Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0977310 | XP_013451233.1 | 95.455 | 352 | 16 | 0 | 1 | 352 | 1 | 352 | 0.0 | 688 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0977310 | A0A072U815 | 95.455 | 352 | 16 | 0 | 1 | 352 | 1 | 352 | 0.0 | 688 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0619180 | Msa0977310 | 0.803716 | 3.052165e-49 | -8.615850e-47 |
| Msa0640500 | Msa0977310 | 0.816625 | 5.022455e-52 | -8.615850e-47 |
| Msa0743680 | Msa0977310 | 0.803421 | 3.514016e-49 | -8.615850e-47 |
| Msa0753770 | Msa0977310 | 0.834545 | 2.817643e-56 | -8.615850e-47 |
| Msa0790610 | Msa0977310 | 0.802097 | 6.593318e-49 | -8.615850e-47 |
| Msa0795660 | Msa0977310 | 0.809256 | 2.069917e-50 | -8.615850e-47 |
| Msa0188890 | Msa0977310 | 0.807887 | 4.058939e-50 | -8.615850e-47 |
| Msa0212750 | Msa0977310 | -0.816778 | 4.640798e-52 | -8.615850e-47 |
| Msa0231380 | Msa0977310 | 0.801765 | 7.716875e-49 | -8.615850e-47 |
| Msa0431770 | Msa0977310 | 0.835001 | 2.163402e-56 | -8.615850e-47 |
| Msa0437510 | Msa0977310 | 0.804789 | 1.825111e-49 | -8.615850e-47 |
| Msa0465920 | Msa0977310 | 0.807781 | 4.273405e-50 | -8.615850e-47 |
| Msa0465960 | Msa0977310 | 0.833738 | 4.487018e-56 | -8.615850e-47 |
| Msa0466760 | Msa0977310 | 0.806045 | 9.951902e-50 | -8.615850e-47 |
| Msa0506940 | Msa0977310 | 0.840267 | 9.637969e-58 | -8.615850e-47 |
| Msa0517490 | Msa0977310 | 0.807410 | 5.124300e-50 | -8.615850e-47 |
| Msa0542160 | Msa0977310 | 0.807015 | 6.213684e-50 | -8.615850e-47 |
| Msa0863800 | Msa0977310 | 0.806745 | 7.085212e-50 | -8.615850e-47 |
| Msa0940830 | Msa0977310 | 0.826963 | 2.033171e-54 | -8.615850e-47 |
| Msa0947530 | Msa0977310 | -0.804516 | 2.080450e-49 | -8.615850e-47 |
| Msa0977310 | Msa1004420 | 0.816503 | 5.348912e-52 | -8.615850e-47 |
| Msa0977310 | Msa1198880 | 0.801127 | 1.042335e-48 | -8.615850e-47 |
| Msa0977310 | Msa1199290 | 0.800198 | 1.612956e-48 | -8.615850e-47 |
| Msa0977310 | Msa1213770 | 0.800929 | 1.144353e-48 | -8.615850e-47 |
| Msa0977310 | Msa1329450 | 0.813480 | 2.505533e-51 | -8.615850e-47 |
| Msa0977310 | Msa1390230 | 0.816003 | 6.916860e-52 | -8.615850e-47 |
| Msa0977310 | Msa1398860 | 0.818084 | 2.356964e-52 | -8.615850e-47 |
| Msa0977310 | Msa1449910 | 0.803265 | 3.786263e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0977310 | MtrunA17_Chr6g0456671 | 95.455 | 352 | 16 | 0 | 1 | 352 | 1 | 352 | 0.0 | 688 |
| Msa0977310 | MtrunA17_Chr3g0111211 | 84.211 | 95 | 14 | 1 | 1 | 95 | 1 | 94 | 5.13e-49 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0977310 | AT5G15880.1 | 59.490 | 353 | 137 | 4 | 1 | 352 | 1 | 348 | 5.57e-137 | 394 |
Find 68 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCCAGCTCCATCTCTTT+CGG | 0.219554 | 6_4:-12000473 | None:intergenic |
| TTTCCAGCTCCATCTCTTTC+GGG | 0.219643 | 6_4:-12000472 | None:intergenic |
| TAAACATAATTGTATTTATC+AGG | 0.247394 | 6_4:+12000705 | Msa0977310:CDS |
| TTTAATGGTCCACACCAATT+TGG | 0.261848 | 6_4:+11994963 | Msa0977310:five_prime_UTR |
| TCAGCGTCTCTTCTCTAAGC+TGG | 0.349364 | 6_4:-11996961 | None:intergenic |
| TAAAAGCACTGGAGAAGAAA+TGG | 0.355246 | 6_4:+11999471 | Msa0977310:CDS |
| TGAGAATCGGAGAAGAGAAT+TGG | 0.356390 | 6_4:-11995154 | None:intergenic |
| ATCTTTGATATCTGAGGGTT+GGG | 0.368721 | 6_4:+11997340 | Msa0977310:CDS |
| ACCGAAAAGGAAACAGAAAA+TGG | 0.414162 | 6_4:+11995054 | Msa0977310:exon |
| ACGTTGGAGAGAGTTAGTTT+TGG | 0.431307 | 6_4:-11995203 | None:intergenic |
| TGTCAGAGGCTCCTCTGATA+AGG | 0.431656 | 6_4:+12000562 | Msa0977310:CDS |
| TCATTCCTCCACTCGTCATC+AGG | 0.447315 | 6_4:+11995339 | Msa0977310:CDS |
| GGAAGACGCTGAGAGATATC+AGG | 0.451663 | 6_4:-11995259 | None:intergenic |
| GCATGGGCAGCAGATGTAGT+AGG | 0.458104 | 6_4:+11995088 | Msa0977310:CDS |
| TCAGCAACTAGCAGTTAAAC+AGG | 0.459491 | 6_4:+12000220 | Msa0977310:CDS |
| CCTCAGTCTCACCTCTAACT+TGG | 0.461239 | 6_4:-11997071 | None:intergenic |
| AAAGAAGCTGAGGGCTGAGC+TGG | 0.462884 | 6_4:+11997280 | Msa0977310:CDS |
| ATTACTACGGACCAAGTTAG+AGG | 0.481715 | 6_4:+11997060 | Msa0977310:CDS |
| CAGCGTCTCTTCTCTAAGCT+GGG | 0.487301 | 6_4:-11996960 | None:intergenic |
| CTCAGATATCAAAGATTGGC+TGG | 0.488761 | 6_4:-11997333 | None:intergenic |
| AGGCTTCCTTACCATTCTGC+AGG | 0.500613 | 6_4:+12000617 | Msa0977310:CDS |
| AACCCTCAGATATCAAAGAT+TGG | 0.510374 | 6_4:-11997337 | None:intergenic |
| AATCTTTGATATCTGAGGGT+TGG | 0.510746 | 6_4:+11997339 | Msa0977310:CDS |
| AGTTTCTATCAACTAAGAAA+AGG | 0.513082 | 6_4:-12000785 | None:intergenic |
| CATAGTTTGTCAGATTATGA+TGG | 0.513133 | 6_4:+12000587 | Msa0977310:CDS |
| GCAGATGTAGTAGGAGGAAA+CGG | 0.513861 | 6_4:+11995097 | Msa0977310:CDS |
| GGATGAGAAGAAGAAAGAGC+TGG | 0.515451 | 6_4:+11997442 | Msa0977310:CDS |
