDS |
| TTCCTCCATCTAGGAGTGGT+AGG | 0.597890 | 6_3:-79815557 | None:intergenic |
| CCTCAAGTCATAACCTGCAA+AGG | 0.598569 | 6_3:+79815704 | Msa0960420:CDS |
| ACCTTAATCCTAATCTCCAA+TGG | 0.599263 | 6_3:-79815912 | None:intergenic |
| ATAGGTTCTTTGTACAAACT+CGG | 0.599694 | 6_3:-79818778 | None:intergenic |
| CTAATCTCCAATGGTTGAGG+AGG | 0.600166 | 6_3:-79815903 | None:intergenic |
| CTATGAAAACTGTTAACACA+TGG | 0.605315 | 6_3:-79817692 | None:intergenic |
| TATTTGGCCACGAAGCATCT+GGG | 0.608176 | 6_3:+79816963 | Msa0960420:CDS |
| TATTCAATAGGTTGCACAAG+GGG | 0.615252 | 6_3:+79818553 | Msa0960420:intron |
| TTTGCAGGTTATGACTTGAG+GGG | 0.620062 | 6_3:-79815702 | None:intergenic |
| TAGGTTCCTCCATCTAGGAG+TGG | 0.645649 | 6_3:-79815561 | None:intergenic |
| GCACAAGGGGCCAAACTAAG+GGG | 0.646651 | 6_3:+79818566 | Msa0960420:CDS |
| AGTAGAGAAGTATGTCAACA+AGG | 0.658436 | 6_3:+79819300 | Msa0960420:CDS |
| CACCTACCACTCCTAGATGG+AGG | 0.660876 | 6_3:+79815555 | Msa0960420:five_prime_UTR |
| AGTGACTGAATTCAAAGAAG+GGG | 0.664041 | 6_3:+79817668 | Msa0960420:CDS |
| AATATGCATTCTTAGCTGTG+GGG | 0.673736 | 6_3:+79817935 | Msa0960420:CDS |
| CAAACAGCTGCAGTAGCATG+GGG | 0.680428 | 6_3:+79815840 | Msa0960420:intron |
| CAATAGGTCTAGGTGCAGCG+TGG | 0.686039 | 6_3:+79818288 | Msa0960420:intron |
| GCTTCGTGGCCAAATATGCG+AGG | 0.691472 | 6_3:-79816956 | None:intergenic |
| CTATTCAATAGGTTGCACAA+GGG | 0.695720 | 6_3:+79818552 | Msa0960420:intron |
| AAGACCAAATATAACCACTG+TGG | 0.739475 | 6_3:-79818336 | None:intergenic |
| TGTGACAAAAGGATCCACAG+TGG | 0.822984 | 6_3:+79818322 | Msa0960420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATATTGAAAATAATAAAAT+TGG | - | chr6_3:79816211-79816230 | None:intergenic | 10.0% |
| !! | AAAAATACTAAAAAGGAAAT+GGG | - | chr6_3:79815741-79815760 | None:intergenic | 15.0% |
| !! | AAAAAATACTAAAAAGGAAA+TGG | - | chr6_3:79815742-79815761 | None:intergenic | 15.0% |
| !!! | GTTTAATTTTGATACATTAT+CGG | - | chr6_3:79816152-79816171 | None:intergenic | 15.0% |
| !! | TATCTATAGAAAACAAAAAA+GGG | - | chr6_3:79816440-79816459 | None:intergenic | 15.0% |
| !! | ATATCTATAGAAAACAAAAA+AGG | - | chr6_3:79816441-79816460 | None:intergenic | 15.0% |
| !! | ATACTGAATATAAAACTAAA+TGG | + | chr6_3:79816890-79816909 | Msa0960420:intron | 15.0% |
| !! | TATAGTTAATAATAAACACT+TGG | - | chr6_3:79817980-79817999 | None:intergenic | 15.0% |
| !! | AGAATATAAGATAGATATAA+TGG | - | chr6_3:79818398-79818417 | None:intergenic | 15.0% |
| !! | AAAATAAATTCAGAGTAATT+TGG | - | chr6_3:79818659-79818678 | None:intergenic | 15.0% |
| !!! | TTTATTTTTAAACCTTAGAA+CGG | + | chr6_3:79818671-79818690 | Msa0960420:intron | 15.0% |
| !!! | TAAAAAGAAGTTTAAGACAA+TGG | - | chr6_3:79815629-79815648 | None:intergenic | 20.0% |
| !! | CATACATATCAAAACAAATA+TGG | - | chr6_3:79815776-79815795 | None:intergenic | 20.0% |
| !! | TTTGTTTGTTTCATAAACAA+TGG | - | chr6_3:79815824-79815843 | None:intergenic | 20.0% |
| !!! | TTTCTAAAGTCAAACATTAA+TGG | + | chr6_3:79816110-79816129 | Msa0960420:intron | 20.0% |
| !! | ATCTATAGAAAACAACTAAT+TGG | - | chr6_3:79816242-79816261 | None:intergenic | 20.0% |
| !!! | TTGTTTTCTATAGATATTGT+CGG | + | chr6_3:79816444-79816463 | Msa0960420:intron | 20.0% |
| !!! | ATTTTGTTTGACATGATTAA+TGG | + | chr6_3:79816555-79816574 | Msa0960420:intron | 20.0% |
| !! | TCGATAATAATTTGAGAAAA+TGG | - | chr6_3:79816669-79816688 | None:intergenic | 20.0% |
| !! | AAGAATAAATATTCATTAGC+AGG | - | chr6_3:79816844-79816863 | None:intergenic | 20.0% |
| !! | TCTTCAAATAAAACAACTAA+AGG | - | chr6_3:79817037-79817056 | None:intergenic | 20.0% |