| AACGTTCGATTCAAGATCTA+CGG | 0.518088 | 6_4:+11995221 | Msa0977310:CDS |
| AAAAGCACTGGAGAAGAAAT+GGG | 0.518715 | 6_4:+11999472 | Msa0977310:CDS |
| AACAAGATAAATAATAGAGC+TGG | 0.523615 | 6_4:+11997371 | Msa0977310:CDS |
| GGAGGATACTGTAAAAGCAC+TGG | 0.527069 | 6_4:+11999460 | Msa0977310:CDS |
| CAGCCAATCTTTGATATCTG+AGG | 0.529090 | 6_4:+11997334 | Msa0977310:CDS |
| AGCAGAGGCTTATGCTACTT+AGG | 0.546956 | 6_4:+12000654 | Msa0977310:CDS |
| AGCCAATCTTTGATATCTGA+GGG | 0.547345 | 6_4:+11997335 | Msa0977310:CDS |
| AAATGGCAGGATTATTAGCA+TGG | 0.550948 | 6_4:+11995071 | Msa0977310:exon |
| TTTCAGTTCTGCCTGCAGAA+TGG | 0.552569 | 6_4:-12000628 | None:intergenic |
| AGGTGTGGGTGTAACCGAAA+AGG | 0.558591 | 6_4:+11995041 | Msa0977310:five_prime_UTR |
| TGCTTTCAGACACAAGCTGA+GGG | 0.558817 | 6_4:+12000431 | Msa0977310:intron |
| CGCTGAGAGATATCAGGAGG+AGG | 0.560401 | 6_4:-11995253 | None:intergenic |
| AGTTGATAGAAACTTATGAC+TGG | 0.561926 | 6_4:+12000794 | Msa0977310:three_prime_UTR |
| AAAAGGAAACAGAAAATGGC+AGG | 0.562050 | 6_4:+11995058 | Msa0977310:exon |
| AGAAATTCACCCGAAAGAGA+TGG | 0.568684 | 6_4:+12000463 | Msa0977310:CDS |
| GCACTAAAACAGCCTTCCCC+AGG | 0.572318 | 6_4:+11999512 | Msa0977310:CDS |
| TTGCTTTCAGACACAAGCTG+AGG | 0.579548 | 6_4:+12000430 | Msa0977310:intron |
| TCACCCGAAAGAGATGGAGC+TGG | 0.584182 | 6_4:+12000469 | Msa0977310:CDS |
| CAATTGCGAGAATAAAATCA+AGG | 0.585165 | 6_4:+11997018 | Msa0977310:CDS |
| GAGGCTTATGCTACTTAGGT+CGG | 0.588156 | 6_4:+12000658 | Msa0977310:CDS |
| AGAGAATGAGCATGAAGATG+AGG | 0.593261 | 6_4:-11995280 | None:intergenic |
| ATGAAACTGAAAAGAAGCTG+AGG | 0.600148 | 6_4:+11997270 | Msa0977310:CDS |
| TTTGATATCTGAGGGTTGGG+AGG | 0.607138 | 6_4:+11997343 | Msa0977310:CDS |
| TGGAGGAGGCTGAATTACTA+CGG | 0.607541 | 6_4:+11997047 | Msa0977310:CDS |
| GCTTAGAGAAGAGACGCTGA+AGG | 0.611996 | 6_4:+11996964 | Msa0977310:CDS |
| TAAGATATAATACCTGGGGA+AGG | 0.628822 | 6_4:-11999524 | None:intergenic |
| TGGGCAGCAGATGTAGTAGG+AGG | 0.629568 | 6_4:+11995091 | Msa0977310:CDS |
| CAGATTATGATGGTCATCAG+AGG | 0.630892 | 6_4:+12000597 | Msa0977310:CDS |
| AATGGCAGGATTATTAGCAT+GGG | 0.635893 | 6_4:+11995072 | Msa0977310:exon |
| GTTCTGCCTGCAGAATGGTA+AGG | 0.637018 | 6_4:-12000623 | None:intergenic |
| CAAACTATGTACCTTATCAG+AGG | 0.643606 | 6_4:-12000573 | None:intergenic |
| GGAATCGAGTTCGCGAACGT+AGG | 0.646521 | 6_4:-11995182 | None:intergenic |
| ACATACCTGATGACGAGTGG+AGG | 0.651856 | 6_4:-11995344 | None:intergenic |
| GCAGAACTGAAAGTCAGCAG+AGG | 0.653838 | 6_4:+12000639 | Msa0977310:CDS |
| AGACGCTGAGAGATATCAGG+AGG | 0.660369 | 6_4:-11995256 | None:intergenic |
| TATTCAATAAGTACAAACAA+AGG | 0.665123 | 6_4:-12000818 | None:intergenic |
| TGAAACTGAAAAGAAGCTGA+GGG | 0.667309 | 6_4:+11997271 | Msa0977310:CDS |
| GTAGATCTTGAATCGAACGT+TGG | 0.668688 | 6_4:-11995219 | None:intergenic |
| GATACATACCTGATGACGAG+TGG | 0.669266 | 6_4:-11995347 | None:intergenic |
| TGGAAAGATTGAATGCACAA+TGG | 0.702297 | 6_4:+12000489 | Msa0977310:CDS |
| GATGTAGTAGGAGGAAACGG+AGG | 0.714297 | 6_4:+11995100 | Msa0977310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTAACTGTTTTTTAA+TGG | + | chr6_4:11994948-11994967 | Msa0977310:five_prime_UTR | 10.0% |
| !! | TTTAAATTTAATTCATGAAA+TGG | + | chr6_4:11995403-11995422 | Msa0977310:intron | 10.0% |
| !! | TGTTAAAATATTATACTTAA+TGG | + | chr6_4:11999201-11999220 | Msa0977310:intron | 10.0% |
| !!! | TACTAAGATAATTTTAATTT+TGG | - | chr6_4:12000743-12000762 | None:intergenic | 10.0% |
| !! | TGTTTAATTCTTAAAATTCT+AGG | + | chr6_4:11996437-11996456 | Msa0977310:intron | 15.0% |
| !!! | CAAGAATCATTTTAAAATTT+CGG | - | chr6_4:11996583-11996602 | None:intergenic | 15.0% |
| !! | ATTGTAGAACTTATTAAAAT+TGG | + | chr6_4:11997787-11997806 | Msa0977310:intron | 15.0% |
| !! | CATTTAGCAATTATTAATTA+TGG | - | chr6_4:11997972-11997991 | None:intergenic | 15.0% |
| !! | ATAGTTATACATTCATATAA+TGG | + | chr6_4:11998637-11998656 | Msa0977310:intron | 15.0% |
| !!! | AACTAAATTGATAATTCAAT+AGG | + | chr6_4:11998885-11998904 | Msa0977310:intron | 15.0% |
| !!! | GTATTTAATTTGCATTTAAA+AGG | - | chr6_4:11999171-11999190 | None:intergenic | 15.0% |
| !! | AAATGAATTATTCTATCAAA+AGG | + | chr6_4:11999995-12000014 | Msa0977310:intron | 15.0% |
| !! | TAAACATAATTGTATTTATC+AGG | + | chr6_4:12000705-12000724 | Msa0977310:CDS | 15.0% |
| !! | TTAAATTACATTTCACTCAA+GGG | - | chr6_4:11995388-11995407 | None:intergenic | 20.0% |
| !! | TTTAAATTACATTTCACTCA+AGG | - | chr6_4:11995389-11995408 | None:intergenic | 20.0% |
| !!! | TCACTTTCTCAAAATTTTAT+CGG | + | chr6_4:11995611-11995630 | Msa0977310:intron | 20.0% |
| !!! | TCCATTTTGTAAATTAGTAT+TGG | + | chr6_4:11996299-11996318 | Msa0977310:intron | 20.0% |
| !! | ACCAATACTAATTTACAAAA+TGG | - | chr6_4:11996303-11996322 | None:intergenic | 20.0% |