| !! | TTTAACCAAATTATTGCAAA+AGG | + | chr6_3:79817574-79817593 | Msa0960420:intron | 20.0% |
| !!! | AACTAATATTTGTCAAGTTT+TGG | + | chr6_3:79817752-79817771 | Msa0960420:CDS | 20.0% |
| !!! | ACTAATATTTGTCAAGTTTT+GGG | + | chr6_3:79817753-79817772 | Msa0960420:CDS | 20.0% |
| !! | CTATAAGAAATTGAAACATA+AGG | + | chr6_3:79817995-79818014 | Msa0960420:intron | 20.0% |
| !! | AAATTGAAACATAAGGTTTA+AGG | + | chr6_3:79818002-79818021 | Msa0960420:intron | 20.0% |
| !!! | TACTAGTTAGTTATTTTCAA+GGG | + | chr6_3:79818164-79818183 | Msa0960420:intron | 20.0% |
| !!! | ACTTTAAAAGGATCTTTATT+CGG | + | chr6_3:79819244-79819263 | Msa0960420:CDS | 20.0% |
| !! | TAAATTGTTGTTGTTGTTGT+TGG | - | chr6_3:79815602-79815621 | None:intergenic | 25.0% |
| !!! | TTAGTTGTTTTCTATAGATG+AGG | + | chr6_3:79816243-79816262 | Msa0960420:intron | 25.0% |
| !!! | TAGTTGTTTTCTATAGATGA+GGG | + | chr6_3:79816244-79816263 | Msa0960420:intron | 25.0% |
| !! | TGTTTTCTATAGATATTGTC+GGG | + | chr6_3:79816445-79816464 | Msa0960420:intron | 25.0% |
| ! | ATGTCAAACAAAATGTTGAT+TGG | - | chr6_3:79816549-79816568 | None:intergenic | 25.0% |
| ! | TCTTAAGAACTGTAATATGT+AGG | - | chr6_3:79816766-79816785 | None:intergenic | 25.0% |
| ! | AATAAAAGCTAATGAAAGCT+TGG | + | chr6_3:79816810-79816829 | Msa0960420:intron | 25.0% |
| ! | ATGGAATTACATCTAACATA+AGG | + | chr6_3:79816909-79816928 | Msa0960420:intron | 25.0% |
| !! | TCATTTTAAACTCGGTAAAT+CGG | - | chr6_3:79817255-79817274 | None:intergenic | 25.0% |
| !! | GATGATTCTCATTTTAAACT+CGG | - | chr6_3:79817263-79817282 | None:intergenic | 25.0% |
| ! | TTATGTATATGCATGAGAAT+GGG | + | chr6_3:79817413-79817432 | Msa0960420:intron | 25.0% |
| ! | AATTATATTGTGAACCTTGA+TGG | - | chr6_3:79817528-79817547 | None:intergenic | 25.0% |
| !! | TTACACCTTTTGCAATAATT+TGG | - | chr6_3:79817582-79817601 | None:intergenic | 25.0% |
| ! | ACTATATTCAACATCTACTA+TGG | - | chr6_3:79817609-79817628 | None:intergenic | 25.0% |
| ! | AGATGTTGAATATAGTGTAA+TGG | + | chr6_3:79817613-79817632 | Msa0960420:intron | 25.0% |
| ! | AAGACAAGATTTACAGTAAA+AGG | + | chr6_3:79817810-79817829 | Msa0960420:CDS | 25.0% |
| ! | AGACAAGATTTACAGTAAAA+GGG | + | chr6_3:79817811-79817830 | Msa0960420:CDS | 25.0% |
| ! | AATAACTAACTAGTACTAGA+AGG | - | chr6_3:79818159-79818178 | None:intergenic | 25.0% |
| !!! | GTACTAGTTAGTTATTTTCA+AGG | + | chr6_3:79818163-79818182 | Msa0960420:intron | 25.0% |
| !!! | CTCAAAGTTTTGTTTCTAAA+TGG | + | chr6_3:79818194-79818213 | Msa0960420:intron | 25.0% |
| ! | CAACTTTGCATTATAACAAT+AGG | + | chr6_3:79818272-79818291 | Msa0960420:intron | 25.0% |
| !! | TAATTTTCTTTTTGCTCTTG+TGG | + | chr6_3:79818476-79818495 | Msa0960420:intron | 25.0% |
| ! | ATTCATCTATTAAGATCATG+AGG | - | chr6_3:79818503-79818522 | None:intergenic | 25.0% |
| ! | TATAACAAAACATGACTTGA+GGG | - | chr6_3:79819018-79819037 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | + | chr6_3:79819095-79819114 | Msa0960420:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | + | chr6_3:79819096-79819115 | Msa0960420:intron | 25.0% |
| TTGGAGACAAGAAGTAAAAA+GGG | - | chr6_3:79816192-79816211 | None:intergenic | 30.0% | |
| ATTGGAGACAAGAAGTAAAA+AGG | - | chr6_3:79816193-79816212 | None:intergenic | 30.0% | |
| !! | AGTTGTTTTCTATAGATGAG+GGG | + | chr6_3:79816245-79816264 | Msa0960420:intron | 30.0% |
| TATCCAATTACATCTCACAA+AGG | - | chr6_3:79816490-79816509 | None:intergenic | 30.0% | |
| !! | CAGTTTTAATCTGGAAGTAT+TGG | - | chr6_3:79816595-79816614 | None:intergenic | 30.0% |
| !! | CATAAGGTGTTTTTATATGC+AGG | + | chr6_3:79816925-79816944 | Msa0960420:intron | 30.0% |
| TACACTTAATGTTCTACTGT+TGG | + | chr6_3:79816991-79817010 | Msa0960420:intron | 30.0% | |
| CACTACAATAGATGAATCAT+TGG | + | chr6_3:79817200-79817219 | Msa0960420:intron | 30.0% | |
| GTTATGTATATGCATGAGAA+TGG | + | chr6_3:79817412-79817431 | Msa0960420:intron | 30.0% | |
| !! | ATATAGTGTAATGGTTTTGC+AGG | + | chr6_3:79817622-79817641 | Msa0960420:intron | 30.0% |
| CTATGAAAACTGTTAACACA+TGG | - | chr6_3:79817695-79817714 | None:intergenic | 30.0% | |
| ! | CATGTGTTAACAGTTTTCAT+AGG | + | chr6_3:79817693-79817712 | Msa0960420:CDS | 30.0% |
| !!! | TATTTGTCAAGTTTTGGGAT+TGG | + | chr6_3:79817758-79817777 | Msa0960420:CDS | 30.0% |
| AAGCCTGTTTATCATTATTG+CGG | + | chr6_3:79817834-79817853 | Msa0960420:CDS | 30.0% | |
| ! | AGAATGCATATTTTCTCAAG+AGG | - | chr6_3:79817927-79817946 | None:intergenic | 30.0% |
| AAAATATGCATTCTTAGCTG+TGG | + | chr6_3:79817933-79817952 | Msa0960420:CDS | 30.0% | |
| AAATATGCATTCTTAGCTGT+GGG | + | chr6_3:79817934-79817953 | Msa0960420:CDS | 30.0% | |
| !!! | AGTTTTGTTTCTAAATGGAC+AGG | + | chr6_3:79818199-79818218 | Msa0960420:intron | 30.0% |
| TGCATTATAACAATAGGTCT+AGG | + | chr6_3:79818278-79818297 | Msa0960420:intron | 30.0% | |
| ATAGGTTCTTTGTACAAACT+CGG | - | chr6_3:79818781-79818800 | None:intergenic | 30.0% | |
| ! | CCTGAAATTTTCAACACAAA+TGG | - | chr6_3:79818886-79818905 | None:intergenic | 30.0% |
| CCATTTGTGTTGAAAATTTC+AGG | + | chr6_3:79818883-79818902 | Msa0960420:intron | 30.0% | |
| CTATAACAAAACATGACTTG+AGG | - | chr6_3:79819019-79819038 | None:intergenic | 30.0% | |
| ! | TATCTTTCCTTGTTTACAAC+AGG | + | chr6_3:79819138-79819157 | Msa0960420:intron | 30.0% |
| ! | ATCTTTCCTTGTTTACAACA+GGG | + | chr6_3:79819139-79819158 | Msa0960420:intron | 30.0% |
| TTAAAAGGATCTTTATTCGG+AGG | + | chr6_3:79819247-79819266 | Msa0960420:CDS | 30.0% | |
| ! | AATGAAGGAAGATCAGTTTT+AGG | - | chr6_3:79819280-79819299 | None:intergenic | 30.0% |
| ACATACTTCTCTACTAATGA+AGG | - | chr6_3:79819295-79819314 | None:intergenic | 30.0% | |
| ACCATTGGAGATTAGGATTA+AGG | + | chr6_3:79815911-79815930 | Msa0960420:CDS | 35.0% | |
| ACCTTAATCCTAATCTCCAA+TGG | - | chr6_3:79815915-79815934 | None:intergenic | 35.0% | |
| ACAGTCTCTTGTGTAAAAAC+AGG | + | chr6_3:79816334-79816353 | Msa0960420:intron | 35.0% | |
| CAGTCTCTTGTGTAAAAACA+GGG | + | chr6_3:79816335-79816354 | Msa0960420:intron | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | + | chr6_3:79816340-79816359 | Msa0960420:intron | 35.0% | |
| ACTGAAGTAACAACATGTGT+CGG | - | chr6_3:79816642-79816661 | None:intergenic | 35.0% | |
| AGAGTGACATTGATCAACTA+TGG | + | chr6_3:79817147-79817166 | Msa0960420:intron | 35.0% | |
| GAGTGACATTGATCAACTAT+GGG | + | chr6_3:79817148-79817167 | Msa0960420:intron | 35.0% | |
| ACATTGATCAACTATGGGAA+TGG | + | chr6_3:79817153-79817172 | Msa0960420:intron | 35.0% | |
| !!! | TGTGTGATATTTTGACCGTA+AGG | - | chr6_3:79817182-79817201 | None:intergenic | 35.0% |
| TCGGTAAATCGGATTTCAAA+CGG | - | chr6_3:79817244-79817263 | None:intergenic | 35.0% | |
| CAATCCAGGTCCATAAAAAA+TGG | + | chr6_3:79817345-79817364 | Msa0960420:intron | 35.0% | |
| CAGGTCCATAAAAAATGGTA+GGG | + | chr6_3:79817350-79817369 | Msa0960420:intron | 35.0% | |
| AATTTACAGCTATGGCTAGT+TGG | - | chr6_3:79817449-79817468 | None:intergenic | 35.0% | |
| ! | TTGATGGTACAGCAAAATAC+AGG | - | chr6_3:79817512-79817531 | None:intergenic | 35.0% |
| !! | TGTATTTTGCTGTACCATCA+AGG | + | chr6_3:79817511-79817530 | Msa0960420:intron | 35.0% |