| !! | AATTGTTCATTTCTTGAAAT+TGG | + | chr6_4:11996532-11996551 | Msa0977310:intron | 20.0% |
| !! | TGTTTAATTCTTGAAATTGT+AGG | + | chr6_4:11996662-11996681 | Msa0977310:intron | 20.0% |
| !! | TTATTCAAATTGAAAATGCT+CGG | + | chr6_4:11996727-11996746 | Msa0977310:intron | 20.0% |
| !! | GAATAAAATCAAGGAAAAAA+TGG | + | chr6_4:11997027-11997046 | Msa0977310:CDS | 20.0% |
| !! | AGCAATTATTAATTATGGAT+TGG | - | chr6_4:11997967-11997986 | None:intergenic | 20.0% |
| !! | AAATAGATAGAGAAAATAGA+GGG | + | chr6_4:11998268-11998287 | Msa0977310:intron | 20.0% |
| !!! | TATACATTCATATAATGGAA+AGG | + | chr6_4:11998642-11998661 | Msa0977310:intron | 20.0% |
| !!! | ATACATTCATATAATGGAAA+GGG | + | chr6_4:11998643-11998662 | Msa0977310:intron | 20.0% |
| !!! | TTTCTTTTAAGAAATGGATT+AGG | - | chr6_4:11998710-11998729 | None:intergenic | 20.0% |
| !!! | TGTTCATTTCTTTTAAGAAA+TGG | - | chr6_4:11998716-11998735 | None:intergenic | 20.0% |
| !! | TTCATTCAAAACTATAGTTA+TGG | + | chr6_4:11998814-11998833 | Msa0977310:intron | 20.0% |
| !! | TGAATTATCAATTTAGTTGA+AGG | - | chr6_4:11998883-11998902 | None:intergenic | 20.0% |
| !!! | TTAACAAACATTTAAAGTGA+AGG | + | chr6_4:11999224-11999243 | Msa0977310:intron | 20.0% |
| !! | TTAAATTATTGTTTCAGTTC+TGG | - | chr6_4:11999383-11999402 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTGGAATATTTCT+AGG | + | chr6_4:11999873-11999892 | Msa0977310:intron | 20.0% |
| !! | TATTCAATAAGTACAAACAA+AGG | - | chr6_4:12000821-12000840 | None:intergenic | 20.0% |
| !! | TGTTTTCTTCACTTCAATTT+TGG | - | chr6_4:11994991-11995010 | None:intergenic | 25.0% |
| ! | ATTCATGAAATGGAATTGTT+AGG | + | chr6_4:11995413-11995432 | Msa0977310:intron | 25.0% |
| ! | ATCACATTATTTATGTTGCA+CGG | + | chr6_4:11995501-11995520 | Msa0977310:intron | 25.0% |
| ! | AAAAGATATGTATCCAAACA+TGG | - | chr6_4:11996060-11996079 | None:intergenic | 25.0% |
| !!! | ATGCATAAGCTATTTCTATA+AGG | + | chr6_4:11996105-11996124 | Msa0977310:intron | 25.0% |
| !!! | CACATTAGTTGTTTTTAAGT+CGG | + | chr6_4:11996621-11996640 | Msa0977310:intron | 25.0% |
| !!! | AATTTTGGTATGAAACTGTT+TGG | + | chr6_4:11996775-11996794 | Msa0977310:intron | 25.0% |
| !! | GTCGAAGATTTTCAATTTTA+GGG | + | chr6_4:11996811-11996830 | Msa0977310:intron | 25.0% |
| ! | TAAAATCAAGGAAAAAATGG+AGG | + | chr6_4:11997030-11997049 | Msa0977310:CDS | 25.0% |
| ! | AACAAGATAAATAATAGAGC+TGG | + | chr6_4:11997371-11997390 | Msa0977310:CDS | 25.0% |
| ! | AACAACTATGCTAGAAAAAT+TGG | + | chr6_4:11997421-11997440 | Msa0977310:CDS | 25.0% |
| !!! | AAGTGCTTTTTCATATACTA+TGG | + | chr6_4:11997615-11997634 | Msa0977310:intron | 25.0% |
| !!! | AGTGCTTTTTCATATACTAT+GGG | + | chr6_4:11997616-11997635 | Msa0977310:intron | 25.0% |
| ! | AATAAGCTATTTATCCAAAC+AGG | - | chr6_4:11997642-11997661 | None:intergenic | 25.0% |
| ! | AACTTATTTCAATAAGCTAG+AGG | - | chr6_4:11997934-11997953 | None:intergenic | 25.0% |
| ! | TAATTGCTAAATGATTGAAG+TGG | + | chr6_4:11997979-11997998 | Msa0977310:intron | 25.0% |
| ! | TTAGATGTATTTAGAGACAT+TGG | + | chr6_4:11998111-11998130 | Msa0977310:intron | 25.0% |
| ! | TAGATGTATTTAGAGACATT+GGG | + | chr6_4:11998112-11998131 | Msa0977310:intron | 25.0% |
| ! | GAAATAGATAGAGAAAATAG+AGG | + | chr6_4:11998267-11998286 | Msa0977310:intron | 25.0% |
| ! | CAAAAAAAACAGAGGAAAAA+TGG | + | chr6_4:11998389-11998408 | Msa0977310:intron | 25.0% |
| !! | TACATTCATATAATGGAAAG+GGG | + | chr6_4:11998644-11998663 | Msa0977310:intron | 25.0% |
| ! | TCAATTTAGTTGAAGGAAAT+GGG | - | chr6_4:11998876-11998895 | None:intergenic | 25.0% |
| ! | ATCAATTTAGTTGAAGGAAA+TGG | - | chr6_4:11998877-11998896 | None:intergenic | 25.0% |
| ! | AGAAAAAACAGAGAAAATAG+AGG | + | chr6_4:11999025-11999044 | Msa0977310:intron | 25.0% |
| !! | ATTTTCTTTTCAGAGTTCAA+TGG | + | chr6_4:11999439-11999458 | Msa0977310:intron | 25.0% |
| ! | AGAAGTAAGATATAATACCT+GGG | - | chr6_4:11999532-11999551 | None:intergenic | 25.0% |
| !! | TCATGAACTTGTTTATAGTA+GGG | + | chr6_4:11999587-11999606 | Msa0977310:intron | 25.0% |
| ! | TTATGTGATTTCTTGTATGT+TGG | + | chr6_4:11999716-11999735 | Msa0977310:intron | 25.0% |
| !!! | TTTTTTTTTTTCCTTCACGA+TGG | + | chr6_4:11999954-11999973 | Msa0977310:intron | 25.0% |
| !! | TCATTTAGAAAAGTACAAAC+AGG | - | chr6_4:11999981-12000000 | None:intergenic | 25.0% |
| ! | AATAAAAGTAAGAATCCAGT+TGG | + | chr6_4:12000018-12000037 | Msa0977310:intron | 25.0% |
| ! | ATAAAAGTAAGAATCCAGTT+GGG | + | chr6_4:12000019-12000038 | Msa0977310:intron | 25.0% |
| ! | ATAAGATTATGGAAATGGAA+CGG | - | chr6_4:12000058-12000077 | None:intergenic | 25.0% |
| ! | AAACGATAAGATTATGGAAA+TGG | - | chr6_4:12000063-12000082 | None:intergenic | 25.0% |
| ! | CGATAAAAACGATAAGATTA+TGG | - | chr6_4:12000069-12000088 | None:intergenic | 25.0% |
| !! | ATTTTAGATAAACAGCTTCA+TGG | + | chr6_4:12000191-12000210 | Msa0977310:CDS | 25.0% |
| ! | GAAACATAAACAATGAAGTA+TGG | - | chr6_4:12000252-12000271 | None:intergenic | 25.0% |
| !! | TTTTATCGCGACAAAATAAA+TGG | + | chr6_4:12000318-12000337 | Msa0977310:intron | 25.0% |
| ! | AGTTTCTATCAACTAAGAAA+AGG | - | chr6_4:12000788-12000807 | None:intergenic | 25.0% |
| !!! | CTTCAATTTTGGTTCCAAAT+TGG | - | chr6_4:11994980-11994999 | None:intergenic | 30.0% |
| !!! | AACGTAGGTTTTTTGAGAAT+CGG | - | chr6_4:11995170-11995189 | None:intergenic | 30.0% |
| ! | GAAATGGAATTGTTAGGTTT+TGG | + | chr6_4:11995419-11995438 | Msa0977310:intron | 30.0% |
| TTTGCAGCTTATATCGTATA+AGG | + | chr6_4:11996077-11996096 | Msa0977310:intron | 30.0% | |
| TTGCAGCTTATATCGTATAA+GGG | + | chr6_4:11996078-11996097 | Msa0977310:intron | 30.0% | |
| AAGCTATCATGAAAAGCTTA+TGG | + | chr6_4:11996163-11996182 | Msa0977310:intron | 30.0% | |
| !! | ATTTTTGAGCCAGTCAATTT+TGG | + | chr6_4:11996760-11996779 | Msa0977310:intron | 30.0% |
| AGTTTCATACCAAAATTGAC+TGG | - | chr6_4:11996772-11996791 | None:intergenic | 30.0% | |
| ! | GGTCGAAGATTTTCAATTTT+AGG | + | chr6_4:11996810-11996829 | Msa0977310:intron | 30.0% |
| TGAAATTGCAGTAGACAATT+TGG | - | chr6_4:11996867-11996886 | None:intergenic | 30.0% | |
| AAATTGTCTACTGCAATTTC+AGG | + | chr6_4:11996866-11996885 | Msa0977310:intron | 30.0% | |
| AATTGTCTACTGCAATTTCA+GGG | + | chr6_4:11996867-11996886 | Msa0977310:intron | 30.0% | |
| ! | CTTGATTTTATTCTCGCAAT+TGG | - | chr6_4:11997020-11997039 | None:intergenic | 30.0% |
| CAATTGCGAGAATAAAATCA+AGG | + | chr6_4:11997018-11997037 | Msa0977310:CDS | 30.0% | |
| !!! | GTGGTTTGCTATGTATTTTT+GGG | + | chr6_4:11997175-11997194 | Msa0977310:intron | 30.0% |
| !!! | TGTTGTTGATTCGTATGTTT+TGG | + | chr6_4:11997233-11997252 | Msa0977310:intron | 30.0% |
| !!! | GTTGTTGATTCGTATGTTTT+GGG | + | chr6_4:11997234-11997253 | Msa0977310:intron | 30.0% |
| !!! | TTGTTGATTCGTATGTTTTG+GGG | + | chr6_4:11997235-11997254 | Msa0977310:intron | 30.0% |
| TTATTCAGTCAGCTATTCTA+GGG | + | chr6_4:11997583-11997602 | Msa0977310:intron | 30.0% | |
| TCAAATAAGCCAATCTAAAC+AGG | + | chr6_4:11997900-11997919 | Msa0977310:intron | 30.0% | |
| TCAATAAGCTAGAGGAAATA+GGG | - | chr6_4:11997926-11997945 | None:intergenic | 30.0% | |
| TTCAATAAGCTAGAGGAAAT+AGG | - | chr6_4:11997927-11997946 | None:intergenic | 30.0% | |
| TCTTCTGTCAAGTATCAATT+CGG | + | chr6_4:11998026-11998045 | Msa0977310:intron | 30.0% | |
| ! | ATTAGTCTCCAATTTCTCAA+GGG | - | chr6_4:11998062-11998081 | None:intergenic | 30.0% |
| ! | AATTAGTCTCCAATTTCTCA+AGG | - | chr6_4:11998063-11998082 | None:intergenic | 30.0% |
| TAAACACAAGGAACATAACA+CGG | + | chr6_4:11998205-11998224 | Msa0977310:intron | 30.0% | |
| !!! | ATTACCTCTGTTTTTATGCT+TGG | - | chr6_4:11998306-11998325 | None:intergenic | 30.0% |
| CATAAAAACAGAGGTAATAG+AGG | + | chr6_4:11998308-11998327 | Msa0977310:intron | 30.0% | |
| ! | GTTTTCTCTATTTTGTTGCA+TGG | - | chr6_4:11998347-11998366 | None:intergenic | 30.0% |
| CAACAAAATAGAGAAAACAG+TGG | + | chr6_4:11998349-11998368 | Msa0977310:intron | 30.0% | |
| AAAAACGGCAAAAAAAACAG+AGG | + | chr6_4:11998381-11998400 | Msa0977310:intron | 30.0% | |
| !!! | CGCTATTTTTCAAAAGAAAC+AGG | - | chr6_4:11998843-11998862 | None:intergenic | 30.0% |
| AGAGAAAATAGAGGAAAAAC+AGG | + | chr6_4:11999034-11999053 | Msa0977310:intron | 30.0% | |
| !! | ATTATTGTTTCAGTTCTGGA+AGG | - | chr6_4:11999379-11999398 | None:intergenic | 30.0% |
| GAAGTAAGATATAATACCTG+GGG | - | chr6_4:11999531-11999550 | None:intergenic | 30.0% | |
| CAGAAGTAAGATATAATACC+TGG | - | chr6_4:11999533-11999552 | None:intergenic | 30.0% | |
| ! | GTCATGAACTTGTTTATAGT+AGG | + | chr6_4:11999586-11999605 | Msa0977310:intron | 30.0% |
| AAACAAAACTATACTGAGTC+AGG | - | chr6_4:11999663-11999682 | None:intergenic | 30.0% | |
| TTTAGTGATATGTTACCGAA+TGG | + | chr6_4:11999795-11999814 | Msa0977310:intron | 30.0% | |
| ACATGCAGAATAAAACCATT+CGG | - | chr6_4:11999813-11999832 | None:intergenic | 30.0% | |
| !!! | GTTTTGGAATATTTCTAGGT+TGG | + | chr6_4:11999877-11999896 | Msa0977310:intron | 30.0% |
| TAAAAGTAAGAATCCAGTTG+GGG | + | chr6_4:12000020-12000039 | Msa0977310:intron | 30.0% | |
| ! | CATAGTTTGTCAGATTATGA+TGG | + | chr6_4:12000587-12000606 | Msa0977310:CDS | 30.0% |
| !! | AGTTGATAGAAACTTATGAC+TGG | + | chr6_4:12000794-12000813 | Msa0977310:three_prime_UTR | 30.0% |
| TTTAATGGTCCACACCAATT+TGG | + | chr6_4:11994963-11994982 | Msa0977310:five_prime_UTR | 35.0% | |
| !!! | ATTTTGGTTCCAAATTGGTG+TGG | - | chr6_4:11994975-11994994 | None:intergenic | 35.0% |
| ACCAGAAAGAAAAAAGAGAG+AGG | + | chr6_4:11995021-11995040 | Msa0977310:five_prime_UTR | 35.0% | |
| !!! | ACCTCTCTCTTTTTTCTTTC+TGG | - | chr6_4:11995025-11995044 | None:intergenic | 35.0% |