| AGTCATGTCTATGTGAATTG+CGG | - | chr6_3:79817555-79817574 | None:intergenic | 35.0% | |
| GAGTGACTGAATTCAAAGAA+GGG | + | chr6_3:79817667-79817686 | Msa0960420:CDS | 35.0% | |
| AGTGACTGAATTCAAAGAAG+GGG | + | chr6_3:79817668-79817687 | Msa0960420:CDS | 35.0% | |
| !!! | AGTTTTGGGATTGGAAAGAA+AGG | + | chr6_3:79817767-79817786 | Msa0960420:CDS | 35.0% |
| !!! | GTTTTGGGATTGGAAAGAAA+GGG | + | chr6_3:79817768-79817787 | Msa0960420:CDS | 35.0% |
| ACACCGCAATAATGATAAAC+AGG | - | chr6_3:79817840-79817859 | None:intergenic | 35.0% | |
| GAATACACAGTTGTTCATTC+TGG | + | chr6_3:79817873-79817892 | Msa0960420:CDS | 35.0% | |
| !! | ATTTTCTCAAGAGGTACATG+AGG | - | chr6_3:79817918-79817937 | None:intergenic | 35.0% |
| AATATGCATTCTTAGCTGTG+GGG | + | chr6_3:79817935-79817954 | Msa0960420:CDS | 35.0% | |
| ACATAAAGTGACACTCAGTA+TGG | - | chr6_3:79818049-79818068 | None:intergenic | 35.0% | |
| ATTACTCAGAAGTAGTCCTA+CGG | - | chr6_3:79818090-79818109 | None:intergenic | 35.0% | |
| AACTAACTAGTACTAGAAGG+TGG | - | chr6_3:79818156-79818175 | None:intergenic | 35.0% | |
| AAGACCAAATATAACCACTG+TGG | - | chr6_3:79818339-79818358 | None:intergenic | 35.0% | |
| ACAGTGGTTATATTTGGTCT+TGG | + | chr6_3:79818338-79818357 | Msa0960420:CDS | 35.0% | |
| !! | ATATTTGGTCTTGGAACTGT+TGG | + | chr6_3:79818347-79818366 | Msa0960420:CDS | 35.0% |
| TTTCTGTAAGTCCAAGTACT+CGG | + | chr6_3:79818372-79818391 | Msa0960420:intron | 35.0% | |
| ! | GAATTCTCTTTGTGCTTTTG+CGG | - | chr6_3:79818429-79818448 | None:intergenic | 35.0% |
| TGAATAGGAGAGTCATGATT+TGG | - | chr6_3:79818539-79818558 | None:intergenic | 35.0% | |
| TCATGACTCTCCTATTCAAT+AGG | + | chr6_3:79818541-79818560 | Msa0960420:intron | 35.0% | |
| CTATTCAATAGGTTGCACAA+GGG | + | chr6_3:79818552-79818571 | Msa0960420:intron | 35.0% | |
| TATTCAATAGGTTGCACAAG+GGG | + | chr6_3:79818553-79818572 | Msa0960420:intron | 35.0% | |
| ! | AATCCACAGAAGTGTGAAAA+TGG | + | chr6_3:79818617-79818636 | Msa0960420:CDS | 35.0% |
| ! | TTACCATTTTCACACTTCTG+TGG | - | chr6_3:79818623-79818642 | None:intergenic | 35.0% |
| ! | TACCACACAGCTAAATCTTT+TGG | + | chr6_3:79818736-79818755 | Msa0960420:intron | 35.0% |
| ! | ACCACACAGCTAAATCTTTT+GGG | + | chr6_3:79818737-79818756 | Msa0960420:intron | 35.0% |
| TGCAATTGTGCATGTGAAAT+TGG | - | chr6_3:79818839-79818858 | None:intergenic | 35.0% | |
| GTTATTAAGCGCATTACTGA+TGG | + | chr6_3:79818905-79818924 | Msa0960420:CDS | 35.0% | |
| !! | GATTTCTGTTTTGAATGTGC+AGG | + | chr6_3:79818935-79818954 | Msa0960420:CDS | 35.0% |
| ! | TCTTTCCTTGTTTACAACAG+GGG | + | chr6_3:79819140-79819159 | Msa0960420:intron | 35.0% |
| !!! | CTTTTAAAGTTCTTCCTGTC+AGG | - | chr6_3:79819234-79819253 | None:intergenic | 35.0% |
| CTGACAGGAAGAACTTTAAA+AGG | + | chr6_3:79819232-79819251 | Msa0960420:intron | 35.0% | |
| ! | AGTAGAGAAGTATGTCAACA+AGG | + | chr6_3:79819300-79819319 | Msa0960420:CDS | 35.0% |
| !! | GTTGTTGTTGTTGGTAGTAG+TGG | - | chr6_3:79815593-79815612 | None:intergenic | 40.0% |
| TTACACAGAAACAGCCATCA+TGG | + | chr6_3:79815664-79815683 | Msa0960420:exon | 40.0% | |
| ! | TGATGATGATGATGCCATGA+TGG | - | chr6_3:79815681-79815700 | None:intergenic | 40.0% |
| TTTGCAGGTTATGACTTGAG+GGG | - | chr6_3:79815705-79815724 | None:intergenic | 40.0% | |
| CTTTGCAGGTTATGACTTGA+GGG | - | chr6_3:79815706-79815725 | None:intergenic | 40.0% | |
| ATCCTAATCTCCAATGGTTG+AGG | - | chr6_3:79815909-79815928 | None:intergenic | 40.0% | |
| AAGATCACTACGACAAAGAG+AGG | - | chr6_3:79815946-79815965 | None:intergenic | 40.0% | |
| TCGTAGTGATCTTTCTGCTT+GGG | + | chr6_3:79815953-79815972 | Msa0960420:intron | 40.0% | |
| AGACAAGAAGTAAAAAGGGC+AGG | - | chr6_3:79816188-79816207 | None:intergenic | 40.0% | |
| GTTGTTGTCATGTGACTGTA+AGG | + | chr6_3:79816290-79816309 | Msa0960420:intron | 40.0% | |
| TTACACAAGAGACTGTTTCC+AGG | - | chr6_3:79816330-79816349 | None:intergenic | 40.0% | |
| GTTGCGTACAATACACCAAA+TGG | + | chr6_3:79816362-79816381 | Msa0960420:intron | 40.0% | |
| CGTACAATACACCAAATGGT+CGG | + | chr6_3:79816366-79816385 | Msa0960420:intron | 40.0% | |
| GAAAACAAAAAAGGGCAACC+CGG | - | chr6_3:79816432-79816451 | None:intergenic | 40.0% | |
| TCGGGTCATCATACAAGAAT+TGG | + | chr6_3:79816463-79816482 | Msa0960420:intron | 40.0% | |
| GGTCCTTTGTGAGATGTAAT+TGG | + | chr6_3:79816484-79816503 | Msa0960420:intron | 40.0% | |
| !! | CGTCAGACACAGTTTTAATC+TGG | - | chr6_3:79816604-79816623 | None:intergenic | 40.0% |
| TGAAGTAACAACATGTGTCG+GGG | - | chr6_3:79816640-79816659 | None:intergenic | 40.0% | |
| CTGAAGTAACAACATGTGTC+GGG | - | chr6_3:79816641-79816660 | None:intergenic | 40.0% | |
| GCCATATTTCCTCGCATATT+TGG | + | chr6_3:79816947-79816966 | Msa0960420:CDS | 40.0% | |
| GCCAAATATGCGAGGAAATA+TGG | - | chr6_3:79816951-79816970 | None:intergenic | 40.0% | |
| ! | CTATGGGAATGGATTCCTTA+CGG | + | chr6_3:79817164-79817183 | Msa0960420:intron | 40.0% |
| ATTTACTGCAGATAGTAGGC+TGG | - | chr6_3:79817304-79817323 | None:intergenic | 40.0% | |
| ACGCATTTACTGCAGATAGT+AGG | - | chr6_3:79817308-79817327 | None:intergenic | 40.0% | |
| ATGCGTGATACTATGACTGA+AGG | + | chr6_3:79817322-79817341 | Msa0960420:intron | 40.0% | |
| !!! | CCTACCATTTTTTATGGACC+TGG | - | chr6_3:79817352-79817371 | None:intergenic | 40.0% |
| CCAGGTCCATAAAAAATGGT+AGG | + | chr6_3:79817349-79817368 | Msa0960420:intron | 40.0% | |
| !!! | CTGCACCCTACCATTTTTTA+TGG | - | chr6_3:79817358-79817377 | None:intergenic | 40.0% |
| CTAGCCATAGCTGTAAATTG+CGG | + | chr6_3:79817450-79817469 | Msa0960420:intron | 40.0% | |
| GGAGTGACTGAATTCAAAGA+AGG | + | chr6_3:79817666-79817685 | Msa0960420:CDS | 40.0% | |
| AGTATGGACGAAGAGATTAC+TGG | - | chr6_3:79818033-79818052 | None:intergenic | 40.0% | |
| TTACTCAGAAGTAGTCCTAC+GGG | - | chr6_3:79818089-79818108 | None:intergenic | 40.0% | |
| TAACTAGTACTAGAAGGTGG+TGG | - | chr6_3:79818153-79818172 | None:intergenic | 40.0% | |
| AATGTTGCCGATGTGACAAA+AGG | + | chr6_3:79818311-79818330 | Msa0960420:CDS | 40.0% | |
| ! | TGTGGATCCTTTTGTCACAT+CGG | - | chr6_3:79818321-79818340 | None:intergenic | 40.0% |
| GGATCCACAGTGGTTATATT+TGG | + | chr6_3:79818332-79818351 | Msa0960420:CDS | 40.0% | |
| GAGTACTTGGACTTACAGAA+AGG | - | chr6_3:79818373-79818392 | None:intergenic | 40.0% | |
| AGATATAATGGCCGAGTACT+TGG | - | chr6_3:79818386-79818405 | None:intergenic | 40.0% | |
| CCTTGTGCAACCTATTGAAT+AGG | - | chr6_3:79818554-79818573 | None:intergenic | 40.0% | |
| CCTATTCAATAGGTTGCACA+AGG | + | chr6_3:79818551-79818570 | Msa0960420:intron | 40.0% | |
| ! | AGGGGTGCATCTAGAATAAT+TGG | + | chr6_3:79818584-79818603 | Msa0960420:CDS | 40.0% |
| AGAGATTATGAGCCGTTCTA+AGG | - | chr6_3:79818686-79818705 | None:intergenic | 40.0% | |
| TCCCAAAAGATTTAGCTGTG+TGG | - | chr6_3:79818741-79818760 | None:intergenic | 40.0% | |
| ATTAAGCGCATTACTGATGG+TGG | + | chr6_3:79818908-79818927 | Msa0960420:CDS | 40.0% | |
| TTAAGCGCATTACTGATGGT+GGG | + | chr6_3:79818909-79818928 | Msa0960420:CDS | 40.0% | |
| AATTCAAGTCAGACCCTGTT+TGG | - | chr6_3:79819112-79819131 | None:intergenic | 40.0% | |
| ! | CATTATGGACTATTCCTGAC+AGG | + | chr6_3:79819217-79819236 | Msa0960420:intron | 40.0% |