| AAAGAAAAAAGAGAGAGGTG+TGG | + | chr6_4:11995026-11995045 | Msa0977310:five_prime_UTR | 35.0% | |
| ! | AAGAAAAAAGAGAGAGGTGT+GGG | + | chr6_4:11995027-11995046 | Msa0977310:five_prime_UTR | 35.0% |
| ACCGAAAAGGAAACAGAAAA+TGG | + | chr6_4:11995054-11995073 | Msa0977310:exon | 35.0% | |
| !! | GCCATTTTCTGTTTCCTTTT+CGG | - | chr6_4:11995058-11995077 | None:intergenic | 35.0% |
| AAAAGGAAACAGAAAATGGC+AGG | + | chr6_4:11995058-11995077 | Msa0977310:exon | 35.0% | |
| AAATGGCAGGATTATTAGCA+TGG | + | chr6_4:11995071-11995090 | Msa0977310:exon | 35.0% | |
| AATGGCAGGATTATTAGCAT+GGG | + | chr6_4:11995072-11995091 | Msa0977310:exon | 35.0% | |
| AACGTTCGATTCAAGATCTA+CGG | + | chr6_4:11995221-11995240 | Msa0977310:CDS | 35.0% | |
| TGTAGAGAAACTGGTTATTG+TGG | + | chr6_4:11995676-11995695 | Msa0977310:intron | 35.0% | |
| AGTACAGCTTAGATGCTAAA+AGG | - | chr6_4:11995728-11995747 | None:intergenic | 35.0% | |
| TTAGCATCTAAGCTGTACTT+AGG | + | chr6_4:11995729-11995748 | Msa0977310:intron | 35.0% | |
| TAGCATCTAAGCTGTACTTA+GGG | + | chr6_4:11995730-11995749 | Msa0977310:intron | 35.0% | |
| TGGTTACATTCAACCATGTT+TGG | + | chr6_4:11996044-11996063 | Msa0977310:intron | 35.0% | |
| TCAAATAAGCCAATCCAAAC+AGG | + | chr6_4:11996264-11996283 | Msa0977310:intron | 35.0% | |
| CAAATAAGCCAATCCAAACA+GGG | + | chr6_4:11996265-11996284 | Msa0977310:intron | 35.0% | |
| GTAGGTGTTTGTCAATTTAG+TGG | + | chr6_4:11996680-11996699 | Msa0977310:intron | 35.0% | |
| !!! | ATGAGACTGATTTGCTTTTG+TGG | + | chr6_4:11996925-11996944 | Msa0977310:intron | 35.0% |
| !!! | TGATTTGCTTTTGTGGTATG+AGG | + | chr6_4:11996932-11996951 | Msa0977310:intron | 35.0% |
| AATCAAGGAAAAAATGGAGG+AGG | + | chr6_4:11997033-11997052 | Msa0977310:CDS | 35.0% | |
| ATACATAGCAAACCACCAAA+TGG | - | chr6_4:11997171-11997190 | None:intergenic | 35.0% | |
| !!! | GGTGGTTTGCTATGTATTTT+TGG | + | chr6_4:11997174-11997193 | Msa0977310:intron | 35.0% |
| ATGAAACTGAAAAGAAGCTG+AGG | + | chr6_4:11997270-11997289 | Msa0977310:CDS | 35.0% | |
| TGAAACTGAAAAGAAGCTGA+GGG | + | chr6_4:11997271-11997290 | Msa0977310:CDS | 35.0% | |
| AGCCAATCTTTGATATCTGA+GGG | + | chr6_4:11997335-11997354 | Msa0977310:CDS | 35.0% | |
| AACCCTCAGATATCAAAGAT+TGG | - | chr6_4:11997340-11997359 | None:intergenic | 35.0% | |
| AATCTTTGATATCTGAGGGT+TGG | + | chr6_4:11997339-11997358 | Msa0977310:CDS | 35.0% | |
| ATCTTTGATATCTGAGGGTT+GGG | + | chr6_4:11997340-11997359 | Msa0977310:CDS | 35.0% | |
| CTTATTCAGTCAGCTATTCT+AGG | + | chr6_4:11997582-11997601 | Msa0977310:intron | 35.0% | |
| ! | TGATGAAAACAGCTAGCTTA+TGG | - | chr6_4:11997837-11997856 | None:intergenic | 35.0% |
| CTTATCTAGTGGCATAAGTT+TGG | - | chr6_4:11997879-11997898 | None:intergenic | 35.0% | |
| GCTTATTTGAGCTTATCTAG+TGG | - | chr6_4:11997890-11997909 | None:intergenic | 35.0% | |
| ! | AAATGATTGAAGTGGTGTTG+TGG | + | chr6_4:11997987-11998006 | Msa0977310:intron | 35.0% |
| ! | AGATTAGTCCCTTGAGAAAT+TGG | + | chr6_4:11998051-11998070 | Msa0977310:intron | 35.0% |
| TGATTGATTGCAATGTAGTC+AGG | + | chr6_4:11998142-11998161 | Msa0977310:intron | 35.0% | |
| TTGTGTTTACGTTCTTTCAC+CGG | - | chr6_4:11998194-11998213 | None:intergenic | 35.0% | |
| AGAAAATAGAGGGAAAACAG+AGG | + | chr6_4:11998278-11998297 | Msa0977310:intron | 35.0% | |
| AGGTAATAGAGGAAAAACAG+AGG | + | chr6_4:11998319-11998338 | Msa0977310:intron | 35.0% | |
| GGAAAAATGGCAAAAAACAG+AGG | + | chr6_4:11998402-11998421 | Msa0977310:intron | 35.0% | |
| AGTTCAGAAAGATTTACCGT+TGG | - | chr6_4:11998559-11998578 | None:intergenic | 35.0% | |
| ! | CTAAAGAACTTGATAGCAGT+TGG | + | chr6_4:11998594-11998613 | Msa0977310:intron | 35.0% |
| ! | ATTCATATAATGGAAAGGGG+AGG | + | chr6_4:11998647-11998666 | Msa0977310:intron | 35.0% |
| CAGTGCATGCATCATAAAAT+TGG | - | chr6_4:11998784-11998803 | None:intergenic | 35.0% | |
| TTAGTTGAAGGAAATGGGTA+AGG | - | chr6_4:11998871-11998890 | None:intergenic | 35.0% | |
| TCATGATCAAGATCCTAAGT+AGG | + | chr6_4:11998918-11998937 | Msa0977310:intron | 35.0% | |
| ATCAAGATCCTAAGTAGGAT+TGG | + | chr6_4:11998923-11998942 | Msa0977310:intron | 35.0% | |
| ATGTAACACAGTTCGTAAGT+AGG | + | chr6_4:11998976-11998995 | Msa0977310:intron | 35.0% | |
| ACAAGCACACAAAAAAACAG+AGG | + | chr6_4:11999059-11999078 | Msa0977310:intron | 35.0% | |
| AAAACGAACCTGAGTAAAGT+CGG | + | chr6_4:11999111-11999130 | Msa0977310:intron | 35.0% | |
| ! | TTCTTTTCAGAGTTCAATGG+AGG | + | chr6_4:11999442-11999461 | Msa0977310:intron | 35.0% |
| !! | TAAAAGCACTGGAGAAGAAA+TGG | + | chr6_4:11999471-11999490 | Msa0977310:CDS | 35.0% |
| !! | AAAAGCACTGGAGAAGAAAT+GGG | + | chr6_4:11999472-11999491 | Msa0977310:CDS | 35.0% |
| TAAGATATAATACCTGGGGA+AGG | - | chr6_4:11999527-11999546 | None:intergenic | 35.0% | |