| AAGGATCTTTATTCGGAGGA+TGG | + | chr6_3:79819251-79819270 | Msa0960420:CDS | 40.0% | |
| !! | GTTGTTGTTGGTAGTAGTGG+TGG | - | chr6_3:79815590-79815609 | None:intergenic | 45.0% |
| CCTTTGCAGGTTATGACTTG+AGG | - | chr6_3:79815707-79815726 | None:intergenic | 45.0% | |
| CCTCAAGTCATAACCTGCAA+AGG | + | chr6_3:79815704-79815723 | Msa0960420:CDS | 45.0% | |
| AACAAACAGCTGCAGTAGCA+TGG | + | chr6_3:79815838-79815857 | Msa0960420:intron | 45.0% | |
| ACAAACAGCTGCAGTAGCAT+GGG | + | chr6_3:79815839-79815858 | Msa0960420:intron | 45.0% | |
| CTAATCTCCAATGGTTGAGG+AGG | - | chr6_3:79815906-79815925 | None:intergenic | 45.0% | |
| CTCCTCAACCATTGGAGATT+AGG | + | chr6_3:79815904-79815923 | Msa0960420:CDS | 45.0% | |
| ATCACTACGACAAAGAGAGG+TGG | - | chr6_3:79815943-79815962 | None:intergenic | 45.0% | |
| GTCGTAGTGATCTTTCTGCT+TGG | + | chr6_3:79815952-79815971 | Msa0960420:intron | 45.0% | |
| CTATAGATGAGGGGTAACCT+TGG | + | chr6_3:79816254-79816273 | Msa0960420:intron | 45.0% | |
| CAACTTTACCAGTTGTGCCA+AGG | - | chr6_3:79816274-79816293 | None:intergenic | 45.0% | |
| GTCATGTGACTGTAAGGTCA+CGG | + | chr6_3:79816296-79816315 | Msa0960420:intron | 45.0% | |
| TCATGTGACTGTAAGGTCAC+GGG | + | chr6_3:79816297-79816316 | Msa0960420:intron | 45.0% | |
| ! | ATATTTGGCCACGAAGCATC+TGG | + | chr6_3:79816962-79816981 | Msa0960420:CDS | 45.0% |
| ! | TATTTGGCCACGAAGCATCT+GGG | + | chr6_3:79816963-79816982 | Msa0960420:CDS | 45.0% |
| TAGATTACCCAGATGCTTCG+TGG | - | chr6_3:79816973-79816992 | None:intergenic | 45.0% | |
| ATGTCACTCTAACTGAGCGT+TGG | - | chr6_3:79817137-79817156 | None:intergenic | 45.0% | |
| AGATAGTAGGCTGGAATCGT+TGG | - | chr6_3:79817295-79817314 | None:intergenic | 45.0% | |
| ACTATGACTGAAGGCAATCC+AGG | + | chr6_3:79817331-79817350 | Msa0960420:intron | 45.0% | |
| CAGACCGCAATTTACAGCTA+TGG | - | chr6_3:79817457-79817476 | None:intergenic | 45.0% | |
| CAAATGCAATTGCGGCACAT+TGG | + | chr6_3:79817477-79817496 | Msa0960420:intron | 45.0% | |
| TAGGAGAATGCATGTCATGC+AGG | + | chr6_3:79817712-79817731 | Msa0960420:CDS | 45.0% | |
| ! | AGTCCTACGGGTTACACAAT+GGG | - | chr6_3:79818077-79818096 | None:intergenic | 45.0% |
| ! | TAGTCCTACGGGTTACACAA+TGG | - | chr6_3:79818078-79818097 | None:intergenic | 45.0% |
| !! | AAGGTGGTGGAAATTCGCTA+TGG | - | chr6_3:79818140-79818159 | None:intergenic | 45.0% |
| TGTGACAAAAGGATCCACAG+TGG | + | chr6_3:79818322-79818341 | Msa0960420:CDS | 45.0% | |
| TCTAGATGCACCCCTTAGTT+TGG | - | chr6_3:79818579-79818598 | None:intergenic | 45.0% | |
| GTACAAAGAACCTATCGTGC+AGG | + | chr6_3:79818786-79818805 | Msa0960420:CDS | 45.0% | |
| GAATAATCGACCTGCACGAT+AGG | - | chr6_3:79818799-79818818 | None:intergenic | 45.0% | |
| ! | TAAGCGCATTACTGATGGTG+GGG | + | chr6_3:79818910-79818929 | Msa0960420:CDS | 45.0% |
| ACAGCATGATTGCAATGCAG+TGG | - | chr6_3:79818978-79818997 | None:intergenic | 45.0% | |
| ! | TTCCTTGTTTACAACAGGGG+TGG | + | chr6_3:79819143-79819162 | Msa0960420:intron | 45.0% |
| ! | TCCTTGTTTACAACAGGGGT+GGG | + | chr6_3:79819144-79819163 | Msa0960420:intron | 45.0% |
| !! | TGTAACACTTGGTGTGCCAA+AGG | + | chr6_3:79819174-79819193 | Msa0960420:intron | 45.0% |
| CCATAATGAGCTGACATCTC+AGG | - | chr6_3:79819205-79819224 | None:intergenic | 45.0% | |
| CCTGAGATGTCAGCTCATTA+TGG | + | chr6_3:79819202-79819221 | Msa0960420:intron | 45.0% | |
| !! | TAAAAAAAAAAATACTAAAA+AGG | - | chr6_3:79815748-79815767 | None:intergenic | 5.0% |
| TTCCTCCATCTAGGAGTGGT+AGG | - | chr6_3:79815560-79815579 | None:intergenic | 50.0% | |
| TAGGTTCCTCCATCTAGGAG+TGG | - | chr6_3:79815564-79815583 | None:intergenic | 50.0% | |
| !! | TTGGTAGTAGTGGTGGTGGT+AGG | - | chr6_3:79815583-79815602 | None:intergenic | 50.0% |
| !! | GTTGTTGGTAGTAGTGGTGG+TGG | - | chr6_3:79815587-79815606 | None:intergenic | 50.0% |
| CAAACAGCTGCAGTAGCATG+GGG | + | chr6_3:79815840-79815859 | Msa0960420:intron | 50.0% | |
| AGTCAGTCCTCCTCAACCAT+TGG | + | chr6_3:79815896-79815915 | Msa0960420:CDS | 50.0% | |
| CTAAAGCTCCCGCATACACA+GGG | - | chr6_3:79816405-79816424 | None:intergenic | 50.0% | |
| ACTAAAGCTCCCGCATACAC+AGG | - | chr6_3:79816406-79816425 | None:intergenic | 50.0% | |
| AGTAGGCTGGAATCGTTGGA+CGG | - | chr6_3:79817291-79817310 | None:intergenic | 50.0% | |
| GCGGTCTGCAAATGCAATTG+CGG | + | chr6_3:79817469-79817488 | Msa0960420:intron | 50.0% | |
| ! | TGCAGGATTGTTGAGAGCGT+AGG | + | chr6_3:79817639-79817658 | Msa0960420:intron | 50.0% |
| ! | GCAGGATTGTTGAGAGCGTA+GGG | + | chr6_3:79817640-79817659 | Msa0960420:intron | 50.0% |
| ! | ATTGTTGAGAGCGTAGGGCT+AGG | + | chr6_3:79817645-79817664 | Msa0960420:CDS | 50.0% |
| TCATGCAGGCTGTGCAAATC+AGG | + | chr6_3:79817726-79817745 | Msa0960420:CDS | 50.0% | |
| TGTCCCATTGTGTAACCCGT+AGG | + | chr6_3:79818071-79818090 | Msa0960420:intron | 50.0% | |
| GTGTGTTCTGCAGGTTTCTG+AGG | - | chr6_3:79818118-79818137 | None:intergenic | 50.0% | |
| TTCGCTATGGTGTGTTCTGC+AGG | - | chr6_3:79818127-79818146 | None:intergenic | 50.0% | |
| TTGCACAAGGGGCCAAACTA+AGG | + | chr6_3:79818564-79818583 | Msa0960420:CDS | 50.0% | |
| TGCACAAGGGGCCAAACTAA+GGG | + | chr6_3:79818565-79818584 | Msa0960420:CDS | 50.0% | |
| ! | CCTTGTTTACAACAGGGGTG+GGG | + | chr6_3:79819145-79819164 | Msa0960420:intron | 50.0% |
| TGGGGCTTGACTGTAACACT+TGG | + | chr6_3:79819163-79819182 | Msa0960420:intron | 50.0% | |
| GACATCTCAGGCTTCACCTT+TGG | - | chr6_3:79819193-79819212 | None:intergenic | 50.0% | |
| CATCTAGGAGTGGTAGGTGG+AGG | - | chr6_3:79815554-79815573 | None:intergenic | 55.0% | |
| CTCCACCTACCACTCCTAGA+TGG | + | chr6_3:79815552-79815571 | Msa0960420:five_prime_UTR | 55.0% | |
| CTCCATCTAGGAGTGGTAGG+TGG | - | chr6_3:79815557-79815576 | None:intergenic | 55.0% | |
| CACCTACCACTCCTAGATGG+AGG | + | chr6_3:79815555-79815574 | Msa0960420:five_prime_UTR | 55.0% | |
| GGTGGTAGGTTCCTCCATCT+AGG | - | chr6_3:79815569-79815588 | None:intergenic | 55.0% | |
| GGAACTGCACTCACCTTTGC+AGG | - | chr6_3:79815720-79815739 | None:intergenic | 55.0% | |
| !! | AGCTGGAGAGGCATTGGTGA+TGG | + | chr6_3:79815863-79815882 | Msa0960420:CDS | 55.0% |
| !! | TGGAGAGGCATTGGTGATGG+AGG | + | chr6_3:79815866-79815885 | Msa0960420:CDS | 55.0% |
| !! | GGCATTGGTGATGGAGGAAG+TGG | + | chr6_3:79815872-79815891 | Msa0960420:CDS | 55.0% |
| AGGGGTAACCTTGGCACAAC+TGG | + | chr6_3:79816263-79816282 | Msa0960420:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr6_3:79816309-79816328 | Msa0960420:intron | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | + | chr6_3:79816410-79816429 | Msa0960420:intron | 55.0% |
| TGTGTCGGGGTAGTGAGTGT+TGG | - | chr6_3:79816627-79816646 | None:intergenic | 55.0% | |
| GCTTCGTGGCCAAATATGCG+AGG | - | chr6_3:79816959-79816978 | None:intergenic | 55.0% | |
| CTTAGCTGTGGGGTTTCTGC+AGG | + | chr6_3:79817945-79817964 | Msa0960420:CDS | 55.0% | |
| CAATAGGTCTAGGTGCAGCG+TGG | + | chr6_3:79818288-79818307 | Msa0960420:intron | 55.0% | |
| GCACAAGGGGCCAAACTAAG+GGG | + | chr6_3:79818566-79818585 | Msa0960420:CDS | 55.0% | |
| CCCCACCCCTGTTGTAAACA+AGG | - | chr6_3:79819148-79819167 | None:intergenic | 55.0% | |