| TGTACACATCATCATGCAAT+CGG | - | chr6_4:11999563-11999582 | None:intergenic | 35.0% | |
| !!! | ACTCTTGTTGGGTTTTGTTT+TGG | + | chr6_4:11999861-11999880 | Msa0977310:intron | 35.0% |
| AAAAGTAAGAATCCAGTTGG+GGG | + | chr6_4:12000021-12000040 | Msa0977310:intron | 35.0% | |
| CTGAAAGCAAGAAAGAAAGA+CGG | - | chr6_4:12000420-12000439 | None:intergenic | 35.0% | |
| TGGAAAGATTGAATGCACAA+TGG | + | chr6_4:12000489-12000508 | Msa0977310:CDS | 35.0% | |
| CAAACTATGTACCTTATCAG+AGG | - | chr6_4:12000576-12000595 | None:intergenic | 35.0% | |
| TGAGAATCGGAGAAGAGAAT+TGG | - | chr6_4:11995157-11995176 | None:intergenic | 40.0% | |
| !! | ACGTTGGAGAGAGTTAGTTT+TGG | - | chr6_4:11995206-11995225 | None:intergenic | 40.0% |
| GTAGATCTTGAATCGAACGT+TGG | - | chr6_4:11995222-11995241 | None:intergenic | 40.0% | |
| AGAGAATGAGCATGAAGATG+AGG | - | chr6_4:11995283-11995302 | None:intergenic | 40.0% | |
| TGTTGGACATTGACACTTGT+CGG | - | chr6_4:11995557-11995576 | None:intergenic | 40.0% | |
| CACGCTAAATGTAGAGAAAC+TGG | + | chr6_4:11995667-11995686 | Msa0977310:intron | 40.0% | |
| AGCATCTAAGCTGTACTTAG+GGG | + | chr6_4:11995731-11995750 | Msa0977310:intron | 40.0% | |
| ATGAAGCACGAACACAAACA+CGG | - | chr6_4:11996013-11996032 | None:intergenic | 40.0% | |
| TGTTTGTGTTCGTGCTTCAT+AGG | + | chr6_4:11996013-11996032 | Msa0977310:intron | 40.0% | |
| GTTTGTGTTCGTGCTTCATA+GGG | + | chr6_4:11996014-11996033 | Msa0977310:intron | 40.0% | |
| TTGAAAATGCTCGGCTACAT+TGG | + | chr6_4:11996736-11996755 | Msa0977310:intron | 40.0% | |
| ! | ACTGTTTGGAATGACTGATG+TGG | + | chr6_4:11996789-11996808 | Msa0977310:intron | 40.0% |
| ATTACTACGGACCAAGTTAG+AGG | + | chr6_4:11997060-11997079 | Msa0977310:CDS | 40.0% | |
| !!! | ATTCGTATGTTTTGGGGTAC+AGG | + | chr6_4:11997241-11997260 | Msa0977310:intron | 40.0% |
| CTCAGATATCAAAGATTGGC+TGG | - | chr6_4:11997336-11997355 | None:intergenic | 40.0% | |
| CAGCCAATCTTTGATATCTG+AGG | + | chr6_4:11997334-11997353 | Msa0977310:CDS | 40.0% | |
| TCATATACTATGGGCCTGTT+TGG | + | chr6_4:11997625-11997644 | Msa0977310:intron | 40.0% | |
| ! | TAAGTTTGGTGAGACTGTTC+AGG | - | chr6_4:11997865-11997884 | None:intergenic | 40.0% |
| GAAATAGGGCCTGTTTAGAT+TGG | - | chr6_4:11997912-11997931 | None:intergenic | 40.0% | |
| GGTGAAAGAACGTAAACACA+AGG | + | chr6_4:11998193-11998212 | Msa0977310:intron | 40.0% | |
| ACATAACACGGTTCGTAAGT+AGG | + | chr6_4:11998217-11998236 | Msa0977310:intron | 40.0% | |
| AGAGAAAACAGTGGAAACAG+AGG | + | chr6_4:11998358-11998377 | Msa0977310:intron | 40.0% | |
| CAGTGGAAACAGAGGAAAAA+CGG | + | chr6_4:11998366-11998385 | Msa0977310:intron | 40.0% | |
| ! | GCTTTGACTTTACTCTGGTT+CGG | - | chr6_4:11998441-11998460 | None:intergenic | 40.0% |
| TTAGCGATTAATGCGACCAA+CGG | + | chr6_4:11998540-11998559 | Msa0977310:intron | 40.0% | |
| !! | GACATGCTTTATTTCGTTCG+AGG | + | chr6_4:11998679-11998698 | Msa0977310:intron | 40.0% |
| ! | AGATCCTAAGTAGGATTGGT+CGG | + | chr6_4:11998927-11998946 | Msa0977310:intron | 40.0% |
| ! | TCTTGTTTACGTTCCTTCAC+CGG | - | chr6_4:11998953-11998972 | None:intergenic | 40.0% |
| ACACAGTTCGTAAGTAGGAT+TGG | + | chr6_4:11998981-11999000 | Msa0977310:intron | 40.0% | |
| ! | AGTTCGTAAGTAGGATTGGT+AGG | + | chr6_4:11998985-11999004 | Msa0977310:intron | 40.0% |
| !! | GTTGCGTTTTGCATTTTGAC+TGG | + | chr6_4:11999291-11999310 | Msa0977310:intron | 40.0% |
| GTGACGCTTGCATTAATTGT+TGG | + | chr6_4:11999333-11999352 | Msa0977310:intron | 40.0% | |
| ATGCTGACAGAAACTCTTGT+TGG | + | chr6_4:11999849-11999868 | Msa0977310:intron | 40.0% | |
| TGCTGACAGAAACTCTTGTT+GGG | + | chr6_4:11999850-11999869 | Msa0977310:intron | 40.0% | |
| ! | TTTCTAGGTTGGACATGTAG+AGG | + | chr6_4:11999888-11999907 | Msa0977310:intron | 40.0% |
| ! | TTCTAGGTTGGACATGTAGA+GGG | + | chr6_4:11999889-11999908 | Msa0977310:intron | 40.0% |
| TCAGCAACTAGCAGTTAAAC+AGG | + | chr6_4:12000220-12000239 | Msa0977310:CDS | 40.0% | |
| CACAGAAGTAACAGCTCAAA+TGG | - | chr6_4:12000364-12000383 | None:intergenic | 40.0% | |
| ! | GAGCTGTTACTTCTGTGTAT+TGG | + | chr6_4:12000367-12000386 | Msa0977310:intron | 40.0% |
| !! | TCTGTGTATTGGTTGTCTTC+TGG | + | chr6_4:12000378-12000397 | Msa0977310:intron | 40.0% |
| AGAAATTCACCCGAAAGAGA+TGG | + | chr6_4:12000463-12000482 | Msa0977310:CDS | 40.0% | |
| ! | GCTAGAAATCGTTTTGTCAG+AGG | + | chr6_4:12000548-12000567 | Msa0977310:CDS | 40.0% |
| CAGATTATGATGGTCATCAG+AGG | + | chr6_4:12000597-12000616 | Msa0977310:CDS | 40.0% | |
| GCAGATGTAGTAGGAGGAAA+CGG | + | chr6_4:11995097-11995116 | Msa0977310:CDS | 45.0% | |
| ! | GATACATACCTGATGACGAG+TGG | - | chr6_4:11995350-11995369 | None:intergenic | 45.0% |
| ATTGACACTTGTCGGTCACA+AGG | - | chr6_4:11995549-11995568 | None:intergenic | 45.0% | |