| AGTAGCATGGGGAGCTGGAG+AGG | + | chr6_3:79815851-79815870 | Msa0960420:CDS | 60.0% | |
| ! | ATGGGGAGCTGGAGAGGCAT+TGG | + | chr6_3:79815857-79815876 | Msa0960420:CDS | 60.0% |
| CAAATGGTCGGACCCCTTCC+CGG | + | chr6_3:79816378-79816397 | Msa0960420:intron | 60.0% | |
| CATACACAGGGTCCGGGAAG+GGG | - | chr6_3:79816393-79816412 | None:intergenic | 60.0% | |
| GCATACACAGGGTCCGGGAA+GGG | - | chr6_3:79816394-79816413 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGTGTATG+CGG | + | chr6_3:79816393-79816412 | Msa0960420:intron | 60.0% | |
| TTCCCGGACCCTGTGTATGC+GGG | + | chr6_3:79816394-79816413 | Msa0960420:intron | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | + | chr6_3:79816411-79816430 | Msa0960420:intron | 60.0% |
| GCTGCAGTAGCATGGGGAGC+TGG | + | chr6_3:79815846-79815865 | Msa0960420:intron | 65.0% | |
| CGGGAAGGGGTCCGACCATT+TGG | - | chr6_3:79816380-79816399 | None:intergenic | 65.0% | |
| CGCATACACAGGGTCCGGGA+AGG | - | chr6_3:79816395-79816414 | None:intergenic | 65.0% | |
| CTCCCGCATACACAGGGTCC+GGG | - | chr6_3:79816399-79816418 | None:intergenic | 65.0% | |
| GCTCCCGCATACACAGGGTC+CGG | - | chr6_3:79816400-79816419 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 79815539 | 79819330 | 79815539 | ID=Msa0960420;Name=Msa0960420 |
| chr6_3 | mRNA | 79815539 | 79819330 | 79815539 | ID=Msa0960420-mRNA-1;Parent=Msa0960420;Name=Msa0960420-mRNA-1;_AED=0.28;_eAED=0.28;_QI=144|0.75|0.66|1|1|1|9|0|284 |
| chr6_3 | exon | 79815539 | 79815725 | 79815539 | ID=Msa0960420-mRNA-1:exon:14284;Parent=Msa0960420-mRNA-1 |
| chr6_3 | exon | 79815847 | 79815932 | 79815847 | ID=Msa0960420-mRNA-1:exon:14285;Parent=Msa0960420-mRNA-1 |
| chr6_3 | exon | 79816947 | 79816984 | 79816947 | ID=Msa0960420-mRNA-1:exon:14286;Parent=Msa0960420-mRNA-1 |
| chr6_3 | exon | 79817644 | 79817966 | 79817644 | ID=Msa0960420-mRNA-1:exon:14287;Parent=Msa0960420-mRNA-1 |
| chr6_3 | exon | 79818294 | 79818376 | 79818294 | ID=Msa0960420-mRNA-1:exon:14288;Parent=Msa0960420-mRNA-1 |
| chr6_3 | exon | 79818563 | 79818638 | 79818563 | ID=Msa0960420-mRNA-1:exon:14289;Parent=Msa0960420-mRNA-1 |
| chr6_3 | exon | 79818746 | 79818807 | 79818746 | ID=Msa0960420-mRNA-1:exon:14290;Parent=Msa0960420-mRNA-1 |
| chr6_3 | exon | 79818905 | 79818956 | 79818905 | ID=Msa0960420-mRNA-1:exon:14291;Parent=Msa0960420-mRNA-1 |
| chr6_3 | exon | 79819239 | 79819330 | 79819239 | ID=Msa0960420-mRNA-1:exon:14292;Parent=Msa0960420-mRNA-1 |
| chr6_3 | five_prime_UTR | 79815539 | 79815682 | 79815539 | ID=Msa0960420-mRNA-1:five_prime_utr;Parent=Msa0960420-mRNA-1 |
| chr6_3 | CDS | 79815683 | 79815725 | 79815683 | ID=Msa0960420-mRNA-1:cds;Parent=Msa0960420-mRNA-1 |
| chr6_3 | CDS | 79815847 | 79815932 | 79815847 | ID=Msa0960420-mRNA-1:cds;Parent=Msa0960420-mRNA-1 |
| chr6_3 | CDS | 79816947 | 79816984 | 79816947 | ID=Msa0960420-mRNA-1:cds;Parent=Msa0960420-mRNA-1 |
| chr6_3 | CDS | 79817644 | 79817966 | 79817644 | ID=Msa0960420-mRNA-1:cds;Parent=Msa0960420-mRNA-1 |
| chr6_3 | CDS | 79818294 | 79818376 | 79818294 | ID=Msa0960420-mRNA-1:cds;Parent=Msa0960420-mRNA-1 |
| chr6_3 | CDS | 79818563 | 79818638 | 79818563 | ID=Msa0960420-mRNA-1:cds;Parent=Msa0960420-mRNA-1 |
| chr6_3 | CDS | 79818746 | 79818807 | 79818746 | ID=Msa0960420-mRNA-1:cds;Parent=Msa0960420-mRNA-1 |
| chr6_3 | CDS | 79818905 | 79818956 | 79818905 | ID=Msa0960420-mRNA-1:cds;Parent=Msa0960420-mRNA-1 |
| chr6_3 | CDS | 79819239 | 79819330 | 79819239 | ID=Msa0960420-mRNA-1:cds;Parent=Msa0960420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