| CAAGTGTCAATGTCCAACAC+CGG | + | chr6_4:11995558-11995577 | Msa0977310:intron | 45.0% | |
| GTATTTAGTCAATGCCGTGC+CGG | - | chr6_4:11995580-11995599 | None:intergenic | 45.0% | |
| TAGCGTGTATGAGTGAAGCA+CGG | - | chr6_4:11995654-11995673 | None:intergenic | 45.0% | |
| GCATGGACATTTCTGATCGA+AGG | + | chr6_4:11995871-11995890 | Msa0977310:intron | 45.0% | |
| GTGCTTCATAGGGTAGCATA+TGG | + | chr6_4:11996024-11996043 | Msa0977310:intron | 45.0% | |
| GATTGAGACCCTGTTTGGAT+TGG | - | chr6_4:11996276-11996295 | None:intergenic | 45.0% | |
| GAAGTGATTGAGACCCTGTT+TGG | - | chr6_4:11996281-11996300 | None:intergenic | 45.0% | |
| ! | TGCTTTTGTGGTATGAGGAC+AGG | + | chr6_4:11996937-11996956 | Msa0977310:intron | 45.0% |
| TGGAGGAGGCTGAATTACTA+CGG | + | chr6_4:11997047-11997066 | Msa0977310:CDS | 45.0% | |
| ! | GTGTGTGTATGTGTGCCATT+TGG | + | chr6_4:11997153-11997172 | Msa0977310:intron | 45.0% |
| !! | TGTGTATGTGTGCCATTTGG+TGG | + | chr6_4:11997156-11997175 | Msa0977310:intron | 45.0% |
| !!! | ATGTTTTGGGGTACAGGAGA+TGG | + | chr6_4:11997247-11997266 | Msa0977310:intron | 45.0% |
| TTTGATATCTGAGGGTTGGG+AGG | + | chr6_4:11997343-11997362 | Msa0977310:CDS | 45.0% | |
| GGATGAGAAGAAGAAAGAGC+TGG | + | chr6_4:11997442-11997461 | Msa0977310:CDS | 45.0% | |
| GATCGAGATCCTACTAGGAT+TGG | + | chr6_4:11998164-11998183 | Msa0977310:intron | 45.0% | |
| ! | GAGATCCTACTAGGATTGGT+CGG | + | chr6_4:11998168-11998187 | Msa0977310:intron | 45.0% |
| ACACGGTTCGTAAGTAGGAT+TGG | + | chr6_4:11998222-11998241 | Msa0977310:intron | 45.0% | |
| ! | GGTTCGTAAGTAGGATTGGT+AGG | + | chr6_4:11998226-11998245 | Msa0977310:intron | 45.0% |
| GGAGCCAAGCATAAAAACAG+AGG | + | chr6_4:11998299-11998318 | Msa0977310:intron | 45.0% | |
| ! | CCTCTGCTTTGACTTTACTC+TGG | - | chr6_4:11998446-11998465 | None:intergenic | 45.0% |
| CCAGAGTAAAGTCAAAGCAG+AGG | + | chr6_4:11998443-11998462 | Msa0977310:intron | 45.0% | |
| GGTGAAGGAACGTAAACAAG+AGG | + | chr6_4:11998952-11998971 | Msa0977310:intron | 45.0% | |
| !!! | GCGTTTTGCATTTTGACTGG+TGG | + | chr6_4:11999294-11999313 | Msa0977310:intron | 45.0% |
| ! | GGAGGATACTGTAAAAGCAC+TGG | + | chr6_4:11999460-11999479 | Msa0977310:CDS | 45.0% |
| ATACTGAGTCAGGCATCACA+TGG | - | chr6_4:11999653-11999672 | None:intergenic | 45.0% | |
| TACAAACAGGACCATCGTGA+AGG | - | chr6_4:11999968-11999987 | None:intergenic | 45.0% | |
| GAATCAAAGTTACCCCCAAC+TGG | - | chr6_4:12000036-12000055 | None:intergenic | 45.0% | |
| TTGCTTTCAGACACAAGCTG+AGG | + | chr6_4:12000430-12000449 | Msa0977310:intron | 45.0% | |
| TGCTTTCAGACACAAGCTGA+GGG | + | chr6_4:12000431-12000450 | Msa0977310:intron | 45.0% | |
| TTTCCAGCTCCATCTCTTTC+GGG | - | chr6_4:12000475-12000494 | None:intergenic | 45.0% | |
| CTTTCCAGCTCCATCTCTTT+CGG | - | chr6_4:12000476-12000495 | None:intergenic | 45.0% | |
| TTTCAGTTCTGCCTGCAGAA+TGG | - | chr6_4:12000631-12000650 | None:intergenic | 45.0% | |
| ! | AGCAGAGGCTTATGCTACTT+AGG | + | chr6_4:12000654-12000673 | Msa0977310:CDS | 45.0% |
| ! | GAGGCTTATGCTACTTAGGT+CGG | + | chr6_4:12000658-12000677 | Msa0977310:CDS | 45.0% |
| AGGTGTGGGTGTAACCGAAA+AGG | + | chr6_4:11995041-11995060 | Msa0977310:five_prime_UTR | 50.0% | |
| GATGTAGTAGGAGGAAACGG+AGG | + | chr6_4:11995100-11995119 | Msa0977310:CDS | 50.0% | |
| AGACGCTGAGAGATATCAGG+AGG | - | chr6_4:11995259-11995278 | None:intergenic | 50.0% | |
| GGAAGACGCTGAGAGATATC+AGG | - | chr6_4:11995262-11995281 | None:intergenic | 50.0% | |
| TCATTCCTCCACTCGTCATC+AGG | + | chr6_4:11995339-11995358 | Msa0977310:CDS | 50.0% | |
| ! | ACATACCTGATGACGAGTGG+AGG | - | chr6_4:11995347-11995366 | None:intergenic | 50.0% |
| GCACGGACACTTCTGATTGA+AGG | + | chr6_4:11995518-11995537 | Msa0977310:intron | 50.0% | |
| TTCGTATGACACCACCTGTG+TGG | + | chr6_4:11995849-11995868 | Msa0977310:intron | 50.0% | |
| AAATGTCCATGCCACACAGG+TGG | - | chr6_4:11995863-11995882 | None:intergenic | 50.0% | |
| CAGAAATGTCCATGCCACAC+AGG | - | chr6_4:11995866-11995885 | None:intergenic | 50.0% | |
| CTGTGTCTAGTGTTCGTGTC+AGG | + | chr6_4:11995973-11995992 | Msa0977310:intron | 50.0% | |
| CAGCGTCTCTTCTCTAAGCT+GGG | - | chr6_4:11996963-11996982 | None:intergenic | 50.0% | |
| TCAGCGTCTCTTCTCTAAGC+TGG | - | chr6_4:11996964-11996983 | None:intergenic | 50.0% | |
| GCTTAGAGAAGAGACGCTGA+AGG | + | chr6_4:11996964-11996983 | Msa0977310:CDS | 50.0% | |
| CCTCAGTCTCACCTCTAACT+TGG | - | chr6_4:11997074-11997093 | None:intergenic | 50.0% | |
| CCAAGTTAGAGGTGAGACTG+AGG | + | chr6_4:11997071-11997090 | Msa0977310:intron | 50.0% | |
| GTCAGGATCGAGATCCTACT+AGG | + | chr6_4:11998159-11998178 | Msa0977310:intron | 50.0% | |
| AAGCAGAGGAAACAGAGCTG+TGG | + | chr6_4:11998457-11998476 | Msa0977310:intron | 50.0% | |
| ATCGTGCGATCCTATGACCT+GGG | + | chr6_4:11998488-11998507 | Msa0977310:intron | 50.0% | |
| AAGATCGAGTCCCAGGTCAT+AGG | - | chr6_4:11998501-11998520 | None:intergenic | 50.0% | |
| TATGACCTGGGACTCGATCT+TGG | + | chr6_4:11998500-11998519 | Msa0977310:intron | 50.0% | |
| ACCTGAGTAAAGTCGGAGCA+CGG | + | chr6_4:11999118-11999137 | Msa0977310:intron | 50.0% | |
| GTTGGACATGTAGAGGGACT+AGG | + | chr6_4:11999895-11999914 | Msa0977310:intron | 50.0% | |
| !!! | AGGGACTAGGCTGCTTTTCT+AGG | + | chr6_4:11999908-11999927 | Msa0977310:intron | 50.0% |
| TGTCAGAGGCTCCTCTGATA+AGG | + | chr6_4:12000562-12000581 | Msa0977310:CDS | 50.0% | |
| AGGCTTCCTTACCATTCTGC+AGG | + | chr6_4:12000617-12000636 | Msa0977310:CDS | 50.0% | |
| GTTCTGCCTGCAGAATGGTA+AGG | - | chr6_4:12000626-12000645 | None:intergenic | 50.0% | |
| GCAGAACTGAAAGTCAGCAG+AGG | + | chr6_4:12000639-12000658 | Msa0977310:CDS | 50.0% | |
| GCATGGGCAGCAGATGTAGT+AGG | + | chr6_4:11995088-11995107 | Msa0977310:CDS | 55.0% | |
| TGGGCAGCAGATGTAGTAGG+AGG | + | chr6_4:11995091-11995110 | Msa0977310:CDS | 55.0% | |
| GGAATCGAGTTCGCGAACGT+AGG | - | chr6_4:11995185-11995204 | None:intergenic | 55.0% | |
| CGCTGAGAGATATCAGGAGG+AGG | - | chr6_4:11995256-11995275 | None:intergenic | 55.0% | |
| GTCAATGTCCAACACCGGCA+CGG | + | chr6_4:11995563-11995582 | Msa0977310:intron | 55.0% | |
| ATGACACCACCTGTGTGGCA+TGG | + | chr6_4:11995854-11995873 | Msa0977310:intron | 55.0% | |
| ! | TTCTGATCGAAGGCGTGTCC+TGG | + | chr6_4:11995881-11995900 | Msa0977310:intron | 55.0% |
| AAAGAAGCTGAGGGCTGAGC+TGG | + | chr6_4:11997280-11997299 | Msa0977310:CDS | 55.0% | |
| !! | TCCTACTAGGATTGGTCGGC+CGG | + | chr6_4:11998172-11998191 | Msa0977310:intron | 55.0% |
| GATCGTGCGATCCTATGACC+TGG | + | chr6_4:11998487-11998506 | Msa0977310:intron | 55.0% | |
| TGTAGCCAAGATCGAGTCCC+AGG | - | chr6_4:11998508-11998527 | None:intergenic | 55.0% | |
| !! | CCTAAGTAGGATTGGTCGGC+CGG | + | chr6_4:11998931-11998950 | Msa0977310:intron | 55.0% |
| ACCGTGCTCCGACTTTACTC+AGG | - | chr6_4:11999122-11999141 | None:intergenic | 55.0% | |
| GTAAAGTCGGAGCACGGTTG+AGG | + | chr6_4:11999124-11999143 | Msa0977310:intron | 55.0% | |
| GCACTAAAACAGCCTTCCCC+AGG | + | chr6_4:11999512-11999531 | Msa0977310:CDS | 55.0% | |
| TCACCCGAAAGAGATGGAGC+TGG | + | chr6_4:12000469-12000488 | Msa0977310:CDS | 55.0% | |
| ! | AGTCAATGCCGTGCCGGTGT+TGG | - | chr6_4:11995574-11995593 | None:intergenic | 60.0% |
| ACCGGCCGACCAATCCTAGT+AGG | - | chr6_4:11998176-11998195 | None:intergenic | 60.0% | |
| CCGGCCGACCAATCCTACTT+AGG | - | chr6_4:11998934-11998953 | None:intergenic | 60.0% | |
| !! | TAGGATTGGTCGGCCGGTGA+AGG | + | chr6_4:11998178-11998197 | Msa0977310:intron | 60.0% |
| GAGCACGGTTGAGGTGACGT+GGG | + | chr6_4:11999133-11999152 | Msa0977310:intron | 60.0% | |
| CACGACGCGTGTCAGACACC+AGG | - | chr6_4:11995902-11995921 | None:intergenic | 65.0% | |
| GGAGCACGGTTGAGGTGACG+TGG | + | chr6_4:11999132-11999151 | Msa0977310:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 11994944 | 12000884 | 11994944 | ID=Msa0977310;Name=Msa0977310 |
| chr6_4 | mRNA | 11994944 | 12000884 | 11994944 | ID=Msa0977310-mRNA-1;Parent=Msa0977310;Name=Msa0977310-mRNA-1;_AED=0.06;_eAED=0.06;_QI=129|1|1|1|1|1|6|145|352 |
| chr6_4 | exon | 11994944 | 11995360 | 11994944 | ID=Msa0977310-mRNA-1:exon:4248;Parent=Msa0977310-mRNA-1 |
| chr6_4 | exon | 11996959 | 11997081 | 11996959 | ID=Msa0977310-mRNA-1:exon:4249;Parent=Msa0977310-mRNA-1 |
| chr6_4 | exon | 11997263 | 11997463 | 11997263 | ID=Msa0977310-mRNA-1:exon:4250;Parent=Msa0977310-mRNA-1 |
| chr6_4 | exon | 11999452 | 11999533 | 11999452 | ID=Msa0977310-mRNA-1:exon:4251;Parent=Msa0977310-mRNA-1 |
| chr6_4 | exon | 12000177 | 12000241 | 12000177 | ID=Msa0977310-mRNA-1:exon:4252;Parent=Msa0977310-mRNA-1 |
| chr6_4 | exon | 12000440 | 12000884 | 12000440 | ID=Msa0977310-mRNA-1:exon:4253;Parent=Msa0977310-mRNA-1 |
| chr6_4 | five_prime_UTR | 11994944 | 11995072 | 11994944 | ID=Msa0977310-mRNA-1:five_prime_utr;Parent=Msa0977310-mRNA-1 |
| chr6_4 | CDS | 11995073 | 11995360 | 11995073 | ID=Msa0977310-mRNA-1:cds;Parent=Msa0977310-mRNA-1 |
| chr6_4 | CDS | 11996959 | 11997081 | 11996959 | ID=Msa0977310-mRNA-1:cds;Parent=Msa0977310-mRNA-1 |
| chr6_4 | CDS | 11997263 | 11997463 | 11997263 | ID=Msa0977310-mRNA-1:cds;Parent=Msa0977310-mRNA-1 |
| chr6_4 | CDS | 11999452 | 11999533 | 11999452 | ID=Msa0977310-mRNA-1:cds;Parent=Msa0977310-mRNA-1 |
| chr6_4 | CDS | 12000177 | 12000241 | 12000177 | ID=Msa0977310-mRNA-1:cds;Parent=Msa0977310-mRNA-1 |
| chr6_4 | CDS | 12000440 | 12000739 | 12000440 | ID=Msa0977310-mRNA-1:cds;Parent=Msa0977310-mRNA-1 |
| chr6_4 | three_prime_UTR | 12000740 | 12000884 | 12000740 | ID=Msa0977310-mRNA-1:three_prime_utr;Parent=Msa0977310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
